From 1e05a6a60173767a8d3250a065deb508f9be5900 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Fri, 29 Nov 2013 14:43:38 +0100 Subject: [PATCH 0001/1217] add FSA, PRANK & SMALT, coming from LCSB experimenters Signed-off-by: Fotis Georgatos --- .../f/FSA/FSA-1.15.8-goolf-1.4.10.eb | 33 +++++++++++++++++ .../f/FSA/FSA-1.15.8-ictce-5.3.0.eb | 33 +++++++++++++++++ .../p/PRANK/PRANK-130820-goolf-1.4.10.eb | 34 +++++++++++++++++ .../p/PRANK/PRANK-130820-ictce-5.3.0.eb | 34 +++++++++++++++++ .../s/SMALT/SMALT-0.7.4-goolf-1.4.10.eb | 37 +++++++++++++++++++ .../s/SMALT/SMALT-0.7.4-ictce-5.3.0.eb | 37 +++++++++++++++++++ .../s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb | 30 +++++++++++++++ .../s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb | 30 +++++++++++++++ 8 files changed, 268 insertions(+) create mode 100644 easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb create mode 100644 easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb create mode 100644 easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb create mode 100644 easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb create mode 100644 easybuild/easyconfigs/s/SMALT/SMALT-0.7.4-goolf-1.4.10.eb create mode 100644 easybuild/easyconfigs/s/SMALT/SMALT-0.7.4-ictce-5.3.0.eb create mode 100644 easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb create mode 100644 easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb diff --git a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb new file mode 100644 index 0000000000..af8b162d43 --- /dev/null +++ b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = "FSA" +version = "1.15.8" + +homepage = "http://fsa.sourceforge.net" +description = """FSA is a probabilistic multiple sequence alignment algorithm + which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'opt': True, 'optarch': True} + +source_urls = ["http://downloads.sourceforge.net/project/fsa/"] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('MUMmer', '3.23')] + +sanity_check_paths = { + 'files': ["bin/fsa"], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb new file mode 100644 index 0000000000..ea38265ab5 --- /dev/null +++ b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = "FSA" +version = "1.15.8" + +homepage = "http://fsa.sourceforge.net" +description = """FSA is a probabilistic multiple sequence alignment algorithm + which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.""" + +toolchain = {'name': 'ictce', 'version': '5.3.0'} +toolchainopts = {'opt': True, 'optarch': True} + +source_urls = ["http://downloads.sourceforge.net/project/fsa/"] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('MUMmer', '3.23')] + +sanity_check_paths = { + 'files': ["bin/fsa"], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb new file mode 100644 index 0000000000..c594c6b15f --- /dev/null +++ b/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb @@ -0,0 +1,34 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = "Tarball" + +name = "PRANK" +version = "130820" + +homepage = "http://code.google.com/p/prank-msa/" +description = """PRANK is a probabilistic multiple alignment program for DNA, codon + and amino-acid sequences. PRANK is based on a novel algorithm that treats insertions + correctly and avoids over-estimation of the number of deletion events.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'opt': True, 'optarch': True} + +source_urls = ["http://prank-msa.googlecode.com/files"] +sources = ["prank.linux64.%(version)s.tgz"] + +sanity_check_paths = { + 'files': ["bin/prank", "bin/exonerate"], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb new file mode 100644 index 0000000000..97c62af4ac --- /dev/null +++ b/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb @@ -0,0 +1,34 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = "Tarball" + +name = "PRANK" +version = "130820" + +homepage = "http://code.google.com/p/prank-msa/" +description = """PRANK is a probabilistic multiple alignment program for DNA, codon + and amino-acid sequences. PRANK is based on a novel algorithm that treats insertions + correctly and avoids over-estimation of the number of deletion events.""" + +toolchain = {'name': 'ictce', 'version': '5.3.0'} +toolchainopts = {'opt': True, 'optarch': True} + +source_urls = ["http://prank-msa.googlecode.com/files"] +sources = ["prank.linux64.%(version)s.tgz"] + +sanity_check_paths = { + 'files': ["bin/prank", "bin/exonerate"], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.4-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.4-goolf-1.4.10.eb new file mode 100644 index 0000000000..0beeeb58ca --- /dev/null +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.4-goolf-1.4.10.eb @@ -0,0 +1,37 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = "Tarball" + +name = "SMALT" +version = "0.7.4" + +homepage = "http://www.sanger.ac.uk/resources/software/smalt/" +description = """SMALT efficiently aligns DNA sequencing reads with a reference genome.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'opt': True, 'optarch': True} + +source_urls = ["ftp://ftp.sanger.ac.uk/pub4/resources/software/smalt"] +sources = [SOURCELOWER_TGZ] + +sanity_check_paths = { + 'files': ["smalt_x86_64"], + 'dirs': [] +} + +modextrapaths = { + 'PATH': '', + 'MANPATH': '', +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.4-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.4-ictce-5.3.0.eb new file mode 100644 index 0000000000..45ed75c381 --- /dev/null +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.4-ictce-5.3.0.eb @@ -0,0 +1,37 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = "Tarball" + +name = "SMALT" +version = "0.7.4" + +homepage = "http://www.sanger.ac.uk/resources/software/smalt/" +description = """SMALT efficiently aligns DNA sequencing reads with a reference genome.""" + +toolchain = {'name': 'ictce', 'version': '5.3.0'} +toolchainopts = {'opt': True, 'optarch': True} + +source_urls = ["ftp://ftp.sanger.ac.uk/pub4/resources/software/smalt"] +sources = [SOURCELOWER_TGZ] + +sanity_check_paths = { + 'files': ["smalt_x86_64"], + 'dirs': [] +} + +modextrapaths = { + 'PATH': '', + 'MANPATH': '', +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb new file mode 100644 index 0000000000..bb9980bc8d --- /dev/null +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb @@ -0,0 +1,30 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = "SMALT" +version = "0.7.5" + +homepage = "http://www.sanger.ac.uk/resources/software/smalt/" +description = """SMALT efficiently aligns DNA sequencing reads with a reference genome.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'opt': True, 'optarch': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ["bin/smalt"], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb new file mode 100644 index 0000000000..7ffae18045 --- /dev/null +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb @@ -0,0 +1,30 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = "SMALT" +version = "0.7.5" + +homepage = "http://www.sanger.ac.uk/resources/software/smalt/" +description = """SMALT efficiently aligns DNA sequencing reads with a reference genome.""" + +toolchain = {'name': 'ictce', 'version': '5.3.0'} +toolchainopts = {'opt': True, 'optarch': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ["bin/smalt"], + 'dirs': [] +} + +moduleclass = 'bio' -- GitLab From 909b8db982b707f095541936b7fa5c6a4308d7fc Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Thu, 5 Dec 2013 21:41:44 +0100 Subject: [PATCH 0002/1217] init Infernal 1.1 Signed-off-by: Fotis Georgatos --- .../Infernal-1.1-goalf-1.1.0-no-OFED.eb | 32 ++++++++++++++++++ .../i/Infernal/Infernal-1.1-goolf-1.4.10.eb | 31 +++++++++++++++++ .../i/Infernal/Infernal-1.1-ictce-4.0.6.eb | 32 ++++++++++++++++++ .../i/Infernal/Infernal-1.1-ictce-5.3.0.eb | 33 +++++++++++++++++++ 4 files changed, 128 insertions(+) create mode 100644 easybuild/easyconfigs/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb create mode 100644 easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb create mode 100644 easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb create mode 100644 easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb new file mode 100644 index 0000000000..a627129670 --- /dev/null +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb @@ -0,0 +1,32 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'Infernal' +version = "1.1" + +homepage = 'http://infernal.janelia.org/' +description = """Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases + for RNA structure and sequence similarities.""" + +toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['ftp://selab.janelia.org/pub/software/%s' % name.lower()] + +sanity_check_paths = { + 'files': ['bin/cm%s' % x for x in ['align', 'build', 'calibrate', 'convert', 'emit', + 'fetch', 'press', 'scan', 'search', 'stat']], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb new file mode 100644 index 0000000000..42496c9448 --- /dev/null +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'Infernal' +version = "1.1" + +homepage = 'http://infernal.janelia.org/' +description = """Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases +for RNA structure and sequence similarities.""" +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['ftp://selab.janelia.org/pub/software/%s' % name.lower()] + +sanity_check_paths = { + 'files': ['bin/cm%s' % x for x in ['align', 'build', 'calibrate', 'convert', 'emit', + 'fetch', 'press', 'scan', 'search', 'stat']], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb new file mode 100644 index 0000000000..4b60b1026c --- /dev/null +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb @@ -0,0 +1,32 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'Infernal' +version = "1.1" + +homepage = 'http://infernal.janelia.org/' +description = """Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases + for RNA structure and sequence similarities.""" + +toolchain = {'name': 'ictce', 'version': '4.0.6'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['ftp://selab.janelia.org/pub/software/%s' % name.lower()] + +sanity_check_paths = { + 'files': ['bin/cm%s' % x for x in ['align', 'build', 'calibrate', 'convert', 'emit', + 'fetch', 'press', 'scan', 'search', 'stat']], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb new file mode 100644 index 0000000000..eaa4b42f4a --- /dev/null +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'Infernal' +version = "1.1" + +homepage = 'http://infernal.janelia.org/' +description = """Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases + for RNA structure and sequence similarities.""" + + +toolchain = {'name': 'ictce', 'version': '5.3.0'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['ftp://selab.janelia.org/pub/software/%s' % name.lower()] + +sanity_check_paths = { + 'files': ['bin/cm%s' % x for x in ['align', 'build', 'calibrate', 'convert', 'emit', + 'fetch', 'press', 'scan', 'search', 'stat']], + 'dirs': [] +} + +moduleclass = 'bio' -- GitLab From f2bbe865971e53648d1800bc5d7bd1a4b9d32c9b Mon Sep 17 00:00:00 2001 From: pescobar Date: Wed, 22 Jan 2014 15:52:03 +0100 Subject: [PATCH 0003/1217] DIALIGN-TX-1.0.2-goolf-1.4.10.eb --- .../DIALIGN-TX-1.0.2-goolf-1.4.10.eb | 30 +++++++++++++++++++ 1 file changed, 30 insertions(+) create mode 100644 easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb diff --git a/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb new file mode 100644 index 0000000000..e3550164bf --- /dev/null +++ b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb @@ -0,0 +1,30 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +name = 'DIALIGN-TX' +version = '1.0.2' + +easyblock = 'MakeCp' + +homepage = 'http://dialign-tx.gobics.de/' +description = """ greedy and progressive approaches for segment-based + multiple sequence alignment """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ["http://dialign-tx.gobics.de/"] +sources = ['%(name)s_%(version)s.tar.gz'] + +start_dir = 'source' +makeopts = 'CPPFLAGS="-O3 -funroll-loops -march=native -mfpmath=sse -msse -mmmx"' + +files_to_copy = [(['dialign-tx'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/dialign-tx'], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From c4add3d235fa4393e34f9dbf740b5f0ddadde960 Mon Sep 17 00:00:00 2001 From: pescobar Date: Fri, 24 Jan 2014 17:23:52 +0100 Subject: [PATCH 0004/1217] source_urls = [homepage] --- .../easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb index e3550164bf..da0f8cb987 100644 --- a/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb @@ -14,7 +14,7 @@ description = """ greedy and progressive approaches for segment-based toolchain = {'name': 'goolf', 'version': '1.4.10'} -source_urls = ["http://dialign-tx.gobics.de/"] +source_urls = [homepage] sources = ['%(name)s_%(version)s.tar.gz'] start_dir = 'source' -- GitLab From a2d25a65d079fcc29c4b4219065619467cc6d309 Mon Sep 17 00:00:00 2001 From: pescobar Date: Thu, 30 Jan 2014 15:31:21 +0100 Subject: [PATCH 0005/1217] GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb --- .../GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb | 36 +++++++++++++++++++ 1 file changed, 36 insertions(+) create mode 100644 easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb new file mode 100644 index 0000000000..8caec6cbce --- /dev/null +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +name = 'GMAP-GSNAP' +version = '2014-01-21' + +homepage = 'http://research-pub.gene.com/gmap/' +description = ''' + GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences + GSNAP: Genomic Short-read Nucleotide Alignment Program ''' + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +# with this deps you can use standard compressed files +# to support files in gobby format take a look at README for extra dependencies +# http://research-pub.gene.com/gmap/src/README +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), +] + +source_urls = ['http://research-pub.gene.com/gmap/src/'] +sources = [SOURCELOWER_TAR_GZ] + +# you can change the MAX_READLENGTH for GSNAP with something like this. +# details in the README http://research-pub.gene.com/gmap/src/README +#configopts = 'MAX_READLENGTH=250' + +sanity_check_paths = { + 'files': ['bin/gmap', 'bin/gsnap'], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From f43403794ecc13c3acd18d70a16b1a51310016bf Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Sat, 15 Feb 2014 03:17:55 +0100 Subject: [PATCH 0006/1217] fix Infernal source_urls with templating Signed-off-by: Fotis Georgatos --- .../i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb | 2 +- .../easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb | 5 +++-- easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb | 3 +-- 4 files changed, 6 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb index a627129670..766222f0f1 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb @@ -21,7 +21,7 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['ftp://selab.janelia.org/pub/software/%s' % name.lower()] +source_urls = ['ftp://selab.janelia.org/pub/software/%(namelower)s'] sanity_check_paths = { 'files': ['bin/cm%s' % x for x in ['align', 'build', 'calibrate', 'convert', 'emit', diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb index 42496c9448..b9331ab8e9 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb @@ -15,12 +15,13 @@ version = "1.1" homepage = 'http://infernal.janelia.org/' description = """Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases -for RNA structure and sequence similarities.""" + for RNA structure and sequence similarities.""" + toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['ftp://selab.janelia.org/pub/software/%s' % name.lower()] +source_urls = ['ftp://selab.janelia.org/pub/software/%(namelower)s'] sanity_check_paths = { 'files': ['bin/cm%s' % x for x in ['align', 'build', 'calibrate', 'convert', 'emit', diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb index 4b60b1026c..e64ab0b0d9 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb @@ -21,7 +21,7 @@ toolchain = {'name': 'ictce', 'version': '4.0.6'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['ftp://selab.janelia.org/pub/software/%s' % name.lower()] +source_urls = ['ftp://selab.janelia.org/pub/software/%(namelower)s'] sanity_check_paths = { 'files': ['bin/cm%s' % x for x in ['align', 'build', 'calibrate', 'convert', 'emit', diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb index eaa4b42f4a..2aaa4dd946 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb @@ -17,12 +17,11 @@ homepage = 'http://infernal.janelia.org/' description = """Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities.""" - toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['ftp://selab.janelia.org/pub/software/%s' % name.lower()] +source_urls = ['ftp://selab.janelia.org/pub/software/%(namelower)s'] sanity_check_paths = { 'files': ['bin/cm%s' % x for x in ['align', 'build', 'calibrate', 'convert', 'emit', -- GitLab From 5232769fa7638639e9dc82de47cb82e33f8124bd Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Sat, 15 Feb 2014 03:23:10 +0100 Subject: [PATCH 0007/1217] adjust PRANK Signed-off-by: Fotis Georgatos --- .../p/PRANK/PRANK-130820-goolf-1.4.10.eb | 17 ++++++++++++----- .../p/PRANK/PRANK-130820-ictce-5.3.0.eb | 17 ++++++++++++----- 2 files changed, 24 insertions(+), 10 deletions(-) diff --git a/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb index c594c6b15f..e1d713088e 100644 --- a/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb @@ -10,21 +10,28 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## -easyblock = "Tarball" +easyblock = 'MakeCp' name = "PRANK" version = "130820" homepage = "http://code.google.com/p/prank-msa/" -description = """PRANK is a probabilistic multiple alignment program for DNA, codon - and amino-acid sequences. PRANK is based on a novel algorithm that treats insertions - correctly and avoids over-estimation of the number of deletion events.""" +description = """PRANK is a probabilistic multiple alignment program for DNA, + codon and amino-acid sequences. PRANK is based on a novel algorithm that treats + insertions correctly and avoids over-estimation of the number of deletion events.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': True, 'optarch': True} source_urls = ["http://prank-msa.googlecode.com/files"] -sources = ["prank.linux64.%(version)s.tgz"] +sources = ['%(namelower)s.source.%(version)s.tgz'] + +# PRANK uses MAFFT as external tool to contruct guide tree +dependencies = [('MAFFT', '7.130')] + +start_dir = 'src' + +files_to_copy = [(['prank'], 'bin')] sanity_check_paths = { 'files': ["bin/prank", "bin/exonerate"], diff --git a/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb index 97c62af4ac..9f531219a1 100644 --- a/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb @@ -10,21 +10,28 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## -easyblock = "Tarball" +easyblock = 'MakeCp' name = "PRANK" version = "130820" homepage = "http://code.google.com/p/prank-msa/" -description = """PRANK is a probabilistic multiple alignment program for DNA, codon - and amino-acid sequences. PRANK is based on a novel algorithm that treats insertions - correctly and avoids over-estimation of the number of deletion events.""" +description = """PRANK is a probabilistic multiple alignment program for DNA, + codon and amino-acid sequences. PRANK is based on a novel algorithm that treats + insertions correctly and avoids over-estimation of the number of deletion events.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True, 'optarch': True} source_urls = ["http://prank-msa.googlecode.com/files"] -sources = ["prank.linux64.%(version)s.tgz"] +sources = ['%(namelower)s.source.%(version)s.tgz'] + +# PRANK uses MAFFT as external tool to contruct guide tree +dependencies = [('MAFFT', '7.130')] + +start_dir = 'src' + +files_to_copy = [(['prank'], 'bin')] sanity_check_paths = { 'files': ["bin/prank", "bin/exonerate"], -- GitLab From 772c4dce427557ecc80aa769756947bd807cafd5 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Sat, 15 Feb 2014 03:38:14 +0100 Subject: [PATCH 0008/1217] add MAFFT for PRANK, make sure it's used Signed-off-by: Fotis Georgatos --- ...MAFFT-7.130-with-extensions-ictce-5.3.0.eb | 32 +++++++++++++++++++ .../p/PRANK/PRANK-130820-goolf-1.4.10.eb | 4 +-- .../p/PRANK/PRANK-130820-ictce-5.3.0.eb | 4 +-- 3 files changed, 36 insertions(+), 4 deletions(-) create mode 100644 easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-with-extensions-ictce-5.3.0.eb diff --git a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-with-extensions-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-with-extensions-ictce-5.3.0.eb new file mode 100644 index 0000000000..7fd327efda --- /dev/null +++ b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-with-extensions-ictce-5.3.0.eb @@ -0,0 +1,32 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +name = 'MAFFT' +version = '7.130' +versionsuffix = '-with-extensions' + +homepage = 'http://mafft.cbrc.jp/alignment/software/' +description = """MAFFT is a multiple sequence alignment program + for unix-like operating systems. It offers a range of multiple + alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), + FFT-NS-2 (fast; for alignment of <∼10,000 sequences), etc.""" + +toolchain = {'name': 'ictce', 'version': '5.3.0'} + +source_urls = [homepage] +sources = ['%(namelower)s-%(version)s%(versionsuffix)s-src.tgz'] + +skipsteps = ['configure'] +start_dir = 'core' +installopts = 'PREFIX=%(installdir)s' + +modextrapaths = {'MAFFT_BINARIES': 'libexec/mafft'} + +sanity_check_paths = { + 'files': ['bin/mafft'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb index e1d713088e..da877e2d72 100644 --- a/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb @@ -27,14 +27,14 @@ source_urls = ["http://prank-msa.googlecode.com/files"] sources = ['%(namelower)s.source.%(version)s.tgz'] # PRANK uses MAFFT as external tool to contruct guide tree -dependencies = [('MAFFT', '7.130')] +dependencies = [('MAFFT', '7.130', '-with-extensions')] start_dir = 'src' files_to_copy = [(['prank'], 'bin')] sanity_check_paths = { - 'files': ["bin/prank", "bin/exonerate"], + 'files': ["bin/prank"], 'dirs': [] } diff --git a/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb index 9f531219a1..a40acd6d3c 100644 --- a/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb @@ -27,14 +27,14 @@ source_urls = ["http://prank-msa.googlecode.com/files"] sources = ['%(namelower)s.source.%(version)s.tgz'] # PRANK uses MAFFT as external tool to contruct guide tree -dependencies = [('MAFFT', '7.130')] +dependencies = [('MAFFT', '7.130', '-with-extensions')] start_dir = 'src' files_to_copy = [(['prank'], 'bin')] sanity_check_paths = { - 'files': ["bin/prank", "bin/exonerate"], + 'files': ["bin/prank"], 'dirs': [] } -- GitLab From 6488585f3ee6b39bf1fc43a055a34c0cb2e2587f Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Sat, 15 Feb 2014 03:44:48 +0100 Subject: [PATCH 0009/1217] adjust SMALT builds Signed-off-by: Fotis Georgatos --- .../s/SMALT/SMALT-0.7.4-goolf-1.4.10.eb | 37 ------------------- .../s/SMALT/SMALT-0.7.4-ictce-5.3.0.eb | 37 ------------------- .../s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb | 2 +- .../s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb | 2 +- 4 files changed, 2 insertions(+), 76 deletions(-) delete mode 100644 easybuild/easyconfigs/s/SMALT/SMALT-0.7.4-goolf-1.4.10.eb delete mode 100644 easybuild/easyconfigs/s/SMALT/SMALT-0.7.4-ictce-5.3.0.eb diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.4-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.4-goolf-1.4.10.eb deleted file mode 100644 index 0beeeb58ca..0000000000 --- a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.4-goolf-1.4.10.eb +++ /dev/null @@ -1,37 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html -## - -easyblock = "Tarball" - -name = "SMALT" -version = "0.7.4" - -homepage = "http://www.sanger.ac.uk/resources/software/smalt/" -description = """SMALT efficiently aligns DNA sequencing reads with a reference genome.""" - -toolchain = {'name': 'goolf', 'version': '1.4.10'} -toolchainopts = {'opt': True, 'optarch': True} - -source_urls = ["ftp://ftp.sanger.ac.uk/pub4/resources/software/smalt"] -sources = [SOURCELOWER_TGZ] - -sanity_check_paths = { - 'files': ["smalt_x86_64"], - 'dirs': [] -} - -modextrapaths = { - 'PATH': '', - 'MANPATH': '', -} - -moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.4-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.4-ictce-5.3.0.eb deleted file mode 100644 index 45ed75c381..0000000000 --- a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.4-ictce-5.3.0.eb +++ /dev/null @@ -1,37 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html -## - -easyblock = "Tarball" - -name = "SMALT" -version = "0.7.4" - -homepage = "http://www.sanger.ac.uk/resources/software/smalt/" -description = """SMALT efficiently aligns DNA sequencing reads with a reference genome.""" - -toolchain = {'name': 'ictce', 'version': '5.3.0'} -toolchainopts = {'opt': True, 'optarch': True} - -source_urls = ["ftp://ftp.sanger.ac.uk/pub4/resources/software/smalt"] -sources = [SOURCELOWER_TGZ] - -sanity_check_paths = { - 'files': ["smalt_x86_64"], - 'dirs': [] -} - -modextrapaths = { - 'PATH': '', - 'MANPATH': '', -} - -moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb index bb9980bc8d..ac5e6d43c2 100644 --- a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb @@ -23,7 +23,7 @@ source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ["bin/smalt"], + 'files': ['bin/%s' % x for x in ['simread', 'smalt', 'mixreads','readstats', 'dirs': [] } diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb index 7ffae18045..b3475f56a3 100644 --- a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb @@ -23,7 +23,7 @@ source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ["bin/smalt"], + 'files': ['bin/%s' % x for x in ['simread', 'smalt', 'mixreads','readstats', 'dirs': [] } -- GitLab From 2bf00c668e717eacb6283453ef86cbc798d26cde Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Sat, 15 Feb 2014 03:46:23 +0100 Subject: [PATCH 0010/1217] fix bug in SMALT Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb index ac5e6d43c2..e04563db6e 100644 --- a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb @@ -23,7 +23,7 @@ source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['simread', 'smalt', 'mixreads','readstats', + 'files': ['bin/%s' % x for x in ['simread', 'smalt', 'mixreads','readstats']], 'dirs': [] } diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb index b3475f56a3..1930c64969 100644 --- a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb @@ -23,7 +23,7 @@ source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['simread', 'smalt', 'mixreads','readstats', + 'files': ['bin/%s' % x for x in ['simread', 'smalt', 'mixreads','readstats']], 'dirs': [] } -- GitLab From dbdeb510118fb9b2516a3c640747ba884a730abf Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Mon, 24 Feb 2014 00:55:20 +0100 Subject: [PATCH 0011/1217] add rCUDA-4.0.1_linux_64_Ubuntu10.04.eb Signed-off-by: Fotis Georgatos --- .../rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb | 32 +++++++++++++++++++ 1 file changed, 32 insertions(+) create mode 100644 easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb diff --git a/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb b/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb new file mode 100644 index 0000000000..1c4c98b0f0 --- /dev/null +++ b/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb @@ -0,0 +1,32 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB +# Authors:: Fotis Georgatos , +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-99.html +## + +easyblock = "Tarball" + +name = "rCUDA" +version = "4.0.1" +versionsuffix = "_linux_64_Ubuntu10.04" + +homepage = 'http://www.rcuda.net/' +description = """The rCUDA Framework enables the concurrent usage of CUDA-compatible devices remotely.""" + +toolchain = {'version': 'dummy', 'name': 'dummy'} + +sources = ['rCUDA_%(version)s%(versionsuffix)s.tar.gz'] + +sanity_check_paths = { + 'files': ["framework/common/rCUDAcommIB.so", "framework/common/rCUDAcommTCP.so", + "framework/rCUDAl/libcudart.so", "util/rCUDA_util.h"], + 'dirs': [] +} + +moduleclass = 'system' -- GitLab From 67d511095e24059a390d4d081bf081b71c7d24f6 Mon Sep 17 00:00:00 2001 From: Toon Verstraelen Date: Mon, 17 Mar 2014 21:15:48 -0500 Subject: [PATCH 0012/1217] configs for horton-1.2.1 with dependencies --- .../HDF5-1.8.12-goolf-1.4.10-zlib-1.2.7.eb | 22 +++++++++++ .../HDF5-1.8.12-ictce-4.1.13-zlib-1.2.7.eb | 26 +++++++++++++ .../h5py-2.2.1-goolf-1.4.10-Python-2.7.3.eb | 37 ++++++++++++++++++ .../h5py-2.2.1-ictce-4.1.13-Python-2.7.3.eb | 37 ++++++++++++++++++ .../horton-1.2.1-goolf-1.4.10-Python-2.7.3.eb | 38 +++++++++++++++++++ .../horton-1.2.1-ictce-4.1.13-Python-2.7.3.eb | 38 +++++++++++++++++++ .../l/libxc/libxc-2.0.3-goolf-1.4.10.eb | 30 +++++++++++++++ .../l/libxc/libxc-2.0.3-ictce-4.1.13.eb | 30 +++++++++++++++ 8 files changed, 258 insertions(+) create mode 100644 easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-goolf-1.4.10-zlib-1.2.7.eb create mode 100644 easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-4.1.13-zlib-1.2.7.eb create mode 100644 easybuild/easyconfigs/h/h5py/h5py-2.2.1-goolf-1.4.10-Python-2.7.3.eb create mode 100644 easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-4.1.13-Python-2.7.3.eb create mode 100644 easybuild/easyconfigs/h/horton/horton-1.2.1-goolf-1.4.10-Python-2.7.3.eb create mode 100644 easybuild/easyconfigs/h/horton/horton-1.2.1-ictce-4.1.13-Python-2.7.3.eb create mode 100644 easybuild/easyconfigs/l/libxc/libxc-2.0.3-goolf-1.4.10.eb create mode 100644 easybuild/easyconfigs/l/libxc/libxc-2.0.3-ictce-4.1.13.eb diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-goolf-1.4.10-zlib-1.2.7.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-goolf-1.4.10-zlib-1.2.7.eb new file mode 100644 index 0000000000..a0a7586662 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-goolf-1.4.10-zlib-1.2.7.eb @@ -0,0 +1,22 @@ +name = 'HDF5' +version = '1.8.12' +versionsuffix = '-zlib-1.2.7' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['configure_libtool.patch'] + +dependencies = [ + ('zlib', '1.2.7'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-4.1.13-zlib-1.2.7.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-4.1.13-zlib-1.2.7.eb new file mode 100644 index 0000000000..b13df6dfc3 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.12-ictce-4.1.13-zlib-1.2.7.eb @@ -0,0 +1,26 @@ +name = 'HDF5' +version = '1.8.12' +versionsuffix = '-zlib-1.2.7' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'ictce', 'version': '4.1.13'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5-1.8.12_configure_ictce.patch', + 'configure_libtool.patch', + 'HDF5-%(version)s_mpi-includes_order_fix.patch', +] + +dependencies = [ + ('zlib', '1.2.7'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.2.1-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-goolf-1.4.10-Python-2.7.3.eb new file mode 100644 index 0000000000..804c376cf4 --- /dev/null +++ b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-goolf-1.4.10-Python-2.7.3.eb @@ -0,0 +1,37 @@ +easyblock = "PythonPackage" + +name = 'h5py' +version = '2.2.1' + +homepage = 'http://www.h5py.org/' +description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, + version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous + amounts of data.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonver = '2.7.3' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +# make sure that MPI features are enabled (new in h5py v2.2) +makeopts = '--mpi' + +dependencies = [ + (python, pythonver), + ('HDF5', '1.8.12', '-zlib-1.2.7'), + ('mpi4py', '1.3', versionsuffix), # required for MPI support + ('Cython', '0.19.1', versionsuffix), # required to build h5py with MPI support +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/%%(name)s' % pythonshortver], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-4.1.13-Python-2.7.3.eb new file mode 100644 index 0000000000..d366366f0e --- /dev/null +++ b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-4.1.13-Python-2.7.3.eb @@ -0,0 +1,37 @@ +easyblock = "PythonPackage" + +name = 'h5py' +version = '2.2.1' + +homepage = 'http://www.h5py.org/' +description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, + version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous + amounts of data.""" + +toolchain = {'name': 'ictce', 'version': '4.1.13'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonver = '2.7.3' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +# make sure that MPI features are enabled (new in h5py v2.2) +makeopts = '--mpi' + +dependencies = [ + (python, pythonver), + ('HDF5', '1.8.12', '-zlib-1.2.7'), + ('mpi4py', '1.3', versionsuffix), # required for MPI support + ('Cython', '0.19.1', versionsuffix), # required to build h5py with MPI support +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/%%(name)s' % pythonshortver], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/horton/horton-1.2.1-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.2.1-goolf-1.4.10-Python-2.7.3.eb new file mode 100644 index 0000000000..a27558ac24 --- /dev/null +++ b/easybuild/easyconfigs/h/horton/horton-1.2.1-goolf-1.4.10-Python-2.7.3.eb @@ -0,0 +1,38 @@ +easyblock = "PythonPackage" + +name = 'horton' +version = '1.2.1' + +homepage = 'http://theochem.github.io/horton' +description = """Horton is a development platform for electronic structure methods.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['https://github.com/theochem/horton/releases/download/%s' % version] +sources = [SOURCE_TAR_GZ] + +python = "Python" +pythonversion = '2.7.3' +pythonshortversion = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('Cython', '0.19.1', versionsuffix), + ('h5py', '2.2.1', versionsuffix), + ('matplotlib', '1.2.1', versionsuffix), + ('sympy', '0.7.2', versionsuffix), + ('libint2', '2.0.3'), + ('libxc', '2.0.3'), +] + +# disable tests that require X11 by specifying "backend: agg" in matplotlibrc +runtest = 'export MATPLOTLIBRC=$PWD; echo "backend: agg" > $MATPLOTLIBRC/matplotlibrc; python setup.py build_ext -i; nosetests -v' + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/horton' % pythonshortversion] +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/h/horton/horton-1.2.1-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.2.1-ictce-4.1.13-Python-2.7.3.eb new file mode 100644 index 0000000000..57a24aa060 --- /dev/null +++ b/easybuild/easyconfigs/h/horton/horton-1.2.1-ictce-4.1.13-Python-2.7.3.eb @@ -0,0 +1,38 @@ +easyblock = "PythonPackage" + +name = 'horton' +version = '1.2.1' + +homepage = 'http://theochem.github.io/horton' +description = """Horton is a development platform for electronic structure methods.""" + +toolchain = {'name': 'ictce', 'version': '4.1.13'} + +source_urls = ['https://github.com/theochem/horton/releases/download/%s' % version] +sources = [SOURCE_TAR_GZ] + +python = "Python" +pythonversion = '2.7.3' +pythonshortversion = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('Cython', '0.19.1', versionsuffix), + ('h5py', '2.2.1', versionsuffix), + ('matplotlib', '1.2.1', versionsuffix), + ('sympy', '0.7.2', versionsuffix), + ('libint2', '2.0.3'), + ('libxc', '2.0.3'), +] + +# disable tests that require X11 by specifying "backend: agg" in matplotlibrc +runtest = 'export MATPLOTLIBRC=$PWD; echo "backend: agg" > $MATPLOTLIBRC/matplotlibrc; python setup.py build_ext -i; nosetests -v' + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/horton' % pythonshortversion] +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.3-goolf-1.4.10.eb new file mode 100644 index 0000000000..eeb4529f02 --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.3-goolf-1.4.10.eb @@ -0,0 +1,30 @@ +name = 'libxc' +version = '2.0.3' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'opt': True} + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS" FCCPP="/lib/cpp -ansi" --enable-shared' + +# From the libxc mailing list +# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect +# a fully working testsuite soon (unless someone wants to volunteer to do +# it, of course ) In the meantime, unless the majority of the tests +# fail, your build should be fine. +#runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.3-ictce-4.1.13.eb new file mode 100644 index 0000000000..321de01d28 --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.3-ictce-4.1.13.eb @@ -0,0 +1,30 @@ +name = 'libxc' +version = '2.0.3' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +toolchain = {'name': 'ictce', 'version': '4.1.13'} +toolchainopts = {'opt': True} + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' + +# From the libxc mailing list +# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect +# a fully working testsuite soon (unless someone wants to volunteer to do +# it, of course ) In the meantime, unless the majority of the tests +# fail, your build should be fine. +#runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' -- GitLab From 1e61038744462b41e482329009a3143ec21ab4b5 Mon Sep 17 00:00:00 2001 From: pescobar Date: Wed, 2 Apr 2014 22:44:07 +0200 Subject: [PATCH 0013/1217] moved easyblock to first line --- .../easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb index da0f8cb987..dea38c864b 100644 --- a/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb @@ -3,11 +3,11 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'MakeCp' + name = 'DIALIGN-TX' version = '1.0.2' -easyblock = 'MakeCp' - homepage = 'http://dialign-tx.gobics.de/' description = """ greedy and progressive approaches for segment-based multiple sequence alignment """ -- GitLab From f485e1f7d79912db76692e8d27e6f2b619e6f82f Mon Sep 17 00:00:00 2001 From: pescobar Date: Wed, 2 Apr 2014 22:45:57 +0200 Subject: [PATCH 0014/1217] modified toolchainopts --- .../d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb | 9 ++++++++- 1 file changed, 8 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb index dea38c864b..e814686b4d 100644 --- a/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb @@ -13,12 +13,19 @@ description = """ greedy and progressive approaches for segment-based multiple sequence alignment """ toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True} source_urls = [homepage] sources = ['%(name)s_%(version)s.tar.gz'] start_dir = 'source' -makeopts = 'CPPFLAGS="-O3 -funroll-loops -march=native -mfpmath=sse -msse -mmmx"' + +# These are the hardcoded CPPFLAGS in the makefile: +# CPPFLAGS=-O3 -funroll-loops -march=i686 -mfpmath=sse -msse -mmmx +# +# We overwrite CPPFLAGS in the makefile with easybuild toolchainopts which will be something like +# CPPFLAGS=-O3 -funroll-loops -march=native" +makeopts = 'CPPFLAGS="$CPPFLAGS"' files_to_copy = [(['dialign-tx'], 'bin')] -- GitLab From 38696b3ba189737da986398f408d49fa21b57cb7 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Wed, 9 Apr 2014 16:36:16 +0200 Subject: [PATCH 0015/1217] added FDS --- .../f/FDS/FDS-r18915-goolf-1.4.10.eb | 25 +++++++++++++++++++ .../easyconfigs/f/FDS/FDS_makefile.patch | 15 +++++++++++ 2 files changed, 40 insertions(+) create mode 100644 easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb create mode 100644 easybuild/easyconfigs/f/FDS/FDS_makefile.patch diff --git a/easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb new file mode 100644 index 0000000000..532468b97f --- /dev/null +++ b/easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb @@ -0,0 +1,25 @@ +name = 'FDS' +version = 'r18915' + +homepage = 'https://code.google.com/p/fds-smv/' +description = """ + Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and + heat transport from fires. +""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +# just run make in the install dir +skipsteps = ['configure', 'install'] +buildininstalldir = True + +patches = ['FDS_makefile.patch'] +modextrapaths = {'bin': 'FDS_Source'} + +sanity_check_paths = { + 'files': ['FDS_Source/fds'], + 'dirs': [], +} +moduleclass = 'phys' diff --git a/easybuild/easyconfigs/f/FDS/FDS_makefile.patch b/easybuild/easyconfigs/f/FDS/FDS_makefile.patch new file mode 100644 index 0000000000..d9c7c2a315 --- /dev/null +++ b/easybuild/easyconfigs/f/FDS/FDS_makefile.patch @@ -0,0 +1,15 @@ +--- makefile (revision 18916) ++++ makefile (working copy) +@@ -29,9 +29,9 @@ + + # General Purpose Rules + +-no_target: +- @echo \******** You did not specify a make target \******** +- @echo Please read the comments at the top of the makefile ++no_target: FCOMPL = $(F90) ++no_target: setup $(obj_serial) ++ $(FCOMPL) $(FFLAGS) $(LFLAGS) -o fds $(obj_serial) + + setup: + %.o : %.mod -- GitLab From 2178f44c0af1b92efed808dd242edaa2e7e04e26 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Wed, 9 Apr 2014 16:45:43 +0200 Subject: [PATCH 0016/1217] use mpi and add to path, not to bin --- easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb index 532468b97f..d49cfa69e6 100644 --- a/easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb @@ -8,7 +8,7 @@ description = """ """ toolchain = {'name': 'goolf', 'version': '1.4.10'} -toolchainopts = {'pic': True} +toolchainopts = {'pic': True, 'usempi': True} sources = [SOURCE_TAR_GZ] # just run make in the install dir @@ -16,7 +16,7 @@ skipsteps = ['configure', 'install'] buildininstalldir = True patches = ['FDS_makefile.patch'] -modextrapaths = {'bin': 'FDS_Source'} +modextrapaths = {'PATH': 'FDS_Source'} sanity_check_paths = { 'files': ['FDS_Source/fds'], -- GitLab From 570d6004b3a3dece9f0d4d2964b5a7576d211573 Mon Sep 17 00:00:00 2001 From: admin6 Date: Wed, 9 Apr 2014 16:47:00 +0200 Subject: [PATCH 0017/1217] added ictce easyconfig --- .../f/FDS/FDS-r18915-ictce-5.5.0.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/f/FDS/FDS-r18915-ictce-5.5.0.eb diff --git a/easybuild/easyconfigs/f/FDS/FDS-r18915-ictce-5.5.0.eb b/easybuild/easyconfigs/f/FDS/FDS-r18915-ictce-5.5.0.eb new file mode 100644 index 0000000000..ef3f6f0041 --- /dev/null +++ b/easybuild/easyconfigs/f/FDS/FDS-r18915-ictce-5.5.0.eb @@ -0,0 +1,24 @@ +name = 'FDS' +version = 'r18915' + +homepage = 'https://code.google.com/p/fds-smv/' +description = """ + Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and + heat transport from fires. +""" +toolchain = {'name': 'ictce', 'version': '5.5.0'} # tweaked by EasyBuild (was: {'name': 'goolf', 'version': '1.4.10'}) +toolchainopts = {'pic': True, 'usempi': True} + +sources = [SOURCE_TAR_GZ] +# just run make in the install dir +skipsteps = ['configure', 'install'] +buildininstalldir = True + +patches = ['FDS_makefile.patch'] +modextrapaths = {'PATH': 'FDS_Source'} + +sanity_check_paths = { + 'files': ['FDS_Source/fds'], + 'dirs': [], +} +moduleclass = 'phys' -- GitLab From fb67f5ffa111fa9aad08dba2140ec82b93958b1d Mon Sep 17 00:00:00 2001 From: pescobar Date: Thu, 10 Apr 2014 22:13:57 +0200 Subject: [PATCH 0018/1217] Minimac-2013.7.17-goolf-1.4.10.eb --- .../Minimac/Minimac-2013.7.17-goolf-1.4.10.eb | 45 +++++++++++++++++++ 1 file changed, 45 insertions(+) create mode 100644 easybuild/easyconfigs/m/Minimac/Minimac-2013.7.17-goolf-1.4.10.eb diff --git a/easybuild/easyconfigs/m/Minimac/Minimac-2013.7.17-goolf-1.4.10.eb b/easybuild/easyconfigs/m/Minimac/Minimac-2013.7.17-goolf-1.4.10.eb new file mode 100644 index 0000000000..6d59aab26d --- /dev/null +++ b/easybuild/easyconfigs/m/Minimac/Minimac-2013.7.17-goolf-1.4.10.eb @@ -0,0 +1,45 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock='MakeCp' + +name = 'Minimac' +version = '2013.7.17' +versionsuffix = '-beta' + +homepage = 'http://genome.sph.umich.edu/wiki/Minimac' +description = """ Minimac is a low memory, computationally efficient implementation + of the MaCH algorithm for genotype imputation. It is designed to work on phased genotypes + and can handle very large reference panels with hundreds or thousands of haplotypes. + The name has two parts. The first, 'mini', refers to the modest amount of computational + resources it requires. The second, 'mac', is short hand for MaCH, our widely used + algorithm for genotype imputation. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +# the source file doesn't include version in the name so probably you should check +# in their website if the version number and date is correct +source_urls = ['http://www.sph.umich.edu/csg/cfuchsb/'] +sources = ['%(namelower)s.src.tgz'] + +# firt move to folder libStatGen to run make +# then move to foler minimac to run make +premakeopts = ["cd libStatGen && ", "cd minimac && "] + +# in libStatGen folder run just "make" +# in minimac folder run "make opt && make openmp" +makeopts = ["", " opt && make openmp"] + +# parallel build fails +parallel = 1 + +files_to_copy = [(["minimac/bin/minimac", "minimac/bin/minimac-omp"], "bin")] + +sanity_check_paths = { + 'files': ['bin/minimac', 'bin/minimac-omp'], + 'dirs': [] +} + +moduleclass = 'bio' -- GitLab From 145b5123287081069250f6763c3c881e2b3377cf Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Fri, 18 Apr 2014 09:36:07 +0200 Subject: [PATCH 0019/1217] add Chapel/1.9 builds Signed-off-by: Fotis Georgatos --- .../c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb | 45 +++++++++++++++++++ .../c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb | 45 +++++++++++++++++++ 2 files changed, 90 insertions(+) create mode 100644 easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb create mode 100644 easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb new file mode 100644 index 0000000000..6784494f88 --- /dev/null +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb @@ -0,0 +1,45 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +name = 'Chapel' +version = '1.9.0' + +homepage = 'http://chapel.cray.com' +description = """ Chapel is an emerging parallel programming language whose design and development + is being led by Cray Inc. Chapel is designed to improve the productivity of high-end computer users + while also serving as a portable parallel programming model that can be used on commodity clusters + or desktop multicore systems. Chapel strives to vastly improve the programmability of large-scale + parallel computers while matching or beating the performance and portability of current programming + models like MPI.