easyblock = 'Tarball'

name = 'Redundans'
version = '0.13c'

homepage = 'https://github.com/lpryszcz/redundans'
description = "Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes."

toolchain = {'name': 'intel', 'version': '2017b'}

source_urls = ['https://github.com/lpryszcz/redundans/archive/']
sources = ['v%(version)s.tar.gz']
checksums = ['26d48f27a32678d94c1d00cb3b8991d74891d6cad64a94569901ff9607a7a736']

dependencies = [
    ('Python', '2.7.14'),
    ('Perl', '5.26.0'),
    ('LAST', '914'),
    ('parallel', '20171122'),
    ('BWA', '0.7.17'),
    ('SNAP', '1.0beta.23'),
    ('SSPACE_Basic', '2.1.1', '-Perl-%(perlver)s'),
    ('GapCloser', '1.12-r6'),
    ('FastaIndex', '0.11rc7', '-Python-%(pyver)s'),
    ('pyScaf', '0.12a4', '-Python-%(pyver)s'),
]

keepsymlinks = True

sanity_check_paths = {
    'files': ['redundans.py'],
    'dirs': ['bin', 'docs'],
}

modextrapaths = {'PATH': ''}

moduleclass = 'bio'
