# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
# Author: Pablo Escobar Lopez
# Swiss Institute of Bioinformatics
# Biozentrum - University of Basel

easyblock = 'MakeCp'

name = "CEM"
version = "0.9.1"

homepage = 'http://alumni.cs.ucr.edu/~liw/cem.html'
description = """ CEM: Transcriptome Assembly and Isoform Expression Level Estimation 
 from Biased RNA-Seq Reads. CEM is an algorithm to assemble transcripts and estimate 
 their expression levels from RNA-Seq reads. """

toolchain = {'name': 'goolf', 'version': '1.4.10'}

source_urls = ['http://alumni.cs.ucr.edu/~liw/']
sources = ['%(namelower)s.%(version)s.tar.gz']

dependencies = [
    ('GSL', '1.16')
]

start_dir = "src"

files_to_copy = ["../bin", "../demo"]

sanity_check_paths = {
    'files': ["bin/%s" % x for x in ['bed2sam', 'bed2gtf', 'comparegtf',
                                     'gtf2pred', 'isolassocem', 'pred2gtf',
                                     'processsam', 'sortgtf']],
    'dirs': []
}

moduleclass = 'bio'