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +unpack_options = '--strip-components=1' + +# parallel build fails +parallel = 1 + +libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.pthreads.tmr-generic.mem-default.atomics-intrinsics.' +libpath += 'gmp-none.re-none.wide-struct.fs-none' + +sanity_check_paths = { + 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], + 'dirs': [], +} + +modextrapaths = { + 'PATH': 'util', + 'CHPL_HOME': '', +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb new file mode 100644 index 0000000000..d490802016 --- /dev/null +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb @@ -0,0 +1,45 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +name = 'Chapel' +version = '1.9.0' + +homepage = 'http://chapel.cray.com' +description = """ Chapel is an emerging parallel programming language whose design and development + is being led by Cray Inc. Chapel is designed to improve the productivity of high-end computer users + while also serving as a portable parallel programming model that can be used on commodity clusters + or desktop multicore systems. Chapel strives to vastly improve the programmability of large-scale + parallel computers while matching or beating the performance and portability of current programming + models like MPI.""" + +toolchain = {'name': 'goolf', 'version': '1.6.10'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +unpack_options = '--strip-components=1' + +# parallel build fails +parallel = 1 + +libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.pthreads.tmr-generic.mem-default.atomics-intrinsics.' +libpath += 'gmp-none.re-none.wide-struct.fs-none' + +sanity_check_paths = { + 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], + 'dirs': [], +} + +modextrapaths = { + 'PATH': 'util', + 'CHPL_HOME': '', +} + +moduleclass = 'lang' -- GitLab From b8d4d38805738e9a7aad75f0d5b0c91eedb03ad6 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Fri, 18 Apr 2014 10:55:37 +0200 Subject: [PATCH 0020/1217] rewire libpath for Chapel/1.8* Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb | 3 ++- easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb index cb35b40757..20d4c72778 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb @@ -29,7 +29,8 @@ unpack_options = '--strip-components=1' # parallel build fails parallel = 1 -libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.pthreads.tmr-generic.mem-default.atomics-intrinsics.' +libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.' +libpath += 'pthreads.tmr-generic.mem-default.atomics-intrinsics.' libpath += 'gmp-none.re-none.wide-struct.fs-none' sanity_check_paths = { diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb index 287a7c1d2b..abaa31f971 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb @@ -29,7 +29,8 @@ unpack_options = '--strip-components=1' # parallel build fails parallel = 1 -libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.pthreads.tmr-generic.mem-default.atomics-intrinsics.' +libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.' +libpath += 'pthreads.tmr-generic.mem-default.atomics-intrinsics.' libpath += 'gmp-none.re-none.wide-struct.fs-none' sanity_check_paths = { -- GitLab From fe24ba1165875db7a6f37a5e4912dfe54b2efc72 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Fri, 18 Apr 2014 10:59:06 +0200 Subject: [PATCH 0021/1217] rewire libpath for Chapel/1.9* Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb | 5 +++-- easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb | 5 +++-- 2 files changed, 6 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb index 6784494f88..fdca4b6365 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb @@ -29,8 +29,9 @@ unpack_options = '--strip-components=1' # parallel build fails parallel = 1 -libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.pthreads.tmr-generic.mem-default.atomics-intrinsics.' -libpath += 'gmp-none.re-none.wide-struct.fs-none' +libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.' +libpath += 'tmr-generic.mem-default.atomics-intrinsics.' +libpath += 'gmp-none.hwloc-none.re-none.wide-struct.fs-none' sanity_check_paths = { 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb index d490802016..b016c3ebdc 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb @@ -29,8 +29,9 @@ unpack_options = '--strip-components=1' # parallel build fails parallel = 1 -libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.pthreads.tmr-generic.mem-default.atomics-intrinsics.' -libpath += 'gmp-none.re-none.wide-struct.fs-none' +libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.' +libpath += 'tmr-generic.mem-default.atomics-intrinsics.' +libpath += 'gmp-none.hwloc-none.re-none.wide-struct.fs-none' sanity_check_paths = { 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], -- GitLab From 3676c30026aadd8fa29f4740ece2ca80c8e0bd18 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Fri, 18 Apr 2014 11:25:54 +0200 Subject: [PATCH 0022/1217] rewire libpath for Chapel/1.7* Signed-off-by: Fotis Georgatos --- .../easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb index cfdb1760fd..3ad8d88c60 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb @@ -29,6 +29,14 @@ unpack_options = '--strip-components=1' # parallel build fails parallel = 1 +libpath = 'lib/linux64/gnu/comm-none/substrate-none/seg-none/' +libpath += 'mem-default/tasks-fifo/threads-pthreads/atomics-intrinsics/' + +sanity_check_paths = { + 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], + 'dirs': [], +} + modextrapaths = { 'PATH': 'util', 'CHPL_HOME': '', -- GitLab From 39c88f174562a6fb1f14be50b706846814c6f109 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Fri, 18 Apr 2014 11:26:00 +0200 Subject: [PATCH 0023/1217] rewire libpath for Chapel/1.6* Signed-off-by: Fotis Georgatos --- .../c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb | 8 ++++++++ .../easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb | 8 ++++++++ 2 files changed, 16 insertions(+) diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb index 0ecf5d3f45..7185beb5c4 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb @@ -28,6 +28,14 @@ unpack_options = '--strip-components=1' parallel = 1 # parallel build may fail +libpath = 'lib/linux64/gnu/comm-none/substrate-none/seg-none/' +libpath += 'mem-default/tasks-fifo/threads-pthreads/atomics-intrinsics/' + +sanity_check_paths = { + 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], + 'dirs': [], +} + modextrapaths = { 'PATH': 'util', 'CHPL_HOME': '', diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb index 93406cb2aa..29b89b95c7 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb @@ -29,6 +29,14 @@ unpack_options = '--strip-components=1' # parallel build fails parallel = 1 +libpath = 'lib/linux64/gnu/comm-none/substrate-none/seg-none/' +libpath += 'mem-default/tasks-fifo/threads-pthreads/atomics-intrinsics/' + +sanity_check_paths = { + 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], + 'dirs': [], +} + modextrapaths = { 'PATH': 'util', 'CHPL_HOME': '', -- GitLab From cc0d2fa413f52e0f5ba4a1410114db29fc4ad2fc Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Fri, 18 Apr 2014 11:41:14 +0200 Subject: [PATCH 0024/1217] add check clause for Chapel/1.9* Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb | 2 ++ 2 files changed, 4 insertions(+) diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb index fdca4b6365..ce2f38a782 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb @@ -29,6 +29,8 @@ unpack_options = '--strip-components=1' # parallel build fails parallel = 1 +installopts = ' && make check' + libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.' libpath += 'tmr-generic.mem-default.atomics-intrinsics.' libpath += 'gmp-none.hwloc-none.re-none.wide-struct.fs-none' diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb index b016c3ebdc..bb497aabb5 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb @@ -29,6 +29,8 @@ unpack_options = '--strip-components=1' # parallel build fails parallel = 1 +installopts = ' && make check' + libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.' libpath += 'tmr-generic.mem-default.atomics-intrinsics.' libpath += 'gmp-none.hwloc-none.re-none.wide-struct.fs-none' -- GitLab From c892f5f15894df8c92fd5610e18b078ea8a61205 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Fri, 18 Apr 2014 12:00:22 +0200 Subject: [PATCH 0025/1217] ahem, do not impersonate others Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb index ce2f38a782..ebb147c47f 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2014 # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb index bb497aabb5..3d8806025a 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2014 # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ -- GitLab From fa076a1d32ebb4d151bb7c5c3c26e886533daf58 Mon Sep 17 00:00:00 2001 From: wiktor Date: Wed, 7 May 2014 14:06:01 +0200 Subject: [PATCH 0026/1217] BEDOPS 2.4.2 --- .../b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb diff --git a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb new file mode 100644 index 0000000000..90de128946 --- /dev/null +++ b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez, Wiktor Jurkowski +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# Babraham Institute, UK + +easyblock = 'MakeCp' + +name = "BEDOPS" +version = "2.4.2" + +homepage = 'https://github.com/bedops/bedops' +description = """ BEDOPS is an open-source command-line toolkit that performs highly + efficient and scalable Boolean and other set operations, statistical calculations, + archiving, conversion and other management of genomic data of arbitrary scale.""" + +# this application requires GCC-4.8.x or higher +# be aware if you switch to a different toolchain +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +source_urls = ['https://github.com/bedops/bedops/archive/'] +sources = ['v%(version)s.tar.gz'] + +makeopts = ' static && make install' + +parallel = 1 + +files_to_copy = ["bin"] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bedmap", "bam2bed" , "sort-bed", + "starchcat", "vcf2bed", "wig2bed", + "gtf2bed", "bedops", "wig2bed"]], + 'dirs': [] +} + +moduleclass = 'bio' -- GitLab From 9636fd242594808339d175603b8cd55c4660940a Mon Sep 17 00:00:00 2001 From: wiktor Date: Wed, 14 May 2014 19:00:38 +0200 Subject: [PATCH 0027/1217] updated BEDOPS and BEDTools --- .../BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb | 27 +++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb new file mode 100644 index 0000000000..1631b47200 --- /dev/null +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb @@ -0,0 +1,27 @@ +# Author: Pablo Escobar Lopez; Wiktor Jurkowski +# Swiss Institute of Bioinformatics (SIB), Biozentrum - University of Basel +# Babraham Institute, UK + +easyblock = 'MakeCp' + +name = 'BEDTools' +version = '2.19.1' + +homepage = "https://github.com/arq5x/bedtools2" +description = """The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps + and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, + and SAM/BAM.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['https://github.com/arq5x/bedtools2/archive/'] +sources = ['v%(version)s.tar.gz'] + +files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], + 'dirs': files_to_copy, +} + +moduleclass = 'bio' -- GitLab From cb97556ae694ad5383ade61cb277419b99eff0ab Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Mon, 19 May 2014 15:54:55 +0200 Subject: [PATCH 0028/1217] Add Exonerate builds, adjust FSA to include them by default Signed-off-by: Fotis Georgatos --- .../Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb | 27 +++++++++++++++++++ .../Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb | 27 +++++++++++++++++++ .../f/FSA/FSA-1.15.8-goolf-1.4.10.eb | 22 ++++++++------- .../f/FSA/FSA-1.15.8-ictce-5.3.0.eb | 22 ++++++++------- 4 files changed, 80 insertions(+), 18 deletions(-) create mode 100644 easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb create mode 100644 easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb new file mode 100644 index 0000000000..8f74cb642e --- /dev/null +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb @@ -0,0 +1,27 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +name = 'Exonerate' +version = '2.2.0' + +homepage = 'http://www.ebi.ac.uk/~guy/exonerate/' +description = """ Exonerate is a generic tool for pairwise sequence comparison. + It allows you to align sequences using a many alignment models, using either + exhaustive dynamic programming, or a variety of heuristics. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = [homepage] +sources = [SOURCELOWER_TAR_GZ] + +# parallel build fails +parallel = 1 + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["exonerate", "fastaclip", "fastaoverlap"]], + 'dirs': ["share"], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb new file mode 100644 index 0000000000..3d15ae6c32 --- /dev/null +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb @@ -0,0 +1,27 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +name = 'Exonerate' +version = '2.2.0' + +homepage = 'http://www.ebi.ac.uk/~guy/exonerate/' +description = """ Exonerate is a generic tool for pairwise sequence comparison. + It allows you to align sequences using a many alignment models, using either + exhaustive dynamic programming, or a variety of heuristics. """ + +toolchain = {'name': 'ictce', 'version': '5.3.0'} + +source_urls = [homepage] +sources = [SOURCELOWER_TAR_GZ] + +# parallel build fails +parallel = 1 + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["exonerate", "fastaclip", "fastaoverlap"]], + 'dirs': ["share"], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb index af8b162d43..a9915dbdff 100644 --- a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 University of Luxembourg, Swiss Institute of Bioinformatics +# Authors:: Fotis Georgatos, Pablo Escobar Lopez # License:: MIT/GPL # $Id$ # @@ -13,21 +13,25 @@ name = "FSA" version = "1.15.8" -homepage = "http://fsa.sourceforge.net" -description = """FSA is a probabilistic multiple sequence alignment algorithm - which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.""" +homepage = 'http://fsa.sourceforge.net/' +description = """ FSA:Fast Statistical Alignment, is a probabilistic multiple sequence + alignment algorithm which uses a distance-based approach to aligning homologous protein, + RNA or DNA sequences.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': True, 'optarch': True} -source_urls = ["http://downloads.sourceforge.net/project/fsa/"] +source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] -dependencies = [('MUMmer', '3.23')] +dependencies = [ + ('MUMmer', '3.23'), + ('Exonerate', '2.2.0') +] sanity_check_paths = { - 'files': ["bin/fsa"], - 'dirs': [] + 'files': ["bin/%s" % x for x in ["fsa", "gapcleaner", "map_gff_coords"]], + 'dirs': [], } moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb index ea38265ab5..037a69fcc4 100644 --- a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 University of Luxembourg, Swiss Institute of Bioinformatics +# Authors:: Fotis Georgatos, Pablo Escobar Lopez # License:: MIT/GPL # $Id$ # @@ -13,21 +13,25 @@ name = "FSA" version = "1.15.8" -homepage = "http://fsa.sourceforge.net" -description = """FSA is a probabilistic multiple sequence alignment algorithm - which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.""" +homepage = 'http://fsa.sourceforge.net/' +description = """ FSA:Fast Statistical Alignment, is a probabilistic multiple sequence + alignment algorithm which uses a distance-based approach to aligning homologous protein, + RNA or DNA sequences.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True, 'optarch': True} -source_urls = ["http://downloads.sourceforge.net/project/fsa/"] +source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] -dependencies = [('MUMmer', '3.23')] +dependencies = [ + ('MUMmer', '3.23'), + ('Exonerate', '2.2.0') +] sanity_check_paths = { - 'files': ["bin/fsa"], - 'dirs': [] + 'files': ["bin/%s" % x for x in ["fsa", "gapcleaner", "map_gff_coords"]], + 'dirs': [], } moduleclass = 'bio' -- GitLab From 141a4e355ac7afa5fc9deb19fba5accc2449c5be Mon Sep 17 00:00:00 2001 From: Benjamin Roberts Date: Tue, 27 May 2014 16:55:39 +1200 Subject: [PATCH 0029/1217] New config file for ORCA 3.0.2 based on ORCA 3.0.0 --- .../o/ORCA/ORCA-3_0_2-linux_x86-64.eb | 32 +++++++++++++++++++ 1 file changed, 32 insertions(+) create mode 100644 easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb new file mode 100644 index 0000000000..dd9a1e76e6 --- /dev/null +++ b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb @@ -0,0 +1,32 @@ +easyblock = "PackedBinary" + +name = "ORCA" +version = "3_0_2-linux_x86-64" # tweaked by EasyBuild (was: '3_0_0-linux_x86-64_openmpi_165') + +homepage = 'http://www.thch.uni-bonn.de/tc/orca/' +description = """ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry + with specific emphasis on spectroscopic properties of open-shell molecules. + It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- + and multireference correlated ab initio methods. + It can also treat environmental and relativistic effects.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['%%(namelower)s_%s_%s.tbz' % (version.split('-')[0], '-'.join(version.split('-')[1:]))] + +dependencies = [('OpenMPI', '1.6.5', '-GCC-4.7.2')] + +sanity_check_paths = { + 'files': ['orca_%s%s' % (x,y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', + 'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc', + 'rocis', 'scf', 'scfgrad', 'soc'] + for y in ["", "_mpi"]] + \ + ['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib', + 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', + 'md', 'mergefrag', 'ndoint', 'numfreq', 'plot', + 'pltvib', 'pop', 'rel', 'vib', 'vpot']] + \ + ['orca', 'otool_cosmo'], + 'dirs': [], +} + +moduleclass = 'chem' -- GitLab From 5cfe6a75809aaee1d332c2d66ed5d586c911169d Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 10 Jun 2014 02:54:37 +0200 Subject: [PATCH 0030/1217] amend Exonerate easyconfigs with GLib dep Signed-off-by: Fotis Georgatos --- .../easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb | 2 ++ .../easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb | 2 ++ 2 files changed, 4 insertions(+) diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb index 8f74cb642e..60550f5635 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb @@ -16,6 +16,8 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = [homepage] sources = [SOURCELOWER_TAR_GZ] +dependencies = [('GLib', '2.34.3')] + # parallel build fails parallel = 1 diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb index 3d15ae6c32..69f1442377 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb @@ -16,6 +16,8 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = [homepage] sources = [SOURCELOWER_TAR_GZ] +dependencies = [('GLib', '2.34.3')] + # parallel build fails parallel = 1 -- GitLab From 90b430b06863e8eda599cd3d042baf0c50da7e5f Mon Sep 17 00:00:00 2001 From: pescobar Date: Tue, 1 Jul 2014 16:12:42 +0200 Subject: [PATCH 0031/1217] added newer release --- .../GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb new file mode 100644 index 0000000000..ae02b74dda --- /dev/null +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +name = 'GMAP-GSNAP' +version = "2014-06-10" + +homepage = 'http://research-pub.gene.com/gmap/' +description = ''' + GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences + GSNAP: Genomic Short-read Nucleotide Alignment Program ''' + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +# with this deps you can use standard compressed files +# to support files in gobby format take a look at README for extra dependencies +# http://research-pub.gene.com/gmap/src/README +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), +] + +source_urls = ['http://research-pub.gene.com/gmap/src/'] +sources = [SOURCELOWER_TAR_GZ] + +# you can change the MAX_READLENGTH for GSNAP with something like this. +# details in the README http://research-pub.gene.com/gmap/src/README +#configopts = 'MAX_READLENGTH=250' + +sanity_check_paths = { + 'files': ['bin/gmap', 'bin/gsnap'], + 'dirs': [], +} + +moduleclass = 'bio' + -- GitLab From 7c463c7c7a9a2fdd69601fbc295a28a019059118 Mon Sep 17 00:00:00 2001 From: pescobar Date: Tue, 8 Jul 2014 21:02:33 +0200 Subject: [PATCH 0032/1217] cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb --- ...utadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb | 38 +++++++++++++++++++ 1 file changed, 38 insertions(+) create mode 100644 easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb new file mode 100644 index 0000000000..3a32415096 --- /dev/null +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb @@ -0,0 +1,38 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics (SIB) +# Biozentrum - University of Basel + +easyblock = "PythonPackage" + +name = 'cutadapt' +version = '1.4.1' + +homepage = 'http://code.google.com/p/cutadapt/' +description = """ cutadapt removes adapter sequences + from high-throughput sequencing data. This is usually + necessary when the read length of the sequencing machine + is longer than the molecule that is sequenced, for + example when sequencing microRNAs. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['https://github.com/marcelm/cutadapt/archive/'] +sources = ['v%(version)s.tar.gz'] + +python = 'Python' +pyver = '2.7.5' +pyshortver = '.'.join(pyver.split('.')[:2]) + +versionsuffix = "-%s-%s" % (python, pyver) + +dependencies = [ + (python, pyver), +] + +sanity_check_paths = { + 'files': ['bin/cutadapt'], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From 3f3d46701889968992ded92b3aec54bc67fa610e Mon Sep 17 00:00:00 2001 From: Jordi Blasco Date: Wed, 23 Jul 2014 13:06:18 +1200 Subject: [PATCH 0033/1217] Chapel-1.9.0 Chapel-1.9.0 compiled with goolf-1.5.14 --- .../c/Chapel/Chapel-1.9.0-goolf-1.5.14.eb | 44 +++++++++++++++++++ 1 file changed, 44 insertions(+) create mode 100644 easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.5.14.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.5.14.eb new file mode 100644 index 0000000000..80c79f1859 --- /dev/null +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.5.14.eb @@ -0,0 +1,44 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Authors:: Jordi Blasco (NeSI) +# License:: MIT/GPL +# $Id$ +## + +name = 'Chapel' +version = '1.9.0' + +homepage = 'http://chapel.cray.com' +description = """ Chapel is an emerging parallel programming language whose design and development + is being led by Cray Inc. Chapel is designed to improve the productivity of high-end computer users + while also serving as a portable parallel programming model that can be used on commodity clusters + or desktop multicore systems. Chapel strives to vastly improve the programmability of large-scale + parallel computers while matching or beating the performance and portability of current programming + models like MPI.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +unpack_options = '--strip-components=1' + +# parallel build fails +parallel = 1 + +libpath = 'lib/linux64.gnu.loc-flat.tasks-fifo.tmr-generic.mem-default.atomics-intrinsics.' +libpath += 'gmp-none.hwloc-none.re-none.wide-struct.fs-none' + +sanity_check_paths = { + 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], + 'dirs': [], +} + +modextrapaths = { + 'PATH': 'util', + 'CHPL_HOME': '', +} + +moduleclass = 'lang' -- GitLab From d6df238053c738cfbb0f1d23ff45671f31b359cc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 5 Aug 2014 13:32:14 +0200 Subject: [PATCH 0034/1217] add easyconfig for RELION + deps --- .../f/FFTW/FFTW-3.3.4-intel-2014b.eb | 32 +++++++++++++++++++ .../f/FLTK/FLTK-1.3.2-intel-2014b.eb | 27 ++++++++++++++++ .../r/RELION/RELION-1.3-intel-2014b.eb | 21 ++++++++++++ .../t/Tcl/Tcl-8.5.12-intel-2014b.eb | 19 +++++++++++ .../easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb | 19 +++++++++++ 5 files changed, 118 insertions(+) create mode 100644 easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb create mode 100644 easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb create mode 100644 easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb create mode 100644 easybuild/easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb new file mode 100644 index 0000000000..1c18726997 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb @@ -0,0 +1,32 @@ +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +# no quad precision, requires GCC v4.6 or higher +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', + 'l', 'l_mpi', 'l_omp']], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb new file mode 100644 index 0000000000..c374191d19 --- /dev/null +++ b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb @@ -0,0 +1,27 @@ +# +# author: Dina Mahmoud Ibrahim ( Cairo University ) +# +name = 'FLTK' +version = '1.3.2' + +homepage = 'http://www.fltk.org' +description = """FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, + and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL + and its built-in GLUT emulation.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = ['%(namelower)s-%(version)s-source.tar.gz'] +source_urls = ['http://fltk.org/pub/%(namelower)s/%(version)s/'] + +dependencies = [ + ('Tcl', '8.5.12'), + ('Tk', '8.5.12'), +] + +sanity_check_paths = { + 'files': ['bin/fltk-config','bin/fluid'], + 'dirs': ['lib'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb new file mode 100644 index 0000000000..1753fd2512 --- /dev/null +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb @@ -0,0 +1,21 @@ +name = 'RELION' +version = '1.3' + +homepage = 'http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page' +description = """RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer + program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class + averages in electron cryo-microscopy (cryo-EM).""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://www2.mrc-lmb.cam.ac.uk/groups/scheres/18jun14'] +sources = [SOURCELOWER_TAR_BZ2] + +dependencies = [ + ('FFTW', '3.3.4'), + ('FLTK', '1.3.2'), +] + +configopts = ['--enable-mpi'] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb new file mode 100644 index 0000000000..f177c6c0ab --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb @@ -0,0 +1,19 @@ +name = 'Tcl' +version = '8.5.12' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, + suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb new file mode 100644 index 0000000000..77ea7e4226 --- /dev/null +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb @@ -0,0 +1,19 @@ +name = 'Tk' +version = '8.5.12' + +homepage = 'http://www.tcl.tk/' +description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building + a graphical user interface (GUI) in many different programming languages.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +dependencies = [('Tcl', version)] + +configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib CFLAGS="-I$EBROOTTCL/include"' + +start_dir = 'unix' + +moduleclass = 'vis' -- GitLab From 36a0f0ac823d04ce97487cabaf80f8ee3580b49a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 7 Aug 2014 14:42:30 +0200 Subject: [PATCH 0035/1217] also build fftw3_threads libraries, and enhance sanity checks --- .../f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb | 6 +++--- .../f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb | 5 ++--- .../f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb | 5 ++--- .../f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb | 6 +++--- .../f/FFTW/FFTW-3.3.3-cgmpich-1.1.6.eb | 6 +++--- .../f/FFTW/FFTW-3.3.3-cgmvapich2-1.1.12rc1.eb | 6 +++--- .../f/FFTW/FFTW-3.3.3-cgmvapich2-1.2.7.eb | 6 +++--- .../f/FFTW/FFTW-3.3.3-cgompi-1.1.7.eb | 6 +++--- .../f/FFTW/FFTW-3.3.3-gmpich2-1.4.8.eb | 6 +++--- .../f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb | 6 +++--- .../f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb | 6 +++--- .../f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb | 6 +++--- .../f/FFTW/FFTW-3.3.3-gompi-1.4.10-no-OFED.eb | 6 +++--- .../f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb | 6 +++--- .../f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb | 6 +++--- .../f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb | 6 +++--- .../f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb | 6 +++--- .../f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb | 6 +++--- .../f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb | 12 +++++++++-- .../f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb | 5 ++--- .../f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb | 12 +++++++++-- .../f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb | 20 +++++++++++++++---- .../f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb | 12 +++++++++-- .../f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb | 5 ++--- .../f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb | 5 ++--- .../f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb | 5 ++--- .../f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb | 5 ++--- .../f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb | 12 +++++++++-- .../f/FFTW/FFTW-3.3.4-gompi-1.5.14-no-OFED.eb | 6 +++--- .../f/FFTW/FFTW-3.3.4-gompi-1.5.14.eb | 6 +++--- .../f/FFTW/FFTW-3.3.4-gompi-2014b.eb | 6 +++--- 31 files changed, 127 insertions(+), 90 deletions(-) diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb index ec8397b735..7b985b5cf9 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +24,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb index 75ad8f64fd..a588916db1 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" # No quad precision, requires GCC v4.6 or higher. configopts = [ @@ -24,8 +24,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb index a882b723f5..e0070f8c02 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" # no quad precision, requires GCC v4.6 or higher configopts = [ @@ -24,8 +24,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb index b2c5ddce15..a823ad740d 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +24,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmpich-1.1.6.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmpich-1.1.6.eb index d7fffd3436..80feba4a1c 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmpich-1.1.6.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmpich-1.1.6.eb @@ -11,8 +11,8 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -# Put --enable-openmp back when Clang supports OpenMP. -common_configopts = "--with-pic" +# put --enable-openmp back when Clang supports OpenMP. +common_configopts = "--enable-threads --with-pic" # No quad precision, Clang 3.2 does not support it. configopts = [ @@ -25,7 +25,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', 'f', 'f_mpi', 'l', 'l_mpi']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.1.12rc1.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.1.12rc1.eb index 2806b10caa..40d1e0e87e 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.1.12rc1.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.1.12rc1.eb @@ -11,8 +11,8 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -# Put --enable-openmp back when Clang supports OpenMP. -common_configopts = "--with-pic" +# put --enable-openmp back when Clang supports OpenMP. +common_configopts = "--enable-threads --with-pic" # No quad precision, Clang 3.2 does not support it. configopts = [ @@ -25,7 +25,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', 'f', 'f_mpi', 'l', 'l_mpi']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.2.7.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.2.7.eb index df9fe7a076..4e7f8d5286 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.2.7.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.2.7.eb @@ -11,8 +11,8 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -# Put --enable-openmp back when Clang supports OpenMP. -common_configopts = "--with-pic" +# put --enable-openmp back when Clang supports OpenMP. +common_configopts = "--enable-threads --with-pic" # No quad precision, Clang 3.2 does not support it. configopts = [ @@ -25,7 +25,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', 'f', 'f_mpi', 'l', 'l_mpi']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgompi-1.1.7.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgompi-1.1.7.eb index 5697f5c11c..cad06b372f 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgompi-1.1.7.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgompi-1.1.7.eb @@ -11,8 +11,8 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -# Put --enable-openmp back when Clang supports OpenMP. -common_configopts = "--with-pic" +# put --enable-openmp back when Clang supports OpenMP. +common_configopts = "--enable-threads --with-pic" # No quad precision, Clang 3.2 does not support it. configopts = [ @@ -25,7 +25,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', 'f', 'f_mpi', 'l', 'l_mpi']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich2-1.4.8.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich2-1.4.8.eb index 260a090f9c..3887cfc26f 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich2-1.4.8.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich2-1.4.8.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +24,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb index 5f70b49f30..2b2e62c38f 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +24,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb index 039d1e12b3..51754660fb 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -25,8 +25,8 @@ sanity_check_paths = { 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb index 24f84008f2..25b0ad48d7 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -25,8 +25,8 @@ sanity_check_paths = { 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10-no-OFED.eb index 7e4ef9ffc4..b1f34e1fb3 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10-no-OFED.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10-no-OFED.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +24,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb index 06b0c2e2e1..014736bf74 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +24,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb index 8d3ca7d8c5..2dbe4a6ca9 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +24,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb index 1d53f20f3a..a6942002d0 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +24,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb index b1f5824155..d65c099fd1 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +24,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb index e3193217ca..415c5c1a3c 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +24,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb index 6e63456a82..eaa310e805 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb @@ -13,9 +13,17 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] ## single precision -configopts = ' --enable-sse --enable-single' +configopts = "--enable-sse --enable-single" # the MPI opts from FFTW2 are valid options but unused until FFTW3.3 -configopts += " --enable-openmp --with-pic --enable-mpi" +configopts += " --enable-threads --enable-openmp --with-pic --enable-mpi" + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom-to-conf', 'f-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3f%s.a' % x for x in ['', '_mpi', '_omp', '_threads']], + 'dirs': ['lib/pkgconfig'], +} moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb index 24c1373e5b..8a28925864 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" # No quad precision, requires GCC v4.6 or higher. configopts = [ @@ -24,8 +24,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb index 767ab63f0e..5637df1070 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb @@ -13,9 +13,17 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] ## single precision -configopts = ' --enable-sse --enable-single' +configopts = "--enable-sse --enable-single" # the MPI opts from FFTW2 are valid options but unused until FFTW3.3 -configopts += " --with-openmp --with-pic --enable-mpi" +configopts += " --enable-threads --enable-openmp --with-pic --enable-mpi" + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom-to-conf', 'f-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3f%s.a' % x for x in ['', '_mpi', '_omp', '_threads']], + 'dirs': ['lib/pkgconfig'], +} moduleclass = 'lib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb index 0a22b7c289..ea6c5f19b9 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb @@ -11,9 +11,21 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -configopts = "--enable-sse2" +common_configopts = "--enable-threads --enable-openmp --with-pic" -# the MPI opts from FFTW2 are valid options but unused until FFTW3.3 -configopts += " --with-openmp --with-pic --enable-mpi" +# no quad precision, requires GCC v4.6 or higher +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] -moduleclass = 'lib' +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb index 443ecd1135..36ae3de572 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb @@ -13,9 +13,17 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] ## single precision -configopts = ' --enable-sse --enable-single' +configopts = "--enable-sse --enable-single" # the MPI opts from FFTW2 are valid options but unused until FFTW3.3 -configopts += " --enable-openmp --with-pic --enable-mpi" +configopts += " --enable-threads --enable-openmp --with-pic --enable-mpi" + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom-to-conf', 'f-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3f%s.a' % x for x in ['', '_mpi', '_omp', '_threads']], + 'dirs': ['lib/pkgconfig'], +} moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb index 31042109a4..d06528f427 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" # no quad precision, requires GCC v4.6 or higher configopts = [ @@ -24,8 +24,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb index 0ae947ce7f..22563f4fff 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" # no quad precision, requires GCC v4.6 or higher configopts = [ @@ -24,8 +24,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb index c738f3c6ce..256799df7c 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb @@ -14,7 +14,7 @@ source_urls = [homepage] # FFTW guesses OpenMP flag for Intel C compiler (v11.1.075) wrong, so correct it. preconfigopts = "OPENMP_CFLAGS='-openmp' " -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" # No quad precision, requires GCC v4.6 or higher. configopts = [ @@ -27,8 +27,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb index 0d7133c107..3749f25743 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" # No quad precision, requires GCC v4.6 or higher. configopts = [ @@ -24,8 +24,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb index dc155cb0b8..c48e36b7f3 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb @@ -13,11 +13,19 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] ## single precision -configopts = ' --enable-sse --enable-single' +configopts = "--enable-sse --enable-single" # the MPI opts from FFTW2 are valid options but unused until FFTW3.3 -configopts += " --enable-openmp --with-pic --enable-mpi" +configopts += " --enable-threads --enable-openmp --with-pic --enable-mpi" preconfigopts = 'OMPI_MPICC=icc ' +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom-to-conf', 'f-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3f%s.a' % x for x in ['', '_mpi', '_omp', '_threads']], + 'dirs': ['lib/pkgconfig'], +} + moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14-no-OFED.eb index 6c4efd7f74..8b42075650 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14-no-OFED.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14-no-OFED.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +24,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14.eb index 1cf9159796..a347bb868e 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +24,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb index 9715a9eee0..558d7de0dd 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +24,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } -- GitLab From 47568af2d75bb9996494f52a1d6b89a4b8652042 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 7 Aug 2014 15:19:53 +0200 Subject: [PATCH 0036/1217] clarify comment w.r.t. no quad precision in Intel-based FFTW builds --- easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb index 1c18726997..80854df93d 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb @@ -14,6 +14,7 @@ source_urls = [homepage] common_configopts = "--enable-threads --enable-openmp --with-pic" # no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", common_configopts + " --enable-long-double --enable-mpi", @@ -24,8 +25,7 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } -- GitLab From 7f7cb51f762812da83aece9e40da8a0c29e98770 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 7 Aug 2014 15:21:50 +0200 Subject: [PATCH 0037/1217] clarify comment w.r.t. no quad precision in Intel-based FFTW builds --- easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb | 3 ++- easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb | 1 + easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb | 3 ++- easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb | 1 + easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb | 1 + easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb | 1 + easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb | 3 ++- easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb | 3 ++- 8 files changed, 12 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb index a588916db1..42cb2a8d06 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb @@ -13,7 +13,8 @@ source_urls = [homepage] common_configopts = "--enable-threads --enable-openmp --with-pic" -# No quad precision, requires GCC v4.6 or higher. +# no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", common_configopts + " --enable-long-double --enable-mpi", diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb index e0070f8c02..d992f26518 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb @@ -14,6 +14,7 @@ source_urls = [homepage] common_configopts = "--enable-threads --enable-openmp --with-pic" # no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", common_configopts + " --enable-long-double --enable-mpi", diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb index 8a28925864..241f6b5c41 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb @@ -13,7 +13,8 @@ source_urls = [homepage] common_configopts = "--enable-threads --enable-openmp --with-pic" -# No quad precision, requires GCC v4.6 or higher. +# no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", common_configopts + " --enable-long-double --enable-mpi", diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb index ea6c5f19b9..156f91bcc7 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb @@ -14,6 +14,7 @@ source_urls = [homepage] common_configopts = "--enable-threads --enable-openmp --with-pic" # no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", common_configopts + " --enable-long-double --enable-mpi", diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb index d06528f427..72cfe6d029 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb @@ -14,6 +14,7 @@ source_urls = [homepage] common_configopts = "--enable-threads --enable-openmp --with-pic" # no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", common_configopts + " --enable-long-double --enable-mpi", diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb index 22563f4fff..6d02cfaf9d 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb @@ -14,6 +14,7 @@ source_urls = [homepage] common_configopts = "--enable-threads --enable-openmp --with-pic" # no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", common_configopts + " --enable-long-double --enable-mpi", diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb index 256799df7c..548d0e10cf 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb @@ -16,7 +16,8 @@ preconfigopts = "OPENMP_CFLAGS='-openmp' " common_configopts = "--enable-threads --enable-openmp --with-pic" -# No quad precision, requires GCC v4.6 or higher. +# no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", common_configopts + " --enable-long-double --enable-mpi", diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb index 3749f25743..1d0dd40a97 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb @@ -13,7 +13,8 @@ source_urls = [homepage] common_configopts = "--enable-threads --enable-openmp --with-pic" -# No quad precision, requires GCC v4.6 or higher. +# no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", common_configopts + " --enable-long-double --enable-mpi", -- GitLab From b338df3530c3a55d7dc7964aa490ff3a39c8e3b7 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Fri, 8 Aug 2014 12:47:54 +0200 Subject: [PATCH 0038/1217] added libX11 as dependency for Tk + fixed --enable-threads in FFTW gompi --- .../f/FFTW/FFTW-3.3.4-gompi-2014b.eb | 2 +- .../inputproto/inputproto-2.3-intel-2014b.eb | 16 +++++++++ .../k/kbproto/kbproto-1.0.6-intel-2014b.eb | 16 +++++++++ .../libX11-1.6.2-intel-2014b-Python-2.7.8.eb | 34 +++++++++++++++++++ .../l/libXau/libXau-1.0.8-intel-2014b.eb | 22 ++++++++++++ .../libpthread-stubs-0.3-intel-2014b.eb | 17 ++++++++++ .../libxcb-1.10-intel-2014b-Python-2.7.8.eb | 31 +++++++++++++++++ .../easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb | 5 ++- ...xcb-proto-1.10-intel-2014b-Python-2.7.8.eb | 24 +++++++++++++ .../xextproto/xextproto-7.3.0-intel-2014b.eb | 23 +++++++++++++ .../x/xtrans/xtrans-1.3.4-intel-2014b.eb | 23 +++++++++++++ 11 files changed, 211 insertions(+), 2 deletions(-) create mode 100644 easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2014b.eb create mode 100644 easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2014b.eb create mode 100644 easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb create mode 100644 easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb create mode 100644 easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb create mode 100644 easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb create mode 100644 easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb create mode 100644 easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb create mode 100644 easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb index 9715a9eee0..e9672d6498 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-openmp --with-pic --enable-threads" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2014b.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2014b.eb new file mode 100644 index 0000000000..0ba9fd0137 --- /dev/null +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2014b.eb @@ -0,0 +1,16 @@ +name = 'inputproto' +version = '2.3' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org InputProto protocol headers.""" +toolchain = {'name': 'intel', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'foss', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'goolf', 'version': '1.4.10'})) + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in ['XI2.h', 'XI.h', 'XIproto.h', 'XI2proto.h']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2014b.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2014b.eb new file mode 100644 index 0000000000..87b2e20283 --- /dev/null +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2014b.eb @@ -0,0 +1,16 @@ +name = 'kbproto' +version = '1.0.6' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org KBProto protocol headers.""" +toolchain = {'name': 'intel', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'foss', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'goolf', 'version': '1.4.10'})) + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in ['XKBgeom.h', 'XKB.h', 'XKBproto.h', 'XKBsrv.h', 'XKBstr.h']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000..ab23ae8800 --- /dev/null +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb @@ -0,0 +1,34 @@ +name = 'libX11' +version = '1.6.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" +toolchain = {'name': 'intel', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'foss', 'version': '2014b'}) + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +versionsuffix = '-Python-2.7.8' +builddependencies = [ + ('xextproto', '7.3.0'), + ('xcb-proto', '1.10', versionsuffix), + ('inputproto', '2.3'), + ('xproto', '7.0.26'), + ('kbproto', '1.0.6'), +] + +dependencies = [ + ('libxcb', '1.10', versionsuffix), + ('xtrans', '1.3.4'), +] + +sanity_check_paths = { + 'files': ['include/X11/%s' % x for x in [ + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb new file mode 100644 index 0000000000..e554cd7084 --- /dev/null +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb @@ -0,0 +1,22 @@ +name = 'libXau' +version = '1.0.8' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """The libXau package contains a library implementing the X11 Authorization Protocol. +This is useful for restricting client access to the display.""" +toolchain = {'name': 'intel', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'foss', 'version': '2014b'}) +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +dependencies = [ + ('xproto', '7.0.26'), +] + +sanity_check_paths = { + 'files': ['lib/%s' % x for x in ['libXau.a', 'libXau.so']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb new file mode 100644 index 0000000000..8159c829e9 --- /dev/null +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb @@ -0,0 +1,17 @@ +name = 'libpthread-stubs' +version = '0.3' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] +toolchain = {'name': 'intel', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'foss', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'goolf', 'version': '1.4.10'})) + +sanity_check_paths = { + 'files' : ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [] + } + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000..5957130600 --- /dev/null +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb @@ -0,0 +1,31 @@ +name = 'libxcb' +version = '1.10' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" +toolchain = {'name': 'intel', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'foss', 'version': '2014b'}) + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pyver = '2.7.8' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), + ('xcb-proto', '1.10', versionsuffix), + ('libXau', '1.0.8'), + ('libpthread-stubs', '0.3'), +] + +sanity_check_paths = { + 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", + "-randr", "-record", "-render", "-res", "-screensaver", + "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", + "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'dirs': ['include/xcb', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb index 77ea7e4226..00f3f3843c 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'intel', 'version': '2014b'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] -dependencies = [('Tcl', version)] +dependencies = [ + ('Tcl', version), + ('libX11', '1.6.2', '-Python-2.7.8'), +] configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib CFLAGS="-I$EBROOTTCL/include"' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000..776947eb93 --- /dev/null +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb @@ -0,0 +1,24 @@ +name = 'xcb-proto' +version = '1.10' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] +toolchain = {'name': 'intel', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'foss', 'version': '2014b'}) + +python = 'Python' +pyver = '2.7.8' +versionsuffix = '-%s-%s' % (python, pyver) +dependencies = [(python, pyver)] + +pyshortver = '.'.join(pyver.split('.')[0:2]) + +sanity_check_paths = { + 'files': ['lib/pkgconfig/xcb-proto.pc'], + 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb new file mode 100644 index 0000000000..f5a6067a18 --- /dev/null +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb @@ -0,0 +1,23 @@ +name = 'xextproto' +version = '7.3.0' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """XExtProto protocol headers.""" +toolchain = {'name': 'intel', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'foss', 'version': '2014b'}) +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] + ], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb new file mode 100644 index 0000000000..fb5bc9eeed --- /dev/null +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb @@ -0,0 +1,23 @@ +name = 'xtrans' +version = '1.3.4' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """xtrans includes a number of routines to make X implementations transport-independent; + at time of writing, it includes support for UNIX sockets, IPv4, IPv6, and DECnet. +""" +toolchain = {'name': 'intel', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'foss', 'version': '2014b'}) +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +sanity_check_paths = { + 'files' : ['include/X11/Xtrans/%s' % x for x in [ + 'transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', + 'Xtranssock.c', 'Xtransutil.c' + ] + ], + 'dirs' : [] +} + +moduleclass = 'devel' -- GitLab From dcf836ed57b1f28a062b35a2674296454c708fbc Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Fri, 8 Aug 2014 13:54:25 +0200 Subject: [PATCH 0039/1217] removed tweaked by EasyBuild lines --- .../l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb | 2 +- easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb | 2 +- .../l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb | 2 +- .../x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb | 2 +- .../easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb | 2 +- easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb index ab23ae8800..74cf24ada8 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb @@ -3,7 +3,7 @@ version = '1.6.2' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """X11 client-side library""" -toolchain = {'name': 'intel', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'foss', 'version': '2014b'}) +toolchain = {'name': 'intel', 'version': '2014b'} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb index e554cd7084..10128cf4f0 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb @@ -4,7 +4,7 @@ version = '1.0.8' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """The libXau package contains a library implementing the X11 Authorization Protocol. This is useful for restricting client access to the display.""" -toolchain = {'name': 'intel', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'foss', 'version': '2014b'}) +toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb index 5957130600..aece689ecb 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb @@ -4,7 +4,7 @@ version = '1.10' homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -toolchain = {'name': 'intel', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'foss', 'version': '2014b'}) +toolchain = {'name': 'intel', 'version': '2014b'} source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb index 776947eb93..172dd2fb86 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb @@ -7,7 +7,7 @@ latency hiding, direct access to the protocol, improved threading support, and e source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] -toolchain = {'name': 'intel', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'foss', 'version': '2014b'}) +toolchain = {'name': 'intel', 'version': '2014b'} python = 'Python' pyver = '2.7.8' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb index f5a6067a18..ef12a43ad4 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb @@ -3,7 +3,7 @@ version = '7.3.0' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """XExtProto protocol headers.""" -toolchain = {'name': 'intel', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'foss', 'version': '2014b'}) +toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb index fb5bc9eeed..985e8f0131 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb @@ -5,7 +5,7 @@ homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """xtrans includes a number of routines to make X implementations transport-independent; at time of writing, it includes support for UNIX sockets, IPv4, IPv6, and DECnet. """ -toolchain = {'name': 'intel', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'foss', 'version': '2014b'}) +toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] -- GitLab From 2dee3e9b66315e6dd3f47a181bc9f0e3adcbd7cd Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 12 Aug 2014 11:57:21 +0200 Subject: [PATCH 0040/1217] make sure the relion gui is installed, it can create and submit job scripts on the login nodes --- .../r/RELION/RELION-1.3-foss-2014b.eb | 34 +++++++++++++++++++ .../r/RELION/RELION-1.3-intel-2014b.eb | 12 +++++++ easybuild/easyconfigs/r/RELION/fltk.patch | 11 ++++++ 3 files changed, 57 insertions(+) create mode 100644 easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb create mode 100644 easybuild/easyconfigs/r/RELION/fltk.patch diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb new file mode 100644 index 0000000000..24ca1b8807 --- /dev/null +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb @@ -0,0 +1,34 @@ +name = 'RELION' +version = '1.3' + +homepage = 'http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page' +description = """RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer + program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class + averages in electron cryo-microscopy (cryo-EM).""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www2.mrc-lmb.cam.ac.uk/groups/scheres/18jun14'] +sources = [SOURCELOWER_TAR_BZ2] + +dependencies = [ + ('FLTK', '1.3.2'), + ('zlib', '1.2.8'), + ('binutils', '2.24'), + ('libX11', '1.6.2', '-Python-2.7.8'), +] + +patches = ['fltk.patch'] + +# RELION expects FLTK to be in external/fltk-1.3.0 +configopts = ['--enable-mpi --enable-openmp && ln -s $EBROOTFLTK/include external/fltk-1.3.0'] +makeopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11" ' +installopts = " && cp %(installdir)s/bin/relion_maingui %(installdir)s/bin/relion " + +sanity_check_paths = { + 'files': ['bin/relion'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb index 1753fd2512..8bd6021d61 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb @@ -14,8 +14,20 @@ sources = [SOURCELOWER_TAR_BZ2] dependencies = [ ('FFTW', '3.3.4'), ('FLTK', '1.3.2'), + ('zlib', '1.2.8'), + ('binutils', '2.24'), + ('libX11', '1.6.2', '-Python-2.7.8'), ] +patches = ['fltk.patch'] + configopts = ['--enable-mpi'] +# RELION expects FLTK to be in external/fltk-1.3.0 +configopts = ['--enable-mpi --enable-openmp && ln -s $EBROOTFLTK/include external/fltk-1.3.0'] +makeopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11" ' +# users expect the maingui binary to be called relion +installopts = " && cp %(installdir)s/bin/relion_maingui %(installdir)s/bin/relion " + + moduleclass = 'bio' diff --git a/easybuild/easyconfigs/r/RELION/fltk.patch b/easybuild/easyconfigs/r/RELION/fltk.patch new file mode 100644 index 0000000000..3d8ab1cc58 --- /dev/null +++ b/easybuild/easyconfigs/r/RELION/fltk.patch @@ -0,0 +1,11 @@ +--- configure.orig 2014-08-11 17:18:31.686813247 +0200 ++++ configure 2014-08-11 17:18:39.390957858 +0200 +@@ -15665,7 +15665,7 @@ + #Check for FLTK + # as g++ seems needed and not gcc for compilation, + #just check for presence of fltk-config program +-fltkfile=`pwd`/bin/fltk-config ++fltkfile=`which fltk-config` + as_ac_File=`$as_echo "ac_cv_file_$fltkfile" | $as_tr_sh` + { $as_echo "$as_me:$LINENO: checking for $fltkfile" >&5 + $as_echo_n "checking for $fltkfile... " >&6; } -- GitLab From 67096eb84a6dab085dc3b87017b9a76994135e9d Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 12 Aug 2014 13:21:41 +0200 Subject: [PATCH 0041/1217] added binutils --- .../b/binutils/binutils-2.24-foss-2014b.eb | 23 +++++++++++++++++++ .../b/binutils/binutils-2.24-intel-2014b.eb | 23 +++++++++++++++++++ 2 files changed, 46 insertions(+) create mode 100644 easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb create mode 100644 easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb b/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb new file mode 100644 index 0000000000..7ef30b2145 --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb @@ -0,0 +1,23 @@ +name = 'binutils' +version = '2.24' + +homepage = 'http://directory.fsf.org/project/binutils/' +description = "binutils-2.22: GNU binary utilities" + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +toolchain = {'name': 'foss', 'version': '2014b'} + +dependencies = [ + ('zlib', '1.2.8'), +] +binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a'] + + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb b/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb new file mode 100644 index 0000000000..de386edb2a --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb @@ -0,0 +1,23 @@ +name = 'binutils' +version = '2.24' + +homepage = 'http://directory.fsf.org/project/binutils/' +description = "binutils-2.22: GNU binary utilities" + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +toolchain = {'name': 'intel', 'version': '2014b'} + +dependencies = [ + ('zlib', '1.2.8'), +] +binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a'] + + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], + 'dirs': [], +} + +moduleclass = 'tools' -- GitLab From f0b1cea52f9ad34456ab6cd74cb4db5d96db82b3 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 12 Aug 2014 13:44:05 +0200 Subject: [PATCH 0042/1217] added fltk foss version + removed unneeded zlib and binutils --- .../f/FLTK/FLTK-1.3.2-foss-2014b.eb | 27 +++++++++++++++++++ .../r/RELION/RELION-1.3-foss-2014b.eb | 2 -- .../r/RELION/RELION-1.3-intel-2014b.eb | 2 -- 3 files changed, 27 insertions(+), 4 deletions(-) create mode 100644 easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb diff --git a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb new file mode 100644 index 0000000000..3f10ddb0c9 --- /dev/null +++ b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb @@ -0,0 +1,27 @@ +# +# author: Dina Mahmoud Ibrahim ( Cairo University ) +# +name = 'FLTK' +version = '1.3.2' + +homepage = 'http://www.fltk.org' +description = """FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, + and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL + and its built-in GLUT emulation.""" +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = ['%(namelower)s-%(version)s-source.tar.gz'] +source_urls = ['http://fltk.org/pub/%(namelower)s/%(version)s/'] + +dependencies = [ + ('Tcl', '8.5.12'), + ('Tk', '8.5.12'), +] + +sanity_check_paths = { + 'files': ['bin/fltk-config','bin/fluid'], + 'dirs': ['lib'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb index 24ca1b8807..3d70152a22 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb @@ -14,8 +14,6 @@ sources = [SOURCELOWER_TAR_BZ2] dependencies = [ ('FLTK', '1.3.2'), - ('zlib', '1.2.8'), - ('binutils', '2.24'), ('libX11', '1.6.2', '-Python-2.7.8'), ] diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb index 8bd6021d61..e5b6caa589 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb @@ -14,8 +14,6 @@ sources = [SOURCELOWER_TAR_BZ2] dependencies = [ ('FFTW', '3.3.4'), ('FLTK', '1.3.2'), - ('zlib', '1.2.8'), - ('binutils', '2.24'), ('libX11', '1.6.2', '-Python-2.7.8'), ] -- GitLab From cfdc9a314427067abec07ed399f4233f8d386aea Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 12 Aug 2014 13:50:35 +0200 Subject: [PATCH 0043/1217] added more foss dependencies --- .../libX11-1.6.2-foss-2014b-Python-2.7.8.eb | 35 +++++++++++++++++++ .../t/Tcl/Tcl-8.5.12-foss-2014b.eb | 18 ++++++++++ .../easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb | 24 +++++++++++++ .../x/xproto/xproto-7.0.26-foss-2014b.eb | 22 ++++++++++++ .../z/zlib/zlib-1.2.8-foss-2014b.eb | 21 +++++++++++ 5 files changed, 120 insertions(+) create mode 100644 easybuild/easyconfigs/l/libX11/libX11-1.6.2-foss-2014b-Python-2.7.8.eb create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb create mode 100644 easybuild/easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb create mode 100644 easybuild/easyconfigs/x/xproto/xproto-7.0.26-foss-2014b.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-foss-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000..3018314f3d --- /dev/null +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-foss-2014b-Python-2.7.8.eb @@ -0,0 +1,35 @@ +name = 'libX11' +version = '1.6.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +versionsuffix = '-Python-2.7.8' +builddependencies = [ + ('xextproto', '7.3.0'), + ('xcb-proto', '1.10', versionsuffix), + ('kbproto', '1.0.6'), + ('inputproto', '2.3'), + ('xproto', '7.0.26'), +] + +dependencies = [ + ('libxcb', '1.10', versionsuffix), + ('xtrans', '1.2.6'), +] + +sanity_check_paths = { + 'files': ['include/X11/%s' % x for x in [ + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb new file mode 100644 index 0000000000..0ce3fc7643 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb @@ -0,0 +1,18 @@ +name = 'Tcl' +version = '8.5.12' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, + suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" +toolchain = {'name': 'foss', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'intel', 'version': '2014b'}) + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb new file mode 100644 index 0000000000..a48ecee8fa --- /dev/null +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb @@ -0,0 +1,24 @@ +name = 'Tk' +version = '8.5.12' + +homepage = 'http://www.tcl.tk/' +description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building + a graphical user interface (GUI) in many different programming languages.""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + + + +dependencies = [ + ('Tcl', version), + ('libX11', '1.6.2', '-Python-2.7.8'), +] + +configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib CFLAGS="-I$EBROOTTCL/include"' + +start_dir = 'unix' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-foss-2014b.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-foss-2014b.eb new file mode 100644 index 0000000000..b8ed0a3dda --- /dev/null +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-foss-2014b.eb @@ -0,0 +1,22 @@ +name = 'xproto' +version = '7.0.26' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "X protocol and ancillary headers" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs' : [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb new file mode 100644 index 0000000000..96953e268d --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb @@ -0,0 +1,21 @@ +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" +toolchain = {'name': 'foss', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'goolf', 'version': '1.4.10'}) +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 68585f59702d6b71d6af7ac4bcba0df947f756d7 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 12 Aug 2014 14:05:22 +0200 Subject: [PATCH 0044/1217] added more dependencies for X --- .../i/inputproto/inputproto-2.3-foss-2014b.eb | 16 +++++++++ .../k/kbproto/kbproto-1.0.6-foss-2014b.eb | 16 +++++++++ .../libxcb-1.10-foss-2014b-Python-2.7.8.eb | 34 +++++++++++++++++++ .../xcb-proto-1.10-foss-2014b-Python-2.7.8.eb | 25 ++++++++++++++ .../x/xextproto/xextproto-7.3.0-foss-2014b.eb | 24 +++++++++++++ .../x/xproto/xproto-7.0.26-intel-2014b.eb | 22 ++++++++++++ .../x/xtrans/xtrans-1.2.6-foss-2014b.eb | 24 +++++++++++++ 7 files changed, 161 insertions(+) create mode 100644 easybuild/easyconfigs/i/inputproto/inputproto-2.3-foss-2014b.eb create mode 100644 easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-foss-2014b.eb create mode 100644 easybuild/easyconfigs/l/libxcb/libxcb-1.10-foss-2014b-Python-2.7.8.eb create mode 100644 easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-foss-2014b-Python-2.7.8.eb create mode 100644 easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb create mode 100644 easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2014b.eb create mode 100644 easybuild/easyconfigs/x/xtrans/xtrans-1.2.6-foss-2014b.eb diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-foss-2014b.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-foss-2014b.eb new file mode 100644 index 0000000000..3281581171 --- /dev/null +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-foss-2014b.eb @@ -0,0 +1,16 @@ +name = 'inputproto' +version = '2.3' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org InputProto protocol headers.""" +toolchain = {'name': 'foss', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'goolf', 'version': '1.4.10'}) + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in ['XI2.h', 'XI.h', 'XIproto.h', 'XI2proto.h']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-foss-2014b.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-foss-2014b.eb new file mode 100644 index 0000000000..fffe3fa604 --- /dev/null +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-foss-2014b.eb @@ -0,0 +1,16 @@ +name = 'kbproto' +version = '1.0.6' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org KBProto protocol headers.""" +toolchain = {'name': 'foss', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'goolf', 'version': '1.4.10'}) + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in ['XKBgeom.h', 'XKB.h', 'XKBproto.h', 'XKBsrv.h', 'XKBstr.h']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.10-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-foss-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000..e021ca6d64 --- /dev/null +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-foss-2014b-Python-2.7.8.eb @@ -0,0 +1,34 @@ +name = 'libxcb' +version = '1.10' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pyver = '2.7.8' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), + ('xcb-proto', '1.10', versionsuffix), + ('libXau', '1.0.8'), + ('libpthread-stubs', '0.3'), +] + +#preconfigopts = "rm -r aclocal.m4 configure Makefile.in ltmain.sh && ./autogen.sh && " + +sanity_check_paths = { + 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", + "-randr", "-record", "-render", "-res", "-screensaver", + "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", + "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'dirs': ['include/xcb', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-foss-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000..735384e381 --- /dev/null +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-foss-2014b-Python-2.7.8.eb @@ -0,0 +1,25 @@ +name = 'xcb-proto' +version = '1.10' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'foss', 'version': '2014b'} + +python = 'Python' +pyver = '2.7.8' +versionsuffix = '-%s-%s' % (python, pyver) +dependencies = [(python, pyver)] + +pyshortver = '.'.join(pyver.split('.')[0:2]) + +sanity_check_paths = { + 'files': ['lib/pkgconfig/xcb-proto.pc'], + 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb new file mode 100644 index 0000000000..627563a2d2 --- /dev/null +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb @@ -0,0 +1,24 @@ +name = 'xextproto' +version = '7.3.0' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """XExtProto protocol headers.""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] + ], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2014b.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2014b.eb new file mode 100644 index 0000000000..61f6320ae1 --- /dev/null +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2014b.eb @@ -0,0 +1,22 @@ +name = 'xproto' +version = '7.0.26' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "X protocol and ancillary headers" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs' : [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.2.6-foss-2014b.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.2.6-foss-2014b.eb new file mode 100644 index 0000000000..d1976bfe2e --- /dev/null +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.2.6-foss-2014b.eb @@ -0,0 +1,24 @@ +name = 'xtrans' +version = '1.2.6' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """xtrans includes a number of routines to make X implementations transport-independent; + at time of writing, it includes support for UNIX sockets, IPv4, IPv6, and DECnet. +""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +sanity_check_paths = { + 'files' : ['include/X11/Xtrans/%s' % x for x in [ + 'transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', + 'Xtranssock.c', 'Xtranstli.c', 'Xtransutil.c' + ] + ], + 'dirs' : [] +} + +moduleclass = 'devel' -- GitLab From 799ee3d66156e94444970cd5b00bbf814b89199f Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 12 Aug 2014 14:09:02 +0200 Subject: [PATCH 0045/1217] build FLTK with -fPIC --- easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb index c374191d19..989680463f 100644 --- a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb +++ b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb @@ -10,6 +10,7 @@ description = """FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), and its built-in GLUT emulation.""" toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} sources = ['%(namelower)s-%(version)s-source.tar.gz'] source_urls = ['http://fltk.org/pub/%(namelower)s/%(version)s/'] -- GitLab From 7b69f18e25c57604b69ae548dae28a3018275352 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 12 Aug 2014 14:11:03 +0200 Subject: [PATCH 0046/1217] added more dependencies --- .../l/libXau/libXau-1.0.8-foss-2014b.eb | 23 +++++ .../libpthread-stubs-0.3-foss-2014b.eb | 17 ++++ .../p/Python/Python-2.7.8-foss-2014b.eb | 88 +++++++++++++++++++ 3 files changed, 128 insertions(+) create mode 100644 easybuild/easyconfigs/l/libXau/libXau-1.0.8-foss-2014b.eb create mode 100644 easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-foss-2014b.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-foss-2014b.eb new file mode 100644 index 0000000000..3443dffebd --- /dev/null +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-foss-2014b.eb @@ -0,0 +1,23 @@ +name = 'libXau' +version = '1.0.8' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """The libXau package contains a library implementing the X11 Authorization Protocol. +This is useful for restricting client access to the display.""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +dependencies = [ + ('xproto', '7.0.26'), +] + +sanity_check_paths = { + 'files': ['lib/%s' % x for x in ['libXau.a', 'libXau.so']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb new file mode 100644 index 0000000000..42d6158ae8 --- /dev/null +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb @@ -0,0 +1,17 @@ +name = 'libpthread-stubs' +version = '0.3' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] +toolchain = {'name': 'foss', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'goolf', 'version': '1.4.10'}) + +sanity_check_paths = { + 'files' : ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [] + } + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb new file mode 100644 index 0000000000..d60dad6e70 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb @@ -0,0 +1,88 @@ +name = 'Python' +version = '2.7.8' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.6.1' +scipyversion = '0.10.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons +] + +# order is important! +exts_list = [ + ('setuptools', '0.6c11', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '1.1', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.1.2', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-%s_distutils_multiple-lib-dirs.patch' % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('mpi4py', '1.3', { + 'source_urls': ['https://mpi4py.googlecode.com/files/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.9.1', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.17.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('dateutil', '2.1', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '0.9.1', { + 'source_urls': ['https://deap.googlecode.com/files/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '1.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('paramiko', '1.12.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pygments', '1.6', { + 'source_urls': ['https://pypi.python.org/packages/source/P/Pygments/'], + 'source_tmpl': 'Pygments-%(version)s.tar.gz', + }), +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +moduleclass = 'lang' -- GitLab From d045c412ae6b9719b00646e5afb6d7df9c8aad84 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 12 Aug 2014 15:30:58 +0200 Subject: [PATCH 0047/1217] added fontconfig as a dependency to RELION --- .../e/expat/expat-2.1.0-foss-2014b.eb | 13 ++++++++++++ .../e/expat/expat-2.1.0-intel-2014b.eb | 13 ++++++++++++ .../fontconfig-2.11.1-foss-2014b.eb | 18 ++++++++++++++++ .../fontconfig-2.11.1-intel-2014b.eb | 18 ++++++++++++++++ .../f/freetype/freetype-2.5.3-foss-2014b.eb | 21 +++++++++++++++++++ .../f/freetype/freetype-2.5.3-intel-2014b.eb | 21 +++++++++++++++++++ .../l/libpng/libpng-1.6.12-foss-2014b.eb | 17 +++++++++++++++ .../l/libpng/libpng-1.6.12-intel-2014b.eb | 17 +++++++++++++++ .../r/RELION/RELION-1.3-foss-2014b.eb | 1 + .../r/RELION/RELION-1.3-intel-2014b.eb | 1 + 10 files changed, 140 insertions(+) create mode 100644 easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2014b.eb create mode 100644 easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb create mode 100644 easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-foss-2014b.eb create mode 100644 easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb create mode 100644 easybuild/easyconfigs/f/freetype/freetype-2.5.3-foss-2014b.eb create mode 100644 easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb create mode 100644 easybuild/easyconfigs/l/libpng/libpng-1.6.12-foss-2014b.eb create mode 100644 easybuild/easyconfigs/l/libpng/libpng-1.6.12-intel-2014b.eb diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2014b.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2014b.eb new file mode 100644 index 0000000000..afa69e8f7e --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2014b.eb @@ -0,0 +1,13 @@ +name = 'expat' +version = '2.1.0' + +homepage = 'http://expat.sourceforge.net/' +description = """Expat is an XML parser library written in C. It is a stream-oriented parser in which an application +registers handlers for things the parser might find in the XML document (like start tags)""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb new file mode 100644 index 0000000000..fee1afb9ea --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb @@ -0,0 +1,13 @@ +name = 'expat' +version = '2.1.0' + +homepage = 'http://expat.sourceforge.net/' +description = """Expat is an XML parser library written in C. It is a stream-oriented parser in which an application +registers handlers for things the parser might find in the XML document (like start tags)""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-foss-2014b.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-foss-2014b.eb new file mode 100644 index 0000000000..1e3ea79b2a --- /dev/null +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-foss-2014b.eb @@ -0,0 +1,18 @@ +name = "fontconfig" +version = '2.11.1' + +homepage = 'http://www.freedesktop.org/software/fontconfig' +description = """Fontconfig is a library designed to provide system-wide font configuration, customization and +application access.""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +source_urls = ['http://www.freedesktop.org/software/fontconfig/release/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('expat', '2.1.0'), + ('freetype','2.5.3'), +] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb new file mode 100644 index 0000000000..9b129da076 --- /dev/null +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb @@ -0,0 +1,18 @@ +name = "fontconfig" +version = '2.11.1' + +homepage = 'http://www.freedesktop.org/software/fontconfig' +description = """Fontconfig is a library designed to provide system-wide font configuration, customization and +application access.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://www.freedesktop.org/software/fontconfig/release/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('expat', '2.1.0'), + ('freetype','2.5.3'), +] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-foss-2014b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-foss-2014b.eb new file mode 100644 index 0000000000..c6397df9cf --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-foss-2014b.eb @@ -0,0 +1,21 @@ +name = 'freetype' +version = '2.5.3' + +homepage = 'http://freetype.org' +description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and + portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display + servers, font conversion tools, text image generation tools, and many other products as well.""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('libpng', '1.6.12')] + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb new file mode 100644 index 0000000000..c0d1a23ea9 --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb @@ -0,0 +1,21 @@ +name = 'freetype' +version = '2.5.3' + +homepage = 'http://freetype.org' +description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and + portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display + servers, font conversion tools, text image generation tools, and many other products as well.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('libpng', '1.6.12')] + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-foss-2014b.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-foss-2014b.eb new file mode 100644 index 0000000000..3487259a8e --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-foss-2014b.eb @@ -0,0 +1,17 @@ +name = 'libpng' +version = '1.6.12' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-intel-2014b.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-intel-2014b.eb new file mode 100644 index 0000000000..452a42cbb4 --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-intel-2014b.eb @@ -0,0 +1,17 @@ +name = 'libpng' +version = '1.6.12' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb index 3d70152a22..ff4cf4df66 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb @@ -15,6 +15,7 @@ sources = [SOURCELOWER_TAR_BZ2] dependencies = [ ('FLTK', '1.3.2'), ('libX11', '1.6.2', '-Python-2.7.8'), + ('fontconfig', '2.11.1'), ] patches = ['fltk.patch'] diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb index e5b6caa589..aca1ceb4db 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb @@ -15,6 +15,7 @@ dependencies = [ ('FFTW', '3.3.4'), ('FLTK', '1.3.2'), ('libX11', '1.6.2', '-Python-2.7.8'), + ('fontconfig', '2.11.1'), ] patches = ['fltk.patch'] -- GitLab From 7bd9d02a28a66351d12fb57b76fd73c513d3f691 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 12 Aug 2014 15:34:11 +0200 Subject: [PATCH 0048/1217] added more dependencies for RELION --- .../b/bzip2/bzip2-1.0.6-foss-2014b.eb | 14 +++++++++++ .../libreadline/libreadline-6.3-foss-2014b.eb | 24 +++++++++++++++++++ .../n/ncurses/ncurses-5.9-foss-2014b.eb | 14 +++++++++++ 3 files changed, 52 insertions(+) create mode 100644 easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2014b.eb create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2014b.eb create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2014b.eb diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2014b.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2014b.eb new file mode 100644 index 0000000000..8c9cd14263 --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2014b.eb @@ -0,0 +1,14 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically +compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical +compressors), whilst being around twice as fast at compression and six times faster at decompression.""" +toolchain = {'name': 'foss', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'goolf', 'version': '1.5.14'}) +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s/'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2014b.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2014b.eb new file mode 100644 index 0000000000..5ae7433e62 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2014b.eb @@ -0,0 +1,24 @@ +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2014b.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2014b.eb new file mode 100644 index 0000000000..cdebdeb972 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2014b.eb @@ -0,0 +1,14 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" +toolchain = {'name': 'foss', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'GCC', 'version': '4.8.2'}) +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' -- GitLab From 63c828ff1ffca209b61075e332c9d5822efe1518 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 12 Aug 2014 16:04:15 +0200 Subject: [PATCH 0049/1217] added xft as dependency for RELION --- .../l/libXft/libXft-2.3.2-foss-2014b.eb | 29 +++++++++++++++++++ .../l/libXft/libXft-2.3.2-intel-2014b.eb | 29 +++++++++++++++++++ .../libXrender/libXrender-0.9.8-foss-2014b.eb | 26 +++++++++++++++++ .../libXrender-0.9.8-intel-2014b.eb | 26 +++++++++++++++++ .../r/RELION/RELION-1.3-foss-2014b.eb | 3 +- .../r/RELION/RELION-1.3-intel-2014b.eb | 7 ++--- .../renderproto-0.11-foss-2014b.eb | 18 ++++++++++++ .../renderproto-0.11-intel-2014b.eb | 18 ++++++++++++ 8 files changed, 151 insertions(+), 5 deletions(-) create mode 100644 easybuild/easyconfigs/l/libXft/libXft-2.3.2-foss-2014b.eb create mode 100644 easybuild/easyconfigs/l/libXft/libXft-2.3.2-intel-2014b.eb create mode 100644 easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-foss-2014b.eb create mode 100644 easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-intel-2014b.eb create mode 100644 easybuild/easyconfigs/r/renderproto/renderproto-0.11-foss-2014b.eb create mode 100644 easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2014b.eb diff --git a/easybuild/easyconfigs/l/libXft/libXft-2.3.2-foss-2014b.eb b/easybuild/easyconfigs/l/libXft/libXft-2.3.2-foss-2014b.eb new file mode 100644 index 0000000000..1ef27863e8 --- /dev/null +++ b/easybuild/easyconfigs/l/libXft/libXft-2.3.2-foss-2014b.eb @@ -0,0 +1,29 @@ +name = 'libXft' +version = '2.3.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('kbproto', '1.0.6'), + ('renderproto', '0.11'), +] + +dependencies = [ + ('libX11', '1.6.2', '-Python-2.7.8'), + ('libXrender', '0.9.8'), + ('freetype', '2.5.3'), + ('fontconfig', '2.11.1'), +] + +sanity_check_paths = { + 'files': ['lib/libXft.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXft/libXft-2.3.2-intel-2014b.eb b/easybuild/easyconfigs/l/libXft/libXft-2.3.2-intel-2014b.eb new file mode 100644 index 0000000000..c6cd1518b9 --- /dev/null +++ b/easybuild/easyconfigs/l/libXft/libXft-2.3.2-intel-2014b.eb @@ -0,0 +1,29 @@ +name = 'libXft' +version = '2.3.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('kbproto', '1.0.6'), + ('renderproto', '0.11'), +] + +dependencies = [ + ('libX11', '1.6.2', '-Python-2.7.8'), + ('libXrender', '0.9.8'), + ('freetype', '2.5.3'), + ('fontconfig', '2.11.1'), +] + +sanity_check_paths = { + 'files': ['lib/libXft.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-foss-2014b.eb b/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-foss-2014b.eb new file mode 100644 index 0000000000..7372fb8cda --- /dev/null +++ b/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-foss-2014b.eb @@ -0,0 +1,26 @@ +name = 'libXrender' +version = '0.9.8' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('renderproto', '0.11'), +] + +dependencies = [ + ('kbproto', '1.0.6'), + ('libX11', '1.6.2', '-Python-2.7.8'), +] + +sanity_check_paths = { + 'files': ['lib/libXrender.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-intel-2014b.eb b/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-intel-2014b.eb new file mode 100644 index 0000000000..3c6f25ff46 --- /dev/null +++ b/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-intel-2014b.eb @@ -0,0 +1,26 @@ +name = 'libXrender' +version = '0.9.8' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('renderproto', '0.11'), +] + +dependencies = [ + ('kbproto', '1.0.6'), + ('libX11', '1.6.2', '-Python-2.7.8'), +] + +sanity_check_paths = { + 'files': ['lib/libXrender.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb index ff4cf4df66..15bea502dd 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb @@ -16,13 +16,14 @@ dependencies = [ ('FLTK', '1.3.2'), ('libX11', '1.6.2', '-Python-2.7.8'), ('fontconfig', '2.11.1'), + ('libXft', '2.3.2'), ] patches = ['fltk.patch'] # RELION expects FLTK to be in external/fltk-1.3.0 configopts = ['--enable-mpi --enable-openmp && ln -s $EBROOTFLTK/include external/fltk-1.3.0'] -makeopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11" ' +makeopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11 -lXft -lfontconfig" ' installopts = " && cp %(installdir)s/bin/relion_maingui %(installdir)s/bin/relion " sanity_check_paths = { diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb index aca1ceb4db..82246fce63 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb @@ -16,15 +16,14 @@ dependencies = [ ('FLTK', '1.3.2'), ('libX11', '1.6.2', '-Python-2.7.8'), ('fontconfig', '2.11.1'), + ('libXft', '2.3.2'), ] - +i patches = ['fltk.patch'] -configopts = ['--enable-mpi'] - # RELION expects FLTK to be in external/fltk-1.3.0 configopts = ['--enable-mpi --enable-openmp && ln -s $EBROOTFLTK/include external/fltk-1.3.0'] -makeopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11" ' +makeopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11 -lXft -lfontconfig" ' # users expect the maingui binary to be called relion installopts = " && cp %(installdir)s/bin/relion_maingui %(installdir)s/bin/relion " diff --git a/easybuild/easyconfigs/r/renderproto/renderproto-0.11-foss-2014b.eb b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-foss-2014b.eb new file mode 100644 index 0000000000..930e209875 --- /dev/null +++ b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-foss-2014b.eb @@ -0,0 +1,18 @@ +name = 'renderproto' +version = '0.11' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "Xrender protocol and ancillary headers" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files' : ['include/X11/extensions/%s' % x for x in ['render.h', 'renderproto.h']], + 'dirs' : [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2014b.eb b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2014b.eb new file mode 100644 index 0000000000..03b199aa33 --- /dev/null +++ b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2014b.eb @@ -0,0 +1,18 @@ +name = 'renderproto' +version = '0.11' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "Xrender protocol and ancillary headers" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files' : ['include/X11/extensions/%s' % x for x in ['render.h', 'renderproto.h']], + 'dirs' : [], +} + +moduleclass = 'devel' -- GitLab From a081d12a0676edd5d5c6aec3074d46834bf21337 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 12 Aug 2014 16:06:04 +0200 Subject: [PATCH 0050/1217] fixed typo --- easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb index 82246fce63..14e054ea83 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb @@ -18,7 +18,7 @@ dependencies = [ ('fontconfig', '2.11.1'), ('libXft', '2.3.2'), ] -i + patches = ['fltk.patch'] # RELION expects FLTK to be in external/fltk-1.3.0 -- GitLab From d9bf95c147044d8f7f2f2a42c1c0781229fe9033 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 12 Aug 2014 16:37:17 +0200 Subject: [PATCH 0051/1217] added libXext as dependency for RELION --- .../libXext-1.3.2-foss-2014b-Python-2.7.8.eb | 32 +++++++++++++++++++ .../libXext-1.3.2-intel-2014-Python-2.7.8.eb | 32 +++++++++++++++++++ .../r/RELION/RELION-1.3-foss-2014b.eb | 7 +++- .../r/RELION/RELION-1.3-intel-2014b.eb | 8 ++++- 4 files changed, 77 insertions(+), 2 deletions(-) create mode 100644 easybuild/easyconfigs/l/libXext/libXext-1.3.2-foss-2014b-Python-2.7.8.eb create mode 100644 easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014-Python-2.7.8.eb diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-foss-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000..3e5c38bc21 --- /dev/null +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-foss-2014b-Python-2.7.8.eb @@ -0,0 +1,32 @@ +name = 'libXext' +version = '1.3.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """Common X Extensions library""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +versionsuffix = '-Python-2.7.8' +builddependencies = [ + ('kbproto', '1.0.6'), +] +dependencies = [ + ('xproto','7.0.26'), + ('libX11', '1.6.2', versionsuffix), + ('xextproto', '7.3.0'), +] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014-Python-2.7.8.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014-Python-2.7.8.eb new file mode 100644 index 0000000000..826d747a36 --- /dev/null +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014-Python-2.7.8.eb @@ -0,0 +1,32 @@ +name = 'libXext' +version = '1.3.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """Common X Extensions library""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +versionsuffix = '-Python-2.7.8' +builddependencies = [ + ('kbproto', '1.0.6'), + ('xproto','7.0.26'), + ('xextproto', '7.3.0'), +] +dependencies = [ + ('libX11', '1.6.2', versionsuffix), +] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb index 15bea502dd..893947e06c 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb @@ -12,11 +12,16 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = ['http://www2.mrc-lmb.cam.ac.uk/groups/scheres/18jun14'] sources = [SOURCELOWER_TAR_BZ2] +pythonversion = '-Python-2.7.8' +builddependencies = [ + ('xextproto', '7.3.0'), +] dependencies = [ ('FLTK', '1.3.2'), - ('libX11', '1.6.2', '-Python-2.7.8'), + ('libX11', '1.6.2', pythonversion), ('fontconfig', '2.11.1'), ('libXft', '2.3.2'), + ('libXext', '1.3.2', pythonversion), ] patches = ['fltk.patch'] diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb index 14e054ea83..b67def0db8 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb @@ -11,12 +11,18 @@ toolchain = {'name': 'intel', 'version': '2014b'} source_urls = ['http://www2.mrc-lmb.cam.ac.uk/groups/scheres/18jun14'] sources = [SOURCELOWER_TAR_BZ2] +pythonversion = '-Python-2.7.8' + +builddependencies = [ + ('xextproto', '7.3.0'), +] dependencies = [ ('FFTW', '3.3.4'), ('FLTK', '1.3.2'), - ('libX11', '1.6.2', '-Python-2.7.8'), + ('libX11', '1.6.2', pythonversion), ('fontconfig', '2.11.1'), ('libXft', '2.3.2'), + ('libXext', '1.3.2', pythonversion), ] patches = ['fltk.patch'] -- GitLab From de11b43a8332dca2d574cf79d8bde1c9d4d74d27 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 12 Aug 2014 17:20:07 +0200 Subject: [PATCH 0052/1217] added Xinerama as dependency for RELION --- .../libXinerama-1.1.3-foss-2014b.eb | 30 +++++++++++++++++++ .../libXinerama-1.1.3-intel-2014b.eb | 30 +++++++++++++++++++ .../r/RELION/RELION-1.3-foss-2014b.eb | 3 +- .../r/RELION/RELION-1.3-intel-2014b.eb | 3 +- .../xineramaproto-1.2.1-foss-2014b.eb | 18 +++++++++++ .../xineramaproto-1.2.1-intel-2014b.eb | 18 +++++++++++ 6 files changed, 100 insertions(+), 2 deletions(-) create mode 100644 easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-foss-2014b.eb create mode 100644 easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2014b.eb create mode 100644 easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-foss-2014b.eb create mode 100644 easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2014b.eb diff --git a/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-foss-2014b.eb b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-foss-2014b.eb new file mode 100644 index 0000000000..db2bef5596 --- /dev/null +++ b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-foss-2014b.eb @@ -0,0 +1,30 @@ +name = 'libXinerama' +version = '1.1.3' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """Xinerama multiple monitor library""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +pythonversion = '-Python-2.7.8' +builddependencies = [ + ('kbproto', '1.0.6'), + ('xineramaproto', '1.2.1'), + ('xextproto', '7.3.0'), +] +dependencies = [ + ('xproto','7.0.26'), + ('libX11', '1.6.2', pythonversion ), + ('libXext', '1.3.2', pythonversion), +] + +sanity_check_paths = { + 'files': ['lib/libXinerama.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2014b.eb b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2014b.eb new file mode 100644 index 0000000000..a36d70172e --- /dev/null +++ b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2014b.eb @@ -0,0 +1,30 @@ +name = 'libXinerama' +version = '1.1.3' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """Xinerama multiple monitor library""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +pythonversion = '-Python-2.7.8' +builddependencies = [ + ('kbproto', '1.0.6'), + ('xineramaproto', '1.2.1'), + ('xextproto', '7.3.0'), +] +dependencies = [ + ('xproto','7.0.26'), + ('libX11', '1.6.2', pythonversion ), + ('libXext', '1.3.2', pythonversion), +] + +sanity_check_paths = { + 'files': ['lib/libXinerama.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb index 893947e06c..41571de337 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb @@ -22,13 +22,14 @@ dependencies = [ ('fontconfig', '2.11.1'), ('libXft', '2.3.2'), ('libXext', '1.3.2', pythonversion), + ('libXinerama', '1.1.3'), ] patches = ['fltk.patch'] # RELION expects FLTK to be in external/fltk-1.3.0 configopts = ['--enable-mpi --enable-openmp && ln -s $EBROOTFLTK/include external/fltk-1.3.0'] -makeopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11 -lXft -lfontconfig" ' +makeopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11 -lXft -lfontconfig -lXext -lXinerama" ' installopts = " && cp %(installdir)s/bin/relion_maingui %(installdir)s/bin/relion " sanity_check_paths = { diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb index b67def0db8..baeb0f4e9d 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb @@ -23,13 +23,14 @@ dependencies = [ ('fontconfig', '2.11.1'), ('libXft', '2.3.2'), ('libXext', '1.3.2', pythonversion), + ('libXinerama', '1.1.3'), ] patches = ['fltk.patch'] # RELION expects FLTK to be in external/fltk-1.3.0 configopts = ['--enable-mpi --enable-openmp && ln -s $EBROOTFLTK/include external/fltk-1.3.0'] -makeopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11 -lXft -lfontconfig" ' +makeopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11 -lXft -lfontconfig -lXext -lXinerama" ' # users expect the maingui binary to be called relion installopts = " && cp %(installdir)s/bin/relion_maingui %(installdir)s/bin/relion " diff --git a/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-foss-2014b.eb b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-foss-2014b.eb new file mode 100644 index 0000000000..923da1433b --- /dev/null +++ b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-foss-2014b.eb @@ -0,0 +1,18 @@ +name = 'xineramaproto' +version = '1.2.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "X protocol and ancillary headers for xinerama" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files' : ['include/X11/extensions/panoramiXproto.h'], + 'dirs' : [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2014b.eb b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2014b.eb new file mode 100644 index 0000000000..a162834890 --- /dev/null +++ b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2014b.eb @@ -0,0 +1,18 @@ +name = 'xineramaproto' +version = '1.2.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "X protocol and ancillary headers for xinerama" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files' : ['include/X11/extensions/panoramiXproto.h'], + 'dirs' : [] +} + +moduleclass = 'devel' -- GitLab From f11a48a7040e02bbb5a7ab04f139f143636cd3e7 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Wed, 20 Aug 2014 13:46:16 +0200 Subject: [PATCH 0053/1217] added new cutadapt for intel --- .../cutadapt-1.5-intel2014b-Python-2.7.8.eb | 33 +++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel2014b-Python-2.7.8.eb diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel2014b-Python-2.7.8.eb new file mode 100644 index 0000000000..9be9435a32 --- /dev/null +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel2014b-Python-2.7.8.eb @@ -0,0 +1,33 @@ +easyblock = "PythonPackage" + +name = 'cutadapt' +version = '1.5' + +homepage = 'http://code.google.com/p/cutadapt/' +description = """ cutadapt removes adapter sequences + from high-throughput sequencing data. This is usually + necessary when the read length of the sequencing machine + is longer than the molecule that is sequenced, for + example when sequencing microRNAs. """ + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['https://pypi.python.org/packages/source/c/cutadapt/'] +sources = ['%(namelower)s-%(version)s.tar.gz'] + +python = 'Python' +pyver = '2.7.8' +pyshortver = '.'.join(pyver.split('.')[:2]) + +versionsuffix = "-%s-%s" % (python, pyver) + +dependencies = [ + (python, pyver), +] + +sanity_check_paths = { + 'files': ['bin/cutadapt','lib/python2.7/site-packages/cutadapt/_align.so',], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From 3f44802c275982e41ebe2b1bd100abb7994c951a Mon Sep 17 00:00:00 2001 From: pescobar Date: Sat, 23 Aug 2014 16:02:59 +0200 Subject: [PATCH 0054/1217] pigz easyconfigs for goolf-1.4.10 and ictce-6.2.5 --- .../p/pigz/pigz-2.3.1-goolf-1.4.10.eb | 37 +++++++++++++++++++ .../p/pigz/pigz-2.3.1-ictce-6.2.5.eb | 37 +++++++++++++++++++ 2 files changed, 74 insertions(+) create mode 100644 easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb create mode 100644 easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb new file mode 100644 index 0000000000..7caa293ce4 --- /dev/null +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'pigz' +version = '2.3.1' + +homepage = 'http://zlib.net/pigz/' +description = """ pigz, which stands for parallel implementation of gzip, is a fully + functional replacement for gzip that exploits multiple processors and multiple cores + to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib + and pthread libraries. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://zlib.net/pigz/'] +sources = [SOURCE_TAR_GZ] + +# README recommends zlib 1.2.6 or higher +dependencies = [('zlib', '1.2.8')] + +makeopts = ' CC=$CC' + +parallel = 1 + +files_to_copy = [(["pigz", "unpigz"], "bin")] + +sanity_check_paths = { + 'files': ["bin/pigz", "bin/unpigz"], + 'dirs': [""], +} + +moduleclass = 'tools' + diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb new file mode 100644 index 0000000000..1f7d3bd2f0 --- /dev/null +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'pigz' +version = '2.3.1' + +homepage = 'http://zlib.net/pigz/' +description = """ pigz, which stands for parallel implementation of gzip, is a fully + functional replacement for gzip that exploits multiple processors and multiple cores + to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib + and pthread libraries. """ + +toolchain = {'name': 'ictce', 'version': '6.2.5'} + +source_urls = ['http://zlib.net/pigz/'] +sources = [SOURCE_TAR_GZ] + +# README recommends zlib 1.2.6 or higher +dependencies = [('zlib', '1.2.8')] + +makeopts = ' CC=$CC' + +parallel = 1 + +files_to_copy = [(["pigz", "unpigz"], "bin")] + +sanity_check_paths = { + 'files': ["bin/pigz", "bin/unpigz"], + 'dirs': [""], +} + +moduleclass = 'tools' + -- GitLab From 38f10a077ab57a5b4d0537edfdce11dd7e479125 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 26 Aug 2014 15:31:36 +0200 Subject: [PATCH 0055/1217] added ctffind --- .../c/ctffind/ctffind-140609-foss-2014b.eb | 27 +++++++++++++++++++ .../c/ctffind/ctffind-140609-intel-2014b.eb | 27 +++++++++++++++++++ 2 files changed, 54 insertions(+) create mode 100644 easybuild/easyconfigs/c/ctffind/ctffind-140609-foss-2014b.eb create mode 100644 easybuild/easyconfigs/c/ctffind/ctffind-140609-intel-2014b.eb diff --git a/easybuild/easyconfigs/c/ctffind/ctffind-140609-foss-2014b.eb b/easybuild/easyconfigs/c/ctffind/ctffind-140609-foss-2014b.eb new file mode 100644 index 0000000000..86b24eee82 --- /dev/null +++ b/easybuild/easyconfigs/c/ctffind/ctffind-140609-foss-2014b.eb @@ -0,0 +1,27 @@ +easyblock='MakeCp' + +name = 'ctffind' +version = '140609' + +homepage = 'http://grigoriefflab.janelia.org/ctf' +description = """CTFFIND3 and CTFTILT are two programs for finding CTFs of electron micrographs [1]. The program CTFFIND3 + is an updated version of the program CTFFIND2, which was developed in 1998 by Nikolaus Grigorieff at the MRC Laboratory + of Molecular Biology in Cambridge, UK with financial support from the MRC. This software is licensed under the terms of + the GNU Public License version 3 (GPLv3). +""" + +toolchain = {'name': 'foss', 'version': '2014b'} + +source_urls = ['http://grigoriefflab.janelia.org/sites/default/files/'] +sources = ['ctf_%(version)s.tar.gz'] + + +makeopts = '-f Makefile_linux_mp' +files_to_copy = [(["ctftilt_mp.exe", 'ctffind3_mp.exe'], "bin"), "README.txt"] + +sanity_check_paths = { + 'files': ["bin/ctftilt_mp.exe", 'bin/ctftilt_mp.exe'], + 'dirs': [], +} + +moduleclass = '' diff --git a/easybuild/easyconfigs/c/ctffind/ctffind-140609-intel-2014b.eb b/easybuild/easyconfigs/c/ctffind/ctffind-140609-intel-2014b.eb new file mode 100644 index 0000000000..ef17a37297 --- /dev/null +++ b/easybuild/easyconfigs/c/ctffind/ctffind-140609-intel-2014b.eb @@ -0,0 +1,27 @@ +easyblock='MakeCp' + +name = 'ctffind' +version = '140609' + +homepage = 'http://grigoriefflab.janelia.org/ctf' +description = """CTFFIND3 and CTFTILT are two programs for finding CTFs of electron micrographs [1]. The program CTFFIND3 + is an updated version of the program CTFFIND2, which was developed in 1998 by Nikolaus Grigorieff at the MRC Laboratory + of Molecular Biology in Cambridge, UK with financial support from the MRC. This software is licensed under the terms of + the GNU Public License version 3 (GPLv3). +""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://grigoriefflab.janelia.org/sites/default/files/'] +sources = ['ctf_%(version)s.tar.gz'] + + +makeopts = '-f Makefile_linux_mp' +files_to_copy = [(["ctftilt_mp.exe", 'ctffind3_mp.exe'], "bin"), "README.txt"] + +sanity_check_paths = { + 'files': ["bin/ctftilt_mp.exe", 'bin/ctftilt_mp.exe'], + 'dirs': [], +} + +moduleclass = '' -- GitLab From 4307e8e29d3efd6d64223e6b80cd70e320a3413f Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Wed, 27 Aug 2014 12:15:14 +0200 Subject: [PATCH 0056/1217] Kerberos V5 with intel 2014b toolchain --- .../Kerbros_V5-1.12.2-intel-2014b.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/k/Kerberos_V5/Kerbros_V5-1.12.2-intel-2014b.eb diff --git a/easybuild/easyconfigs/k/Kerberos_V5/Kerbros_V5-1.12.2-intel-2014b.eb b/easybuild/easyconfigs/k/Kerberos_V5/Kerbros_V5-1.12.2-intel-2014b.eb new file mode 100644 index 0000000000..91e668da5d --- /dev/null +++ b/easybuild/easyconfigs/k/Kerberos_V5/Kerbros_V5-1.12.2-intel-2014b.eb @@ -0,0 +1,31 @@ +name = 'Kerberos_V5' +version = '1.12.2' + +homepage = 'http://web.mit.edu/kerberos/dist/index.html' +description = """Kerberos is a network authentication protocol. + It is designed to provide strong authentication for client/server + applications by using secret-key cryptography. + A free implementation of this protocol is available from the + Massachusetts Institute of Technology.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = ['krb5-%(version)s-signed.tar'] +source_urls = ['http://web.mit.edu/kerberos/dist/krb5/%(version_major_minor)s/'] + +preconfigopts = 'tar xvf krb5-%(version)s.tar.gz && cd krb5-%(version)s/src && ' + +prebuildopts = 'cd krb5-%(version)s/src && ' + +preinstallopts = 'cd krb5-%(version)s/src && ' + +sanity_check_paths = { + 'files': ['bin/krb5-config', 'bin/gss-client', 'bin/kadmin', + 'sbin/kdb5_util', 'sbin/gss-server', 'sbin/kadmind', + 'lib/libkrb5.so', 'lib/libgssapi_krb5.so', 'lib/libkadm5clnt.so', + 'lib/libkadm5srv.so', 'lib/libkdb5.so', 'lib/libk5crypto.so', + ], + 'dirs': ['lib/krb5'] +} + +moduleclass = 'system' -- GitLab From 4b500f8a7f37a8c3cbaa253d2e830ac05e34ab0b Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Wed, 27 Aug 2014 12:17:10 +0200 Subject: [PATCH 0057/1217] Typo in filename corrected --- ...V5-1.12.2-intel-2014b.eb => Kerberos_V5-1.12.2-intel-2014b.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/k/Kerberos_V5/{Kerbros_V5-1.12.2-intel-2014b.eb => Kerberos_V5-1.12.2-intel-2014b.eb} (100%) diff --git a/easybuild/easyconfigs/k/Kerberos_V5/Kerbros_V5-1.12.2-intel-2014b.eb b/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb similarity index 100% rename from easybuild/easyconfigs/k/Kerberos_V5/Kerbros_V5-1.12.2-intel-2014b.eb rename to easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb -- GitLab From e35008f5e94e9c5075bc6b1018e94df2df45613d Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Wed, 27 Aug 2014 15:21:04 +0200 Subject: [PATCH 0058/1217] Orca version 3.0.2 --- .../o/ORCA/ORCA-3_0_2-linux_x86-64.eb | 32 +++++++++++++++++++ 1 file changed, 32 insertions(+) create mode 100644 easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb new file mode 100644 index 0000000000..7942dc6b14 --- /dev/null +++ b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb @@ -0,0 +1,32 @@ +easyblock = "PackedBinary" + +name = "ORCA" +version = '3_0_2-linux_x86-64' + +homepage = 'http://cec.mpg.de/forum/' +description = """ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry + with specific emphasis on spectroscopic properties of open-shell molecules. + It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- + and multireference correlated ab initio methods. + It can also treat environmental and relativistic effects.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['%%(namelower)s_%s_%s.tbz' % (version.split('-')[0], '-'.join(version.split('-')[1:]))] + +dependencies = [('OpenMPI', '1.8.1', '-GCC-4.8.3')] + +sanity_check_paths = { + 'files': ['orca_%s%s' % (x,y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', + 'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc', + 'rocis', 'scf', 'scfgrad', 'soc'] + for y in ["", "_mpi"]] + \ + ['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib', + 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', + 'md', 'mergefrag', 'ndoint', 'numfreq', 'plot', + 'pltvib', 'pop', 'rel', 'vib', 'vpot']] + \ + ['orca', 'otool_cosmo'], + 'dirs': [], +} + +moduleclass = 'chem' -- GitLab From 1b1aa214020b075acaf71fe75b32202ec59c0f15 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Tue, 2 Sep 2014 10:16:29 +0200 Subject: [PATCH 0059/1217] Perl extension providing access to the GSSAPIv2 library added --- .../GSSAPI-0.27-intel-2014b-Perl-5.20.0.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/g/GSSAPI/GSSAPI-0.27-intel-2014b-Perl-5.20.0.eb diff --git a/easybuild/easyconfigs/g/GSSAPI/GSSAPI-0.27-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/g/GSSAPI/GSSAPI-0.27-intel-2014b-Perl-5.20.0.eb new file mode 100644 index 0000000000..c0f5936e58 --- /dev/null +++ b/easybuild/easyconfigs/g/GSSAPI/GSSAPI-0.27-intel-2014b-Perl-5.20.0.eb @@ -0,0 +1,28 @@ +easyblock = 'PerlModule' + +name = 'GSSAPI' +version = '0.28' + +homepage = 'http://search.cpan.org/~agrolms/GSSAPI-0.28/' +description = """Perl extension providing access to the GSSAPIv2 library.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/CPAN/authors/id/A/AG/AGROLMS/'] +sources = [SOURCE_TAR_GZ] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ('Kerberos_V5', '1.12.2'), +] + +options = {'modulename': 'GSSAPI'} + +moduleclass = 'system' + + -- GitLab From 57a384e718acac58986e93cb1f98bdff1562acf1 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 4 Sep 2014 09:31:20 +0200 Subject: [PATCH 0060/1217] Libidn with perl binding using intel2014b --- .../l/libidn/libidn-1.29-intel-2014b.eb | 14 ++++++++++ ...Net-LibIDN-0.12-intel-2014b-Perl-5.20.0.eb | 27 +++++++++++++++++++ 2 files changed, 41 insertions(+) create mode 100644 easybuild/easyconfigs/l/libidn/libidn-1.29-intel-2014b.eb create mode 100644 easybuild/easyconfigs/n/NetLibIDN/Net-LibIDN-0.12-intel-2014b-Perl-5.20.0.eb diff --git a/easybuild/easyconfigs/l/libidn/libidn-1.29-intel-2014b.eb b/easybuild/easyconfigs/l/libidn/libidn-1.29-intel-2014b.eb new file mode 100644 index 0000000000..988a2ea427 --- /dev/null +++ b/easybuild/easyconfigs/l/libidn/libidn-1.29-intel-2014b.eb @@ -0,0 +1,14 @@ +name = 'libidn' +version = '1.29' + +homepage = 'http://www.gnu.org/software/libidn' +description = """GNU Libidn is a fully documented implementation of the Stringprep, Punycode and IDNA specifications. +Libidn's purpose is to encode and decode internationalized domain names.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [GNU_SOURCE] +#source_urls = ['http://ftp.gnu.org/gnu/%(namelower)s'] +sources = [SOURCELOWER_TAR_GZ] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/n/NetLibIDN/Net-LibIDN-0.12-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/n/NetLibIDN/Net-LibIDN-0.12-intel-2014b-Perl-5.20.0.eb new file mode 100644 index 0000000000..5e334de5db --- /dev/null +++ b/easybuild/easyconfigs/n/NetLibIDN/Net-LibIDN-0.12-intel-2014b-Perl-5.20.0.eb @@ -0,0 +1,27 @@ +easyblock = 'PerlModule' + +name = 'Net-LibIDN' +version = '0.12' + +homepage = 'http://search.cpan.org/~thor/Net-LibIDN-0.12/' +description = """This module provides Perl bindings for GNU Libidn.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/CPAN/authors/id/T/TH/THOR/'] +sources = [SOURCE_TAR_GZ] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ('libidn', '1.29'), +] + +options = {'modulename': 'Net::LibIDN'} + +moduleclass = 'system' + -- GitLab From 407724b244d55c57c4aa2accbc91292e3c6dc04d Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 4 Sep 2014 09:32:51 +0200 Subject: [PATCH 0061/1217] Commented line removed --- easybuild/easyconfigs/l/libidn/libidn-1.29-intel-2014b.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libidn/libidn-1.29-intel-2014b.eb b/easybuild/easyconfigs/l/libidn/libidn-1.29-intel-2014b.eb index 988a2ea427..25e49cc845 100644 --- a/easybuild/easyconfigs/l/libidn/libidn-1.29-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libidn/libidn-1.29-intel-2014b.eb @@ -8,7 +8,6 @@ Libidn's purpose is to encode and decode internationalized domain names.""" toolchain = {'name': 'intel', 'version': '2014b'} source_urls = [GNU_SOURCE] -#source_urls = ['http://ftp.gnu.org/gnu/%(namelower)s'] sources = [SOURCELOWER_TAR_GZ] moduleclass = 'lib' -- GitLab From 4efef5a8060d556ee36ea8564284ff737e6ecc77 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 4 Sep 2014 10:29:31 +0200 Subject: [PATCH 0062/1217] Expat with perl bindings --- .../e/expat/expat-2.1.0-intel-2014b.eb | 13 +++++++++ ...XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb | 28 +++++++++++++++++++ ...XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb | 26 +++++++++++++++++ .../XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb | 26 +++++++++++++++++ 4 files changed, 93 insertions(+) create mode 100644 easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb create mode 100644 easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb create mode 100644 easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb create mode 100644 easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb new file mode 100644 index 0000000000..2260696155 --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb @@ -0,0 +1,13 @@ +name = 'expat' +version = '2.1.0' + +homepage = 'http://expat.sourceforge.net/' +description = """Expat is an XML parser library written in C. It is a stream-oriented parser in which an application + registers handlers for things the parser might find in the XML document (like start tags)""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb new file mode 100644 index 0000000000..53b7200a4f --- /dev/null +++ b/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb @@ -0,0 +1,28 @@ +easyblock = 'PerlModule' + +name = 'XML-Dumper' +version = '0.81' + +homepage = 'http://search.cpan.org/~mikewong/XML-Dumper-0.81/' +description = """XML::Dumper dumps Perl data to a structured XML format. +XML::Dumper can also read XML data that was previously dumped +by the module and convert it back to Perl.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +source_urls = ['http://www.cpan.org/CPAN/authors/id/M/MI/MIKEWONG/'] +sources = [SOURCE_TAR_GZ] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ('XML-Parser', '2.41', versionsuffix), +] + +options = {'modulename': 'XML::Dumper'} + +moduleclass = 'data' + + diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb new file mode 100644 index 0000000000..de3b8a7782 --- /dev/null +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb @@ -0,0 +1,26 @@ +easyblock = 'PerlModule' + +name = 'XML-Parser' +version = '2.41' + +homepage = 'http://search.cpan.org/~toddr/XML-Parser-2.41/' +description = """This is a Perl extension interface to James Clark's XML parser, expat.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +source_urls = ['http://www.cpan.org/CPAN/authors/id/T/TO/TODDR/'] +sources = [SOURCE_TAR_GZ] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ('expat', '2.1.0'), +] + +options = {'modulename': 'XML::Parser'} + +moduleclass = 'data' + + diff --git a/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb new file mode 100644 index 0000000000..0835faa944 --- /dev/null +++ b/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb @@ -0,0 +1,26 @@ +easyblock = 'PerlModule' + +name = 'XML-Twig' +version = '3.48' + +homepage = 'http://search.cpan.org/~mirod/XML-Twig-3.48/' +description = """XML::Twig is (yet another!) XML transformation module.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +source_urls = ['http://www.cpan.org/CPAN/authors/id/M/MI/MIROD/'] +sources = [SOURCE_TAR_GZ] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ('XML-Parser', '2.41', versionsuffix), +] + +options = {'modulename': 'XML::Twig'} + +moduleclass = 'data' + + -- GitLab From 54247aef5c88346ad9ebb6f67c2e0bbb3b6be89a Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 4 Sep 2014 15:09:13 +0200 Subject: [PATCH 0063/1217] MySQL client only with dependencies and perl bindings --- .../DBD-mysql-intel-2014b-Perl-5.20.0.eb | 26 ++++++++++++++ .../l/libevent/libevent-2.0.21-intel-2014b.eb | 14 ++++++++ .../MySQL-5.6.20-intel-2014b-clientonly.eb | 36 +++++++++++++++++++ 3 files changed, 76 insertions(+) create mode 100644 easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-intel-2014b-Perl-5.20.0.eb create mode 100644 easybuild/easyconfigs/l/libevent/libevent-2.0.21-intel-2014b.eb create mode 100644 easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb diff --git a/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-intel-2014b-Perl-5.20.0.eb new file mode 100644 index 0000000000..d6576e400b --- /dev/null +++ b/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-intel-2014b-Perl-5.20.0.eb @@ -0,0 +1,26 @@ +easyblock = 'PerlModule' + +name = 'DBD-mysql' +version = '4.028' + +homepage = 'http://search.cpan.org/~capttofu/DBD-mysql-4.028/' +description = """Perl binding for MySQL""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://www.cpan.org/CPAN/authors/id/C/CA/CAPTTOFU/'] +sources = [SOURCE_TAR_GZ] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ("MySQL", "5.6.20", "-clientonly"), +] + + +options = {'modulename': 'DBD::mysql'} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/l/libevent/libevent-2.0.21-intel-2014b.eb b/easybuild/easyconfigs/l/libevent/libevent-2.0.21-intel-2014b.eb new file mode 100644 index 0000000000..76c331f19f --- /dev/null +++ b/easybuild/easyconfigs/l/libevent/libevent-2.0.21-intel-2014b.eb @@ -0,0 +1,14 @@ +name = 'libevent' +version = '2.0.21' + +homepage = 'http://libevent.org/' +description = """The libevent API provides a mechanism to execute a callback function when a specific + event occurs on a file descriptor or after a timeout has been reached. + Furthermore, libevent also support callbacks due to signals or regular timeouts.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['https://github.com/downloads/libevent/libevent/'] +sources = ['%(name)s-%(version)s-stable.tar.gz'] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb b/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb new file mode 100644 index 0000000000..fbf851a0cf --- /dev/null +++ b/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb @@ -0,0 +1,36 @@ +easyblock = 'CMakeMake' + +name = 'MySQL' +version = '5.6.20' +versionsuffix = '-clientonly' + +homepage = 'http://www.mysql.com/' +description = """MySQL is (as of March 2014) the world's second most widely used + open-source relational database management system (RDBMS).""" + +#http://dev.mysql.com/get/Downloads/MySQL-5.6/mysql-5.6.20.tar.gz +source_urls = ['http://dev.mysql.com/get/Downloads/MySQL-%(version_major_minor)s/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'intel', 'version': '2014b'} + +osdependencies = [('openssl-devel', 'libssl-dev')] + +dependencies = [ + ('libevent', '2.0.21'), + ('libreadline', '6.3'), + ('zlib', '1.2.8'), +] + +builddependencies = [ + ('CMake', '3.0.0'), +] + +configopts = "-DWITHOUT_SERVER=ON " + +sanity_check_paths = { + 'files': ['bin/mysql'], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From fed9809afb250d5341308daf7554b7495189cc08 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 4 Sep 2014 15:41:54 +0200 Subject: [PATCH 0064/1217] SQLite with dependencies and Perl binding --- ...DBD-SQLite-1.42-intel-2014b-Perl-5.20.0.eb | 26 ++++++++++++++ .../s/SQLite/SQLite-3.8.6-intel-2014b.eb | 35 +++++++++++++++++++ .../t/Tcl/Tcl-8.6.2-intel-2014b.eb | 19 ++++++++++ 3 files changed, 80 insertions(+) create mode 100644 easybuild/easyconfigs/d/DBD-SQLite/DBD-SQLite-1.42-intel-2014b-Perl-5.20.0.eb create mode 100644 easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-intel-2014b.eb diff --git a/easybuild/easyconfigs/d/DBD-SQLite/DBD-SQLite-1.42-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/d/DBD-SQLite/DBD-SQLite-1.42-intel-2014b-Perl-5.20.0.eb new file mode 100644 index 0000000000..27c8c0f18e --- /dev/null +++ b/easybuild/easyconfigs/d/DBD-SQLite/DBD-SQLite-1.42-intel-2014b-Perl-5.20.0.eb @@ -0,0 +1,26 @@ +easyblock = 'PerlModule' + +name = 'DBD-SQLite' +version = '1.42' + +homepage = 'http://search.cpan.org/~ishigaki/DBD-SQLite-1.42/' +description = """Perl binding for SQLite""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://www.cpan.org/CPAN/authors/id/I/IS/ISHIGAKI/'] +sources = [SOURCE_TAR_GZ] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ("SQLite", "3.8.6"), +] + + +options = {'modulename': 'DBD::SQLite'} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb new file mode 100644 index 0000000000..4a41701d6a --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb @@ -0,0 +1,35 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +name = 'SQLite' +version = '3.8.6' + +homepage = 'http://www.sqlite.org/' +description = "SQLite: SQL Database Engine in a C Library" + +# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz +source_urls = ['http://www.sqlite.org/2014/'] +sources = ['sqlite-autoconf-%s0%s0%s00.tar.gz' % tuple(version.split('.'))] # very weird way to calculate your filename + +toolchain = {'name': 'intel', 'version': '2014b'} + +dependencies = [ + ('libreadline', '6.3'), + ('Tcl', '8.6.2'), +] + +sanity_check_paths = { + 'files': ['bin/sqlite3'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-intel-2014b.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-intel-2014b.eb new file mode 100644 index 0000000000..a1029dc7e5 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-intel-2014b.eb @@ -0,0 +1,19 @@ +name = 'Tcl' +version = '8.6.2' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' -- GitLab From 414b55fe6ade8bfd42bba1808fafe47ac96895fa Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Fri, 5 Sep 2014 10:46:42 +0200 Subject: [PATCH 0065/1217] Download link changed to cpan.metacpan.org --- .../x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb | 2 +- .../x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb | 2 +- .../x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb index 53b7200a4f..5898d34cc1 100644 --- a/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb +++ b/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb @@ -9,7 +9,7 @@ XML::Dumper can also read XML data that was previously dumped by the module and convert it back to Perl.""" toolchain = {'name': 'intel', 'version': '2014b'} -source_urls = ['http://www.cpan.org/CPAN/authors/id/M/MI/MIKEWONG/'] +source_urls = ['http://cpan.metacpan.org/authors/id/M/MI/MIKEWONG/'] sources = [SOURCE_TAR_GZ] perl = 'Perl' diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb index de3b8a7782..189570ff1a 100644 --- a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb @@ -7,7 +7,7 @@ homepage = 'http://search.cpan.org/~toddr/XML-Parser-2.41/' description = """This is a Perl extension interface to James Clark's XML parser, expat.""" toolchain = {'name': 'intel', 'version': '2014b'} -source_urls = ['http://www.cpan.org/CPAN/authors/id/T/TO/TODDR/'] +source_urls = ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'] sources = [SOURCE_TAR_GZ] perl = 'Perl' diff --git a/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb index 0835faa944..f0ac5137d0 100644 --- a/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb +++ b/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb @@ -7,7 +7,7 @@ homepage = 'http://search.cpan.org/~mirod/XML-Twig-3.48/' description = """XML::Twig is (yet another!) XML transformation module.""" toolchain = {'name': 'intel', 'version': '2014b'} -source_urls = ['http://www.cpan.org/CPAN/authors/id/M/MI/MIROD/'] +source_urls = ['http://cpan.metacpan.org/authors/id/M/MI/MIROD/'] sources = [SOURCE_TAR_GZ] perl = 'Perl' -- GitLab From 407e662048489213e23d0272b4dd24b6deb96ea2 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Fri, 5 Sep 2014 10:51:45 +0200 Subject: [PATCH 0066/1217] Download link changed to cpan.metacpan.org --- .../n/NetLibIDN/Net-LibIDN-0.12-intel-2014b-Perl-5.20.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/n/NetLibIDN/Net-LibIDN-0.12-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/n/NetLibIDN/Net-LibIDN-0.12-intel-2014b-Perl-5.20.0.eb index 5e334de5db..e208935ff8 100644 --- a/easybuild/easyconfigs/n/NetLibIDN/Net-LibIDN-0.12-intel-2014b-Perl-5.20.0.eb +++ b/easybuild/easyconfigs/n/NetLibIDN/Net-LibIDN-0.12-intel-2014b-Perl-5.20.0.eb @@ -9,7 +9,7 @@ description = """This module provides Perl bindings for GNU Libidn.""" toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://www.cpan.org/CPAN/authors/id/T/TH/THOR/'] +source_urls = ['http://cpan.metacpan.org/authors/id/T/TH/THOR/'] sources = [SOURCE_TAR_GZ] perl = 'Perl' -- GitLab From 1558419b2bc990fbbed6f32484c7009c479dfc6e Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Fri, 5 Sep 2014 10:57:01 +0200 Subject: [PATCH 0067/1217] Download link changed to cpan.metacpan.org --- .../d/DBD-mysql/DBD-mysql-intel-2014b-Perl-5.20.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-intel-2014b-Perl-5.20.0.eb index d6576e400b..05a96cbcf8 100644 --- a/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-intel-2014b-Perl-5.20.0.eb +++ b/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-intel-2014b-Perl-5.20.0.eb @@ -8,7 +8,7 @@ description = """Perl binding for MySQL""" toolchain = {'name': 'intel', 'version': '2014b'} -source_urls = ['http://www.cpan.org/CPAN/authors/id/C/CA/CAPTTOFU/'] +source_urls = ['http://cpan.metacpan.org/authors/id/C/CA/CAPTTOFU/'] sources = [SOURCE_TAR_GZ] perl = 'Perl' -- GitLab From 852f6cbd3d16b0193b8f455e33c75d86f7d89da4 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Fri, 5 Sep 2014 10:58:57 +0200 Subject: [PATCH 0068/1217] Download link changed to cpan.metacpan.org --- .../d/DBD-SQLite/DBD-SQLite-1.42-intel-2014b-Perl-5.20.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/d/DBD-SQLite/DBD-SQLite-1.42-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/d/DBD-SQLite/DBD-SQLite-1.42-intel-2014b-Perl-5.20.0.eb index 27c8c0f18e..318f3d639e 100644 --- a/easybuild/easyconfigs/d/DBD-SQLite/DBD-SQLite-1.42-intel-2014b-Perl-5.20.0.eb +++ b/easybuild/easyconfigs/d/DBD-SQLite/DBD-SQLite-1.42-intel-2014b-Perl-5.20.0.eb @@ -8,7 +8,7 @@ description = """Perl binding for SQLite""" toolchain = {'name': 'intel', 'version': '2014b'} -source_urls = ['http://www.cpan.org/CPAN/authors/id/I/IS/ISHIGAKI/'] +source_urls = ['http://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI/'] sources = [SOURCE_TAR_GZ] perl = 'Perl' -- GitLab From e5d53da8cf4cff4c72ba1445172390a6161a0e45 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Fri, 5 Sep 2014 14:25:51 +0200 Subject: [PATCH 0069/1217] 1 --- .../g/Graphviz/Graphviz-2.38.0-intel-2014b.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb diff --git a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb new file mode 100644 index 0000000000..44d9597229 --- /dev/null +++ b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb @@ -0,0 +1,26 @@ +name = 'Grapviz' +version = '2.38.0' + +homepage = 'http://www.example.com' +description = """TEMPLATE DESCRIPTION""" + +# toolchain name should be 'TEMPLATE' if this is a template, so EasyBuild knows and is willing to use it as a template +toolchain = {'name': 'TEMPLATE', 'version': 'TK_VERSION'} +toolchainopts = {} # toolchain options, e.g. opt, pic, usempi, optarch, ... + +# For sources line to work correctly with --try-software-version, you MUST employ %s OR use a construct like SOURCE_TAR_GZ +sources = ['%(name)s-%(version)s.tar.gz'] +source_urls = ['http://www.example.com'] + +patches = [] + +dependencies = [] + +# The sanity test MUST be tuned before going production and submitting your contribution to upstream git repositories +sanity_check_paths = { + 'files': [], + 'dirs': ["."] +} + +# You SHOULD change the following line; Kindly consult other easyconfigs for possible options +moduleclass = 'base' -- GitLab From 7056197e540cc66cfdf6cfdcb39f4922eb9aae84 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Tue, 9 Sep 2014 14:49:48 +0200 Subject: [PATCH 0070/1217] Graphviz2-intel2014b and perl binding with deps --- .../c/cairo/cairo-1.12.14-intel-2014b.eb | 24 +++++++ .../fontconfig-2.11.1-intel-2014b.eb | 17 +++++ .../f/freetype/freetype-2.5.3-intel-2014b.eb | 21 ++++++ .../g/GLib/GLib-2.40.0-intel-2014b.eb | 19 ++++++ .../g/GTS/GTS-0.7.6-intel-2014b.eb | 23 +++++++ .../Ghostscript-9.14-intel-2014b.eb | 42 ++++++++++++ .../Ghostscript-9.14_use_extzlib.patch | 47 ++++++++++++++ .../GraphViz2-2.29-intel-2014b-Perl-5.20.0.eb | 27 ++++++++ .../g/Graphviz/Graphviz-2.38.0-intel-2014b.eb | 64 ++++++++++++++----- .../g/Graphviz/Graphviz-2.38.0_icc_sfio.patch | 13 ++++ .../Graphviz-2.38.0_icc_vmalloc.patch | 14 ++++ .../g/gettext/gettext-0.19.2-intel-2014b.eb | 16 +++++ .../h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb | 23 +++++++ .../h/HarfBuzz/HarfBuzz-0.9.35_config.patch | 14 ++++ .../l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb | 29 +++++++++ .../l/libffi/libffi-3.1-intel-2014b.eb | 21 ++++++ .../p/PCRE/PCRE-8.35-intel-2014b.eb | 18 ++++++ .../p/Pango/Pango-1.36-intel-2014b.eb | 34 ++++++++++ .../p/pixman/pixman-0.32.6-intel-2014b.eb | 18 ++++++ .../easyconfigs/q/Qt/Qt-4.8.6-intel-2014b.eb | 19 ++++++ .../q/Qt/Qt-4.8.6_icc-qUnused.patch | 13 ++++ .../SWIG-3.0.2-intel-2014b-Python-2.7.8.eb | 23 +++++++ 22 files changed, 523 insertions(+), 16 deletions(-) create mode 100644 easybuild/easyconfigs/c/cairo/cairo-1.12.14-intel-2014b.eb create mode 100644 easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb create mode 100644 easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb create mode 100644 easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2014b.eb create mode 100644 easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2014b.eb create mode 100644 easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb create mode 100644 easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14_use_extzlib.patch create mode 100644 easybuild/easyconfigs/g/GraphViz2/GraphViz2-2.29-intel-2014b-Perl-5.20.0.eb create mode 100644 easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0_icc_sfio.patch create mode 100644 easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0_icc_vmalloc.patch create mode 100644 easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2014b.eb create mode 100644 easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb create mode 100644 easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35_config.patch create mode 100644 easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb create mode 100644 easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb create mode 100644 easybuild/easyconfigs/p/PCRE/PCRE-8.35-intel-2014b.eb create mode 100644 easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb create mode 100644 easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb create mode 100644 easybuild/easyconfigs/q/Qt/Qt-4.8.6-intel-2014b.eb create mode 100644 easybuild/easyconfigs/q/Qt/Qt-4.8.6_icc-qUnused.patch create mode 100644 easybuild/easyconfigs/s/SWIG/SWIG-3.0.2-intel-2014b-Python-2.7.8.eb diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-intel-2014b.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-intel-2014b.eb new file mode 100644 index 0000000000..6847e5c28e --- /dev/null +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-intel-2014b.eb @@ -0,0 +1,24 @@ +name = "cairo" +version = '1.12.14' + +homepage = 'http://cairographics.org' +description = """Cairo is a 2D graphics library with support for multiple output devices. +Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, +PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://cairographics.org/releases/'] +sources = [SOURCE_TAR_XZ] + +dependencies = [ + ('libpng', '1.6.12'), + ('freetype', '2.5.3'), + ('zlib', '1.2.8'), + ('pixman', '0.32.6'), + ('fontconfig', '2.11.1'), + ('expat', '2.1.0'), + ('bzip2', '1.0.6'), +] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb new file mode 100644 index 0000000000..4eca237e0b --- /dev/null +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb @@ -0,0 +1,17 @@ +name = "fontconfig" +version = '2.11.1' + +homepage = 'http://www.freedesktop.org/software/fontconfig' +description = """Fontconfig is a library designed to provide system-wide font configuration, customization and +application access.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://www.freedesktop.org/software/fontconfig/release/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [('expat', '2.1.0')] + +configopts = '--disable-docs ' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb new file mode 100644 index 0000000000..c0d1a23ea9 --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb @@ -0,0 +1,21 @@ +name = 'freetype' +version = '2.5.3' + +homepage = 'http://freetype.org' +description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and + portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display + servers, font conversion tools, text image generation tools, and many other products as well.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('libpng', '1.6.12')] + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2014b.eb b/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2014b.eb new file mode 100644 index 0000000000..6a2dd6f9f2 --- /dev/null +++ b/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2014b.eb @@ -0,0 +1,19 @@ +name = 'GLib' +version = '2.40.0' + +homepage = 'http://www.gtk.org/' +description = """GLib is one of the base libraries of the GTK+ project""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://ftp.gnome.org/pub/gnome/sources/glib/%(version_major_minor)s/'] +sources = ['glib-%(version)s.tar.xz'] + +dependencies = [ + ('libffi', '3.1'), + ('gettext', '0.19.2'), +] +builddependencies = [('Python', '2.7.8')] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2014b.eb b/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2014b.eb new file mode 100644 index 0000000000..c070d72dcd --- /dev/null +++ b/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2014b.eb @@ -0,0 +1,23 @@ +name = 'GTS' +version = '0.7.6' + +homepage = 'http://gts.sourceforge.net/' +description = """GTS stands for the GNU Triangulated Surface Library. + It is an Open Source Free Software Library intended to provide a set of useful + functions to deal with 3D surfaces meshed with interconnected triangles.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('GLib', '2.40.0'), +] + +sanity_check_paths = { + 'files': ['lib/libgts.so', 'bin/gts2oogl', 'bin/gtscheck'], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb new file mode 100644 index 0000000000..6ba7b8c745 --- /dev/null +++ b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb @@ -0,0 +1,42 @@ +name = 'Ghostscript' +version = '9.14' + +homepage = 'http://ghostscript.com' +description = """Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to + different targets. It used to be part of the cups printing stack, but is no longer used for that.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +source_urls = ["http://downloads.ghostscript.com/public/"] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('freetype', '2.5.3'), + ('fontconfig', '2.11.1'), + ('GLib', '2.40.0'), + ('libjpeg-turbo', '1.3.1'), + ('libpng', '1.6.12'), + ('expat', '2.1.0'), + ('cairo', '1.12.14'), + ('LibTIFF', '4.0.3'), + ('zlib', '1.2.8'), +] + +patches = ['Ghostscript-9.14_use_extzlib.patch'] + +# Use external libraries http://www.linuxfromscratch.org/blfs/view/svn/pst/gs.html +preconfigopts = "rm -rf expat freetype jpeg libpng zlib && " + +configopts = "--with-system-libtiff --enable-dynamic " + +buildopts = [' ', 'so'] + +installopts = [' ', 'soinstall'] + +sanity_check_paths = { + 'files': ['bin/gs', 'bin/ps2pdf', 'lib/libgs.so'], + 'dirs': ['include'] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14_use_extzlib.patch b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14_use_extzlib.patch new file mode 100644 index 0000000000..8f90c895eb --- /dev/null +++ b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14_use_extzlib.patch @@ -0,0 +1,47 @@ +# Use external ZLIB instead of Ghostscript provided ZLIB +# See http://www.linuxfromscratch.org/blfs/view/svn/pst/gs.html +# patch part #2: +# http://git.ghostscript.com/?p=ghostpdl.git;a=commitdiff;h=0ccf3294 +--- ghostscript-9.14/configure.orig 2014-03-26 13:53:47.000000000 +0100 ++++ ghostscript-9.14/configure 2014-09-09 10:03:12.742169571 +0200 +@@ -6254,7 +6254,7 @@ + $as_echo_n "checking for local zlib source... " >&6; } + # we must define ZLIBDIR regardless because png.mak does a -I$(ZLIBDIR) + # this seems a harmless default +-ZLIBDIR=src ++ZLIBDIR=$includedir + AUX_SHARED_ZLIB= + + if test -d $srcdir/zlib; then +--- ghostscript-9.14/configure.ac.orig 2014-03-26 13:53:48.000000000 +0100 ++++ ghostscript-9.14/configure.ac 2014-09-09 10:03:12.724170038 +0200 +@@ -854,7 +854,7 @@ + dnl zlib is needed for language level 3, and libpng + # we must define ZLIBDIR regardless because png.mak does a -I$(ZLIBDIR) + # this seems a harmless default +-ZLIBDIR=src ++ZLIBDIR=$includedir + AUX_SHARED_ZLIB= + + if test -d $srcdir/zlib; then +--- ghostscript-9.14/devices/devs.mak.orig 2014-03-26 13:53:48.000000000 +0100 ++++ ghostscript-9.14/devices/devs.mak 2014-09-09 11:33:30.513450444 +0200 +@@ -1596,9 +1596,16 @@ + + fpng_=$(DEVOBJ)gdevfpng.$(OBJ) $(DEVOBJ)gdevpccm.$(OBJ) + +-$(DEVOBJ)gdevfpng.$(OBJ) : $(DEVSRC)gdevfpng.c\ ++$(DEVOBJ)gdevfpng_0.$(OBJ) : $(DEVSRC)gdevfpng.c\ + $(gdevprn_h) $(gdevpccm_h) $(gscdefs_h) $(zlib_h) +- $(CC_) $(I_)$(DEVI_) $(II)$(PI_)$(_I) $(PCF_) $(GLF_) $(DEVO_)gdevfpng.$(OBJ) $(C_) $(DEVSRC)gdevfpng.c ++ $(CC_) $(I_)$(DEVI_) $(II)$(PI_)$(_I) $(PCF_) $(GLF_) $(DEVO_)gdevfpng_0.$(OBJ) $(C_) $(DEVSRC)gdevfpng.c ++ ++$(DEVOBJ)gdevfpng_1.$(OBJ) : $(DEVSRC)gdevfpng.c\ ++ $(gdevprn_h) $(gdevpccm_h) $(gscdefs_h) ++ $(CC_) $(I_)$(DEVI_) $(II)$(PI_)$(_I) $(PCF_) $(GLF_) $(DEVO_)gdevfpng_1.$(OBJ) $(C_) $(DEVSRC)gdevfpng.c ++ ++$(DEVOBJ)gdevfpng.$(OBJ) : $(DEVOBJ)gdevfpng_$(SHARE_ZLIB).$(OBJ) ++ $(CP_) $(DEVOBJ)gdevfpng_$(SHARE_ZLIB).$(OBJ) $(DEVOBJ)gdevfpng.$(OBJ) + + $(DD)fpng.dev : $(DEVS_MAK) $(fpng_) $(GLD)page.dev $(GDEV) + $(SETPDEV2) $(DD)fpng $(fpng_) diff --git a/easybuild/easyconfigs/g/GraphViz2/GraphViz2-2.29-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/g/GraphViz2/GraphViz2-2.29-intel-2014b-Perl-5.20.0.eb new file mode 100644 index 0000000000..c25b6f290e --- /dev/null +++ b/easybuild/easyconfigs/g/GraphViz2/GraphViz2-2.29-intel-2014b-Perl-5.20.0.eb @@ -0,0 +1,27 @@ +easyblock = 'PerlModule' + +name = 'GraphViz2' +version = '2.29' + +homepage = 'https://metacpan.org/pod/GraphViz2' +description = """This module provides a Perl interface to the amazing Graphviz, +an open source graph visualization tool from AT&T.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'] +sources = [SOURCE_TGZ] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ("Graphviz", "2.38.0"), +] + + +options = {'modulename': 'GraphViz2'} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb index 44d9597229..9e3cdeb315 100644 --- a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb +++ b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb @@ -1,26 +1,58 @@ -name = 'Grapviz' +name = 'Graphviz' version = '2.38.0' -homepage = 'http://www.example.com' -description = """TEMPLATE DESCRIPTION""" +homepage = 'http://www.graphviz.org/' +description = """Graphviz is open source graph visualization software. Graph visualization + is a way of representing structural information as diagrams of + abstract graphs and networks. It has important applications in networking, + bioinformatics, software engineering, database and web design, machine learning, + and in visual interfaces for other technical domains.""" -# toolchain name should be 'TEMPLATE' if this is a template, so EasyBuild knows and is willing to use it as a template -toolchain = {'name': 'TEMPLATE', 'version': 'TK_VERSION'} -toolchainopts = {} # toolchain options, e.g. opt, pic, usempi, optarch, ... +toolchain = {'name': 'intel', 'version': '2014b'} -# For sources line to work correctly with --try-software-version, you MUST employ %s OR use a construct like SOURCE_TAR_GZ -sources = ['%(name)s-%(version)s.tar.gz'] -source_urls = ['http://www.example.com'] +source_urls = ['http://www.graphviz.org/pub/graphviz/stable/SOURCES/'] +sources = [SOURCELOWER_TAR_GZ] -patches = [] +python = "Python" +pythonversion = '2.7.8' -dependencies = [] +dependencies = [ + ('cairo', '1.12.14'), + ('expat', '2.1.0'), + ('freetype', '2.5.3'), + ('fontconfig', '2.11.1'), + ('Ghostscript', '9.14'), + ('GLib', '2.40.0'), + ('GTS', '0.7.6'), + ('Java', '1.7.0_60', '', True), + ('libpng', '1.6.12'), + ('Pango', '1.36.7'), + ('Perl', '5.20.0'), + (python, pythonversion), + ('Qt', '4.8.6'), + ('SWIG', '3.0.2', '-%s-%s' % (python, pythonversion)), + ('Tcl', '8.6.2'), + ('zlib', '1.2.8'), +] + +builddependencies = [ + ('M4', '1.4.17'), +] + +patches = [ + 'Graphviz-2.38.0_icc_vmalloc.patch', + 'Graphviz-2.38.0_icc_sfio.patch', +] + +configopts = '--enable-guile=no --enable-lua=no --enable-ocaml=no ' +configopts += '--enable-r=no --enable-ruby=no ' + +prebuildopts = 'qmake -o cmd/gvedit/qMakefile cmd/gvedit/gvedit.pro && ' -# The sanity test MUST be tuned before going production and submitting your contribution to upstream git repositories sanity_check_paths = { - 'files': [], - 'dirs': ["."] + 'files': ['bin/cluster', 'bin/dot', 'bin/gvmap', + 'lib/libcdt.so', 'lib/libgvc.so', 'lib/libxdot.so'], + 'dirs': ['include'] } -# You SHOULD change the following line; Kindly consult other easyconfigs for possible options -moduleclass = 'base' +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0_icc_sfio.patch b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0_icc_sfio.patch new file mode 100644 index 0000000000..d5e5c02dbc --- /dev/null +++ b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0_icc_sfio.patch @@ -0,0 +1,13 @@ +#iffe determines wrongly _lib_qldexp and _lib_qfrexp +# both should be 0 +--- lib/sfio/features/sfio.orig 2014-04-13 22:40:25.000000000 +0200 ++++ lib/sfio/features/sfio 2014-09-08 13:49:38.410506603 +0200 +@@ -11,8 +11,6 @@ + + hdr string + hdr math +-lib qfrexp +-lib qldexp + + hdr unistd + hdr values diff --git a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0_icc_vmalloc.patch b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0_icc_vmalloc.patch new file mode 100644 index 0000000000..2ea488cc64 --- /dev/null +++ b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0_icc_vmalloc.patch @@ -0,0 +1,14 @@ +# iffe determines wrongly the vmalloc libraries. +# for icc _lib_mallopt, _lib_mallinfo, and _lib_mstats should be 0 in /FEATURE/vmalloc +# inspired by http://gnats.netbsd.org/43870 +--- lib/vmalloc/features/vmalloc.orig 2014-04-13 22:40:25.000000000 +0200 ++++ lib/vmalloc/features/vmalloc 2014-09-08 13:25:40.230441395 +0200 +@@ -13,9 +13,6 @@ + sys stat + typ ssize_t + hdr malloc +-lib mallopt +-lib mallinfo +-lib mstats + hdr alloca + hdr dlfcn diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2014b.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2014b.eb new file mode 100644 index 0000000000..b5dab16898 --- /dev/null +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2014b.eb @@ -0,0 +1,16 @@ +name = 'gettext' +version = '0.19.2' + +homepage = 'http://www.gnu.org/software/gettext/' +description = """GNU `gettext' is an important step for the GNU Translation Project, as it is an asset on which we may +build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools +and documentation""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = '--without-emacs' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb new file mode 100644 index 0000000000..347dc8042c --- /dev/null +++ b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb @@ -0,0 +1,23 @@ +name = 'HarfBuzz' +version = '0.9.35' + +homepage = 'http://www.harfbuzz.org/' +description = """HarfBuzz is an OpenType text shaping engine.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://www.freedesktop.org/software/harfbuzz/release/'] +sources = [SOURCELOWER_TAR_BZ2] + +dependencies = [ + ('cairo', '1.12.14'), +] + +patches = ['HarfBuzz-%(version)s_config.patch'] + +sanity_check_paths = { + 'files': ['lib/libharfbuzz.so', 'bin/hb-view'], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35_config.patch b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35_config.patch new file mode 100644 index 0000000000..492fdbe7e8 --- /dev/null +++ b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35_config.patch @@ -0,0 +1,14 @@ +# icu-config --ldflags-searchpath --ldflags-libsonly gives a two line answer +# the modification makes it one line +# By B. Hajgato September 5th 2014 +--- harfbuzz-0.9.35/configure.orig 2014-08-13 18:44:10.713184868 +0200 ++++ harfbuzz-0.9.35/configure 2014-09-05 16:33:00.317056171 +0200 +@@ -18478,7 +18478,7 @@ + # necessarily want, like debugging and optimization flags + # See man (1) icu-config for more info. + ICU_CFLAGS=`$ICU_CONFIG --cppflags` +- ICU_LIBS=`$ICU_CONFIG --ldflags-searchpath --ldflags-libsonly` ++ ICU_LIBS=`$ICU_CONFIG --ldflags-searchpath --ldflags-libsonly | sed ':a;N;$!ba;s/\n/ /g'` + + + { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb new file mode 100644 index 0000000000..cb623e327f --- /dev/null +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb @@ -0,0 +1,29 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +name = 'LibTIFF' +version = '4.0.3' + +homepage = 'http://www.remotesensing.org/libtiff/' +description = "tiff: Library and tools for reading and writing TIFF data files" + +source_urls = ['ftp://ftp.remotesensing.org/pub/libtiff/'] +sources = ['tiff-%(version)s.tar.gz'] + +toolchain = {'name': 'intel', 'version': '2014b'} + +sanity_check_paths = { + 'files': ['bin/tiffinfo'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb new file mode 100644 index 0000000000..e0d78b7d80 --- /dev/null +++ b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb @@ -0,0 +1,21 @@ +name = 'libffi' +version = '3.1' + +homepage = 'http://sourceware.org/libffi/' +description = """The libffi library provides a portable, high level programming interface to various calling +conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [ + 'ftp://sourceware.org/pub/libffi/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', +] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['lib/libffi.%s' % SHLIB_EXT, 'lib/libffi.a'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.35-intel-2014b.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.35-intel-2014b.eb new file mode 100644 index 0000000000..919d282faa --- /dev/null +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.35-intel-2014b.eb @@ -0,0 +1,18 @@ +name = 'PCRE' +version = '8.35' + +homepage = 'http://www.pcre.org/' +description = """ + The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax + and semantics as Perl 5. +""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +configopts = "--with-pic --disable-cpp" + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb b/easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb new file mode 100644 index 0000000000..35aca8adaa --- /dev/null +++ b/easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb @@ -0,0 +1,34 @@ +name = 'Pango' +version = '1.36.7' + +homepage = 'http://www.pango.org/' +description = """Pango is a library for laying out and rendering of text, with an emphasis + on internationalization. Pango can be used anywhere that text layout + is needed, though most of the work on Pango so far has been done in + the context of the GTK+ widget toolkit. Pango forms the core of text + and font handling for GTK+-2.x.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://ftp.gnome.org/pub/GNOME/sources/pango/%(version_major_minor)s/'] +sources = [SOURCELOWER_TAR_XZ] + +dependencies = [ + ('cairo', '1.12.14'), + ('fontconfig', '2.11.1'), + ('freetype', '2.5.3'), + ('GLib', '2.40.0'), + ('HarfBuzz', '0.9.35'), +] + +builddependencies = [ + ('M4', '1.4.17'), +] + +sanity_check_paths = { + 'files': ['bin/pango-view', 'lib/libpango-1.0.so', 'lib/libpangocairo-1.0.so', + 'lib/libpangoft2-1.0.so', 'lib/libpangoxft-1.0.so'], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb b/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb new file mode 100644 index 0000000000..681e7f4094 --- /dev/null +++ b/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb @@ -0,0 +1,18 @@ +name = "pixman" +version = '0.32.6' + +homepage = 'http://www.pixman.org/' +description = """Pixman is a low-level software library for pixel manipulation, providing features such as image +compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://cairographics.org/releases/'] +sources = [SOURCE_TAR_GZ] + +sanity_check_paths = { + 'files': ['lib/libpixman-1.so'], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.6-intel-2014b.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.6-intel-2014b.eb new file mode 100644 index 0000000000..1c0c56d935 --- /dev/null +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.6-intel-2014b.eb @@ -0,0 +1,19 @@ +name = 'Qt' +version = '4.8.6' + +homepage = 'http://qt-project.org/' +description = "Qt is a comprehensive cross-platform C++ application framework." + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = [ + 'http://origin.releases.qt-project.org/qt4/source/', + 'http://master.qt-project.org/archive/qt/%(version_major_minor)s/%(version)s/' +] +sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] + +patches = ['Qt-4.8.6_icc-qUnused.patch'] + +dependencies = [('GLib', '2.40.0')] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.6_icc-qUnused.patch b/easybuild/easyconfigs/q/Qt/Qt-4.8.6_icc-qUnused.patch new file mode 100644 index 0000000000..f022691e69 --- /dev/null +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.6_icc-qUnused.patch @@ -0,0 +1,13 @@ +see https://qt.gitorious.net/qt/qtbase/commit/d3951a5b0f4fe9731d1512668b43f51bd98bd84e +and http://lists.qt-project.org/pipermail/interest/2013-September/008591.html +--- src/corelib/global/qglobal.h.orig 2014-04-10 20:37:11.000000000 +0200 ++++ src/corelib/global/qglobal.h 2014-09-08 09:39:10.533187070 +0200 +@@ -1721,7 +1721,7 @@ + Avoid "unused parameter" warnings + */ + +-#if defined(Q_CC_INTEL) && !defined(Q_OS_WIN) || defined(Q_CC_RVCT) ++#if defined(Q_CC_RVCT) + template + inline void qUnused(T &x) { (void)x; } + # define Q_UNUSED(x) qUnused(x); diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-3.0.2-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.2-intel-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000..7ad794f78a --- /dev/null +++ b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.2-intel-2014b-Python-2.7.8.eb @@ -0,0 +1,23 @@ +name = 'SWIG' +version = '3.0.2' + +homepage = 'http://www.swig.org/' +description = """SWIG is a software development tool that connects programs written in C and C++ with + a variety of high-level programming languages.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +python = "Python" +pythonversion = '2.7.8' +versionsuffix = '-%s-%s' % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('PCRE', '8.35'), + ] + +moduleclass = 'devel' -- GitLab From 0ff70921de028d04657dea72ecb5e5d70d4f05f2 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Tue, 9 Sep 2014 16:44:44 +0200 Subject: [PATCH 0071/1217] version upgrade --- .../GraphViz2-2.33-intel-2014b-Perl-5.20.0.eb | 27 +++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/g/GraphViz2/GraphViz2-2.33-intel-2014b-Perl-5.20.0.eb diff --git a/easybuild/easyconfigs/g/GraphViz2/GraphViz2-2.33-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/g/GraphViz2/GraphViz2-2.33-intel-2014b-Perl-5.20.0.eb new file mode 100644 index 0000000000..0165dca509 --- /dev/null +++ b/easybuild/easyconfigs/g/GraphViz2/GraphViz2-2.33-intel-2014b-Perl-5.20.0.eb @@ -0,0 +1,27 @@ +easyblock = 'PerlModule' + +name = 'GraphViz2' +version = '2.33' + +homepage = 'https://metacpan.org/pod/GraphViz2' +description = """This module provides a Perl interface to the amazing Graphviz, +an open source graph visualization tool from AT&T.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'] +sources = [SOURCE_TGZ] + +perl = 'Perl' +perlver = '5.20.0' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), + ("Graphviz", "2.38.0"), +] + + +options = {'modulename': 'GraphViz2'} + +moduleclass = 'vis' -- GitLab From f6bcf8b557974a6513ea91beb7a3388b3b162c28 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Tue, 9 Sep 2014 16:46:08 +0200 Subject: [PATCH 0072/1217] Version upgrade --- .../GraphViz2-2.29-intel-2014b-Perl-5.20.0.eb | 27 ------------------- 1 file changed, 27 deletions(-) delete mode 100644 easybuild/easyconfigs/g/GraphViz2/GraphViz2-2.29-intel-2014b-Perl-5.20.0.eb diff --git a/easybuild/easyconfigs/g/GraphViz2/GraphViz2-2.29-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/g/GraphViz2/GraphViz2-2.29-intel-2014b-Perl-5.20.0.eb deleted file mode 100644 index c25b6f290e..0000000000 --- a/easybuild/easyconfigs/g/GraphViz2/GraphViz2-2.29-intel-2014b-Perl-5.20.0.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'PerlModule' - -name = 'GraphViz2' -version = '2.29' - -homepage = 'https://metacpan.org/pod/GraphViz2' -description = """This module provides a Perl interface to the amazing Graphviz, -an open source graph visualization tool from AT&T.""" - -toolchain = {'name': 'intel', 'version': '2014b'} - -source_urls = ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'] -sources = [SOURCE_TGZ] - -perl = 'Perl' -perlver = '5.20.0' -versionsuffix = '-%s-%s' % (perl, perlver) - -dependencies = [ - (perl, perlver), - ("Graphviz", "2.38.0"), -] - - -options = {'modulename': 'GraphViz2'} - -moduleclass = 'vis' -- GitLab From a6956c85cd1398e75ad7db315522563d0285075c Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 11 Sep 2014 09:17:46 +0200 Subject: [PATCH 0073/1217] Final touches and some more perl modules --- .../p/Perl/Perl-5.20.0-ictce-5.5.0.eb | 77 ++++++++++++++++++- .../p/Perl/Perl-5.20.0-intel-2014b.eb | 77 ++++++++++++++++++- .../p/Perl/XML-Bare-0.53_icc.patch | 13 ++++ 3 files changed, 163 insertions(+), 4 deletions(-) create mode 100644 easybuild/easyconfigs/p/Perl/XML-Bare-0.53_icc.patch diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0.eb index 6361dfa229..1d9af49c7e 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0.eb @@ -691,7 +691,6 @@ exts_list = [ 'patches': ['TermReadKey-2.32.patch'], }), ('Moo', '1.005000', { - 'source_tmpl': 'Moo-1.005000.tar.gz', 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], }), ('strictures', '1.005004', { @@ -739,9 +738,83 @@ exts_list = [ 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], }), ('Want', '0.23', { - 'source_tmpl': 'Want-0.23.tar.gz', 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RO/ROBIN/'], }), + ('File::Spec', '3.47', { + 'source_tmpl': 'PathTools-3.47.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SM/SMUELLER/'], + }), + ('Log::Handler', '0.82', { + 'source_tmpl': 'Log-Handler-0.82.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BL/BLOONIX/'], + }), + ('File::HomeDir', '1.00', { + 'source_tmpl': 'File-HomeDir-1.00.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Data::Dumper::Concise', '2.022', { + 'source_tmpl': 'Data-Dumper-Concise-2.022.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW/'], + }), + ('DBIx::Admin::TableInfo', '2.11', { + 'source_tmpl': 'DBIx-Admin-TableInfo-2.11.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('Algorithm::Dependency', '1.110', { + 'source_tmpl': 'Algorithm-Dependency-1.110.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Carp', '1.3301', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/'], + }), + ('Exporter', '5.70', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'], + }), + ('HTML::Parser', '3.71', { + 'source_tmpl': 'HTML-Parser-3.71.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Scalar::Util', '1.39', { + 'source_tmpl': 'Scalar-List-Utils-1.39.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PEVANS/'], + }), + ('HTML::Tree', '5.03', { + 'source_tmpl': 'HTML-Tree-5.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM/'], + }), + ('HTTP::Tiny', '0.043', { + 'source_tmpl': 'HTTP-Tiny-0.043.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], + }), + ('XML::Bare', '0.53', { + 'source_tmpl': 'XML-Bare-0.53.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CO/CODECHILD/'], + 'patches': ['XML-Bare-0.53_icc.patch'], + }), + ('Text::Balanced', '2.02', { + 'source_tmpl': 'Text-Balanced-2.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Parse::RecDescent', '1.967009', { + 'source_tmpl': 'Parse-RecDescent-1.967009.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JT/JTBRAUN/'], + }), + ('HTML::Entities::Interpolate', '1.05', { + 'source_tmpl': 'HTML-Entities-Interpolate-1.05.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('XML::Tiny', '2.06', { + 'source_tmpl': 'XML-Tiny-2.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DC/DCANTRELL/'], + }), + ('Tie::Function', '0.02', { + 'source_tmpl': 'Tie-Function-0.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAVIDNICO/handy_tied_functions/'], + }), + ('Lingua::EN::PluralToSingular', '0.13', { + 'source_tmpl': 'Lingua-EN-PluralToSingular-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BK/BKB/'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.0-intel-2014b.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-intel-2014b.eb index ddc00cca24..3b90d83610 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.20.0-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-intel-2014b.eb @@ -691,7 +691,6 @@ exts_list = [ 'patches': ['TermReadKey-2.32.patch'], }), ('Moo', '1.005000', { - 'source_tmpl': 'Moo-1.005000.tar.gz', 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], }), ('strictures', '1.005004', { @@ -739,9 +738,83 @@ exts_list = [ 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], }), ('Want', '0.23', { - 'source_tmpl': 'Want-0.23.tar.gz', 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RO/ROBIN/'], }), + ('File::Spec', '3.47', { + 'source_tmpl': 'PathTools-3.47.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SM/SMUELLER/'], + }), + ('Log::Handler', '0.82', { + 'source_tmpl': 'Log-Handler-0.82.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BL/BLOONIX/'], + }), + ('File::HomeDir', '1.00', { + 'source_tmpl': 'File-HomeDir-1.00.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Data::Dumper::Concise', '2.022', { + 'source_tmpl': 'Data-Dumper-Concise-2.022.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW/'], + }), + ('DBIx::Admin::TableInfo', '2.11', { + 'source_tmpl': 'DBIx-Admin-TableInfo-2.11.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('Algorithm::Dependency', '1.110', { + 'source_tmpl': 'Algorithm-Dependency-1.110.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Carp', '1.3301', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM/'], + }), + ('Exporter', '5.70', { + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TO/TODDR/'], + }), + ('HTML::Parser', '3.71', { + 'source_tmpl': 'HTML-Parser-3.71.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Scalar::Util', '1.39', { + 'source_tmpl': 'Scalar-List-Utils-1.39.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PEVANS/'], + }), + ('HTML::Tree', '5.03', { + 'source_tmpl': 'HTML-Tree-5.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM/'], + }), + ('HTTP::Tiny', '0.043', { + 'source_tmpl': 'HTTP-Tiny-0.043.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], + }), + ('XML::Bare', '0.53', { + 'source_tmpl': 'XML-Bare-0.53.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CO/CODECHILD/'], + 'patches': ['XML-Bare-0.53_icc.patch'], + }), + ('Text::Balanced', '2.02', { + 'source_tmpl': 'Text-Balanced-2.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK/'], + }), + ('Parse::RecDescent', '1.967009', { + 'source_tmpl': 'Parse-RecDescent-1.967009.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JT/JTBRAUN/'], + }), + ('HTML::Entities::Interpolate', '1.05', { + 'source_tmpl': 'HTML-Entities-Interpolate-1.05.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE/'], + }), + ('XML::Tiny', '2.06', { + 'source_tmpl': 'XML-Tiny-2.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DC/DCANTRELL/'], + }), + ('Tie::Function', '0.02', { + 'source_tmpl': 'Tie-Function-0.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAVIDNICO/handy_tied_functions/'], + }), + ('Lingua::EN::PluralToSingular', '0.13', { + 'source_tmpl': 'Lingua-EN-PluralToSingular-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BK/BKB/'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/XML-Bare-0.53_icc.patch b/easybuild/easyconfigs/p/Perl/XML-Bare-0.53_icc.patch new file mode 100644 index 0000000000..2a350bcb0b --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/XML-Bare-0.53_icc.patch @@ -0,0 +1,13 @@ +#Use icc instead of gcc +#September 11 2014 by B. Hajgato +--- XML-Bare-0.53/Makefile.PL.orig 2013-04-30 04:00:00.000000000 +0200 ++++ XML-Bare-0.53/Makefile.PL 2014-09-11 08:17:22.437966044 +0200 +@@ -94,7 +94,7 @@ + my $div = (substr($ENV{'PATH'},0,1) eq '/') ? ':' : ';'; + my @path = split($div,$ENV{'PATH'}); + foreach my $dir ( @path ) { +- return 'gcc' if( -e "$dir/gcc" || -e "$dir/gcc.exe" ); # prefer gcc ++ return 'icc' if( -e "$dir/icc" || -e "$dir/icc.exe" ); # prefer icc + return 'cc' if( -e "$dir/cc" || -e "$dir/cc.exe" ); + } + return 0; -- GitLab From afd4e184f17c846751ba6825d9c40937e80c489b Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 11 Sep 2014 13:49:31 +0200 Subject: [PATCH 0074/1217] Unneccessary surce_tmpls deleted --- easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0.eb | 3 --- easybuild/easyconfigs/p/Perl/Perl-5.20.0-intel-2014b.eb | 3 --- 2 files changed, 6 deletions(-) diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0.eb index 1d9af49c7e..deb5d31ae7 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0.eb @@ -336,7 +336,6 @@ exts_list = [ 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], }), ('Clone', '0.37', { - 'source_tmpl': 'Clone-0.37.tar.gz', 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GARU'], }), ('Config::General', '2.56', { @@ -360,7 +359,6 @@ exts_list = [ 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AS/ASPINELLI'], }), ('Readonly', '1.04', { - 'source_tmpl': 'Readonly-1.04.tar.gz', 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SA/SANKO/'], }), ('Regexp::Common', '2013031301', { @@ -694,7 +692,6 @@ exts_list = [ 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], }), ('strictures', '1.005004', { - 'source_tmpl': 'strictures-1.005004.tar.gz', 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], }), ('File::Find::Rule::Perl', '1.13', { diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.0-intel-2014b.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-intel-2014b.eb index 3b90d83610..197f8c762a 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.20.0-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-intel-2014b.eb @@ -336,7 +336,6 @@ exts_list = [ 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM/'], }), ('Clone', '0.37', { - 'source_tmpl': 'Clone-0.37.tar.gz', 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GARU'], }), ('Config::General', '2.56', { @@ -360,7 +359,6 @@ exts_list = [ 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AS/ASPINELLI'], }), ('Readonly', '1.04', { - 'source_tmpl': 'Readonly-1.04.tar.gz', 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SA/SANKO/'], }), ('Regexp::Common', '2013031301', { @@ -694,7 +692,6 @@ exts_list = [ 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], }), ('strictures', '1.005004', { - 'source_tmpl': 'strictures-1.005004.tar.gz', 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG/'], }), ('File::Find::Rule::Perl', '1.13', { -- GitLab From 0f214ac33a2af13154282fc984009c15bbada1b6 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bal=C3=A1zs=20Hajgat=C3=B3?= Date: Fri, 12 Sep 2014 10:10:43 +0200 Subject: [PATCH 0075/1217] Update XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb --- .../XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb | 7 +------ 1 file changed, 1 insertion(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb index 5898d34cc1..2db4eafe52 100644 --- a/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb +++ b/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb @@ -16,13 +16,8 @@ perl = 'Perl' perlver = '5.20.0' versionsuffix = '-%s-%s' % (perl, perlver) -dependencies = [ - (perl, perlver), - ('XML-Parser', '2.41', versionsuffix), -] +dependencies = [(perl, perlver), ('XML-Parser', '2.41', versionsuffix)] options = {'modulename': 'XML::Dumper'} moduleclass = 'data' - - -- GitLab From 51872e33dd0fc09a916a9f6fe2aa5e6d94a2424b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bal=C3=A1zs=20Hajgat=C3=B3?= Date: Fri, 12 Sep 2014 10:11:05 +0200 Subject: [PATCH 0076/1217] Update XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb --- .../XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb | 7 +------ 1 file changed, 1 insertion(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb index 189570ff1a..8c386ffb9d 100644 --- a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb @@ -14,13 +14,8 @@ perl = 'Perl' perlver = '5.20.0' versionsuffix = '-%s-%s' % (perl, perlver) -dependencies = [ - (perl, perlver), - ('expat', '2.1.0'), -] +dependencies = [(perl, perlver),('expat', '2.1.0')] options = {'modulename': 'XML::Parser'} moduleclass = 'data' - - -- GitLab From 0f5853bca95098239a4eca6f014ad7d414e3b240 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bal=C3=A1zs=20Hajgat=C3=B3?= Date: Fri, 12 Sep 2014 10:11:32 +0200 Subject: [PATCH 0077/1217] Update XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb --- .../x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb | 7 +------ 1 file changed, 1 insertion(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb index f0ac5137d0..7157ef0483 100644 --- a/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb +++ b/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb @@ -14,13 +14,8 @@ perl = 'Perl' perlver = '5.20.0' versionsuffix = '-%s-%s' % (perl, perlver) -dependencies = [ - (perl, perlver), - ('XML-Parser', '2.41', versionsuffix), -] +dependencies = [(perl, perlver), ('XML-Parser', '2.41', versionsuffix)] options = {'modulename': 'XML::Twig'} moduleclass = 'data' - - -- GitLab From 4c3df0e1fddae4b68bc253c0510b367bfe6cfb57 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Wed, 17 Sep 2014 16:53:15 +0200 Subject: [PATCH 0078/1217] OpenCV and its dependencies --- .../a/ant/ant-1.9.3-Java-1.7.0_60.eb | 26 +++++++ .../f/ffmpeg/ffmpeg-2.4-intel-2014b.eb | 26 +++++++ .../j/JUnit/JUnit-4.11-Java-1.7.0_60.eb | 25 +++++++ .../j/JasPer/JasPer-1.900.1-intel-2014b.eb | 19 +++++ .../o/OpenCV/OpenCV-2.4.9-intel-2014b.eb | 74 +++++++++++++++++++ .../o/OpenCV/OpenCV-2.4.9_with_IPP.patch | 14 ++++ 6 files changed, 184 insertions(+) create mode 100644 easybuild/easyconfigs/a/ant/ant-1.9.3-Java-1.7.0_60.eb create mode 100644 easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014b.eb create mode 100644 easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_60.eb create mode 100644 easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2014b.eb create mode 100644 easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb create mode 100644 easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9_with_IPP.patch diff --git a/easybuild/easyconfigs/a/ant/ant-1.9.3-Java-1.7.0_60.eb b/easybuild/easyconfigs/a/ant/ant-1.9.3-Java-1.7.0_60.eb new file mode 100644 index 0000000000..a757cbe9a0 --- /dev/null +++ b/easybuild/easyconfigs/a/ant/ant-1.9.3-Java-1.7.0_60.eb @@ -0,0 +1,26 @@ +name = 'ant' +version = '1.9.3' + +homepage = 'http://ant.apache.org/' +description = """Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files + as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['apache-%s-%s-src.tar.gz' % (name, version)] +source_urls = ['http://archive.apache.org/dist/%s/source/' % name] + +java = 'Java' +javaver = '1.7.0_60' +versionsuffix = '-%s-%s' % (java, javaver) + +dependencies = [(java, javaver)] + +builddependencies = [('JUnit', '4.11', versionsuffix)] + +sanity_check_paths = { + 'files': ['bin/ant', 'lib/ant.jar', 'lib/ant.jar'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014b.eb b/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014b.eb new file mode 100644 index 0000000000..d735964164 --- /dev/null +++ b/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014b.eb @@ -0,0 +1,26 @@ +name = 'ffmpeg' +version = '2.4' + +homepage = 'https://www.ffmpeg.org/' +description = """A complete, cross-platform solution to record, convert and stream audio and video.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_BZ2] +source_urls = ['http://ffmpeg.org/releases/'] + +configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX"' + +dependencies = [ + ('NASM', '2.11.05'), + ('zlib', '1.2.8'), +] + +sanity_check_paths = { + 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server'] ] + + ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc', + 'swresample', 'swscale', 'avutil'] for y in ['so', 'a']], + 'dirs': ['include'] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_60.eb b/easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_60.eb new file mode 100644 index 0000000000..19940e6a0f --- /dev/null +++ b/easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_60.eb @@ -0,0 +1,25 @@ +easyblock = 'JAR' + +name = 'JUnit' +version = '4.11' + +homepage = 'http://sourceforge.net/projects/junit' +description = """A programmer-oriented testing framework for Java.""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['%s-%s.jar' % (name.lower(), version)] +source_urls = ['http://search.maven.org/remotecontent?filepath=junit/junit/%s/' % version] + +java = 'Java' +javaver = '1.7.0_60' +versionsuffix = '-%s-%s' % (java, javaver) + +dependencies = [(java, javaver)] + +sanity_check_paths = { + 'files': sources, + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2014b.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2014b.eb new file mode 100644 index 0000000000..dae0c952ca --- /dev/null +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2014b.eb @@ -0,0 +1,19 @@ +name = 'JasPer' +version = '1.900.1' + +homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' +description = """The JasPer Project is an open-source initiative to provide a free + software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_ZIP] +source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] + +sanity_check_paths = { + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb new file mode 100644 index 0000000000..f3a4ea7766 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb @@ -0,0 +1,74 @@ +easyblock = 'CMakeMake' + +name = 'OpenCV' +version = '2.4.9' + +homepage = 'http://opencv.org/' +description = """OpenCV (Open Source Computer Vision Library) is an open source computer vision + and machine learning software library. OpenCV was built to provide + a common infrastructure for computer vision applications and to accelerate + the use of machine perception in the commercial products.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'opt': True, 'optarch': True} + +sources = [SOURCELOWER_ZIP] +source_urls = [('http://sourceforge.net/projects/opencvlibrary/files/opencv-unix/%s' % version, 'download')] + +patches = ['OpenCV-%s_with_IPP.patch' % version] + +osdependencies = ['gtk2-devel'] + +builddependencies = [ + ('CMake', '3.0.0'), +] + +python = 'Python' +pythonver = '2.7.8' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +java = 'Java' +javaver = '1.7.0_60' + +dependencies = [ + (python, pythonver), + ('zlib', '1.2.8'), + ('ffmpeg', '2.4'), + ('libjpeg-turbo', '1.3.1'), + ('libpng', '1.6.12'), + ('LibTIFF', '4.0.3'), + ('JasPer', '1.900.1'), + (java, javaver ,'', True), + ('ant', '1.9.3', '-%s-%s' % (java,javaver), True), + ('GLib', '2.40.0') +] + +preconfigopts = 'export IPPROOT=$EBROOTICC/ipp && ' + +configopts = '-DCMAKE_BUILD_TYPE=RELEASE ' +configopts += '-DZLIB_LIBRARY=$EBROOTZLIB/lib/libz.so ' +configopts += '-DZLIB_INCLUDE_DIR=$EBROOTZLIB/include ' +configopts += '-DTIFF_LIBRARY=$EBROOTLIBTIFF/lib/libtiff.so ' +configopts += '-DTIFF_INCLUDE_DIR=$EBROOTLIBTIFF/include ' +configopts += '-DPNG_LIBRARY=$EBROOTLIBPNG/lib/libpng.so ' +configopts += '-DPNG_INCLUDE_DIR=$EBROOTLIBPNG/include ' +configopts += '-DPNG_PNG_INCLUDE_DIR=$EBROOTLIBPNG/include ' +configopts += '-DJPEG_LIBRARY=$EBROOTLIBJPEGMINTURBO/lib/libjpeg.so ' +configopts += '-DJPEG_INCLUDE_DIR=$EBROOTLIBJPEGMINTURBO/include ' +configopts += '-DJASPER_LIBRARY=$EBROOTJASPER/lib/libjasper.a ' +configopts += '-DJASPER_INCLUDE_DIR=$EBROOTJASPER/include ' +configopts += '-DWITH_IPP=ON ' +#configopts += '-DIPPROOT=$EBROOTICC/ipp ' +#configopts += '-DIPP_H_PATH=$EBROOTICC/ipp/include ' + +sanity_check_paths = { + 'files': ['lib/libopencv_core.so'] + + [ 'bin/opencv_%s' % x for x in ['haartraining', 'createsamples', 'performance', 'traincascade'] ], + 'dirs': ['include'] +} + +modextrapaths = { + 'PYTHONPATH': 'lib/python%s/site-packages' % pythonshortver, + 'CLASSPATH': 'share/OpenCV/java', +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9_with_IPP.patch b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9_with_IPP.patch new file mode 100644 index 0000000000..5eb1a642b2 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9_with_IPP.patch @@ -0,0 +1,14 @@ +#By defualt OpenCV looks IPP lib dir in $IPPROOT../lib +# In our setup it is at $IPPROOT/lib +# By B. Hajgato 17th September 2014 +--- cmake/OpenCVFindIPP.cmake.orig 2014-09-17 15:40:55.877279310 +0200 ++++ cmake/OpenCVFindIPP.cmake 2014-09-17 15:52:31.151177525 +0200 +@@ -229,7 +229,7 @@ + endif() + + if (UNIX) +- get_filename_component(INTEL_COMPILER_LIBRARY_DIR ${IPP_ROOT_DIR}/../lib REALPATH) ++ get_filename_component(INTEL_COMPILER_LIBRARY_DIR ${IPP_ROOT_DIR}/lib REALPATH) + if (IPP_X64) + if(NOT EXISTS ${INTEL_COMPILER_LIBRARY_DIR}/intel64) + message(SEND_ERROR "Intel compiler EM64T libraries not found") -- GitLab From 7284419177a3610a86a38783f89e161ded3280fe Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 18 Sep 2014 08:52:34 +0200 Subject: [PATCH 0079/1217] Polishing a bit --- easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb | 3 --- easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9_with_IPP.patch | 2 +- 2 files changed, 1 insertion(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb index f3a4ea7766..c1fcff8987 100644 --- a/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb @@ -51,14 +51,11 @@ configopts += '-DTIFF_LIBRARY=$EBROOTLIBTIFF/lib/libtiff.so ' configopts += '-DTIFF_INCLUDE_DIR=$EBROOTLIBTIFF/include ' configopts += '-DPNG_LIBRARY=$EBROOTLIBPNG/lib/libpng.so ' configopts += '-DPNG_INCLUDE_DIR=$EBROOTLIBPNG/include ' -configopts += '-DPNG_PNG_INCLUDE_DIR=$EBROOTLIBPNG/include ' configopts += '-DJPEG_LIBRARY=$EBROOTLIBJPEGMINTURBO/lib/libjpeg.so ' configopts += '-DJPEG_INCLUDE_DIR=$EBROOTLIBJPEGMINTURBO/include ' configopts += '-DJASPER_LIBRARY=$EBROOTJASPER/lib/libjasper.a ' configopts += '-DJASPER_INCLUDE_DIR=$EBROOTJASPER/include ' configopts += '-DWITH_IPP=ON ' -#configopts += '-DIPPROOT=$EBROOTICC/ipp ' -#configopts += '-DIPP_H_PATH=$EBROOTICC/ipp/include ' sanity_check_paths = { 'files': ['lib/libopencv_core.so'] + diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9_with_IPP.patch b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9_with_IPP.patch index 5eb1a642b2..bc7d809672 100644 --- a/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9_with_IPP.patch +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9_with_IPP.patch @@ -1,6 +1,6 @@ #By defualt OpenCV looks IPP lib dir in $IPPROOT../lib # In our setup it is at $IPPROOT/lib -# By B. Hajgato 17th September 2014 +# By B. Hajgato September 17th 2014 --- cmake/OpenCVFindIPP.cmake.orig 2014-09-17 15:40:55.877279310 +0200 +++ cmake/OpenCVFindIPP.cmake 2014-09-17 15:52:31.151177525 +0200 @@ -229,7 +229,7 @@ -- GitLab From 442355e706fbcba706bd3b515b6ba14c6b0cf9a3 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 18 Sep 2014 14:46:06 +0200 Subject: [PATCH 0080/1217] Extra Envs added for the module --- .../easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb index 9e3cdeb315..f8754abe7f 100644 --- a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb +++ b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb @@ -55,4 +55,11 @@ sanity_check_paths = { 'dirs': ['include'] } +modextrapaths = { + 'PYTHONPATH': 'lib/graphviz/python', + 'CLASSPATH': 'lib/graphviz/java/org/graphviz', + 'LD_LIBRARY_PATH': 'lib/graphviz/java', + 'TCLLIBPATH': 'lib/graphviz/tcl', +} + moduleclass = 'vis' -- GitLab From 517944c07c325eb9beb1ed4dcb0e37358acbccf5 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bal=C3=A1zs=20Hajgat=C3=B3?= Date: Thu, 9 Oct 2014 18:23:18 +0200 Subject: [PATCH 0081/1217] Update Perl-5.20.0-ictce-5.5.0.eb --- easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0.eb index deb5d31ae7..553ffacec6 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.0-ictce-5.5.0.eb @@ -359,7 +359,7 @@ exts_list = [ 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AS/ASPINELLI'], }), ('Readonly', '1.04', { - 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SA/SANKO/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SA/SANKO'], }), ('Regexp::Common', '2013031301', { 'source_tmpl': 'Regexp-Common-2013031301.tar.gz', -- GitLab From f9e11c7393bfbf54d69dceae4a80d7987a71268c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 10 Oct 2014 17:56:05 +0200 Subject: [PATCH 0082/1217] add easyconfig for WIEN2k v14.1 with intel/2014b --- .../w/WIEN2k/WIEN2k-14.1-intel-2014b.eb | 46 +++++++++++++++++++ 1 file changed, 46 insertions(+) create mode 100644 easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1-intel-2014b.eb diff --git a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1-intel-2014b.eb b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1-intel-2014b.eb new file mode 100644 index 0000000000..9a8f71d9ca --- /dev/null +++ b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1-intel-2014b.eb @@ -0,0 +1,46 @@ +name = 'WIEN2k' +version = '14.1' + +homepage = 'http://www.wien2k.at/' +description = """The program package WIEN2k allows to perform electronic structure calculations of solids +using density functional theory (DFT). It is based on the full-potential (linearized) augmented plane-wave +((L)APW) + local orbitals (lo) method, one among the most accurate schemes for band structure calculations. +WIEN2k is an all-electron scheme including relativistic effects and has many features.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = ['%(name)s_%(version)s.tar'] +checksums = ['b926596ea86d505120af8829cec4814e'] + +patches = [ + 'WIEN2k-%(version)s_lapw5-main-accuracy-fix.patch', + 'WIEN2k-%(version)s_fix-tetra.patch', + 'WIEN2k-%(version)s_fix-x_lapw.patch', +] + +dependencies = [('FFTW', '3.3.4')] + +osdependencies = ['glib-devel'] # required for libpthread.a + +remote = 'pbsssh' +wien_mpirun = 'mpirun -np _NP_ -machinefile _HOSTS_ _EXEC_' +use_remote = True +mpi_remote = False +wien_granularity = True +taskset = 'no' + +tests = [ + # test case 1: NaCl + ('NaCl', '-b', '-i 3', [r'^:DIS.*0.1227', r'^:ENE.*-1248.1427']), + # test case 2: TiO2 + ('TiO2', + '-b -numk 1000 -rkmax 7.5', + '-in1ef -cc 0.00001 -fc 0.5 -i 100', + [ + r'^:ENE.*-4018.07', + r'^:FGL001.*\s+[0.]+\s+[0.]+\s+[0.]+\s+total forces', + r'^:FGL002.*14.63.*total forces', + ]), +] + +moduleclass = 'chem' -- GitLab From b9c43dfe98cf7377649301ad3a894beae3a99213 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 10 Oct 2014 18:29:47 +0200 Subject: [PATCH 0083/1217] add missing patch files for WIEN2k 14.1 --- .../w/WIEN2k/WIEN2k-14.1_fix-tetra.patch | 57 +++ .../w/WIEN2k/WIEN2k-14.1_fix-x_lapw.patch | 461 ++++++++++++++++++ .../WIEN2k-14.1_lapw5-main-accuracy-fix.patch | 22 + 3 files changed, 540 insertions(+) create mode 100644 easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1_fix-tetra.patch create mode 100644 easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1_fix-x_lapw.patch create mode 100644 easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1_lapw5-main-accuracy-fix.patch diff --git a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1_fix-tetra.patch b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1_fix-tetra.patch new file mode 100644 index 0000000000..ef8bc83ba2 --- /dev/null +++ b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1_fix-tetra.patch @@ -0,0 +1,57 @@ +see http://www.mail-archive.com/wien%40zeus.theochem.tuwien.ac.at/msg11178.html +--- WIEN2k_14.orig/SRC_tetra/tetra.f 2014-09-19 13:30:20.757390463 +0200 ++++ WIEN2k_14/SRC_tetra/tetra.f 2014-09-19 13:30:37.671774186 +0200 +@@ -165,7 +165,7 @@ + SO=1.d0 + NSORT=1 + KLMAX=1 +- allocate( TEXT(Nsort+1),QTL(Nsort+1,klmax+1),xqtl(nsort,lxdos2*(lxdos2+1)) ) ++ allocate( TEXT(0:Nsort+1),QTL(Nsort+1,klmax+1),xqtl(nsort,lxdos2*(lxdos2+1)) ) + IDOS(1,1)=0 + IDOS(1,2)=0 + DOSTYP(1)='TOTAL' +@@ -220,7 +220,7 @@ + READ(4,1010) ALAT1,ALAT2,ALAT3,EFERM + READ(4,1020) MINWAV,MAXWAV,KSPIN,NSORT,kso,kLmax + if(klmax.eq.0) klmax=14 +- allocate( TEXT(Nsort+1),QTL(Nsort+1,klmax+1),xqtl(nsort,lxdos2*(lxdos2+1)) ) ++ allocate( TEXT(0:Nsort+1),QTL(Nsort+1,klmax+1),xqtl(nsort,lxdos2*(lxdos2+1)) ) + ! INCREASE NSORT BY ONE FOR THE INTERSTITIAL DOS (OUT) + NSORT=NSORT+1 + WRITE(6,2000) SYSTEM +@@ -240,7 +240,7 @@ + DO 107 ISORT=1,NSORT + IF(ISORT.EQ.NSORT) GOTO 107 + READ(4,1030) JATOM,NEQU,isplit,text(isort) +- WRITE(6,2030) JATOM,NEQU,isplit,text(isort) ++ WRITE(6,2030) JATOM,NEQU,isplit,text(isort) + 107 CONTINUE + nndos_save=nndos + DO 90 JCASE=1,NNDOS +@@ -364,7 +364,11 @@ + if(nst.eq.1.and.ibrsw.eq.-1) then ! for one k-point calculate the DOS with broadening + ibrsw=1 + print*,'Only 1 k-point, switching to Gauss-broadening with',br +- endif ++ if(br.lt.1.d-6) then ++ br=0.002 ++ print*,' No broadening specified, increasing broadening to',br ++ endif ++ endif + if(ibrsw.ne.-1) then + CALL broadDOS (ibrsw,br,brlor,NNDOS,1,JEND,EMIN,EMAX,NYMIN,NYMAX,DE,ebs,fc,nst,densty) + endif +@@ -523,7 +527,7 @@ + 1000 FORMAT(1X,A70,/) + 1010 FORMAT(1X,15X,3F8.5,16X,F10.5) + 1020 FORMAT(1X,I4,10X,I4,8X,I1,7X,I3,8x,i2,6x,i3) +- 1030 FORMAT(6X,I3,7X,I2,9x,i2,2x,a200) ++ 1030 FORMAT(6X,I3,7X,I2,9x,i2,2x,a96) + 1040 FORMAT(6X,I4) + 1041 FORMAT(5X,I5) + 1050 FORMAT(F10.5,I3,F8.5,3X,(40F8.5)) +@@ -532,3 +536,4 @@ + 2020 FORMAT(1X,I4,' < NMAT < ',I4,3X,'SPIN=',I1,3X,'NATO=',I4) + 2030 FORMAT(1X,'JATOM',I3,2X,'MULT=',I2,2x,'ISPLIT=',i2,2x,a96) + END ++ diff --git a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1_fix-x_lapw.patch b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1_fix-x_lapw.patch new file mode 100644 index 0000000000..a17c8dbe58 --- /dev/null +++ b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1_fix-x_lapw.patch @@ -0,0 +1,461 @@ +see http://zeus.theochem.tuwien.ac.at/pipermail/wien/2014-September/021667.html +--- x_lapw.orig 2014-10-09 15:03:02.181799391 +0200 ++++ x_lapw 2014-10-09 15:08:25.254125143 +0200 +@@ -4,28 +4,28 @@ + set running = ".running.$$.`hostname`.`date +%d%m%H%M%S`" + echo $$ >$running + onintr clear +-alias error 'echo ">>> ($name) \!* -> exit"; goto error' ++alias error 'echo ">>> ($name) \!* -> exit"; goto error' + +-set name = $0 #full name of script-file +-set bin = $name:h #default directory for WIEN-executables ++set name = $0 #full name of script-file ++set bin = $name:h #default directory for WIEN-executables + if !(-d $bin) set bin = . +-set name = $name:t ++set name = $name:t + +-set def = def #def-file +-set tmp = ( ) #tmp-files, to be deleted before exit +-set log = :log #log-file +-set t = time # +-set updn # spinpolarization switch +-set dnup = 'dn' # spinpolarization switch ++set def = def #def-file ++set tmp = ( ) #tmp-files, to be deleted before exit ++set log = :log #log-file ++set t = time # ++set updn # spinpolarization switch ++set dnup = 'dn' # spinpolarization switch + set spin=1 # for -it in lapw1 + #set ne_it=1.1 # for -it in lapw1 + set emin=-999.0 # for -emin XX in lapw2 + set emax=999.0 # for -all XX YY in lapw2 + set settol=0.00001 # tol parameter for sgroup + set wf=0 # wplot: WF to plot (0 = read from file) +-set sc # semicore-switch +-set so # spinorbit-switch +-set sodum # spinorbit-switch ++set sc # semicore-switch ++set so # spinorbit-switch ++set sodum # spinorbit-switch + #set cmplx + set cmplx1 + set cmplx2 +@@ -62,12 +62,12 @@ + unset efg # regular run in lapw2 + unset emin1 # regular run in lapw2 + unset emax1 # regular run in lapw2 +-unset command #command +-unset file #file-head +-unset deffile_only #create just def file +-unset fftstop #for dstart +-unset vresp #for lapw2 +-unset help_files #for lapw2 ++unset command #command ++unset file #file-head ++unset deffile_only #create just def file ++unset fftstop #for dstart ++unset vresp #for lapw2 ++unset help_files #for lapw2 + unset super # for dstart, creates new.clmsum + unset rxes # for tetra, uses rxes-weight file + unset rxesw # for tetra, writes rxes-weight file +@@ -88,9 +88,9 @@ + + if ( $?SCRATCH && $SCRATCH != '') then + set scratch=`echo $SCRATCH | sed -e 's/\/$//'`/ # we are afraid +- # different settings in different +- # computing centers +- #use global variable for scratch if set ++ # different settings in different ++ # computing centers ++ #use global variable for scratch if set + endif + set argv1=($argv) + +@@ -138,16 +138,16 @@ + shift; breaksw + case -it: + set iter +- shift; breaksw ++ shift; breaksw + case -noHinv: + set iter + unset readHinv +- shift; breaksw ++ shift; breaksw + case -noHinv0: + set iter + unset readHinv + set writeHinv +- shift; breaksw ++ shift; breaksw + # case -ne_it: + # shift;set ne_it=$1 + # shift; breaksw +@@ -169,36 +169,36 @@ + shift; breaksw + case -help_files: + set help_files +- shift; breaksw ++ shift; breaksw + case -vresp: + set vresp +- shift; breaksw ++ shift; breaksw + case -eece: + set eece=eece +- shift; breaksw ++ shift; breaksw + case -grr: + set grr=grr +- shift; breaksw ++ shift; breaksw + case -orb: + set orb +- shift; breaksw ++ shift; breaksw + case -nmat_only: + set nmat_only +- shift; breaksw ++ shift; breaksw + case -nohns: + set nohns +- shift; breaksw ++ shift; breaksw + case -enefile: + set enefile +- shift; breaksw ++ shift; breaksw + case -rxes: + set rxes +- shift; breaksw ++ shift; breaksw + case -rxesw: + set rxesw + shift;set rxese1 = $1 + shift;set rxese2 = $1 +- shift; breaksw ++ shift; breaksw + case -so: + set so = 'so' + set sodum = 'dum' +@@ -313,7 +313,7 @@ + endif + shift; breaksw + ## w2w stuff ## +- case -pp: # passed on to Wannier90 ++ case -pp: # passed on to Wannier90 + shift; breaksw + case -wf: + shift; set wf = $1 +@@ -338,7 +338,7 @@ + + if !($?file) then + set file = `pwd` +-set file = $file:t #tail of file-names ++set file = $file:t #tail of file-names + endif + + touch $file.struct +@@ -409,7 +409,7 @@ + #echo "`date`> ($name) $command $argv1[2-]" >> $log + echo "`date`> ($name) $argv1" >> $log + +-set def = $updn$command$sc.def ++set def = $updn$command$sc.def + #touch $def + + switch ($command) +@@ -1200,7 +1200,7 @@ + cat << theend > $def + 6,'$file.outputst', 'unknown','formatted' + 7,'$file.tmpden', 'unknown','formatted' +-10,'$file.tmp', 'unknown','unformatted' ++10,'$file.tmp', 'unknown','unformatted' + 11,'$file.vsp_st', 'unknown','formatted' + 12,'$file.vspdn_st', 'unknown','formatted' + 13,'$file.sigma', 'unknown','formatted' +@@ -1268,7 +1268,7 @@ + + case mixer_vresp: + set exe = mixer +- if !(-e $file.clmvalup || -z $file.clmvalup) then ++ if !(-e $file.clmvalup || -z $file.clmvalup) then + cat << theend > $def + 5,'$file.inm_vresp', 'old', 'formatted',0 + 6,'$file.outputm_vresp', 'unknown','formatted',0 +@@ -1283,7 +1283,7 @@ + 32,'$file.vrespbroyd2', 'unknown','unformatted',164896 + 51,'$file.vrespsum', 'unknown','formatted',0 + theend +- else ++ else + cat << theend > $def + 5,'$file.inm_vresp', 'old', 'formatted',0 + 6,'$file.outputm_vresp', 'unknown','formatted',0 +@@ -1304,7 +1304,7 @@ + 52,'$file.vrespdn', 'unknown','formatted',0 + 11,'$file.vrespsum', 'unknown','formatted',0 + theend +- endif ++ endif + breaksw + + +@@ -1318,7 +1318,7 @@ + cp $file.struct $file.struct_old + endif + set exe = $command +- if !(-e $file.clmvalup || -z $file.clmvalup) then ++ if !(-e $file.clmvalup || -z $file.clmvalup) then + cat << theend > $def + 5,'$file.inm', 'old', 'formatted',0 + 6,'$file.outputm', 'unknown','formatted',0 +@@ -1334,7 +1334,7 @@ + 32,'$file.broyd2', 'unknown','unformatted',164896 + 51,'$file.clmsum', 'unknown','formatted',0 + theend +- else ++ else + cat << theend > $def + 5,'$file.inm', 'old', 'formatted',0 + 6,'$file.outputm', 'unknown','formatted',0 +@@ -1364,7 +1364,7 @@ + echo "75,'$file.dmatdn_old','unknown','formatted',0" >> $def + echo "76,'$file.dmatud_old','unknown','formatted',0" >> $def + endif +- endif ++ endif + + if($eece == 'eece') then + echo "71,'$file.vorbup','unknown','formatted',0" >> $def +@@ -1557,16 +1557,16 @@ + if($para == para) then + set cnum=0 + if(-f .processes) then +- @ cnum=`grep -ce "^[0-9][0-9]* :" .processes` +-# @ cnum+=1 ++ @ cnum=`grep -ce "^[0-9][0-9]* :" .processes` ++# @ cnum+=1 + endif + #the original file will only be removed if there are sources to concat + if(-f "$file.output$typ$updnso" && $cnum>0) then +- rm "$file.output$typ$updnso" ++ rm "$file.output$typ$updnso" + endif + unset irr + if(-f "$file.irrep$hf$so${updn}_$cnum" && $cnum>0) then +- if(-f "$file.irrep$hf$so${updn}" ) rm "$file.irrep$hf$so${updn}" ++ if(-f "$file.irrep$hf$so${updn}" ) rm "$file.irrep$hf$so${updn}" + head -2 "$file.irrep$hf$so${updn}_$cnum" >"$file.irrep$hf$so${updn}" + set irr + endif +@@ -1574,9 +1574,9 @@ + while($count <= $cnum) + if($?irr) then + tail -n +3 $file.irrep$hf$so${updn}_$count >>$file.irrep$hf$so${updn} +- endif ++ endif + cat "$file.output$typ${updnso}_$count" >>"$file.output$typ$updnso" +- @ count++ ++ @ count++ + end + echo $file.output$typ$updnso created from $cnum parallel files + endif +@@ -2251,10 +2251,10 @@ + 7,'$file.amn$w90updn', 'unknown','formatted', 0 + 8,'$file.mmn$w90updn', 'unknown','formatted', 0 + 9,'${scratch}$file.vector$sc$hf$soupdn', 'unknown','unformatted',9000 +- 10,'$file.nnkp', 'old', 'formatted', 0 +- 12,'$file.eig$updn', 'unknown','formatted', 0 ++ 10,'$file.nnkp', 'old', 'formatted', 0 ++ 12,'$file.eig$updn', 'unknown','formatted', 0 + 18,'$file.vsp$updn', 'old', 'formatted', 0 +- 20,'$file.struct', 'old', 'formatted', 0 ++ 20,'$file.struct', 'old', 'formatted', 0 + 50,'$file.energy$soupdn', 'old', 'formatted', 0 + 51,'$file.fermi$updn' 'old', 'formatted', 0 + EOF +@@ -2296,23 +2296,23 @@ + if ($para == para) then + set cnum=0 + if(-f .processes) then +- @ cnum=`grep -ce "^[0-9][0-9]* :" .processes` ++ @ cnum=`grep -ce "^[0-9][0-9]* :" .processes` + endif + #the original file will only be removed if there are sources to concat + if(-f "$file.output$typ$updnso" && $cnum>0) then +- rm "$file.output$typ$updnso" ++ rm "$file.output$typ$updnso" + endif + set count=1 + while($count <= $cnum) + cat "$file.output$typ${updnso}_$count" >>"$file.output$typ$updnso" +- @ count++ ++ @ count++ + end + echo $file.output$typ$updnso created from $cnum parallel files + endif + cat >$def <$def + 4,'$file.klist', 'old', 'formatted', 0 + 10,'${scratch}$file.vector$sc$hf$so$updn', 'old', 'unformatted',0 +- 11,'$file.vector$sc$hf$so$updn', 'unknown','unformatted',0 +- 20,'$file.struct', 'old', 'formatted', 0 ++ 11,'$file.vector$sc$hf$so$updn', 'unknown','unformatted',0 ++ 20,'$file.struct', 'old', 'formatted', 0 + 50,'$file.energy$so$updn', 'old', 'formatted', 0 + 51,'$file.energy$so$updn', 'unknown','formatted', 0 + EOF +@@ -2402,7 +2402,7 @@ + ### end w2w ### + + default: +-error command $command does not exist ++error command $command does not exist + breaksw + + endsw +@@ -2445,10 +2445,11 @@ + if ($gw == 'gw') then + set exe = ($exe -gw) + endif +-endif ++endif + + echo $exe >>$running + $t $bin/$exe $def ++ + if($status != 0) then + echo "error: command $bin/$exe $def failed" + if ($?qtl || $?alm || $?almd || $?qdmft || $?band || $?fermi || $?efg || $?emin1 || $?emax1 ) then +@@ -2468,28 +2469,28 @@ + + set lapw2test=`echo $exe | cut -c 1-5` + if("$lapw2test" == 'lapw2') then ++ if ($?qtl || $?alm || $?almd || $?qdmft || $?band || $?fermi || $?efg || $?emin1 || $?emax1 ) then ++ if( -e .oldin2 ) mv .oldin2 $file.in2$cmplx ++ endif + if(! $?in1orig & ! $?band & ! $?emin1 & ! $?emax1) then +- if( -e $file.scf2$sc$updn && ! -z $file.scf2$sc$updn) then +- if($cmplx == 'c') then ++ if( -e $file.scf2$sc$updn && ! -z $file.scf2$sc$updn) then ++ if($cmplx == 'c') then + if(! (-e $file.in1$cmplx$sc && ! -z $file.in1$cmplx$sc)) set cmplx + endif +- set eferm=`grep ':FER :' $file.scf2$sc$updn|cut -f 2 -d=` +- set efold=`head -1 $file.in1$cmplx${sc}|cut -c11-17 | sed -e "s/[a-zA-Z(,=]//g"` ++ set eferm=`grep ':FER :' $file.scf2$sc$updn|cut -f 2 -d=` ++ set efold=`head -1 $file.in1$cmplx${sc}|cut -c11-17 | sed -e "s/[a-zA-Z(,=]//g"` + if($#efold == 0 ) set efold=0.5 +- set eferm=`echo " if($eferm > $efold) {if ($eferm > $efold + 0.2) {$efold + 0.2} else {$eferm} } else {if($eferm < $efold - 0.2) {$efold - 0.2} else ($eferm*0.75+$efold*0.25) }" | bc -l` # allow for max change of ef-old +- 0.2, pratt mix +- set modus=`head -1 $file.in1$cmplx${sc} | cut -c1-5` +- echo "$modus EF=$eferm (WFFIL, WFPRI, ENFIL, SUPWF) " >$file.in1$cmplx${sc}_tmp +- tail -n +2 $file.in1$cmplx${sc} >> $file.in1$cmplx${sc}_tmp +- mv $file.in1$cmplx${sc}_tmp $file.in1$cmplx${sc} +- endif ++ set eferm=`echo " if($eferm > $efold) {if ($eferm > $efold + 0.2) {$efold + 0.2} else {$eferm} } else {if($eferm < $efold - 0.2) {$efold - 0.2} else ($eferm*0.75+$efold*0.25) }" | bc -l` # allow for max change of ef-old +- 0.2, pratt mix ++ set modus=`head -1 $file.in1$cmplx${sc} | cut -c1-5` ++ echo "$modus EF=$eferm (WFFIL, WFPRI, ENFIL, SUPWF) " >$file.in1$cmplx${sc}_tmp ++ tail -n +2 $file.in1$cmplx${sc} >> $file.in1$cmplx${sc}_tmp ++ mv $file.in1$cmplx${sc}_tmp $file.in1$cmplx${sc} ++ endif + endif + endif + + clear: + #cleanup +-if ($?qtl || $?alm || $?almd || $?qdmft || $?band || $?fermi || $?efg || $?emin1 || $?emax1 ) then +- if( -e .oldin2 ) mv .oldin2 $file.in2$cmplx +-endif + if ($?rxesw ) then + if( -e .oldint ) mv .oldint $file.int + endif +@@ -2499,10 +2500,10 @@ + error: + rm $running + +-help: #help exit ++help: #help exit + cat << theend + +-USAGE: $0 PROGRAMNAME [flags] ++USAGE: $0 PROGRAMNAME [flags] + + PURPOSE:runs WIEN executables: afminput,aim,arrows,broadening,cif2struct, + clmaddsub,clmcopy,clminter,convham,conv2prim,dftd3,dipan,dmftproj, +@@ -2514,30 +2515,30 @@ + symmetso,telnes3,tetra,txspec,wannier90,w2w,w2waddsp,wplot,xspec + + FLAGS: +--f FILEHEAD -> FILEHEAD for path of struct & input-files +--t/-T -> suppress output of running time +--h/-H -> help +--d -> create only the def-file +--up -> runs up-spin +--dn -> runs dn-spin +--du -> runs up/dn-crossterm +--sc -> runs semicore calculation +--c -> complex calculation (no inversion symmetry present) ++-f FILEHEAD -> FILEHEAD for path of struct & input-files ++-t/-T -> suppress output of running time ++-h/-H -> help ++-d -> create only the def-file ++-up -> runs up-spin ++-dn -> runs dn-spin ++-du -> runs up/dn-crossterm ++-sc -> runs semicore calculation ++-c -> complex calculation (no inversion symmetry present) + -p -> run lapw0/1/2/hf/so/dm/optic in parallel (needs .machines or .processes file) + -scratch dir/ ->defines (and makes) $SCRATCH variable + -grr -> lapw0 for mBJ or hf (using $file.in0_grr) + -eece -> for hybrid-functionals (lapw0,lapw2,mixer,orb,sumpara) + -band -> for lapw1/2/hf bandstructures: uses *klist_band +--orb -> runs lapw1 with LDA+U/OP or B-ext correction, mixer with dmat +--it -> runs lapw1 with iterative diagonalization +--noHinv -> runs lapw1 with iterative diag. without Hinv +--noHinv0 -> runs lapw1 with iterative diag. writing new Hinv +--nohns -> runs lapw1 without HNS +--nmat_only-> runs lapw1 and yields only the matrixsize +--nmr -> runs lapw1 in NMR mode +--in1orig -> runs lapw2 but does not modify case.in1 +--emin X -> runs lapw2 with EMIN=X (in $file.in2$cmplx) +--all X Y -> runs lapw2 with ALL and E-window X-Y (in $file.in2$cmplx) ++-orb -> runs lapw1 with LDA+U/OP or B-ext correction, mixer with dmat ++-it -> runs lapw1 with iterative diagonalization ++-noHinv -> runs lapw1 with iterative diag. without Hinv ++-noHinv0 -> runs lapw1 with iterative diag. writing new Hinv ++-nohns -> runs lapw1 without HNS ++-nmat_only-> runs lapw1 and yields only the matrixsize ++-nmr -> runs lapw1 in NMR mode ++-in1orig -> runs lapw2 but does not modify case.in1 ++-emin X -> runs lapw2 with EMIN=X (in $file.in2$cmplx) ++-all X Y -> runs lapw2 with ALL and E-window X-Y (in $file.in2$cmplx) + -qtl -> runs lapw2 and calculates QTL + -alm -> runs lapw2 and calculates ALM,BLM + -almd -> runs lapw2 and calculates ALM,BLM in lapw2 for DMFT (Aichhorn) +@@ -2546,11 +2547,11 @@ + -vresp-> runs lapw2 and creates case.vrespval (for TAU/meta-GGA) + -fermi-> runs lapw2 with FERMI switch + -efg -> runs lapw2 with EFG switch +--so -> runs lapw2/optic/spaghetti with def-file for spin-orbit calc. ++-so -> runs lapw2/optic/spaghetti with def-file for spin-orbit calc. + -hf -> runs lapw2 with Hartree-Fock/hybrid vectors + -diaghf -> calculates only the diagonal elements of HF Hamiltonian + -nonself -> calculates hf with Ex only (no eigenvalues/vectors) +--fbz -> runs kgen and generates a full mesh in the BZ ++-fbz -> runs kgen and generates a full mesh in the BZ + -fft -> runs dstart only up to case.in0_std creation + -super-> runs dstart and creates new_super.clmsum (and not $file.clmsum) + -lcore-> runs dstart with $file.rsplcore (produces $file.clmsc) diff --git a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1_lapw5-main-accuracy-fix.patch b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1_lapw5-main-accuracy-fix.patch new file mode 100644 index 0000000000..3800834f1b --- /dev/null +++ b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1_lapw5-main-accuracy-fix.patch @@ -0,0 +1,22 @@ +http://www.mail-archive.com/wien%40zeus.theochem.tuwien.ac.at/msg11158.html +--- WIEN2k_14.orig/SRC_lapw5/main1.f 2014-09-19 13:30:20.757390463 +0200 ++++ WIEN2k_14/SRC_lapw5/main1.f 2014-09-19 13:30:37.671774186 +0200 +@@ -346,7 +346,7 @@ + if(addsub.eq.' ADD') fadd=1.d0 + if(addsub.eq.' SUB') fadd=-1.d0 + +- IF(IUNIT.EQ.'ANG ') FAK=Bohr**3 ++ IF(IUNIT.EQ.'ANG ') FAK=1.D0/Bohr**3 ! Change to avoid altering lapw5 output (fix to WIEN2k 14.1): Was 6.7551d0 in WIEN2k 13.1 (and likely in verisons < 13.1) but changed to increase accuracy + R=VNORM(VX) + RELX=R + R=VNORM(VY) +@@ -373,7 +373,7 @@ + ! + ! Correct TCharge for units + if(UseSTM)then +- if(IUNIT.EQ.'ANG ')CTarget=CTarget/FAK ++ if(IUNIT.EQ.'ANG ')CTarget=CTarget*FAK ! Change to avoid altering output + ! Array for STM (LDM) + allocate(STM(NPX,NPY)) + endif + -- GitLab From e230ec249f7d63c8eee98e0c89f82626da93a587 Mon Sep 17 00:00:00 2001 From: Benjamin Roberts Date: Wed, 15 Oct 2014 15:19:56 +1300 Subject: [PATCH 0084/1217] Changed web link and removed auto-generated comment --- easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb index dd9a1e76e6..476bf7eb48 100644 --- a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb +++ b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb @@ -1,9 +1,9 @@ easyblock = "PackedBinary" name = "ORCA" -version = "3_0_2-linux_x86-64" # tweaked by EasyBuild (was: '3_0_0-linux_x86-64_openmpi_165') +version = "3_0_2-linux_x86-64" -homepage = 'http://www.thch.uni-bonn.de/tc/orca/' +homepage = 'http://cec.mpg.de/forum/' description = """ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- -- GitLab From 5f96994b9647da485d2ba28b29001cc09ddd45e6 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 16 Oct 2014 09:24:06 +0200 Subject: [PATCH 0085/1217] libint2 renamed to Libint --- .../h/horton/horton-1.0.2-goolf-1.4.10-Python-2.7.3.eb | 2 +- .../h/horton/horton-1.0.2-ictce-4.1.13-Python-2.7.3.eb | 2 +- .../h/horton/horton-1.1.0-goolf-1.4.10-Python-2.7.3.eb | 2 +- .../h/horton/horton-1.1.0-ictce-4.1.13-Python-2.7.3.eb | 2 +- .../h/horton/horton-1.2.0-goolf-1.4.10-Python-2.7.3.eb | 2 +- .../h/horton/horton-1.2.0-ictce-4.1.13-Python-2.7.3.eb | 2 +- .../Libint-2.0.3-goolf-1.4.10.eb} | 2 +- .../Libint-2.0.3-ictce-4.1.13.eb} | 2 +- .../Libint-2.0.3-ictce-5.5.0.eb} | 2 +- .../Libint-2.0.3-intel-2014b.eb} | 2 +- 10 files changed, 10 insertions(+), 10 deletions(-) rename easybuild/easyconfigs/l/{libint2/libint2-2.0.3-goolf-1.4.10.eb => Libint/Libint-2.0.3-goolf-1.4.10.eb} (97%) rename easybuild/easyconfigs/l/{libint2/libint2-2.0.3-ictce-4.1.13.eb => Libint/Libint-2.0.3-ictce-4.1.13.eb} (97%) rename easybuild/easyconfigs/l/{libint2/libint2-2.0.3-ictce-5.5.0.eb => Libint/Libint-2.0.3-ictce-5.5.0.eb} (97%) rename easybuild/easyconfigs/l/{libint2/libint2-2.0.3-intel-2014b.eb => Libint/Libint-2.0.3-intel-2014b.eb} (97%) diff --git a/easybuild/easyconfigs/h/horton/horton-1.0.2-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.0.2-goolf-1.4.10-Python-2.7.3.eb index 681e2b2371..944bc27a5e 100644 --- a/easybuild/easyconfigs/h/horton/horton-1.0.2-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/horton/horton-1.0.2-goolf-1.4.10-Python-2.7.3.eb @@ -23,7 +23,7 @@ dependencies = [ ('h5py', '2.1.3', versionsuffix), ('matplotlib', '1.2.1', versionsuffix), ('sympy', '0.7.2', versionsuffix), - ('libint2', '2.0.3'), + ('Libint', '2.0.3'), ('libxc', '2.0.1'), ] diff --git a/easybuild/easyconfigs/h/horton/horton-1.0.2-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.0.2-ictce-4.1.13-Python-2.7.3.eb index 5a976445f4..20b6060452 100644 --- a/easybuild/easyconfigs/h/horton/horton-1.0.2-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/horton/horton-1.0.2-ictce-4.1.13-Python-2.7.3.eb @@ -23,7 +23,7 @@ dependencies = [ ('h5py', '2.1.3', versionsuffix), ('matplotlib', '1.2.1', versionsuffix), ('sympy', '0.7.2', versionsuffix), - ('libint2', '2.0.3'), + ('Libint', '2.0.3'), ('libxc', '2.0.1'), ] diff --git a/easybuild/easyconfigs/h/horton/horton-1.1.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.1.0-goolf-1.4.10-Python-2.7.3.eb index 626c3d8f37..778a209cab 100644 --- a/easybuild/easyconfigs/h/horton/horton-1.1.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/horton/horton-1.1.0-goolf-1.4.10-Python-2.7.3.eb @@ -23,7 +23,7 @@ dependencies = [ ('h5py', '2.1.3', versionsuffix), ('matplotlib', '1.2.1', versionsuffix), ('sympy', '0.7.2', versionsuffix), - ('libint2', '2.0.3'), + ('Libint', '2.0.3'), ('libxc', '2.0.2'), ] diff --git a/easybuild/easyconfigs/h/horton/horton-1.1.0-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.1.0-ictce-4.1.13-Python-2.7.3.eb index 7ddb3a0d2d..1b68798b3f 100644 --- a/easybuild/easyconfigs/h/horton/horton-1.1.0-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/horton/horton-1.1.0-ictce-4.1.13-Python-2.7.3.eb @@ -23,7 +23,7 @@ dependencies = [ ('h5py', '2.1.3', versionsuffix), ('matplotlib', '1.2.1', versionsuffix), ('sympy', '0.7.2', versionsuffix), - ('libint2', '2.0.3'), + ('Libint', '2.0.3'), ('libxc', '2.0.2'), ] diff --git a/easybuild/easyconfigs/h/horton/horton-1.2.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.2.0-goolf-1.4.10-Python-2.7.3.eb index 09b7559075..3f0df333bf 100644 --- a/easybuild/easyconfigs/h/horton/horton-1.2.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/horton/horton-1.2.0-goolf-1.4.10-Python-2.7.3.eb @@ -23,7 +23,7 @@ dependencies = [ ('h5py', '2.1.3', versionsuffix), ('matplotlib', '1.2.1', versionsuffix), ('sympy', '0.7.2', versionsuffix), - ('libint2', '2.0.3'), + ('Libint', '2.0.3'), ('libxc', '2.0.2'), ] diff --git a/easybuild/easyconfigs/h/horton/horton-1.2.0-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.2.0-ictce-4.1.13-Python-2.7.3.eb index 73a3298222..fcd8a85a50 100644 --- a/easybuild/easyconfigs/h/horton/horton-1.2.0-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/horton/horton-1.2.0-ictce-4.1.13-Python-2.7.3.eb @@ -23,7 +23,7 @@ dependencies = [ ('h5py', '2.1.3', versionsuffix), ('matplotlib', '1.2.1', versionsuffix), ('sympy', '0.7.2', versionsuffix), - ('libint2', '2.0.3'), + ('Libint', '2.0.3'), ('libxc', '2.0.2'), ] diff --git a/easybuild/easyconfigs/l/libint2/libint2-2.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-goolf-1.4.10.eb similarity index 97% rename from easybuild/easyconfigs/l/libint2/libint2-2.0.3-goolf-1.4.10.eb rename to easybuild/easyconfigs/l/Libint/Libint-2.0.3-goolf-1.4.10.eb index 6216ca78da..cd9044af15 100644 --- a/easybuild/easyconfigs/l/libint2/libint2-2.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -name = 'libint2' +name = 'Libint' version = '2.0.3' homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' diff --git a/easybuild/easyconfigs/l/libint2/libint2-2.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-4.1.13.eb similarity index 97% rename from easybuild/easyconfigs/l/libint2/libint2-2.0.3-ictce-4.1.13.eb rename to easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-4.1.13.eb index d3406da67e..d79c3c1677 100644 --- a/easybuild/easyconfigs/l/libint2/libint2-2.0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-4.1.13.eb @@ -1,4 +1,4 @@ -name = 'libint2' +name = 'Libint' version = '2.0.3' homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' diff --git a/easybuild/easyconfigs/l/libint2/libint2-2.0.3-ictce-5.5.0.eb b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-5.5.0.eb similarity index 97% rename from easybuild/easyconfigs/l/libint2/libint2-2.0.3-ictce-5.5.0.eb rename to easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-5.5.0.eb index 4a5fc5c6ce..74bb0c3a48 100644 --- a/easybuild/easyconfigs/l/libint2/libint2-2.0.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-5.5.0.eb @@ -1,4 +1,4 @@ -name = 'libint2' +name = 'Libint' version = '2.0.3' homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' diff --git a/easybuild/easyconfigs/l/libint2/libint2-2.0.3-intel-2014b.eb b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2014b.eb similarity index 97% rename from easybuild/easyconfigs/l/libint2/libint2-2.0.3-intel-2014b.eb rename to easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2014b.eb index c398d035b1..baba667d3c 100644 --- a/easybuild/easyconfigs/l/libint2/libint2-2.0.3-intel-2014b.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2014b.eb @@ -1,4 +1,4 @@ -name = 'libint2' +name = 'Libint' version = '2.0.3' homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' -- GitLab From 3f22cd7b616285515a2ac86cedb257ac00aa3f4a Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 16 Oct 2014 10:29:37 +0200 Subject: [PATCH 0086/1217] libint revert to v1.1.4 as cp2k version 2.5.1 is not compatible with libint v2.x.x --- .../c/CP2K/CP2K-2.5.1-intel-2014b.eb | 2 +- .../l/Libint/Libint-1.1.4-intel-2014b.eb | 24 +++++++++++++++++++ 2 files changed, 25 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.5.1-intel-2014b.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.5.1-intel-2014b.eb index 2d81f473b3..2e2cd53e1d 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-2.5.1-intel-2014b.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.5.1-intel-2014b.eb @@ -19,7 +19,7 @@ patches = [ ] dependencies = [ - ('libint2', '2.0.3'), + ('Libint', '1.1.4'), ('libxc', '2.2.0'), ] diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb new file mode 100644 index 0000000000..dc1536f75a --- /dev/null +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb @@ -0,0 +1,24 @@ +name = 'Libint' +version = '1.1.4' + +homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body + matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" + + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') + +configopts = "--with-pic --enable-shared --enable-deriv --enable-r12" + +sanity_check_paths = { + 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + + ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + + ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], + 'dirs':[], +} + +moduleclass = 'chem' -- GitLab From 46f83c565eb9c1b33eb32c16db2825c26aa4a26c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bal=C3=A1zs=20Hajgat=C3=B3?= Date: Wed, 22 Oct 2014 11:40:50 +0200 Subject: [PATCH 0087/1217] Update Libint-1.1.4-intel-2014b.eb empty line dropped. --- easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb index dc1536f75a..84d3d9f7a0 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb @@ -5,7 +5,6 @@ homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" - toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'opt': True, 'optarch': True} -- GitLab From dac4073feefbb62d8660cbd7c1a56cab16bbfbb2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 22 Oct 2014 15:00:12 +0200 Subject: [PATCH 0088/1217] add easyconfig for GAMESS-US --- ...MESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb new file mode 100644 index 0000000000..c2b22536d1 --- /dev/null +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb @@ -0,0 +1,18 @@ +name = 'GAMESS-US' +version = '20130501-R1' + +homepage = 'http://www.msg.ameslab.gov/gamess/' +description = """The General Atomic and Molecular Electronic Structure System (GAMESS) + is a general ab initio quantum chemistry package.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14-no-OFED'} +toolchainopts = {'usempi': True, 'optarch': False} + +# manually download via http://www.msg.chem.iastate.edu/gamess/download.html (requires registration) +sources = ['gamess-%(version)s.tar.gz'] +patches = ['gamess_TMP.patch'] + +maxcpus = 4 +maxnodes = 1 + +moduleclass = 'chem' -- GitLab From 7e9588508dff275b96fd1990d58659aad57cdc15 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 22 Oct 2014 15:15:52 +0200 Subject: [PATCH 0089/1217] add missing patch for GAMESS-US --- .../easyconfigs/g/GAMESS-US/gamess_TMP.patch | 36 +++++++++++++++++++ 1 file changed, 36 insertions(+) create mode 100644 easybuild/easyconfigs/g/GAMESS-US/gamess_TMP.patch diff --git a/easybuild/easyconfigs/g/GAMESS-US/gamess_TMP.patch b/easybuild/easyconfigs/g/GAMESS-US/gamess_TMP.patch new file mode 100644 index 0000000000..795144d2dc --- /dev/null +++ b/easybuild/easyconfigs/g/GAMESS-US/gamess_TMP.patch @@ -0,0 +1,36 @@ +--- gamess/compall.orig 2014-06-11 18:37:54.000000000 +0200 ++++ gamess/compall 2014-06-11 18:40:44.000000000 +0200 +@@ -97,7 +97,7 @@ + # Debian uses the -m flag, since its -p replies "unknown" + # Gentoo uses the -m flag, since its -p gives an unusable multiword reply + if ($TARGET == linux64) then +- set chip=(`uname -p`) ++ set chip=(`uname -m`) + if (${#chip} > 1) set chip=unknown + if ($chip == unknown) set chip=`uname -m` + if ($chip == x86_64) set extraflags='-DLINUX64 -m64' +--- gamess/comp.orig 2014-06-11 21:26:28.000000000 +0200 ++++ gamess/comp 2014-06-11 21:26:03.000000000 +0200 +@@ -1806,6 +1804,8 @@ + breaksw + case 4.6: + case 4.7: ++ case 4.8: ++ case 4.9: + set EXTRAOPT="$EXTRAOPT -fno-whole-file" + breaksw + default: +--- gamess/source/zunix.c.orig 2014-06-12 08:52:56.000000000 +0200 ++++ gamess/source/zunix.c 2014-06-12 08:53:05.000000000 +0200 +@@ -443,7 +443,7 @@ + #ifdef LINUX64 + + #include +-#include ++#include + + #define FORTINT long + +[?25l[?12l[?25h[?1049h[?1h=[?12;25h[?12l[?25h[?25l"diff" [New File]~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ [?12l[?25h[?25lType :quit to exit Vim[?12l[?25h[?1l>[?1049lVim: Error reading input, exiting... +Vim: Finished. +2 files to edit -- GitLab From 8440f478e3d0e759226268d0c4386e3ac925c576 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Sun, 26 Oct 2014 01:01:04 +0200 Subject: [PATCH 0090/1217] make ncurses buildable on macosx mavericks and some more --- .../easyconfigs/n/ncurses/configure_darwin.patch | 11 +++++++++++ .../easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2.eb | 5 +++++ 2 files changed, 16 insertions(+) create mode 100644 easybuild/easyconfigs/n/ncurses/configure_darwin.patch diff --git a/easybuild/easyconfigs/n/ncurses/configure_darwin.patch b/easybuild/easyconfigs/n/ncurses/configure_darwin.patch new file mode 100644 index 0000000000..cbc78d120b --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/configure_darwin.patch @@ -0,0 +1,11 @@ +--- ncurses-5.9.orig/configure 2014-10-25 21:11:31.000000000 +0200 ++++ ncurses-5.9/configure 2014-10-25 21:11:10.000000000 +0200 +@@ -5584,7 +5584,7 @@ + chmod +x mk_shared_lib.sh + ;; + darwin*) #(vi +- EXTRA_CFLAGS="-no-cpp-precomp" ++ #EXTRA_CFLAGS="-no-cpp-precomp" + CC_SHARED_OPTS="-dynamic" + MK_SHARED_LIB='${CC} ${CFLAGS} -dynamiclib -install_name ${libdir}/`basename $@` -compatibility_version ${ABI_VERSION} -current_version ${ABI_VERSION} -o $@' + test "$cf_cv_shlib_version" = auto && cf_cv_shlib_version=abi diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2.eb index cd59ae4ab3..10e096c539 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2.eb @@ -6,6 +6,11 @@ description = """The Ncurses (new curses) library is a free software emulation o and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" +import platform + +if platform.system() == 'Darwin': + patches = ['configure_darwin.patch'] + toolchain = {'name': 'GCC', 'version': '4.8.2'} toolchainopts = {'optarch': True, 'pic': True} -- GitLab From 967cb01656789baa87c4e759fa2626f7b13f1f4d Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Sun, 26 Oct 2014 01:12:07 +0200 Subject: [PATCH 0091/1217] prepare for Lmod/5.8 --- .../easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb | 25 +++++++++++ easybuild/easyconfigs/l/Lmod/README.TXT | 35 --------------- easybuild/easyconfigs/l/Lmod/README.rst | 45 +++++++++++++++++++ easybuild/easyconfigs/l/Lmod/sourceme | 4 +- 4 files changed, 72 insertions(+), 37 deletions(-) create mode 100644 easybuild/easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb delete mode 100644 easybuild/easyconfigs/l/Lmod/README.TXT create mode 100644 easybuild/easyconfigs/l/Lmod/README.rst diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb new file mode 100644 index 0000000000..95a5ccbf3e --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb @@ -0,0 +1,25 @@ +name = "Lmod" +version = "5.8" + +homepage = "http://sourceforge.net/projects/lmod/" +description = """Lmod is a Lua based module system. Modules allow for dynamic modification + of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod + for a complete description. Lmod is a new implementation that easily handles the MODULEPATH + Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCE_TAR_BZ2] +source_urls = [ + 'http://sourceforge.net/projects/lmod/files/', + 'http://sourceforge.net/projects/lmod/files/Testing' +] + +dependencies = [("Lua", "5.1.4-8")] + +sanity_check_paths = { + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], + 'dirs': [] +} + +moduleclass = "tools" diff --git a/easybuild/easyconfigs/l/Lmod/README.TXT b/easybuild/easyconfigs/l/Lmod/README.TXT deleted file mode 100644 index 8922b05a78..0000000000 --- a/easybuild/easyconfigs/l/Lmod/README.TXT +++ /dev/null @@ -1,35 +0,0 @@ - -Summary: - -This directory contains (hopefully) sufficient gear in order to let you -bootstrap towards the Lmod implementation of environment modules. - -Howto: - -Assuming you have successfully used the bootstrap procedure of EasyBuild, -you should be able to initiate a recursive build of the following bits: - - `time eb Lmod-5.7-GCC-4.8.2.eb -r` - -l/Lmod/Lmod-5.7-GCC-4.8.2.eb ### so, you just aim for this one, with "-r" -l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb -n/ncurses/ncurses-5.9-GCC-4.8.2.eb -g/GCC/GCC-4.8.2.eb - -This set is expected to be the needed substrate to launch you towards Lmod, -which gets activated with the `sourceme` script sitting in the same directory: - -`source sourceme` # N.B. it does direct assignments on environment variables; that's intentional - -Then try: - -`ml av` # ie. the Lmod equivalent to `module avail` ; it should work - -If so, now you implemented the better instance of: https://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-17.html -Lmod's caching can help to work with *buildsets*; ref. https://fosdem.org/2014/schedule/event/hpc_devroom_hpcbios/ -You should now be able to try alternative Lmod/Lua versions, toggle cache, and so forth. - -enjoy, -Fotis - -2014-07-15 diff --git a/easybuild/easyconfigs/l/Lmod/README.rst b/easybuild/easyconfigs/l/Lmod/README.rst new file mode 100644 index 0000000000..f26f58a20d --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/README.rst @@ -0,0 +1,45 @@ +Summary +======= + +This directory contains (hopefully) sufficient gear in order to let you +bootstrap towards the Lmod implementation of environment modules. + +Howto +===== + +Assuming you have successfully used the bootstrap procedure of EasyBuild, +you should be able to initiate a recursive build of the following bits:: + + time eb Lmod-5.8-GCC-4.8.2.eb -r + +which is going to build the following modules/easyconfigs:: + + l/Lmod/Lmod-5.8-GCC-4.8.2.eb ### so, you just aim for this one, with "-r" + l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb + n/ncurses/ncurses-5.9-GCC-4.8.2.eb + g/GCC/GCC-4.8.2.eb + +If you are trying this under macosx, take care of the following aspects, as well: + +- export EASYBUILD_OPTARCH='' +- time eb GCC-4.8.2.eb --try-amend=parallel=1 +- time eb Lmod-5.8-GCC-4.8.2.eb -r ## ncurses should automatically kick a special patch + +This operation is expected to be the needed substrate to launch you towards Lmod, +which gets activated with the `sourceme` script sitting in the same directory:: + + source sourceme ## N.B. it does direct assignments on environment variables; that's intentional + +Then try:: + + ml av ## ie. the Lmod equivalent to `module avail` ; it should just work + +If so, now you implemented the better instance of: https://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-17.html +Lmod's caching can help to work with *buildsets*; ref. https://fosdem.org/2014/schedule/event/hpc_devroom_hpcbios/ +You should now be able to try alternative Lmod/Lua versions, toggle cache, and so forth. + +enjoy, +Fotis + +2014-10-26 + diff --git a/easybuild/easyconfigs/l/Lmod/sourceme b/easybuild/easyconfigs/l/Lmod/sourceme index f347d3eb52..6462b395ba 100644 --- a/easybuild/easyconfigs/l/Lmod/sourceme +++ b/easybuild/easyconfigs/l/Lmod/sourceme @@ -2,7 +2,7 @@ # # This script helps to implement policy: https://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-17.html # -# prereq: Lmod/5.7-GCC-4.8.2 +# prereq: Lmod/5.8-GCC-4.8.2 # prereq: Lua/5.1.4-8-GCC-4.8.2 # # build prereqs, take a note: GCC/4.8.2 & ncurses/5.9 @@ -12,7 +12,7 @@ EASYBUILD_PREFIX=${EASYBUILD_PREFIX:-"$HOME/.local/easybuild"} TOOLCHAIN="GCC-4.8.2" VERSIONLUA="5.1.4-8" -VERSIONLMOD="5.7" +VERSIONLMOD="5.8" PREFIXLUA=$EASYBUILD_PREFIX/software/Lua/$VERSIONLUA-$TOOLCHAIN PREFIXLMOD=$EASYBUILD_PREFIX/software/Lmod/$VERSIONLMOD-$TOOLCHAIN/lmod/$VERSIONLMOD -- GitLab From c7e4b807cf2ce9046d5249385a8c607cee7b68b5 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Sun, 26 Oct 2014 16:41:22 +0100 Subject: [PATCH 0092/1217] improve readme.rst Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/l/Lmod/README.rst | 29 ++++++++++--------------- 1 file changed, 12 insertions(+), 17 deletions(-) diff --git a/easybuild/easyconfigs/l/Lmod/README.rst b/easybuild/easyconfigs/l/Lmod/README.rst index f26f58a20d..48753e0ac6 100644 --- a/easybuild/easyconfigs/l/Lmod/README.rst +++ b/easybuild/easyconfigs/l/Lmod/README.rst @@ -10,33 +10,28 @@ Howto Assuming you have successfully used the bootstrap procedure of EasyBuild, you should be able to initiate a recursive build of the following bits:: - time eb Lmod-5.8-GCC-4.8.2.eb -r + EASYBUILD_OPTARCH= time eb Lmod-5.8-GCC-4.8.2.eb -r which is going to build the following modules/easyconfigs:: - l/Lmod/Lmod-5.8-GCC-4.8.2.eb ### so, you just aim for this one, with "-r" - l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb - n/ncurses/ncurses-5.9-GCC-4.8.2.eb - g/GCC/GCC-4.8.2.eb + g/GCC/GCC-4.8.2.eb ## if this breaks use: --try-amend=parallel=1 + n/ncurses/ncurses-5.9-GCC-4.8.2.eb ## On MacOSX, this should pick a special patch + l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb ## Lmod is written in Lua, which needs ncurses + l/Lmod/Lmod-5.8-GCC-4.8.2.eb ## Lmod should be built with -r, to build the above -If you are trying this under macosx, take care of the following aspects, as well: +This operation is expected to be the needed substrate to launch you towards Lmod; +Lmod facility gets activated with the `sourceme` script available next to this file:: -- export EASYBUILD_OPTARCH='' -- time eb GCC-4.8.2.eb --try-amend=parallel=1 -- time eb Lmod-5.8-GCC-4.8.2.eb -r ## ncurses should automatically kick a special patch - -This operation is expected to be the needed substrate to launch you towards Lmod, -which gets activated with the `sourceme` script sitting in the same directory:: - - source sourceme ## N.B. it does direct assignments on environment variables; that's intentional + source sourceme ## N.B. direct assignments on environment variables are intentional here Then try:: - ml av ## ie. the Lmod equivalent to `module avail` ; it should just work + ml av ## ie. the Lmod equivalent to `module avail` ; it should just work -If so, now you implemented the better instance of: https://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-17.html +If so, now you implemented the better instance of environment modules implementations: + https://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-17.html Lmod's caching can help to work with *buildsets*; ref. https://fosdem.org/2014/schedule/event/hpc_devroom_hpcbios/ -You should now be able to try alternative Lmod/Lua versions, toggle cache, and so forth. +You should now be able to try alternative Lmod/Lua versions, toggle the cache, and so forth. enjoy, Fotis -- GitLab From 7de418fa703682fea59f8862a436376052e949ac Mon Sep 17 00:00:00 2001 From: pescobar Date: Mon, 27 Oct 2014 09:48:31 +0100 Subject: [PATCH 0093/1217] GATK-3.3-0 with message on load (modloadmsg) for convenience --- .../g/GATK/GATK-3.3-0-Java-1.7.0_21.eb | 42 +++++++++++++++++++ 1 file changed, 42 insertions(+) create mode 100644 easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_21.eb diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_21.eb b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_21.eb new file mode 100644 index 0000000000..065919e6f3 --- /dev/null +++ b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_21.eb @@ -0,0 +1,42 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'Tarball' + +name = 'GATK' +version = '3.3-0' + +homepage = 'http://www.broadinstitute.org/gatk/' +description = """The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute + to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, + with a primary focus on variant discovery and genotyping as well as strong emphasis on + data quality assurance. Its robust architecture, powerful processing engine and + high-performance computing features make it capable of taking on projects of any size.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download manually from http://www.broadinstitute.org/gatk/download +sources = ['GenomeAnalysisTK-%(version)s.tar.bz2'] + +java = 'Java' +javaver = '1.7.0_21' +versionsuffix = '-%s-%s' % (java, javaver) +dependencies = [(java, javaver)] + +modloadmsg = """To execute GATK run: java -jar \\$EBROOTGATK/GenomeAnalysisTK.jar""" + +sanity_check_paths = { + 'files': ["GenomeAnalysisTK.jar"], + 'dirs': ["resources"], +} + +moduleclass = 'bio' -- GitLab From 60a3e170d840522450e9a955bf724ad45dc036ff Mon Sep 17 00:00:00 2001 From: pescobar Date: Mon, 27 Oct 2014 09:51:40 +0100 Subject: [PATCH 0094/1217] added modloadmsg to every GATK easyconfig --- easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb | 2 ++ easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb | 2 ++ easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb | 2 ++ easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb | 2 ++ 4 files changed, 8 insertions(+) diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb index 4c9f63f9c5..4fb3e8bcca 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb @@ -32,6 +32,8 @@ javaver = '1.7.0_10' versionsuffix = '-%s-%s' % (java, javaver) dependencies = [(java, javaver)] +modloadmsg = """To execute GATK run: java -jar \\$EBROOTGATK/GenomeAnalysisTK.jar""" + sanity_check_paths = { 'files': ["GenomeAnalysisTK.jar"], 'dirs': ["resources"], diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb index 833388f606..321a37d995 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb @@ -32,6 +32,8 @@ javaver = '1.7.0_10' versionsuffix = '-%s-%s' % (java, javaver) dependencies = [(java, javaver)] +modloadmsg = """To execute GATK run: java -jar \\$EBROOTGATK/GenomeAnalysisTK.jar""" + sanity_check_paths = { 'files': ["GenomeAnalysisTK.jar"], 'dirs': ["resources"], diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb index c75c22094b..742e8ef2ab 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb @@ -32,6 +32,8 @@ javaver = '1.7.0_10' versionsuffix = '-%s-%s' % (java, javaver) dependencies = [(java, javaver)] +modloadmsg = """To execute GATK run: java -jar \\$EBROOTGATK/GenomeAnalysisTK.jar""" + sanity_check_paths = { 'files': ["GenomeAnalysisTK.jar"], 'dirs': ["resources"], diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb index c3a788ffe2..decbb03ce6 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb @@ -32,6 +32,8 @@ javaver = '1.7.0_10' versionsuffix = '-%s-%s' % (java, javaver) dependencies = [(java, javaver)] +modloadmsg = """To execute GATK run: java -jar \\$EBROOTGATK/GenomeAnalysisTK.jar""" + sanity_check_paths = { 'files': ["GenomeAnalysisTK.jar"], 'dirs': ["resources"], -- GitLab From 21f374883759c2f3647ac4017cac228490d4edb7 Mon Sep 17 00:00:00 2001 From: pescobar Date: Mon, 27 Oct 2014 14:40:54 +0100 Subject: [PATCH 0095/1217] HTSlib-1.1-goolf-1.4.10.eb --- .../h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb | 30 +++++++++++++++++++ 1 file changed, 30 insertions(+) create mode 100644 easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb new file mode 100644 index 0000000000..f47e50d4ba --- /dev/null +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb @@ -0,0 +1,30 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +name = 'HTSlib' +version = '1.1' + +homepage = 'http://www.htslib.org/' +description = """ A C library for reading/writing high-throughput sequencing data """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = [('http://sourceforge.net/projects/samtools/files/samtools/%(version)s', 'download')] +sources = [SOURCELOWER_TAR_BZ2] + +dependencies = [('zlib', '1.2.8')] + +parallel = 1 + +skipsteps = ['configure'] + +installopts = ' prefix=%(installdir)s' + +sanity_check_paths = { + 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.so"], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From fc7b412fec59bf0001bd3970243c20fa7eb03662 Mon Sep 17 00:00:00 2001 From: pescobar Date: Mon, 27 Oct 2014 17:33:01 +0100 Subject: [PATCH 0096/1217] updated SAMtools homepage in every easyconfig --- .../s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb | 2 +- .../easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb | 2 +- .../easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb index f3572478a0..d6663d33b1 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb @@ -13,7 +13,7 @@ name = 'SAMtools' version = '0.1.18' -homepage = 'http://samtools.sourceforge.net/' +homepage = 'http://www.htslib.org/' description = """SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments.""" diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb index 53dcf4ed72..a2fc2259c2 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb @@ -13,7 +13,7 @@ name = 'SAMtools' version = '0.1.18' -homepage = 'http://samtools.sourceforge.net/' +homepage = 'http://www.htslib.org/' description = """SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments.""" diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb index ba1e0ff6dc..aaffefffe9 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb @@ -13,7 +13,7 @@ name = 'SAMtools' version = '0.1.18' -homepage = 'http://samtools.sourceforge.net/' +homepage = 'http://www.htslib.org/' description = """SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments.""" diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb index 28ebd82fc4..f0f0b358c7 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb @@ -13,7 +13,7 @@ name = 'SAMtools' version = '0.1.18' -homepage = 'http://samtools.sourceforge.net/' +homepage = 'http://www.htslib.org/' description = """SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments.""" diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb index 3f46ced5c1..4d64b1da6a 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb @@ -13,7 +13,7 @@ name = 'SAMtools' version = '0.1.19' -homepage = 'http://samtools.sourceforge.net/' +homepage = 'http://www.htslib.org/' description = """SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments.""" diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb index dd1a4bc9dd..d785277f32 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb @@ -13,7 +13,7 @@ name = 'SAMtools' version = '0.1.19' -homepage = 'http://samtools.sourceforge.net/' +homepage = 'http://www.htslib.org/' description = """SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments.""" -- GitLab From 008234b4c4ff2c2acda8f3eab7c60112ff4cf64b Mon Sep 17 00:00:00 2001 From: pescobar Date: Tue, 28 Oct 2014 16:29:30 +0100 Subject: [PATCH 0097/1217] added Java dependencies to EMBOSS easyconfigs --- easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb | 3 ++- easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb | 3 ++- easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb | 3 ++- 3 files changed, 6 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb index d309d40cd6..1d00add803 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb @@ -16,7 +16,8 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['ftp://emboss.open-bio.org/pub/EMBOSS/'] sources = [SOURCE_TAR_GZ] -dependencies = [('libharu', '2.2.0')] +dependencies = [('libharu', '2.2.0'), + ('Java','1.7.0_21', '', True)] configopts = " --with-hpdf=$EBROOTLIBHARU " diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb index c355837e99..55f9ab8798 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb @@ -16,7 +16,8 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} source_urls = ['ftp://emboss.open-bio.org/pub/EMBOSS/'] sources = [SOURCE_TAR_GZ] -dependencies = [('libharu', '2.2.0')] +dependencies = [('libharu', '2.2.0'), + ('Java','1.7.0_21', '', True)] configopts = " --with-hpdf=$EBROOTLIBHARU " diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb index f3398b3949..2561c7e76e 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb @@ -16,7 +16,8 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ['ftp://emboss.open-bio.org/pub/EMBOSS/'] sources = [SOURCE_TAR_GZ] -dependencies = [('libharu', '2.2.0')] +dependencies = [('libharu', '2.2.0'), + ('Java','1.7.0_21', '', True)] configopts = " --with-hpdf=$EBROOTLIBHARU " -- GitLab From 335d67ba84af1b95b34092a8bd158f0dd2f742a9 Mon Sep 17 00:00:00 2001 From: Markus Geimer Date: Tue, 28 Oct 2014 19:23:52 +0100 Subject: [PATCH 0098/1217] Removed unnecessary build dependencies for OpenMPI --- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb | 5 ----- .../easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb | 5 ----- 2 files changed, 10 deletions(-) diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb index f41e67dfe1..941d27e5cf 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb @@ -11,11 +11,6 @@ source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/d patches = ['OpenMPI-%(version)s-vt_cupti_events.patch'] -builddependencies = [ - ('Automake', '1.14'), - ('Autoconf', '2.69'), -] - dependencies = [('hwloc', '1.7.2')] configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb index a89c0a8126..60da7fbf14 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb @@ -11,11 +11,6 @@ source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/d patches = ['OpenMPI-%(version)s-vt_cupti_events.patch'] -builddependencies = [ - ('Automake', '1.14'), - ('Autoconf', '2.69'), -] - dependencies = [('hwloc', '1.8')] configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' -- GitLab From f54b3461eb49746220d79818987948c716920154 Mon Sep 17 00:00:00 2001 From: pescobar Date: Wed, 29 Oct 2014 13:42:57 +0100 Subject: [PATCH 0099/1217] updated description to reflect that tabix utility is now included in this package so "module spider" can find it --- easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb index f47e50d4ba..27ecc64563 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb @@ -7,7 +7,8 @@ name = 'HTSlib' version = '1.1' homepage = 'http://www.htslib.org/' -description = """ A C library for reading/writing high-throughput sequencing data """ +description = """ A C library for reading/writing high-throughput sequencing data. + This package includes the utilities bgzip and tabix """ toolchain = {'name': 'goolf', 'version': '1.4.10'} -- GitLab From e1e1cfc291aa6b1e7cbb35e919d7344508e2bc49 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Thu, 30 Oct 2014 01:31:05 +0100 Subject: [PATCH 0100/1217] add Chapel-1.10.0-* easyconfigs Signed-off-by: Fotis Georgatos --- .../c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb | 48 +++++++++++++++++++ .../c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb | 48 +++++++++++++++++++ 2 files changed, 96 insertions(+) create mode 100644 easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb create mode 100644 easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb new file mode 100644 index 0000000000..eee36e2efc --- /dev/null +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb @@ -0,0 +1,48 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2014 +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +name = 'Chapel' +version = "1.10.0" + +homepage = 'http://chapel.cray.com' +description = """ Chapel is an emerging parallel programming language whose design and development + is being led by Cray Inc. Chapel is designed to improve the productivity of high-end computer users + while also serving as a portable parallel programming model that can be used on commodity clusters + or desktop multicore systems. Chapel strives to vastly improve the programmability of large-scale + parallel computers while matching or beating the performance and portability of current programming + models like MPI.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +unpack_options = '--strip-components=1' + +# parallel build fails +parallel = 1 + +installopts = ' && make check' + +libpath = 'lib/linux64.gnu.arch-native.loc-flat.comm-none.tasks-qthreads.' +libpath += 'tmr-generic.mem-default.atomics-intrinsics.' +libpath += 'gmp.hwloc.re2.wide-struct.fs-none' + +sanity_check_paths = { + 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], + 'dirs': ["."], +} + +modextrapaths = { + 'PATH': 'util', + 'CHPL_HOME': '', +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb new file mode 100644 index 0000000000..9d362c306b --- /dev/null +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb @@ -0,0 +1,48 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2014 +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +name = 'Chapel' +version = "1.10.0" + +homepage = 'http://chapel.cray.com' +description = """ Chapel is an emerging parallel programming language whose design and development + is being led by Cray Inc. Chapel is designed to improve the productivity of high-end computer users + while also serving as a portable parallel programming model that can be used on commodity clusters + or desktop multicore systems. Chapel strives to vastly improve the programmability of large-scale + parallel computers while matching or beating the performance and portability of current programming + models like MPI.""" + +toolchain = {'name': 'goolf', 'version': '1.6.10'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +unpack_options = '--strip-components=1' + +# parallel build fails +parallel = 1 + +installopts = ' && make check' + +libpath = 'lib/linux64.gnu.arch-native.loc-flat.comm-none.tasks-qthreads.' +libpath += 'tmr-generic.mem-default.atomics-intrinsics.' +libpath += 'gmp.hwloc.re2.wide-struct.fs-none' + +sanity_check_paths = { + 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], + 'dirs': ["."], +} + +modextrapaths = { + 'PATH': 'util', + 'CHPL_HOME': '', +} + +moduleclass = 'lang' -- GitLab From 0cecaa9f5d3af01918dd5b9d3bd4e2845ee5258e Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Thu, 30 Oct 2014 01:49:29 +0100 Subject: [PATCH 0101/1217] bug fix of the sanity check Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb | 4 ++-- easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb index eee36e2efc..f8d2902688 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb @@ -32,12 +32,12 @@ parallel = 1 installopts = ' && make check' libpath = 'lib/linux64.gnu.arch-native.loc-flat.comm-none.tasks-qthreads.' -libpath += 'tmr-generic.mem-default.atomics-intrinsics.' +libpath += 'tmr-generic.mem-cstdlib.atomics-intrinsics.' libpath += 'gmp.hwloc.re2.wide-struct.fs-none' sanity_check_paths = { 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], - 'dirs': ["."], + 'dirs': [], } modextrapaths = { diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb index 9d362c306b..f26c22af1f 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb @@ -32,12 +32,12 @@ parallel = 1 installopts = ' && make check' libpath = 'lib/linux64.gnu.arch-native.loc-flat.comm-none.tasks-qthreads.' -libpath += 'tmr-generic.mem-default.atomics-intrinsics.' +libpath += 'tmr-generic.mem-cstdlib.atomics-intrinsics.' libpath += 'gmp.hwloc.re2.wide-struct.fs-none' sanity_check_paths = { 'files': ['bin/linux64/chpl', 'bin/linux64/chpldoc', '%s/libchpl.a' % libpath, '%s/main.o' % libpath], - 'dirs': ["."], + 'dirs': [], } modextrapaths = { -- GitLab From 10b89176abe871364d77a8ddc71dcf830497fd94 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 30 Oct 2014 13:45:52 +0100 Subject: [PATCH 0102/1217] Updated to GCC 4.9.2 --- .../g/GCC/GCC-4.9.2-CLooG-multilib.eb | 45 +++++++++++++++++++ .../easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb | 43 ++++++++++++++++++ easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb | 33 ++++++++++++++ 3 files changed, 121 insertions(+) create mode 100644 easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb create mode 100644 easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb create mode 100644 easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb new file mode 100644 index 0000000000..ed79986b4e --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb @@ -0,0 +1,45 @@ +name = "GCC" +version = '4.9.2' +versionsuffix = "-CLooG-multilib" + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://www.bastoul.net/cloog/pages/download/', # CLooG official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] + +mpfr_version = '3.1.2' + +sources = [ + SOURCELOWER_TAR_BZ2, + 'gmp-6.0.0a.tar.bz2', + 'mpfr-%s.tar.gz' % mpfr_version, + 'mpc-1.0.2.tar.gz', + 'cloog-0.18.1.tar.gz', + 'isl-0.12.2.tar.bz2', +] + +patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] + +languages = ['c', 'c++', 'fortran', 'lto'] + +withcloog = True +withisl = True +clooguseisl = True + +multilib = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb new file mode 100644 index 0000000000..defaf47449 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb @@ -0,0 +1,43 @@ +name = "GCC" +version = '4.9.2' +versionsuffix = "-CLooG" + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://www.bastoul.net/cloog/pages/download/', # CLooG official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] + +mpfr_version = '3.1.2' + +sources = [ + SOURCELOWER_TAR_BZ2, + 'gmp-6.0.0a.tar.bz2', + 'mpfr-%s.tar.gz' % mpfr_version, + 'mpc-1.0.2.tar.gz', + 'cloog-0.18.1.tar.gz', + 'isl-0.12.2.tar.bz2', +] + +patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] + +languages = ['c', 'c++', 'fortran', 'lto'] + +withcloog = True +withisl = True +clooguseisl = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb new file mode 100644 index 0000000000..6761d69754 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb @@ -0,0 +1,33 @@ +name = "GCC" +version = '4.9.2' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official +] + +mpfr_version = '3.1.2' + +sources = [ + SOURCELOWER_TAR_BZ2, + 'gmp-6.0.0a.tar.bz2', + 'mpfr-%s.tar.gz' % mpfr_version, + 'mpc-1.0.2.tar.gz', +] + +patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] + +languages = ['c', 'c++', 'fortran', 'lto'] + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' -- GitLab From f7ea2f305b9de07ada712465a6994c741cce4e93 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Mon, 3 Nov 2014 10:15:02 +0100 Subject: [PATCH 0103/1217] GObject-introspection added for GNOME --- ...Object-Introspection-1.42.0-intel-2014b.eb | 31 +++++++++++++++++++ .../h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb | 8 +++++ .../p/Pango/Pango-1.36-intel-2014b.eb | 6 ++++ 3 files changed, 45 insertions(+) create mode 100644 easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb diff --git a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb new file mode 100644 index 0000000000..a7d8444e44 --- /dev/null +++ b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb @@ -0,0 +1,31 @@ +name = 'GObject-Introspection' +version = '1.42.0' + +homepage = 'https://wiki.gnome.org/GObjectIntrospection/' +description = """GObject introspection is a middleware layer between C libraries + (using GObject) and language bindings. The C library can be scanned at + compile time and generate a metadata file, in addition to the actual + native C library. Then at runtime, language bindings can read this + metadata and automatically provide bindings to call into the C library.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://ftp.gnome.org/pub/gnome/sources/%(namelower)s/%(version_major_minor)s/'] +sources = [SOURCELOWER_TAR_XZ] + +dependencies = [ + ('GLib', '2.40.0'), +] + +sanity_check_paths = { + 'files': ['bin/g-ir-%s' % x for x in ['annotation-tool', 'compiler', 'generate', 'scanner']] + + ['lib/libgirepository-1.0.%s' % x for x in ['so', 'a']], + 'dirs': ['include', 'share'] +} + +modextrapaths = { + 'GI_TYPELIB_PATH': 'share', + 'XDG_DATA_DIRS': 'share', +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb index 347dc8042c..633f72299d 100644 --- a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb +++ b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb @@ -11,13 +11,21 @@ sources = [SOURCELOWER_TAR_BZ2] dependencies = [ ('cairo', '1.12.14'), + ('GObject-Introspection', '1.42.0'), ] patches = ['HarfBuzz-%(version)s_config.patch'] +configopts = '--with-gobject --enable-introspection=yes ' + sanity_check_paths = { 'files': ['lib/libharfbuzz.so', 'bin/hb-view'], 'dirs': [] } +modextrapaths = { + 'GI_TYPELIB_PATH': 'share', + 'XDG_DATA_DIRS': 'share', +} + moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb b/easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb index 35aca8adaa..cef02d6f33 100644 --- a/easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb @@ -19,6 +19,7 @@ dependencies = [ ('freetype', '2.5.3'), ('GLib', '2.40.0'), ('HarfBuzz', '0.9.35'), + ('GObject-Introspection', '1.42.0'), ] builddependencies = [ @@ -31,4 +32,9 @@ sanity_check_paths = { 'dirs': [] } +modextrapaths = { + 'GI_TYPELIB_PATH': 'share', + 'XDG_DATA_DIRS': 'share', +} + moduleclass = 'vis' -- GitLab From dd8aee93b330e1760f6cff80e0a64259651cd609 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 4 Nov 2014 19:18:35 +0100 Subject: [PATCH 0104/1217] update/clean up README --- README.rst | 76 ++++++++++++++++++++++++++++-------------------------- 1 file changed, 40 insertions(+), 36 deletions(-) diff --git a/README.rst b/README.rst index 51eea37653..e515b33943 100644 --- a/README.rst +++ b/README.rst @@ -1,47 +1,51 @@ -Build status - *master branch (Python 2.4, Python 2.6, Python 2.7)* - -.. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python24/badge/icon - :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python24/ -.. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master/badge/icon - :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master/ -.. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python27/badge/icon - :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python27/ - -Build status - *develop branch (Python 2.4, Python 2.6, Python 2.7)* - -.. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop-python24/badge/icon - :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop-python24/ -.. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop/badge/icon - :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop/ -.. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop-python27/badge/icon - :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop-python27/ - EasyBuild: building software with ease -------------------------------------- -The easybuild-easyconfigs package provides a collection of well-tested -example easyconfig files for EasyBuild -(http://hpcugent.github.com/easybuild), a software build and -installation framework written in Python that allows you to install -software in a structured, repeatable and robust way. +.. image:: http://hpcugent.github.io/easybuild/images/easybuild_logo_small.png + :align: center +`EasyBuild `_ is a software build +and installation framework that allows you to manage (scientific) software +on High Performance Computing (HPC) systems in an efficient way. + +The easybuild-easyconfigs package provides a collection of well-tested +example easyconfig files for EasyBuild. Easyconfig files are used to specify which software to build, which version of the software (and its dependencies), which build parameters to use (e.g., which compiler toolchain to use), etc. -The code of the easybuild-easyconfigs package is hosted on GitHub, along +The EasyBuild documentation is available at http://easybuild.readthedocs.org/. + +The easybuild-easyconfigs package is hosted on GitHub, along with an issue tracker for bug reports and feature requests, see http://github.com/hpcugent/easybuild-easyconfigs. -The EasyBuild documentation is available on the GitHub wiki of the -easybuild meta-package, see -http://github.com/hpcugent/easybuild/wiki/Home. - -Related packages: \* easybuild-framework -(http://pypi.python.org/pypi/easybuild-framework): the EasyBuild -framework, which includes the easybuild.framework and easybuild.tools -Python packages that provide general support for building and installing -software \* easybuild-easyblocks -(http://pypi.python.org/pypi/easybuild-easyblocks): a collection of -easyblocks that implement support for building and installing (groups -of) software packages +Related repositories: + +* `easybuild-framework `_: the EasyBuild framework, which includes the ``easybuild.framework`` and ``easybuild.tools`` Python packages that provide general support for building and installing software +* `easybuild-easyblocks `_: a collection of easyblocks that implement support for building and installing (groups of) software packages. + +*Build status overview:* + +* **master** branch *(Python 2.4, Python 2.6, Python 2.7)* + + .. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python24/badge/icon + + :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python24/ + + .. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master/badge/icon + + :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master/ + + .. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python27/badge/icon + + :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python27/ + +* **develop** branch *(Python 2.4, Python 2.6, Python 2.7)* + + .. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop-python24/badge/icon + :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop-python24/ + .. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop/badge/icon + :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop/ + .. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop-python27/badge/icon + :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_develop-python27/ -- GitLab From 69ea1be62778c55aaffdbfd50da39f9acb386990 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 4 Nov 2014 19:21:24 +0100 Subject: [PATCH 0105/1217] cosmetic changes --- README.rst | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.rst b/README.rst index e515b33943..38e6049c3d 100644 --- a/README.rst +++ b/README.rst @@ -8,8 +8,8 @@ EasyBuild: building software with ease and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way. -The easybuild-easyconfigs package provides a collection of well-tested -example easyconfig files for EasyBuild. +The **easybuild-easyconfigs** package provides a collection of well-tested +example *easyconfig files* for EasyBuild. Easyconfig files are used to specify which software to build, which version of the software (and its dependencies), which build parameters to use (e.g., which compiler toolchain to use), etc. -- GitLab From 4399d5994bcc8e7bd9111aeb8c9e91bf4665e0d7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 4 Nov 2014 20:49:08 +0100 Subject: [PATCH 0106/1217] fix description in setup.py, more cosmetics --- README.rst | 19 +++++++++++++------ setup.py | 6 ++---- 2 files changed, 15 insertions(+), 10 deletions(-) diff --git a/README.rst b/README.rst index 38e6049c3d..917eb62491 100644 --- a/README.rst +++ b/README.rst @@ -20,25 +20,32 @@ The easybuild-easyconfigs package is hosted on GitHub, along with an issue tracker for bug reports and feature requests, see http://github.com/hpcugent/easybuild-easyconfigs. -Related repositories: +Related Python packages: -* `easybuild-framework `_: the EasyBuild framework, which includes the ``easybuild.framework`` and ``easybuild.tools`` Python packages that provide general support for building and installing software -* `easybuild-easyblocks `_: a collection of easyblocks that implement support for building and installing (groups of) software packages. +* **easybuild-framework** + + * the EasyBuild framework, which includes the ``easybuild.framework`` and ``easybuild.tools`` Python + packages that provide general support for building and installing software + * GitHub repository: http://github.com/hpcugent/easybuild-framework + * PyPi: https://pypi.python.org/pypi/easybuild-framework + +* **easybuild-easyblocks** + + * a collection of easyblocks that implement support for building and installing (groups of) software packages + * GitHub repository: http://github.com/hpcugent/easybuild-easyblocks + * package on PyPi: https://pypi.python.org/pypi/easybuild-easyblocks *Build status overview:* * **master** branch *(Python 2.4, Python 2.6, Python 2.7)* .. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python24/badge/icon - :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python24/ .. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master/badge/icon - :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master/ .. image:: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python27/badge/icon - :target: https://jenkins1.ugent.be/view/EasyBuild/job/easybuild-easyconfigs_unit-test_hpcugent_master-python27/ * **develop** branch *(Python 2.4, Python 2.6, Python 2.7)* diff --git a/setup.py b/setup.py index 859b055039..9b6a4a2fc6 100644 --- a/setup.py +++ b/setup.py @@ -96,11 +96,9 @@ setup( version = VERSION, author = "EasyBuild community", author_email = "easybuild@lists.ugent.be", - description = """EasyBuild is a software installation framework in Python that allows you to \ -install software in a structured and robust way. -This package contains a collection of easyconfigs, i.e. simple text files written in Python syntax \ + description = """Easyconfig files are simple build specification files for EasyBuild, that specify the build parameters for software packages (version, compiler toolchain, dependency \ -versions, etc.)""", +versions, etc.).""", license = "GPLv2", keywords = "software build building installation installing compilation HPC scientific", url = "http://hpcugent.github.com/easybuild", -- GitLab From 087056b8e6c6b04d5cb0881c9c26c4a988525a8f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 4 Nov 2014 21:00:00 +0100 Subject: [PATCH 0107/1217] drop title in README --- README.rst | 3 --- 1 file changed, 3 deletions(-) diff --git a/README.rst b/README.rst index 917eb62491..becdc63ccb 100644 --- a/README.rst +++ b/README.rst @@ -1,6 +1,3 @@ -EasyBuild: building software with ease --------------------------------------- - .. image:: http://hpcugent.github.io/easybuild/images/easybuild_logo_small.png :align: center -- GitLab From 72ed6add28e84b32e318e96b247c1a65afe294ec Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Fri, 7 Nov 2014 19:24:59 +0000 Subject: [PATCH 0108/1217] Upping the version of Bowtie2 to 2.2.4 with goolf 1.4.10 --- .../b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb | 38 +++++++++++++++++++ 1 file changed, 38 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb new file mode 100644 index 0000000000..49bf289dde --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb @@ -0,0 +1,38 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# Modified by: Robert Schmidt +# Ottawa Hospital Research Institute - Bioinformatics Team + +easyblock='MakeCp' + +name = 'Bowtie2' +version = '2.2.4' + +homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' +description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads + to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s + of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. + Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, + its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = ['%s-%s-source.zip' % (name.lower(), version)] +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] + +files_to_copy = [ + (["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", + "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), + "doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] + +sanity_check_paths = { + 'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"], + 'dirs': [], +} + +# to add script folder to path just uncomment this line +#modextrapaths = {'PATH': 'scripts'} + +moduleclass = 'bio' -- GitLab From 8e7a062c8dc77e60013b49db8d27009a2bb68e4b Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 13 Nov 2014 14:21:00 +0100 Subject: [PATCH 0109/1217] New arpack with new ictce toolchain --- .../arpack-ng-3.1.5-ictce-7.1.2-mt.eb | 21 +++++++++++++++++++ .../arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb | 20 ++++++++++++++++++ 2 files changed, 41 insertions(+) create mode 100644 easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb create mode 100644 easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb new file mode 100644 index 0000000000..bbbddf6ef7 --- /dev/null +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb @@ -0,0 +1,21 @@ +name = 'arpack-ng' +version = '3.1.5' +versionsuffix = '-mt' + +homepage = 'http://forge.scilab.org/index.php/p/arpack-ng/' +description = """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True, 'usempi': False} + +source_urls = ['http://forge.scilab.org/index.php/p/arpack-ng/downloads/get/'] +sources = ['%(name)s_%(version)s.tar.gz'] + +configopts = '--with-pic --with-blas="$LIBBLAS_MT" --with-lapack="$LIBLAPACK_MT"' + +sanity_check_paths = { + 'files': ["lib/libarpack.a", "lib/libarpack.so"], + 'dirs': [] +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb new file mode 100644 index 0000000000..54fdda07da --- /dev/null +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb @@ -0,0 +1,20 @@ +name = 'arpack-ng' +version = '3.1.5' + +homepage = 'http://forge.scilab.org/index.php/p/arpack-ng/' +description = """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True, 'usempi': True} + +source_urls = ['http://forge.scilab.org/index.php/p/arpack-ng/downloads/get/'] +sources = ['%(name)s_%(version)s.tar.gz'] + +configopts = '--with-pic --with-blas="$LIBBLAS_MT" --with-lapack="$LIBLAPACK_MT"' + +sanity_check_paths = { + 'files': ["lib/libarpack.a", "lib/libarpack.so"], + 'dirs': [] +} + +moduleclass = 'numlib' -- GitLab From 3d51ec0eed22b5e562c43dffe43b6aeeca82b051 Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Tue, 18 Nov 2014 19:28:52 +0000 Subject: [PATCH 0110/1217] A new SAMtools 1.1 build --- .../s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb | 35 +++++++ .../s/SAMtools/SAMtools-1.1_Makefile.patch | 94 +++++++++++++++++++ 2 files changed, 129 insertions(+) create mode 100644 easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb create mode 100644 easybuild/easyconfigs/s/SAMtools/SAMtools-1.1_Makefile.patch diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb new file mode 100644 index 0000000000..7cd9d3ebb3 --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb @@ -0,0 +1,35 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'SAMtools' +version = '1.1' + +homepage = 'http://samtools.sourceforge.net/' +description = """ SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [('http://sourceforge.net/projects/samtools/files/%s/%s' % (name.lower(), version), 'download')] + +patches = ['SAMtools-1.1_Makefile.patch'] + +dependencies = [ + ('ncurses', '5.9'), + ('zlib', '1.2.7'), +] + +parallel = 1 + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1_Makefile.patch b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1_Makefile.patch new file mode 100644 index 0000000000..ea4be326bd --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1_Makefile.patch @@ -0,0 +1,94 @@ +diff -ru samtools-1.1.orig/Makefile samtools-1.1/Makefile +--- samtools-1.1.orig/Makefile 2014-09-23 14:44:16.000000000 +0000 ++++ samtools-1.1/Makefile 2014-11-14 19:51:50.025846629 +0000 +@@ -36,9 +36,9 @@ + cut_target.o phase.o bam2depth.o padding.o bedcov.o bamshuf.o \ + faidx.o stats.o stats_isize.o bam_flags.o bam_split.o \ + bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o +-INCLUDES= -I. -I$(HTSDIR) +-LIBCURSES= -lcurses # -lXCurses +- ++INCLUDES= -I$(EBROOTNCURSES)/include -I$(EBROOTZLIB)/include -I. -I$(HTSDIR) ++LIBCURSES= -L$(EBROOTNCURSES)/lib -lcurses # -lXCurses ++ZLIB= -L$(EBROOTZLIB)/lib -lz + prefix = /usr/local + exec_prefix = $(prefix) + bindir = $(exec_prefix)/bin +@@ -122,7 +122,7 @@ + $(AR) -csru $@ $(LOBJS) + + samtools: $(AOBJS) libbam.a $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ $(AOBJS) libbam.a $(HTSLIB) $(LDLIBS) $(LIBCURSES) -lm -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ $(AOBJS) libbam.a $(HTSLIB) $(LDLIBS) $(LIBCURSES) -lm $(ZLIB) + + bam_h = bam.h $(htslib_bgzf_h) $(htslib_sam_h) + bam2bcf_h = bam2bcf.h $(htslib_vcf_h) errmod.h +@@ -193,31 +193,31 @@ + + + test/merge/test_bam_translate: test/merge/test_bam_translate.o test/test.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_bam_translate.o test/test.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_bam_translate.o test/test.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/merge/test_pretty_header: test/merge/test_pretty_header.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_pretty_header.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_pretty_header.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/merge/test_rtrans_build: test/merge/test_rtrans_build.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_rtrans_build.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_rtrans_build.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/merge/test_trans_tbl_init: test/merge/test_trans_tbl_init.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_trans_tbl_init.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_trans_tbl_init.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/split/test_count_rg: test/split/test_count_rg.o test/test.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_count_rg.o test/test.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_count_rg.o test/test.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/split/test_expand_format_string: test/split/test_expand_format_string.o test/test.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_expand_format_string.o test/test.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_expand_format_string.o test/test.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/split/test_filter_header_rg: test/split/test_filter_header_rg.o test/test.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_filter_header_rg.o test/test.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_filter_header_rg.o test/test.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/split/test_parse_args: test/split/test_parse_args.o test/test.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_parse_args.o test/test.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_parse_args.o test/test.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/vcf-miniview: test/vcf-miniview.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/vcf-miniview.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/vcf-miniview.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test_test_h = test/test.h $(htslib_sam_h) + +@@ -236,22 +236,22 @@ + # misc programs + + misc/ace2sam: misc/ace2sam.o +- $(CC) $(LDFLAGS) -o $@ misc/ace2sam.o $(LDLIBS) -lz ++ $(CC) $(LDFLAGS) -o $@ misc/ace2sam.o $(LDLIBS) $(ZLIB) + + misc/maq2sam-short: misc/maq2sam-short.o +- $(CC) $(LDFLAGS) -o $@ misc/maq2sam-short.o $(LDLIBS) -lz ++ $(CC) $(LDFLAGS) -o $@ misc/maq2sam-short.o $(LDLIBS) $(ZLIB) + + misc/maq2sam-long: misc/maq2sam-long.o +- $(CC) $(LDFLAGS) -o $@ misc/maq2sam-long.o $(LDLIBS) -lz ++ $(CC) $(LDFLAGS) -o $@ misc/maq2sam-long.o $(LDLIBS) $(ZLIB) + + misc/md5fa: misc/md5fa.o misc/md5.o +- $(CC) $(LDFLAGS) -o $@ misc/md5fa.o misc/md5.o $(LDLIBS) -lz ++ $(CC) $(LDFLAGS) -o $@ misc/md5fa.o misc/md5.o $(LDLIBS) $(ZLIB) + + misc/md5sum-lite: misc/md5sum-lite.o + $(CC) $(LDFLAGS) -o $@ misc/md5sum-lite.o $(LDLIBS) + + misc/wgsim: misc/wgsim.o +- $(CC) $(LDFLAGS) -o $@ misc/wgsim.o $(LDLIBS) -lm -lz ++ $(CC) $(LDFLAGS) -o $@ misc/wgsim.o $(LDLIBS) -lm $(ZLIB) + + misc/ace2sam.o: misc/ace2sam.c $(HTSDIR)/htslib/kstring.h $(HTSDIR)/htslib/kseq.h + misc/md5.o: misc/md5.c misc/md5.h -- GitLab From bfb433a12172170822c09a2932509dbe97205ff0 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 20 Nov 2014 20:28:06 +0100 Subject: [PATCH 0111/1217] add easyconfig for SAMtools w/ intel/2014b --- .../s/SAMtools/SAMtools-1.1-intel-2014b.eb | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb new file mode 100644 index 0000000000..429fdeca0a --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb @@ -0,0 +1,35 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'SAMtools' +version = '1.1' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [SOURCEFORGE_SOURCE] + +patches = ['SAMtools-1.1_Makefile.patch'] + +dependencies = [ + ('ncurses', '5.9'), + ('zlib', '1.2.7'), +] + +parallel = 1 + +moduleclass = 'bio' -- GitLab From 946e5e9c566489711076e6270fefa7cb61ffb618 Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Fri, 21 Nov 2014 16:36:16 +0000 Subject: [PATCH 0112/1217] just a version bump to match the intel rather than using goolf --- .../s/SAMtools/SAMtools-1.1-foss-2014b.eb | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb new file mode 100644 index 0000000000..8369dcd72c --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb @@ -0,0 +1,35 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'SAMtools' +version = '1.1' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [SOURCEFORGE_SOURCE] + +patches = ['SAMtools-1.1_Makefile.patch'] + +dependencies = [ + ('ncurses', '5.9'), + ('zlib', '1.2.7'), +] + +parallel = 1 + +moduleclass = 'bio' -- GitLab From 01c38bb737fbd7829fcba56cb4f3017798df852e Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Fri, 21 Nov 2014 18:47:02 +0000 Subject: [PATCH 0113/1217] bumping zlib versions --- easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb | 6 ++---- .../easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb | 2 +- 2 files changed, 3 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb index 8369dcd72c..74c52d795b 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb @@ -2,12 +2,10 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Robert Schmidt ,Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## name = 'SAMtools' @@ -27,7 +25,7 @@ patches = ['SAMtools-1.1_Makefile.patch'] dependencies = [ ('ncurses', '5.9'), - ('zlib', '1.2.7'), + ('zlib', '1.2.8'), ] parallel = 1 diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb index 429fdeca0a..7512878824 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb @@ -27,7 +27,7 @@ patches = ['SAMtools-1.1_Makefile.patch'] dependencies = [ ('ncurses', '5.9'), - ('zlib', '1.2.7'), + ('zlib', '1.2.8'), ] parallel = 1 -- GitLab From c81a1e905e6e8952c55c9cfb410b3e166ed8828a Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Fri, 21 Nov 2014 19:26:41 -0500 Subject: [PATCH 0114/1217] Somehow a line got repeated Probably won't cause problems, but clearly a bug. --- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb index 5e502a99be..47030a907e 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb @@ -26,7 +26,6 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_mpifh", - "mpi", "ompitrace", "open-pal", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + -- GitLab From be795472e2ad72ed231d79ee441345ca277cc2eb Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Tue, 25 Nov 2014 19:49:02 +0000 Subject: [PATCH 0115/1217] just removing a duplicate line --- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb index 941d27e5cf..c22cb6257c 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb @@ -28,7 +28,6 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_mpifh", - "mpi", "ompitrace", "open-pal", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + -- GitLab From e76608da0af808061cef49f1ebbe8bad9d09b670 Mon Sep 17 00:00:00 2001 From: Tru Huynh Date: Thu, 27 Nov 2014 12:24:51 +0100 Subject: [PATCH 0116/1217] bug_fix_permissions_consistency.take.3 --- easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb | 0 easybuild/easyconfigs/d/DB/DB-2.7.7-ictce-5.5.0.eb | 0 easybuild/easyconfigs/d/DB/DB-4.7.25-goolf-1.4.10.eb | 0 easybuild/easyconfigs/d/DB/DB-4.7.25-ictce-4.1.13.eb | 0 easybuild/easyconfigs/d/DB/DB-6.0.20-ictce-4.1.13.eb | 0 easybuild/easyconfigs/i/icc/icc-2013_sp1.3.174.eb | 0 easybuild/easyconfigs/i/ifort/ifort-2013_sp1.3.174.eb | 0 easybuild/easyconfigs/i/imkl/imkl-11.1.3.174-iimpi-6.3.5.eb | 0 easybuild/easyconfigs/i/imkl/imkl-11.1.3.174.eb | 0 .../easyconfigs/l/libpciaccess/libpciaccess-0.13.1-GCC-4.7.2.eb | 0 easybuild/easyconfigs/n/NAMD/NAMD-2.10b1-ictce-5.5.0-ibverbs.eb | 0 easybuild/easyconfigs/n/NAMD/NAMD-2.10b1-ictce-5.5.0-mpi.eb | 0 easybuild/easyconfigs/n/NAMD/NAMD-2.9-gmvapich2-1.7.12-ibverbs.eb | 0 easybuild/easyconfigs/n/NAMD/NAMD-2.9-gmvolf-1.7.12-ibverbs.eb | 0 easybuild/easyconfigs/n/NAMD/NAMD-2.9-goolf-1.4.10-ibverbs.eb | 0 easybuild/easyconfigs/n/NAMD/NAMD-2.9-ictce-5.5.0-ibverbs.eb | 0 easybuild/easyconfigs/n/NAMD/NAMD-2.9-ictce-5.5.0-mpi.eb | 0 easybuild/easyconfigs/q/Qt/Qt-4.8.5-ictce-4.1.13.eb | 0 easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-goolf-1.4.10.eb | 0 easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-ictce-5.3.0.eb | 0 easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-ictce-5.5.0.eb | 0 easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-goolf-1.4.10.eb | 0 easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-ictce-5.3.0.eb | 0 easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-ictce-5.5.0.eb | 0 easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-GCC-4.7.2.eb | 0 25 files changed, 0 insertions(+), 0 deletions(-) mode change 100755 => 100644 easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb mode change 100755 => 100644 easybuild/easyconfigs/d/DB/DB-2.7.7-ictce-5.5.0.eb mode change 100755 => 100644 easybuild/easyconfigs/d/DB/DB-4.7.25-goolf-1.4.10.eb mode change 100755 => 100644 easybuild/easyconfigs/d/DB/DB-4.7.25-ictce-4.1.13.eb mode change 100755 => 100644 easybuild/easyconfigs/d/DB/DB-6.0.20-ictce-4.1.13.eb mode change 100755 => 100644 easybuild/easyconfigs/i/icc/icc-2013_sp1.3.174.eb mode change 100755 => 100644 easybuild/easyconfigs/i/ifort/ifort-2013_sp1.3.174.eb mode change 100755 => 100644 easybuild/easyconfigs/i/imkl/imkl-11.1.3.174-iimpi-6.3.5.eb mode change 100755 => 100644 easybuild/easyconfigs/i/imkl/imkl-11.1.3.174.eb mode change 100755 => 100644 easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-GCC-4.7.2.eb mode change 100755 => 100644 easybuild/easyconfigs/n/NAMD/NAMD-2.10b1-ictce-5.5.0-ibverbs.eb mode change 100755 => 100644 easybuild/easyconfigs/n/NAMD/NAMD-2.10b1-ictce-5.5.0-mpi.eb mode change 100755 => 100644 easybuild/easyconfigs/n/NAMD/NAMD-2.9-gmvapich2-1.7.12-ibverbs.eb mode change 100755 => 100644 easybuild/easyconfigs/n/NAMD/NAMD-2.9-gmvolf-1.7.12-ibverbs.eb mode change 100755 => 100644 easybuild/easyconfigs/n/NAMD/NAMD-2.9-goolf-1.4.10-ibverbs.eb mode change 100755 => 100644 easybuild/easyconfigs/n/NAMD/NAMD-2.9-ictce-5.5.0-ibverbs.eb mode change 100755 => 100644 easybuild/easyconfigs/n/NAMD/NAMD-2.9-ictce-5.5.0-mpi.eb mode change 100755 => 100644 easybuild/easyconfigs/q/Qt/Qt-4.8.5-ictce-4.1.13.eb mode change 100755 => 100644 easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-goolf-1.4.10.eb mode change 100755 => 100644 easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-ictce-5.3.0.eb mode change 100755 => 100644 easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-ictce-5.5.0.eb mode change 100755 => 100644 easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-goolf-1.4.10.eb mode change 100755 => 100644 easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-ictce-5.3.0.eb mode change 100755 => 100644 easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-ictce-5.5.0.eb mode change 100755 => 100644 easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-GCC-4.7.2.eb diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/d/DB/DB-2.7.7-ictce-5.5.0.eb b/easybuild/easyconfigs/d/DB/DB-2.7.7-ictce-5.5.0.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/d/DB/DB-4.7.25-goolf-1.4.10.eb b/easybuild/easyconfigs/d/DB/DB-4.7.25-goolf-1.4.10.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/d/DB/DB-4.7.25-ictce-4.1.13.eb b/easybuild/easyconfigs/d/DB/DB-4.7.25-ictce-4.1.13.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/d/DB/DB-6.0.20-ictce-4.1.13.eb b/easybuild/easyconfigs/d/DB/DB-6.0.20-ictce-4.1.13.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/i/icc/icc-2013_sp1.3.174.eb b/easybuild/easyconfigs/i/icc/icc-2013_sp1.3.174.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.3.174.eb b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.3.174.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.3.174-iimpi-6.3.5.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.3.174-iimpi-6.3.5.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.3.174.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.3.174.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-GCC-4.7.2.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-GCC-4.7.2.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/n/NAMD/NAMD-2.10b1-ictce-5.5.0-ibverbs.eb b/easybuild/easyconfigs/n/NAMD/NAMD-2.10b1-ictce-5.5.0-ibverbs.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/n/NAMD/NAMD-2.10b1-ictce-5.5.0-mpi.eb b/easybuild/easyconfigs/n/NAMD/NAMD-2.10b1-ictce-5.5.0-mpi.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/n/NAMD/NAMD-2.9-gmvapich2-1.7.12-ibverbs.eb b/easybuild/easyconfigs/n/NAMD/NAMD-2.9-gmvapich2-1.7.12-ibverbs.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/n/NAMD/NAMD-2.9-gmvolf-1.7.12-ibverbs.eb b/easybuild/easyconfigs/n/NAMD/NAMD-2.9-gmvolf-1.7.12-ibverbs.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/n/NAMD/NAMD-2.9-goolf-1.4.10-ibverbs.eb b/easybuild/easyconfigs/n/NAMD/NAMD-2.9-goolf-1.4.10-ibverbs.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/n/NAMD/NAMD-2.9-ictce-5.5.0-ibverbs.eb b/easybuild/easyconfigs/n/NAMD/NAMD-2.9-ictce-5.5.0-ibverbs.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/n/NAMD/NAMD-2.9-ictce-5.5.0-mpi.eb b/easybuild/easyconfigs/n/NAMD/NAMD-2.9-ictce-5.5.0-mpi.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.5-ictce-4.1.13.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.5-ictce-4.1.13.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-goolf-1.4.10.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-ictce-5.3.0.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0a-ictce-5.5.0.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-goolf-1.4.10.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-ictce-5.3.0.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SPRNG/SPRNG-2.0b-ictce-5.5.0.eb old mode 100755 new mode 100644 diff --git a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-GCC-4.7.2.eb b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-GCC-4.7.2.eb old mode 100755 new mode 100644 -- GitLab From c1f05a254c502d7865daac489ccb6e98a196b706 Mon Sep 17 00:00:00 2001 From: Andy Georges Date: Thu, 27 Nov 2014 13:18:38 +0100 Subject: [PATCH 0117/1217] Support for GHC 7.8.3 --- .../g/GHC/GHC-7.8.3-goalf-1.1.0-no-OFED.eb | 44 +++++++++++++++++++ .../g/GHC/GHC-7.8.3-goolf-1.4.10.eb | 44 +++++++++++++++++++ 2 files changed, 88 insertions(+) create mode 100644 easybuild/easyconfigs/g/GHC/GHC-7.8.3-goalf-1.1.0-no-OFED.eb create mode 100644 easybuild/easyconfigs/g/GHC/GHC-7.8.3-goolf-1.4.10.eb diff --git a/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goalf-1.1.0-no-OFED.eb new file mode 100644 index 0000000000..3323ecebdb --- /dev/null +++ b/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goalf-1.1.0-no-OFED.eb @@ -0,0 +1,44 @@ +name = 'GHC' +version = '7.8.3' + +homepage = 'http://www.haskell.org/ghc' +description = """GHC is the Glasgow Haskell Compiler.""" +toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} + +sources = ['%s-%s-src.tar.bz2' % (name.lower(), version)] +source_urls = ['http://www.haskell.org/ghc/dist/%s/' % version] + +dependencies = [ + ('GMP', '5.0.5'), + ('zlib', '1.2.7'), + ('ncurses', '5.9'), +] + +builddependencies = [ + ('GHC', '7.4.2'), + ('libxslt', '1.1.28'), +] + +configopts = " --enable-error-on-warning=no" + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in + ['ghc', + 'ghc-7.8.3', + 'ghci', + 'ghci-7.8.3', + 'ghc-pkg', + 'ghc-pkg-7.8.3', + 'haddock', + 'haddock-ghc-7.8.3', + 'hp2ps', + 'hpc', + 'hsc2hs', + 'runghc', + 'runghc-7.8.3', + 'runhaskell']] + + [], + 'dirs':[] + } + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goolf-1.4.10.eb new file mode 100644 index 0000000000..7d9830c026 --- /dev/null +++ b/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goolf-1.4.10.eb @@ -0,0 +1,44 @@ +name = 'GHC' +version = '7.8.3' + +homepage = 'http://www.haskell.org/ghc' +description = """GHC is the Glasgow Haskell Compiler.""" +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = ['%s-%s-src.tar.bz2' % (name.lower(), version)] +source_urls = ['http://www.haskell.org/ghc/dist/%s/' % version] + +dependencies = [ + ('GMP', '5.0.5'), + ('zlib', '1.2.7'), + ('ncurses', '5.9'), +] + +builddependencies = [ + ('GHC', '7.4.2'), + ('libxslt', '1.1.28'), +] + +configopts = " --enable-error-on-warning=no" + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in + ['ghc', + 'ghc-7.8.3', + 'ghci', + 'ghci-7.8.3', + 'ghc-pkg', + 'ghc-pkg-7.8.3', + 'haddock', + 'haddock-ghc-7.8.3', + 'hp2ps', + 'hpc', + 'hsc2hs', + 'runghc', + 'runghc-7.8.3', + 'runhaskell']] + + [], + 'dirs':[] + } + +moduleclass = 'compiler' -- GitLab From 0375219335f7295ab5cc04b19c8ea2f9bd7b76af Mon Sep 17 00:00:00 2001 From: "Balazs Hajgato (hajgato@ulb.ac.be)" Date: Fri, 28 Nov 2014 11:19:50 +0100 Subject: [PATCH 0118/1217] Bison dependency added --- .../easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb b/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb index 91e668da5d..13ce6a0018 100644 --- a/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb +++ b/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb @@ -19,6 +19,8 @@ prebuildopts = 'cd krb5-%(version)s/src && ' preinstallopts = 'cd krb5-%(version)s/src && ' +builddependencies = [('Bison', '3.0.2')] + sanity_check_paths = { 'files': ['bin/krb5-config', 'bin/gss-client', 'bin/kadmin', 'sbin/kdb5_util', 'sbin/gss-server', 'sbin/kadmind', -- GitLab From f0c717b06f53168045a3f63e054aead92094fdcf Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 28 Nov 2014 13:28:49 +0100 Subject: [PATCH 0119/1217] Add HDF5 for ictce 7.1.2 --- .../h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb | 27 +++++++++++++++++++ .../h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb | 26 ++++++++++++++++++ 2 files changed, 53 insertions(+) create mode 100644 easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb create mode 100644 easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb new file mode 100644 index 0000000000..e0eacc6b4c --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb @@ -0,0 +1,27 @@ +name = 'HDF5' +version = '1.8.14' +versionsuffix = '-serial' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5-1.8.13_configure_intel.patch', + 'configure_libtool.patch', +] + +makeopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' + +dependencies = [ + ('zlib', '1.2.8'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb new file mode 100644 index 0000000000..fedcba1649 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb @@ -0,0 +1,26 @@ +name = 'HDF5' +version = '1.8.14' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5-%(version)s_configure_intel.patch', + 'configure_libtool.patch', +] + +makeopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' + +dependencies = [ + ('zlib', '1.2.8'), + ('Szip', '2.1'), +] + +moduleclass = 'data' -- GitLab From 25f3cf9a434f8590ebb17786d53e3db8bd53f87c Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 28 Nov 2014 13:32:49 +0100 Subject: [PATCH 0120/1217] Fix patch filename --- easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb index fedcba1649..029de071fa 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb @@ -12,7 +12,7 @@ source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] patches = [ - 'HDF5-%(version)s_configure_intel.patch', + 'HDF5-1.8.13_configure_intel.patch', 'configure_libtool.patch', ] -- GitLab From f12be5fdc9ccd32782b7f3ad8104f65b57505df9 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 28 Nov 2014 13:36:05 +0100 Subject: [PATCH 0121/1217] HDF5: fix missing dep --- .../s/Szip/Szip-2.1-ictce-7.1.2.eb | 21 +++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb new file mode 100644 index 0000000000..aeb0249154 --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb @@ -0,0 +1,21 @@ +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.so"] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' -- GitLab From b718069a51edfaf48319d00bba42d5d6bdd56d61 Mon Sep 17 00:00:00 2001 From: Tru Huynh Date: Fri, 28 Nov 2014 22:03:57 +0100 Subject: [PATCH 0122/1217] initial support for Intel 2013_sp1 update 4/intel-2013_sp1.4.211 --- .../hwloc-1.9-iccifort-2013_sp1.4.211.eb | 19 +++++++++++++++ .../easyconfigs/i/icc/icc-2013_sp1.4.211.eb | 20 ++++++++++++++++ .../i/iccifort/iccifort-2013_sp1.4.211.eb | 18 +++++++++++++++ .../i/ifort/ifort-2013_sp1.4.211.eb | 20 ++++++++++++++++ .../i/imkl/imkl-11.1.4.211-iompi-6.6.4.eb | 23 +++++++++++++++++++ .../i/iompi/iompi-6.6.4-no-OFED.eb | 23 +++++++++++++++++++ easybuild/easyconfigs/i/iompi/iompi-6.6.4.eb | 22 ++++++++++++++++++ 7 files changed, 145 insertions(+) create mode 100644 easybuild/easyconfigs/h/hwloc/hwloc-1.9-iccifort-2013_sp1.4.211.eb create mode 100644 easybuild/easyconfigs/i/icc/icc-2013_sp1.4.211.eb create mode 100644 easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.4.211.eb create mode 100644 easybuild/easyconfigs/i/ifort/ifort-2013_sp1.4.211.eb create mode 100644 easybuild/easyconfigs/i/imkl/imkl-11.1.4.211-iompi-6.6.4.eb create mode 100644 easybuild/easyconfigs/i/iompi/iompi-6.6.4-no-OFED.eb create mode 100644 easybuild/easyconfigs/i/iompi/iompi-6.6.4.eb diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.9-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.9-iccifort-2013_sp1.4.211.eb new file mode 100644 index 0000000000..a40a4c8053 --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.9-iccifort-2013_sp1.4.211.eb @@ -0,0 +1,19 @@ +# Built with EasyBuild version 1.15.2 on 2014-11-26_14-48-19 +name = 'hwloc' +version = '1.9' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'iccifort', 'version': '2013_sp1.4.211'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'system' + diff --git a/easybuild/easyconfigs/i/icc/icc-2013_sp1.4.211.eb b/easybuild/easyconfigs/i/icc/icc-2013_sp1.4.211.eb new file mode 100644 index 0000000000..f375c6b518 --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2013_sp1.4.211.eb @@ -0,0 +1,20 @@ +# Built with EasyBuild version 1.15.2 on 2014-11-26_14-41-50 +name = 'icc' +version = '2013_sp1.4.211' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_ccompxe_%(version)s.tgz'] + +# compiler class +moduleclass = 'compiler' + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.4.211.eb new file mode 100644 index 0000000000..767174222a --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.4.211.eb @@ -0,0 +1,18 @@ +# Built with EasyBuild version 1.15.2 on 2014-11-26_14-44-42 +easyblock = "Toolchain" + +name = 'iccifort' +version = '2013_sp1.4.211' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.4.211.eb new file mode 100644 index 0000000000..e3dcbcdd25 --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.4.211.eb @@ -0,0 +1,20 @@ +# Built with EasyBuild version 1.15.2 on 2014-11-26_14-44-41 +name = 'ifort' +version = '2013_sp1.4.211' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_fcompxe_%(version)s.tgz'] + +# compiler class +moduleclass = 'compiler' + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.4.211-iompi-6.6.4.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.4.211-iompi-6.6.4.eb new file mode 100644 index 0000000000..c7ad8e1fbd --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.4.211-iompi-6.6.4.eb @@ -0,0 +1,23 @@ +# Built with EasyBuild version 1.15.2 on 2014-11-26_23-29-25 +name = 'imkl' +version = '11.1.4.211' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines +for science, engineering, and financial applications that require maximum performance. Core math functions include +BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iompi', 'version': '6.6.4'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' + diff --git a/easybuild/easyconfigs/i/iompi/iompi-6.6.4-no-OFED.eb b/easybuild/easyconfigs/i/iompi/iompi-6.6.4-no-OFED.eb new file mode 100644 index 0000000000..091224afc0 --- /dev/null +++ b/easybuild/easyconfigs/i/iompi/iompi-6.6.4-no-OFED.eb @@ -0,0 +1,23 @@ +# Built with EasyBuild version 1.15.2 on 2014-11-27_12-00-26 +easyblock = "Toolchain" + +name = 'iompi' +version = '6.6.4' +versionsuffix = '-no-OFED' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Toolchain with Intel C, C++ and Fortran compilers, alongside OpenMPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2013_sp1.4.211' +comp = ('iccifort', compver) + +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('OpenMPI', '1.6.5', versionsuffix, comp), +] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/i/iompi/iompi-6.6.4.eb b/easybuild/easyconfigs/i/iompi/iompi-6.6.4.eb new file mode 100644 index 0000000000..8dccca825e --- /dev/null +++ b/easybuild/easyconfigs/i/iompi/iompi-6.6.4.eb @@ -0,0 +1,22 @@ +# Built with EasyBuild version 1.15.2 on 2014-11-26_21-36-35 +easyblock = "Toolchain" + +name = 'iompi' +version = '6.6.4' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Toolchain with Intel C, C++ and Fortran compilers, alongside OpenMPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2013_sp1.4.211' +comp = ('iccifort', compver) + +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('OpenMPI', '1.6.5', '', comp), +] + +moduleclass = 'toolchain' + -- GitLab From b45b6d50221180acad416edf17153ee679a17e37 Mon Sep 17 00:00:00 2001 From: Tru Huynh Date: Fri, 28 Nov 2014 22:19:25 +0100 Subject: [PATCH 0123/1217] missing OpenMPI with hwloc 1.9 --- ...I-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb | 34 +++++++++++++++++ .../OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb | 38 +++++++++++++++++++ ...I-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb | 33 ++++++++++++++++ .../OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb | 37 ++++++++++++++++++ 4 files changed, 142 insertions(+) create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb new file mode 100644 index 0000000000..f080d8cdf4 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb @@ -0,0 +1,34 @@ +# Built with EasyBuild version 1.15.2 on 2014-11-26_19-40-34 +name = 'OpenMPI' +version = '1.6.5' +versionsuffix = '-no-OFED' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'iccifort', 'version': '2013_sp1.4.211'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --without-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support + +dependencies = [('hwloc', '1.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mca_common_sm", "mpi_cxx", + "mpi_f77", "mpi_f90", + "mpi", "ompitrace", "open-pal", + "otfaux", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-common", "mpif-config", "mpif", + "mpif-mpi-io", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb new file mode 100644 index 0000000000..da5ae78308 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb @@ -0,0 +1,38 @@ +name = 'OpenMPI' +version = '1.6.5' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'iccifort', 'version': '2013_sp1.4.211'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support + +dependencies = [('hwloc', '1.9')] + +# needed for --with-openib +if OS_NAME in ['debian', 'ubuntu']: + osdependencies = ['libibverbs-dev'] +else: + # OK for OS_NAME == redhat, fedora, RHEL, SL, centos + osdependencies = ['libibverbs-devel'] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mca_common_sm", "mpi_cxx", + "mpi_f77", "mpi_f90", + "mpi", "ompitrace", "open-pal", + "otfaux", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-common", "mpif-config", "mpif", + "mpif-mpi-io", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb new file mode 100644 index 0000000000..0ed7516048 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb @@ -0,0 +1,33 @@ +# Built with EasyBuild version 1.15.2 on 2014-11-26_14-55-01 +name = 'OpenMPI' +version = '1.8.3' +versionsuffix = '-no-OFED' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'iccifort', 'version': '2013_sp1.4.211'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --without-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +dependencies = [('hwloc', '1.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_mpifh", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb new file mode 100644 index 0000000000..bce53677ed --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb @@ -0,0 +1,37 @@ +name = 'OpenMPI' +version = '1.8.3' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'iccifort', 'version': '2013_sp1.4.211'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +dependencies = [('hwloc', '1.9')] + +# needed for --with-openib +if OS_NAME in ['debian', 'ubuntu']: + osdependencies = ['libibverbs-dev'] +else: + # OK for OS_NAME == redhat, fedora, RHEL, SL, centos + osdependencies = ['libibverbs-devel'] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_mpifh", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' -- GitLab From ba0cd8dfc67b6e4779f2ed179922ea4d2f4d62f4 Mon Sep 17 00:00:00 2001 From: Markus Geimer Date: Sun, 30 Nov 2014 14:43:03 +0100 Subject: [PATCH 0124/1217] Rename/relocate MPICH2-3.0.4-GCC-4.8.1.eb * new name: MPICH-3.0.4-GCC-4.8.1.eb * adjust software name accordingly --- .../MPICH-3.0.4-GCC-4.8.1.eb} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/m/{MPICH2/MPICH2-3.0.4-GCC-4.8.1.eb => MPICH/MPICH-3.0.4-GCC-4.8.1.eb} (98%) diff --git a/easybuild/easyconfigs/m/MPICH2/MPICH2-3.0.4-GCC-4.8.1.eb b/easybuild/easyconfigs/m/MPICH/MPICH-3.0.4-GCC-4.8.1.eb similarity index 98% rename from easybuild/easyconfigs/m/MPICH2/MPICH2-3.0.4-GCC-4.8.1.eb rename to easybuild/easyconfigs/m/MPICH/MPICH-3.0.4-GCC-4.8.1.eb index bccfcd087b..82ce9a703a 100644 --- a/easybuild/easyconfigs/m/MPICH2/MPICH2-3.0.4-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/m/MPICH/MPICH-3.0.4-GCC-4.8.1.eb @@ -1,4 +1,4 @@ -name = 'MPICH2' +name = 'MPICH' version = '3.0.4' homepage = 'http://www.mpich.org/' -- GitLab From 9b87b3bf5c9b1732fbbeeee79699f6c1a6e9d133 Mon Sep 17 00:00:00 2001 From: Markus Geimer Date: Sun, 30 Nov 2014 14:47:47 +0100 Subject: [PATCH 0125/1217] Rename/relocate gmpich2-1.4.8.eb * new name: gmpich-1.4.8.eb * adjust dependencies accordingly --- .../g/{gmpich2/gmpich2-1.4.8.eb => gmpich/gmpich-1.4.8.eb} | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) rename easybuild/easyconfigs/g/{gmpich2/gmpich2-1.4.8.eb => gmpich/gmpich-1.4.8.eb} (83%) diff --git a/easybuild/easyconfigs/g/gmpich2/gmpich2-1.4.8.eb b/easybuild/easyconfigs/g/gmpich/gmpich-1.4.8.eb similarity index 83% rename from easybuild/easyconfigs/g/gmpich2/gmpich2-1.4.8.eb rename to easybuild/easyconfigs/g/gmpich/gmpich-1.4.8.eb index 7aaac2970c..6e078643e7 100644 --- a/easybuild/easyconfigs/g/gmpich2/gmpich2-1.4.8.eb +++ b/easybuild/easyconfigs/g/gmpich/gmpich-1.4.8.eb @@ -1,11 +1,11 @@ easyblock = "Toolchain" -name = 'gmpich2' +name = 'gmpich' version = '1.4.8' homepage = '(none)' description = """gcc and GFortran based compiler toolchain, - including MPICH2 for MPI support.""" + including MPICH for MPI support.""" toolchain = {'name': 'dummy', 'version': 'dummy'} @@ -13,7 +13,7 @@ compname = 'GCC' compver = '4.8.1' comp = (compname, compver) -mpilib = 'MPICH2' +mpilib = 'MPICH' mpiver = '3.0.4' # compiler toolchain depencies -- GitLab From c20679c1e669f7ef252e9311aa617ef5e4df76cf Mon Sep 17 00:00:00 2001 From: Markus Geimer Date: Sun, 30 Nov 2014 15:00:07 +0100 Subject: [PATCH 0126/1217] Rename LAPACK-3.4.2-gmpich2-1.4.8.eb * new name: LAPACK-3.4.2-gmpich-1.4.8.eb * adjust toolchain accordingly --- ...PACK-3.4.2-gmpich2-1.4.8.eb => LAPACK-3.4.2-gmpich-1.4.8.eb} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/l/LAPACK/{LAPACK-3.4.2-gmpich2-1.4.8.eb => LAPACK-3.4.2-gmpich-1.4.8.eb} (89%) diff --git a/easybuild/easyconfigs/l/LAPACK/LAPACK-3.4.2-gmpich2-1.4.8.eb b/easybuild/easyconfigs/l/LAPACK/LAPACK-3.4.2-gmpich-1.4.8.eb similarity index 89% rename from easybuild/easyconfigs/l/LAPACK/LAPACK-3.4.2-gmpich2-1.4.8.eb rename to easybuild/easyconfigs/l/LAPACK/LAPACK-3.4.2-gmpich-1.4.8.eb index b8517be37b..ea4670125d 100644 --- a/easybuild/easyconfigs/l/LAPACK/LAPACK-3.4.2-gmpich2-1.4.8.eb +++ b/easybuild/easyconfigs/l/LAPACK/LAPACK-3.4.2-gmpich-1.4.8.eb @@ -6,7 +6,7 @@ description = """LAPACK is written in Fortran90 and provides routines for solvin simultaneous linear equations, least-squares solutions of linear systems of equations, eigenvalue problems, and singular value problems.""" -toolchain = {'name': 'gmpich2', 'version': '1.4.8'} +toolchain = {'name': 'gmpich', 'version': '1.4.8'} toolchainopts = {'pic': True} sources = [SOURCELOWER_TGZ] -- GitLab From 9133fca29bf18eedee19c893e81a2a3e6b17480e Mon Sep 17 00:00:00 2001 From: Markus Geimer Date: Sun, 30 Nov 2014 15:46:56 +0100 Subject: [PATCH 0127/1217] Rename OpenBLAS-0.2.6-gmpich2-1.4.8-LAPACK-3.4.2.eb * new name: OpenBLAS-0.2.6-gmpich-1.4.8-LAPACK-3.4.2.eb * adjust toolchain accordingly --- ...ACK-3.4.2.eb => OpenBLAS-0.2.6-gmpich-1.4.8-LAPACK-3.4.2.eb} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/o/OpenBLAS/{OpenBLAS-0.2.6-gmpich2-1.4.8-LAPACK-3.4.2.eb => OpenBLAS-0.2.6-gmpich-1.4.8-LAPACK-3.4.2.eb} (96%) diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich2-1.4.8-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich-1.4.8-LAPACK-3.4.2.eb similarity index 96% rename from easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich2-1.4.8-LAPACK-3.4.2.eb rename to easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich-1.4.8-LAPACK-3.4.2.eb index 0d976a3941..d0d162d48e 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich2-1.4.8-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich-1.4.8-LAPACK-3.4.2.eb @@ -7,7 +7,7 @@ versionsuffix = '-LAPACK-%s' % lapackver homepage = 'http://xianyi.github.com/OpenBLAS/' description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" -toolchain = {'name': 'gmpich2', 'version': '1.4.8'} +toolchain = {'name': 'gmpich', 'version': '1.4.8'} lapack_src = 'lapack-%s.tgz' % lapackver large_src = 'large.tgz' -- GitLab From 71873c16d6a0f940e4fff99ef237ae77a04b054a Mon Sep 17 00:00:00 2001 From: Markus Geimer Date: Sun, 30 Nov 2014 15:53:59 +0100 Subject: [PATCH 0128/1217] Rename ScaLAPACK-2.0.2-gmpich2-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb * new name: ScaLAPACK-2.0.2-gmpich-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb * adjust toolchain accordingly --- ...ScaLAPACK-2.0.2-gmpich-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/s/ScaLAPACK/{ScaLAPACK-2.0.2-gmpich2-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb => ScaLAPACK-2.0.2-gmpich-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb} (91%) diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmpich2-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmpich-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb similarity index 91% rename from easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmpich2-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb rename to easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmpich-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb index 967d7b0bda..5325489376 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmpich2-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmpich-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb @@ -5,7 +5,7 @@ homepage = 'http://www.netlib.org/scalapack/' description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.""" -toolchain = {'name': 'gmpich2', 'version': '1.4.8'} +toolchain = {'name': 'gmpich', 'version': '1.4.8'} toolchainopts = {'pic': True} source_urls = [homepage] -- GitLab From 3faba9ad838f35c60bc85377b2e5ded56848d2b9 Mon Sep 17 00:00:00 2001 From: Markus Geimer Date: Sun, 30 Nov 2014 16:05:28 +0100 Subject: [PATCH 0129/1217] Rename FFTW-3.3.3-gmpich2-1.4.8.eb * new name: FFTW-3.3.3-gmpich-1.4.8.eb * adjust toolchain accordingly --- .../{FFTW-3.3.3-gmpich2-1.4.8.eb => FFTW-3.3.3-gmpich-1.4.8.eb} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/f/FFTW/{FFTW-3.3.3-gmpich2-1.4.8.eb => FFTW-3.3.3-gmpich-1.4.8.eb} (95%) diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich2-1.4.8.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich-1.4.8.eb similarity index 95% rename from easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich2-1.4.8.eb rename to easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich-1.4.8.eb index 260a090f9c..8e1f6773f0 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich2-1.4.8.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich-1.4.8.eb @@ -5,7 +5,7 @@ homepage = 'http://www.fftw.org' description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.""" -toolchain = {'name': 'gmpich2', 'version': '1.4.8'} +toolchain = {'name': 'gmpich', 'version': '1.4.8'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -- GitLab From 4811bdfe8c85175ac1a565d902dade7acf1adb09 Mon Sep 17 00:00:00 2001 From: Markus Geimer Date: Sun, 30 Nov 2014 16:08:14 +0100 Subject: [PATCH 0130/1217] Update gmpolf dependencies * use MPICH rather than MPICH2 --- easybuild/easyconfigs/g/gmpolf/gmpolf-1.4.8.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/g/gmpolf/gmpolf-1.4.8.eb b/easybuild/easyconfigs/g/gmpolf/gmpolf-1.4.8.eb index dc21b726a3..0c9aa5c313 100644 --- a/easybuild/easyconfigs/g/gmpolf/gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/g/gmpolf/gmpolf-1.4.8.eb @@ -19,14 +19,14 @@ blas = '%s-%s' % (blaslib, blasver) blassuff = '-LAPACK-3.4.2' # toolchain used to build dependencies -comp_mpi_tc_name = 'gmpich2' +comp_mpi_tc_name = 'gmpich' comp_mpi_tc_ver = version comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) # compiler toolchain dependencies dependencies = [ comp, - ('MPICH2', '3.0.4', '', comp), # part of gmpich2 toolchain + ('MPICH', '3.0.4', '', comp), # part of gmpich toolchain (blaslib, blasver, blassuff, comp_mpi_tc), ('FFTW', '3.3.3', '', comp_mpi_tc), ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), -- GitLab From b30f5fef2abbdf4c15f60e3c98e602329fb49358 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 2 Dec 2014 11:50:11 +0100 Subject: [PATCH 0131/1217] Added icc/ifort for intel2015a toolchain --- .../i/icc/icc-2015.0.090-GCC-4.9.2.eb | 23 +++++++++++++++++++ .../iccifort/iccifort-2015.0.090-GCC-4.9.2.eb | 17 ++++++++++++++ .../i/ifort/ifort-2015.0.090-GCC-4.9.2.eb | 23 +++++++++++++++++++ 3 files changed, 63 insertions(+) create mode 100644 easybuild/easyconfigs/i/icc/icc-2015.0.090-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/i/iccifort/iccifort-2015.0.090-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/i/ifort/ifort-2015.0.090-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/i/icc/icc-2015.0.090-GCC-4.9.2.eb b/easybuild/easyconfigs/i/icc/icc-2015.0.090-GCC-4.9.2.eb new file mode 100644 index 0000000000..1c9509e4ed --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2015.0.090-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +name = 'icc' +version = '2015.0.090' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_ccompxe_%(version)s.tgz'] + +gcc = 'GCC' +gccver = '4.9.2' +versionsuffix = '-%s-%s' % (gcc, gccver) + +dependencies = [(gcc, gccver)] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2015.0.090-GCC-4.9.2.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2015.0.090-GCC-4.9.2.eb new file mode 100644 index 0000000000..f522c0e720 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2015.0.090-GCC-4.9.2.eb @@ -0,0 +1,17 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2015.0.090' +versionsuffix = '-GCC-4.9.2' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version, versionsuffix), + ('ifort', version, versionsuffix), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.0.090-GCC-4.9.2.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.0.090-GCC-4.9.2.eb new file mode 100644 index 0000000000..6f1139a94c --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.0.090-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +name = 'ifort' +version = '2015.0.090' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_fcompxe_%(version)s.tgz'] + +gcc = 'GCC' +gccver = '4.9.2' +versionsuffix = '-%s-%s' % (gcc, gccver) + +dependencies = [(gcc, gccver)] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' -- GitLab From 7daa5265a9f62acd330e1d84d7aa4dcb3bfcc13a Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 2 Dec 2014 12:03:26 +0100 Subject: [PATCH 0132/1217] Added impi for intel2015a --- .../i/iimpi/iimpi-7.1.2-GCC-4.9.2.eb | 21 +++++++++++++++++++ ...5.0.1.035-iccifort-2015.0.090-GCC-4.9.2.eb | 19 +++++++++++++++++ 2 files changed, 40 insertions(+) create mode 100644 easybuild/easyconfigs/i/iimpi/iimpi-7.1.2-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-7.1.2-GCC-4.9.2.eb b/easybuild/easyconfigs/i/iimpi/iimpi-7.1.2-GCC-4.9.2.eb new file mode 100644 index 0000000000..d5fa44768d --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-7.1.2-GCC-4.9.2.eb @@ -0,0 +1,21 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '7.1.2' +versionsuffix = '-GCC-4.9.2' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '0.090' +compver = '2015.%s' % suff + +dependencies = [ + ('icc', compver, versionsuffix), + ('ifort', compver, versionsuffix), + ('impi', '5.0.1.035', '', ('iccifort', '%s%s' % (compver, versionsuffix))), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090-GCC-4.9.2.eb b/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090-GCC-4.9.2.eb new file mode 100644 index 0000000000..5f63a18d7b --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090-GCC-4.9.2.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '5.0.1.035' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2015.0.090-GCC-4.9.2'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' -- GitLab From 40e6a43a45e3c921bbff99be942c31467aa31197 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 2 Dec 2014 12:03:42 +0100 Subject: [PATCH 0133/1217] imkl for intel2015a --- .../imkl-11.2.0.090-iimpi-7.1.2-GCC-4.9.2.eb | 22 +++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 easybuild/easyconfigs/i/imkl/imkl-11.2.0.090-iimpi-7.1.2-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.2.0.090-iimpi-7.1.2-GCC-4.9.2.eb b/easybuild/easyconfigs/i/imkl/imkl-11.2.0.090-iimpi-7.1.2-GCC-4.9.2.eb new file mode 100644 index 0000000000..dcb2085bf3 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.2.0.090-iimpi-7.1.2-GCC-4.9.2.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.2.0.090' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '7.1.2-GCC-4.9.2'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +interfaces = True + +moduleclass = 'numlib' -- GitLab From 1fa63ad983ac94be7ffe8630727cbfa7dac76b09 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 2 Dec 2014 12:03:55 +0100 Subject: [PATCH 0134/1217] Added intel-2015a toolchain --- easybuild/easyconfigs/i/intel/intel-2015a.eb | 23 ++++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/i/intel/intel-2015a.eb diff --git a/easybuild/easyconfigs/i/intel/intel-2015a.eb b/easybuild/easyconfigs/i/intel/intel-2015a.eb new file mode 100644 index 0000000000..535fac40a3 --- /dev/null +++ b/easybuild/easyconfigs/i/intel/intel-2015a.eb @@ -0,0 +1,23 @@ +easyblock = "Toolchain" + +name = 'intel' +version = '2015a' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '0.090' +compver = '2015.%s' % suff + +gccsuff = '-GCC-4.9.2' + +dependencies = [ + ('icc', compver, gccsuff), + ('ifort', compver, gccsuff), + ('impi', '5.0.1.035', '', ('iccifort', '%s%s' % (compver, gccsuff))), + ('imkl', '11.2.0.090', '', ('iimpi', '7.1.2%s' % gccsuff)), +] + +moduleclass = 'toolchain' -- GitLab From e1554e9905795b3df9e05173cf111b5a4e429978 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 2 Dec 2014 12:33:57 +0100 Subject: [PATCH 0135/1217] Added Boost for ictce-7.1.2 --- .../Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb new file mode 100644 index 0000000000..d29dcc1cda --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb @@ -0,0 +1,28 @@ +name = 'Boost' +version = '1.55.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +patches = ['intellinuxjam_fPIC.patch', 'boost-impi5.patch'] + +pythonversion = '2.7.8' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +osdependencies = [('zlib-devel','zlib1g-dev')] + +moduleclass = 'devel' -- GitLab From 72bbdc9bd8a170dabd0a835f31d962bb84a890bb Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 2 Dec 2014 12:34:59 +0100 Subject: [PATCH 0136/1217] Added GROMACS 5.0.2 --- .../g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb | 42 +++++++++++++++++++ 1 file changed, 42 insertions(+) create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb new file mode 100644 index 0000000000..5e23be1026 --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb @@ -0,0 +1,42 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# George Tsouloupas , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html +## +name = 'GROMACS' +version = '5.0.2' +versionsuffix = '-mt' + +homepage = 'http://www.gromacs.org' +description = """GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'openmp': True, 'usempi': False} + +source_urls = [ + 'ftp://ftp.gromacs.org/pub/gromacs/', + 'http://gerrit.gromacs.org/download/', +] + +sources = [ + SOURCELOWER_TAR_GZ, +# seems to have disappeared? +# 'regressiontests-5.0.2.tar.gz', +] + +builddependencies = [ + ('CMake', '2.8.12'), + ('libxml2', '2.9.1') +] + +dependencies = [('Boost', '1.55.0', '-Python-2.7.8')] + +moduleclass = 'bio' -- GitLab From ffae6d949021809817926cfc0514897cea9bfcb5 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 2 Dec 2014 13:50:39 +0100 Subject: [PATCH 0137/1217] Added forgotten Boost patch --- .../easyconfigs/b/Boost/boost-impi5.patch | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/boost-impi5.patch diff --git a/easybuild/easyconfigs/b/Boost/boost-impi5.patch b/easybuild/easyconfigs/b/Boost/boost-impi5.patch new file mode 100644 index 0000000000..635da12964 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/boost-impi5.patch @@ -0,0 +1,37 @@ +diff -ur boost_1_55_0.orig/tools/build/v2/tools/mpi.jam boost_1_55_0/tools/build/v2/tools/mpi.jam +--- boost_1_55_0.orig/tools/build/v2/tools/mpi.jam 2012-04-26 23:32:41.000000000 +0200 ++++ boost_1_55_0/tools/build/v2/tools/mpi.jam 2014-09-03 13:45:45.000000000 +0200 +@@ -301,6 +301,16 @@ + } + # OpenMPI and newer versions of LAM-MPI have -showme:compile and + # -showme:link. ++ # Look for MPICH ++ else if [ safe-shell-command "$(command) -show" ] ++ { ++ if $(.debug-configuration) ++ { ++ ECHO "Found MPICH wrapper compiler: $(command)" ; ++ } ++ compile_flags = [ SHELL "$(command) -compile_info" ] ; ++ link_flags = [ SHELL "$(command) -link_info" ] ; ++ } + else if [ safe-shell-command "$(command) -showme:compile" ] && + [ safe-shell-command "$(command) -showme:link" ] + { +@@ -327,16 +337,6 @@ + + result = [ SHELL "$(command) -showme" ] ; + } +- # Look for MPICH +- else if [ safe-shell-command "$(command) -show" ] +- { +- if $(.debug-configuration) +- { +- ECHO "Found MPICH wrapper compiler: $(command)" ; +- } +- compile_flags = [ SHELL "$(command) -compile_info" ] ; +- link_flags = [ SHELL "$(command) -link_info" ] ; +- } + # Sun HPC and Ibm POE + else if [ SHELL "$(command) -v 2>/dev/null" ] + { -- GitLab From 903ded3f346e8151a6849bbce0aaf04d197c161e Mon Sep 17 00:00:00 2001 From: Markus Geimer Date: Tue, 2 Dec 2014 15:02:14 +0100 Subject: [PATCH 0138/1217] Add easyconfig for HPL with gmpolf toolchain --- .../easyconfigs/h/HPL/HPL-2.1-gmpolf-1.4.8.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-gmpolf-1.4.8.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-gmpolf-1.4.8.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-gmpolf-1.4.8.eb new file mode 100644 index 0000000000..61f8974999 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-gmpolf-1.4.8.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'gmpolf', 'version': '1.4.8'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' -- GitLab From ac0185ca4fb153bb4bbe70b6c275731de73df1c7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 3 Dec 2014 11:22:56 +0100 Subject: [PATCH 0139/1217] fix remark, sync new FFTW 3.3.4 easyconfigs --- .../easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb | 2 +- .../easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.12.eb | 6 +++--- easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb | 8 ++++---- easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb | 8 ++++---- easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb | 8 ++++---- 5 files changed, 16 insertions(+), 16 deletions(-) diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb index 5637df1070..80dd3c03d5 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb @@ -26,4 +26,4 @@ sanity_check_paths = { 'dirs': ['lib/pkgconfig'], } -moduleclass = 'lib' +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.12.eb index e4e1a6c3b5..85bfbf2081 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.12.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.12.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", @@ -24,8 +24,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb index 9357899509..88f50b6b88 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" # no quad precision, requires GCC v4.6 or higher configopts = [ @@ -21,11 +21,11 @@ configopts = [ ] sanity_check_paths = { - 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb index b5b642aa96..bd45d6ba66 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" # no quad precision, requires GCC v4.6 or higher configopts = [ @@ -21,11 +21,11 @@ configopts = [ ] sanity_check_paths = { - 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb index f286087fa1..411ebe41f0 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic" +common_configopts = "--enable-threads --enable-openmp --with-pic" # no quad precision, requires GCC v4.6 or higher configopts = [ @@ -21,11 +21,11 @@ configopts = [ ] sanity_check_paths = { - 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', - 'l', 'l_mpi', 'l_omp']], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } -- GitLab From ce1cdedb8e4586d0d566d7c6391f63be1240ba4b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 3 Dec 2014 13:13:50 +0100 Subject: [PATCH 0140/1217] fix links to docs --- CONTRIBUTING.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 87e498e156..fe82903a6c 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -120,7 +120,7 @@ You might also want to look into [hub](https://github.com/defunkt/hub) for more ### Review process -A member of the EasyBuild team will then review your pull request, paying attention to what you're contributing, how you implemented it and [code style](https://github.com/hpcugent/easybuild/wiki/Code-style). +A member of the EasyBuild team will then review your pull request, paying attention to what you're contributing, how you implemented it and [code style](http://easybuild.readthedocs.org/en/latest/Code_style.html). Most likely, some remarks will be made on your pull request. Note that this is nothing personal, we're just trying to keep the EasyBuild codebase as high quality as possible. Even when an EasyBuild team member makes changes, the same public review process is followed. -- GitLab From b5b4beec4e7b3ab106bbb89bc9423a87df6827ea Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 3 Dec 2014 13:17:44 +0100 Subject: [PATCH 0141/1217] fix sanity check for FFTW v3.3.4 with Intel-based toolchains (no quad) --- easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb | 5 ++--- easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb | 5 ++--- easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb | 5 ++--- 3 files changed, 6 insertions(+), 9 deletions(-) diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb index 88f50b6b88..63d927468f 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb @@ -21,11 +21,10 @@ configopts = [ ] sanity_check_paths = { - 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb index bd45d6ba66..d2421db818 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb @@ -21,11 +21,10 @@ configopts = [ ] sanity_check_paths = { - 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb index 411ebe41f0..af146b65d5 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb @@ -21,11 +21,10 @@ configopts = [ ] sanity_check_paths = { - 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], 'dirs': ['lib/pkgconfig'], } -- GitLab From 5cceb3fe2147a74e04874364e6e775459fd460d7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 3 Dec 2014 17:11:06 +0100 Subject: [PATCH 0142/1217] add intel 2014.11 definition + required easyconfigs --- .../i/icc/icc-2015.1.133-GCC-4.9.2.eb | 23 +++++++++++++++++++ .../iccifort/iccifort-2015.1.133-GCC-4.9.2.eb | 17 ++++++++++++++ .../i/ifort/ifort-2015.1.133-GCC-4.9.2.eb | 23 +++++++++++++++++++ .../i/iimpi/iimpi-7.2.3-GCC-4.9.2.eb | 21 +++++++++++++++++ .../imkl-11.2.1.133-iimpi-7.2.3-GCC-4.9.2.eb | 22 ++++++++++++++++++ ...5.0.2.044-iccifort-2015.1.133-GCC-4.9.2.eb | 19 +++++++++++++++ .../{intel-2015a.eb => intel-2014.11.eb} | 8 +++---- 7 files changed, 129 insertions(+), 4 deletions(-) create mode 100644 easybuild/easyconfigs/i/icc/icc-2015.1.133-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/i/iccifort/iccifort-2015.1.133-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/i/ifort/ifort-2015.1.133-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/i/iimpi/iimpi-7.2.3-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-iimpi-7.2.3-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.1.133-GCC-4.9.2.eb rename easybuild/easyconfigs/i/intel/{intel-2015a.eb => intel-2014.11.eb} (74%) diff --git a/easybuild/easyconfigs/i/icc/icc-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/i/icc/icc-2015.1.133-GCC-4.9.2.eb new file mode 100644 index 0000000000..b547268098 --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2015.1.133-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +name = 'icc' +version = '2015.1.133' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_ccompxe_%(version)s.tgz'] + +gcc = 'GCC' +gccver = '4.9.2' +versionsuffix = '-%s-%s' % (gcc, gccver) + +dependencies = [(gcc, gccver)] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2015.1.133-GCC-4.9.2.eb new file mode 100644 index 0000000000..ac14186d63 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2015.1.133-GCC-4.9.2.eb @@ -0,0 +1,17 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2015.1.133' +versionsuffix = '-GCC-4.9.2' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version, versionsuffix), + ('ifort', version, versionsuffix), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.1.133-GCC-4.9.2.eb new file mode 100644 index 0000000000..b653c4f858 --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.1.133-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +name = 'ifort' +version = '2015.1.133' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_fcompxe_%(version)s.tgz'] + +gcc = 'GCC' +gccver = '4.9.2' +versionsuffix = '-%s-%s' % (gcc, gccver) + +dependencies = [(gcc, gccver)] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-7.2.3-GCC-4.9.2.eb b/easybuild/easyconfigs/i/iimpi/iimpi-7.2.3-GCC-4.9.2.eb new file mode 100644 index 0000000000..e5ac3571c5 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-7.2.3-GCC-4.9.2.eb @@ -0,0 +1,21 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '7.2.3' +versionsuffix = '-GCC-4.9.2' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '1.133' +compver = '2015.%s' % suff + +dependencies = [ + ('icc', compver, versionsuffix), + ('ifort', compver, versionsuffix), + ('impi', '5.0.2.044', '', ('iccifort', '%s%s' % (compver, versionsuffix))), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-iimpi-7.2.3-GCC-4.9.2.eb b/easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-iimpi-7.2.3-GCC-4.9.2.eb new file mode 100644 index 0000000000..a249ac518b --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-iimpi-7.2.3-GCC-4.9.2.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.2.1.133' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '7.2.3-GCC-4.9.2'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +interfaces = True + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.1.133-GCC-4.9.2.eb new file mode 100644 index 0000000000..64a9011ae4 --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.1.133-GCC-4.9.2.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '5.0.2.044' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2015.1.133-GCC-4.9.2'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/intel/intel-2015a.eb b/easybuild/easyconfigs/i/intel/intel-2014.11.eb similarity index 74% rename from easybuild/easyconfigs/i/intel/intel-2015a.eb rename to easybuild/easyconfigs/i/intel/intel-2014.11.eb index 535fac40a3..1bdbdfe846 100644 --- a/easybuild/easyconfigs/i/intel/intel-2015a.eb +++ b/easybuild/easyconfigs/i/intel/intel-2014.11.eb @@ -1,14 +1,14 @@ easyblock = "Toolchain" name = 'intel' -version = '2015a' +version = '2014.11' homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" toolchain = {'name': 'dummy', 'version': 'dummy'} -suff = '0.090' +suff = '1.133' compver = '2015.%s' % suff gccsuff = '-GCC-4.9.2' @@ -16,8 +16,8 @@ gccsuff = '-GCC-4.9.2' dependencies = [ ('icc', compver, gccsuff), ('ifort', compver, gccsuff), - ('impi', '5.0.1.035', '', ('iccifort', '%s%s' % (compver, gccsuff))), - ('imkl', '11.2.0.090', '', ('iimpi', '7.1.2%s' % gccsuff)), + ('impi', '5.0.2.044', '', ('iccifort', '%s%s' % (compver, gccsuff))), + ('imkl', '11.2.1.133', '', ('iimpi', '7.2.3%s' % gccsuff)), ] moduleclass = 'toolchain' -- GitLab From cd5d86786bc89093ba7f3e427506a0323b93aa25 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 3 Dec 2014 17:26:59 +0100 Subject: [PATCH 0143/1217] Added intel-2014.10 --- .../easyconfigs/i/intel/intel-2014.10.eb | 23 +++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/i/intel/intel-2014.10.eb diff --git a/easybuild/easyconfigs/i/intel/intel-2014.10.eb b/easybuild/easyconfigs/i/intel/intel-2014.10.eb new file mode 100644 index 0000000000..d89452f540 --- /dev/null +++ b/easybuild/easyconfigs/i/intel/intel-2014.10.eb @@ -0,0 +1,23 @@ +easyblock = "Toolchain" + +name = 'intel' +version = '2014.10' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '0.090' +compver = '2015.%s' % suff + +gccsuff = '-GCC-4.9.2' + +dependencies = [ + ('icc', compver, gccsuff), + ('ifort', compver, gccsuff), + ('impi', '5.0.1.035', '', ('iccifort', '%s%s' % (compver, gccsuff))), + ('imkl', '11.2.0.090', '', ('iimpi', '7.1.2%s' % gccsuff)), +] + +moduleclass = 'toolchain' -- GitLab From d2cca9f590322e8f01abc3252734e40fa4cb458d Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 4 Dec 2014 13:05:38 +0100 Subject: [PATCH 0144/1217] WRF 3.6.1 with intel2014b --- .../t/tcsh/tcsh-6.18.01-intel-2014b.eb | 37 ++++ .../w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb | 37 ++++ .../w/WRF/WRF-3.6.1_known_problems.patch | 43 ++++ ...F-3.6.1_netCDF-Fortran_separate_path.patch | 198 ++++++++++++++++++ 4 files changed, 315 insertions(+) create mode 100644 easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb create mode 100644 easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb create mode 100644 easybuild/easyconfigs/w/WRF/WRF-3.6.1_known_problems.patch create mode 100644 easybuild/easyconfigs/w/WRF/WRF-3.6.1_netCDF-Fortran_separate_path.patch diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb new file mode 100644 index 0000000000..561bbdc7fd --- /dev/null +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb @@ -0,0 +1,37 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit +# Authors:: Valentin Plugaru +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html +## + +name = 'tcsh' +version = '6.18.01' + +homepage = 'http://www.tcsh.org' +description = """Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). + It is a command language interpreter usable both as an interactive login shell and a shell script command + processor. It includes a command-line editor, programmable word completion, spelling correction, a history + mechanism, job control and a C-like syntax.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'ftp://ftp.astron.com/pub/%(namelower)s', + 'ftp://ftp.astron.com/pub/%(namelower)s/old', +] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/tcsh"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb new file mode 100644 index 0000000000..3fa4476f24 --- /dev/null +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb @@ -0,0 +1,37 @@ +name = 'WRF' +version = '3.6.1' + +homepage = 'http://www.wrf-model.org' +description = """The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale + numerical weather prediction system designed to serve both operational forecasting and atmospheric + research needs.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 + +sources = ['%(name)sV%(version)s.TAR.gz'] +source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] + +# csh is used by WRF install scripts +builddependencies = [('tcsh', '6.18.01')] + +dependencies = [ + ('JasPer', '1.900.1'), + ('netCDF', '4.3.2'), + ('netCDF-Fortran', '4.4.0'), +] + +patches = [ + 'WRF_parallel_build_fix.patch', + 'WRF-3.6.1_netCDF-Fortran_separate_path.patch', + 'WRF-3.6.1_known_problems.patch', + 'WRF_tests_limit-runtimes.patch', +] + +# limit parallel build to 20 +maxparallel = 20 + +buildtype = "dmpar" +versionsuffix = '-%s' % buildtype + +moduleclass = 'geo' diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1_known_problems.patch b/easybuild/easyconfigs/w/WRF/WRF-3.6.1_known_problems.patch new file mode 100644 index 0000000000..f99748c0f8 --- /dev/null +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1_known_problems.patch @@ -0,0 +1,43 @@ +# see http://www2.mmm.ucar.edu/wrf/users/wrfv3.6/known-prob-3.6.1.html +--- WRFV3.orig/dyn_em/module_initialize_real.F 2014-08-13 04:03:11.000000000 +0200 ++++ WRFV3/dyn_em/module_initialize_real.F 2014-10-08 18:40:04.000000000 +0200 +@@ -4666,13 +4666,13 @@ + CALL lagrange_setup ( var_type , interp_type , & + ordered_porig(kinterp_start:kinterp_end) , & + ordered_forig(kinterp_start:kinterp_end) , & +- count , lagrange_order , extrap_type , & ++ kinterp_end-kinterp_start+1 , lagrange_order , extrap_type , & + ordered_pnew(kstart:kend) , ordered_fnew , kend-kstart+1 ,i,j) + ELSE + CALL lagrange_setup ( var_type , interp_type , & + LOG(ordered_porig(kinterp_start:kinterp_end)) , & + ordered_forig(kinterp_start:kinterp_end) , & +- count , lagrange_order , extrap_type , & ++ kinterp_end-kinterp_start+1 , lagrange_order , extrap_type , & + LOG(ordered_pnew(kstart:kend)) , ordered_fnew , kend-kstart+1 ,i,j) + END IF + +--- WRFV3.orig/dyn_em/module_em.F 2014-01-10 22:04:29.000000000 +0100 ++++ WRFV3/dyn_em/module_em.F 2014-10-08 22:17:10.000000000 +0200 +@@ -2109,8 +2109,8 @@ + REAL , DIMENSION( ims:ime , jms:jme ) , & + INTENT(IN ) ::xlong, xlat + +- real, dimension(kms:kme), intent(inout) :: traj_i,traj_j,traj_k +- real, dimension(kms:kme), intent(inout) :: traj_long,traj_lat ++ real, dimension(1:config_flags%num_traj), intent(inout) :: traj_i,traj_j,traj_k ++ real, dimension(1:config_flags%num_traj), intent(inout) :: traj_long,traj_lat + real, dimension(ims:ime,kms:kme,jms:jme),intent(in) :: rdzw + real, dimension(ims:ime,kms:kme,jms:jme)::u,v,w + real, dimension(ims:ime,jms:jme),intent(in)::msft,msfu,msfv +--- WRFV3.orig/frame/module_io_quilt.F 2014-08-08 22:53:35.000000000 +0200 ++++ WRFV3/frame/module_io_quilt.F 2014-10-08 20:21:28.000000000 +0200 +@@ -2620,7 +2620,7 @@ + CALL wrf_get_dm_communicator( mpi_comm_here ) + + CALL MPI_Comm_rank ( mpi_comm_here, mytask, ierr ) ; +- CALL mpi_x_comm_size ( mpi_comm_here, ntasks, ierr ) ; ++ CALL mpi_x_comm_size( mpi_comm_here, ntasks, ierr ) ; + + IF ( mytask .EQ. 0 ) THEN + OPEN ( unit=27, file="namelist.input", form="formatted", status="old" ) diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1_netCDF-Fortran_separate_path.patch b/easybuild/easyconfigs/w/WRF/WRF-3.6.1_netCDF-Fortran_separate_path.patch new file mode 100644 index 0000000000..0aa182e07c --- /dev/null +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1_netCDF-Fortran_separate_path.patch @@ -0,0 +1,198 @@ +# WRF-3.5_netCDF-Fortran_separate_path.patch updated in order to work with netCDF libraries placed either to lib or lib64 directories +#B. Hajgato Dec 4th 2014 +--- WRFV3.orig/arch/Config_new.pl 2013-08-16 23:54:59.000000000 +0200 ++++ WRFV3/arch/Config_new.pl 2014-12-03 14:10:04.404289987 +0100 +@@ -8,6 +8,7 @@ + select((select(STDOUT), $|=1)[0]); + $sw_perl_path = perl ; + $sw_netcdf_path = "" ; ++$sw_netcdff_path = "" ; # for netCDF 4.2 and greater, Fortran lib may be in a different path + $sw_pnetcdf_path = "" ; + $sw_phdf5_path=""; + $sw_jasperlib_path=""; +@@ -83,6 +84,10 @@ + } + } + } ++ if ( substr( $ARGV[0], 1, 8 ) eq "netcdff=" ) ++ { ++ $sw_netcdff_path = substr( $ARGV[0], 9 ) ; ++ } + if ( substr( $ARGV[0], 1, 8 ) eq "pnetcdf=" ) + { + $sw_pnetcdf_path = substr( $ARGV[0], 9 ) ; +@@ -106,6 +111,7 @@ + if ( substr( $ARGV[0], 1, 11 ) eq "USENETCDFF=" ) + { + $sw_usenetcdff = substr( $ARGV[0], 12 ) ; ++ $sw_usenetcdff =~ s/!/ /g ; + } + if ( substr( $ARGV[0], 1, 5 ) eq "time=" ) + { +@@ -362,6 +368,7 @@ + { + $_ =~ s/CONFIGURE_PERL_PATH/$sw_perl_path/g ; + $_ =~ s/CONFIGURE_NETCDF_PATH/$sw_netcdf_path/g ; ++ $_ =~ s/CONFIGURE_NETCDFF_PATH/$sw_netcdff_path/g ; + $_ =~ s/CONFIGURE_PNETCDF_PATH/$sw_pnetcdf_path/g ; + $_ =~ s/CONFIGURE_PHDF5_PATH/$sw_phdf5_path/g ; + $_ =~ s/CONFIGURE_LDFLAGS/$sw_ldflags/g ; +--- WRFV3.orig/arch/configure_new.defaults 2014-07-13 01:32:03.000000000 +0200 ++++ WRFV3/arch/configure_new.defaults 2014-12-03 14:10:04.410289987 +0100 +@@ -1516,6 +1516,7 @@ + + LIB_EXTERNAL = \ + ../external/io_netcdf/libwrfio_nf.a CONFIGURE_NETCDF_PATH/lib/libnetcdf.lib \ ++ CONFIGURE_NETCDFF_PATH/lib/libnetcdff.lib \ + ../external/wavelet/libWavelet.a ../external/wavelet/lib_wavelet.a + ESMF_IO_LIB = ../external/esmf_time_f90/libesmf_time.a + LIB_BUNDLED = \ +--- WRFV3.orig/arch/conf_tokens 2008-02-26 16:39:38.000000000 +0100 ++++ WRFV3/arch/conf_tokens 2014-12-03 14:10:04.421289987 +0100 +@@ -5,6 +5,7 @@ + CONFIGURE_DMPARALLEL + CONFIGURE_RWORDSIZE + CONFIGURE_NETCDF_FLAG ++CONFIGURE_NETCDF_FLAG + CONFIGURE_GRIB2_FLAG + CONFIGURE_NETCDF_LIB_PATH + CONFIGURE_GRIB2_LIB +@@ -13,4 +14,5 @@ + CONFIGURE_WRFIO_NF + CONFIGURE_WRFIO_GRIB2 + CONFIGURE_NETCDF_PATH ++CONFIGURE_NETCDFF_PATH + CONFIGURE_GRIB2_INC +--- WRFV3.orig/arch/postamble_new 2014-07-13 01:39:10.000000000 +0200 ++++ WRFV3/arch/postamble_new 2014-12-03 14:10:04.431289987 +0100 +@@ -42,6 +42,7 @@ + -I$(WRF_SRC_ROOT_DIR)/phys \ + -I$(WRF_SRC_ROOT_DIR)/chem -I$(WRF_SRC_ROOT_DIR)/inc \ + -I$(NETCDFPATH)/include \ ++ -I$(NETCDFFPATH)/include \ + CONFIGURE_RTTOV_INC + REGISTRY = Registry + CC_TOOLS_CFLAGS = CONFIGURE_NMM_CORE +@@ -64,6 +65,7 @@ + ENVCOMPDEFS = CONFIGURE_COMPILEFLAGS + CPPFLAGS = $(ARCHFLAGS) $(ENVCOMPDEFS) -I$(LIBINCLUDE) $(TRADFLAG) CONFIGURE_COMMS_INCLUDE + NETCDFPATH = CONFIGURE_NETCDF_PATH ++NETCDFFPATH = CONFIGURE_NETCDFF_PATH + PNETCDFPATH = CONFIGURE_PNETCDF_PATH + + bundled: io_only CONFIGURE_ATMOCN +@@ -92,7 +94,7 @@ + + wrfio_nf : + ( cd $(WRF_SRC_ROOT_DIR)/external/io_netcdf ; \ +- make $(J) NETCDFPATH="$(NETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \ ++ make $(J) NETCDFPATH="$(NETCDFPATH)" NETCDFFPATH="$(NETCDFFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \ + CC="$(SCC)" CFLAGS="$(CFLAGS)" \ + FC="$(SFC) $(PROMOTION) $(OMP) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" ) + +--- WRFV3.orig/Makefile 2014-08-08 21:37:17.000000000 +0200 ++++ WRFV3/Makefile 2014-12-03 14:10:04.457289987 +0100 +@@ -597,7 +597,7 @@ + @ echo '--------------------------------------' + ( cd frame ; $(MAKE) $(J) framework; \ + cd ../external/io_netcdf ; \ +- $(MAKE) NETCDFPATH="$(NETCDFPATH)" FC="$(SFC) $(FCBASEOPTS)" RANLIB="$(RANLIB)" \ ++ $(MAKE) NETCDFPATH="$(NETCDFPATH)" FNETCDFFPATH="$(NETCDFFPATH)" FC="$(SFC) $(FCBASEOPTS)" RANLIB="$(RANLIB)" \ + CPP="$(CPP)" LDFLAGS="$(LDFLAGS)" TRADFLAG="$(TRADFLAG)" ESMF_IO_LIB_EXT="$(ESMF_IO_LIB_EXT)" \ + LIB_LOCAL="$(LIB_LOCAL)" \ + ESMF_MOD_DEPENDENCE="$(ESMF_MOD_DEPENDENCE)" AR="INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR" diffwrf; \ +--- WRFV3.orig/configure 2014-05-03 21:27:47.000000000 +0200 ++++ WRFV3/configure 2014-12-03 14:34:03.567289861 +0100 +@@ -277,10 +277,18 @@ + USENETCDFF="" # see below + if [ -n "$NETCDF" ] ; then + echo "Will use NETCDF in dir: $NETCDF" ++ # for netCDF 4.2 and greater, the Fortran library is a separate install ++ if [ -z "$NETCDFF" ]; then ++ NETCDFF="$NETCDFF" ++ fi + # for 3.6.2 and greater there might be a second library, libnetcdff.a . Check for this and use + # if available + if [ -f "$NETCDF/lib/libnetcdff.a" -o -f "$NETCDF/lib/libnetcdff.so" ] ; then + USENETCDFF="-lnetcdff" ++ else ++ if [ -f "$NETCDFF/lib/libnetcdff.a" -o -f "$NETCDFF/lib/libnetcdff.so" -o -f "$NETCDFF/lib64/libnetcdff.so" -o -f "$NETCDFF/lib64/libnetcdff.so" ] ; then ++ USENETCDFF="-L$NETCDFF/lib!-L$NETCDFF/lib64!-lnetcdff" # ! will be replaced with space ++ fi + fi + else + echo "Will configure for use without NetCDF" +@@ -553,7 +561,7 @@ + srch=`grep -i "^#ARCH.*$os" arch/configure_new.defaults | grep -i "$mach"` + if [ -n "$srch" ] ; then + $PERL arch/Config_new.pl -dmparallel=$COMMLIB -ompparallel=$OMP -perl=$PERL \ +- -netcdf=$NETCDF -pnetcdf=$PNETCDF -phdf5=$PHDF5 -os=$os -mach=$mach -ldflags=$ldflags \ ++ -netcdf=$NETCDF -netcdff=$NETCDFF -pnetcdf=$PNETCDF -phdf5=$PHDF5 -os=$os -mach=$mach -ldflags=$ldflags \ + -compileflags=$compileflags -opt_level=$opt_level -USENETCDFF=$USENETCDFF -time=$FORTRAN_COMPILER_TIMER \ + -wrf_core=$wrf_core -gpfs=$GPFS_PATH -curl=$CURL_PATH -dep_lib_path="$DEP_LIB_PATH" + if test ! -f configure.wrf ; then +@@ -652,10 +660,10 @@ + echo "If you wish to change the default options, edit the file:" + echo " arch/configure_new.defaults" + +-if test -n "$NETCDF" ; then +- if [ ! -f $NETCDF/include/netcdf.inc ] ; then ++if test -n "$NETCDFF" ; then ++ if [ ! -f $NETCDFF/include/netcdf.inc ] ; then + echo +- echo "Error : Not found $NETCDF/include/netcdf.inc" ++ echo "Error : Not found $NETCDFF/include/netcdf.inc" + echo " Please check this installation of NetCDF and re-run this configure script" + echo + if test -n "$NETCDF4" ; then +@@ -664,7 +672,7 @@ + fi + exit -1 + fi +- grep nf_format_64bit $NETCDF/include/netcdf.inc > /dev/null ++ grep nf_format_64bit $NETCDFF/include/netcdf.inc > /dev/null + configure_aaaa=$? ; export configure_aaaa + if [ $configure_aaaa -a -z "$WRFIO_NCD_LARGE_FILE_SUPPORT" ] ; then + echo "NetCDF users note:" +--- WRFV3.orig/external/io_netcdf/makefile 2014-07-13 01:39:10.000000000 +0200 ++++ WRFV3/external/io_netcdf/makefile 2014-12-03 14:39:31.007289832 +0100 +@@ -3,9 +3,9 @@ + OBJSL = wrf_io.o field_routines.o module_wrfsi_static.o + OBJS = $(OBJSL) + CODE = ext_ncd_get_dom_ti.code ext_ncd_get_var_td.code ext_ncd_get_var_ti.code ext_ncd_put_dom_ti.code ext_ncd_put_var_td.code ext_ncd_put_var_ti.code transpose.code +-FFLAGS = $(FCFLAGS) -I$(NETCDFPATH)/include -I../ioapi_share +-LIBS = $(LIB_LOCAL) -L$(NETCDFPATH)/lib -lnetcdf +-LIBFFS = $(LIB_LOCAL) -L$(NETCDFPATH)/lib -lnetcdff -lnetcdf $(NETCDF4_DEP_LIB) ++FFLAGS = $(FCFLAGS) -I$(NETCDFFPATH)/include -I../ioapi_share ++LIBS = $(LIB_LOCAL) -L$(NETCDFPATH)/lib -L$(NETCDFPATH)/lib64 -lnetcdf ++LIBFFS = $(LIB_LOCAL) -L$(NETCDFPATH)/lib -L$(NETCDFPATH)/lib64 -L$(NETCDFFPATH)/lib -L$(NETCDFFPATH)/lib64 -lnetcdff -lnetcdf $(NETCDF4_DEP_LIB) + CPP1 = $(CPP) -P $(TRADFLAG) + M4 = m4 -Uinclude -Uindex -Ulen + AR = ar +@@ -24,7 +24,7 @@ + $(RANLIB) $@ + + wrf_io.o: wrf_io.F90 $(CODE) +- grep nf_format_64bit $(NETCDFPATH)/include/netcdf.inc ;\ ++ grep nf_format_64bit $(NETCDFFPATH)/include/netcdf.inc ;\ + a=$$? ; export a ; \ + if [ $$a -a "$$WRFIO_NCD_LARGE_FILE_SUPPORT" = "1" ] ; then \ + $(CPP1) -DWRFIO_NCD_LARGE_FILE_SUPPORT -I../ioapi_share wrf_io.F90 | $(M4) - > wrf_io.f ; \ +@@ -43,14 +43,14 @@ + x=`echo "$(FC)" | awk '{print $$1}'` ; export x ; \ + if [ $$x = "gfortran" ] ; then \ + echo removing external declaration of iargc for gfortran ; \ +- $(CPP1) -I$(NETCDFPATH)/include -I../ioapi_share diffwrf.F90 | sed '/integer *, *external.*iargc/d' > diffwrf.f ;\ ++ $(CPP1) -I$(NETCDFFPATH)/include -I../ioapi_share diffwrf.F90 | sed '/integer *, *external.*iargc/d' > diffwrf.f ;\ + else \ +- $(CPP1) -I$(NETCDFPATH)/include -I../ioapi_share diffwrf.F90 > diffwrf.f ; \ ++ $(CPP1) -I$(NETCDFFPATH)/include -I../ioapi_share diffwrf.F90 > diffwrf.f ; \ + fi + $(FC) -c $(FFLAGS) diffwrf.f + @if [ \( -f ../../frame/wrf_debug.o \) -a \( -f ../../frame/module_wrf_error.o \) -a \( -f $(ESMF_MOD_DEPENDENCE) \) -a \( -f ../../frame/clog.o \) ] ; then \ + echo "diffwrf io_netcdf is being built now. " ; \ +- if [ \( -f $(NETCDFPATH)/lib/libnetcdff.a -o -f $(NETCDFPATH)/lib/libnetcdff.so \) ] ; then \ ++ if [ \( -f $(NETCDFFPATH)/lib/libnetcdff.a -o -f $(NETCDFFPATH)/lib/libnetcdff.so -o -f $(NETCDFFPATH)/lib64/libnetcdff.a -o -f $(NETCDFFPATH)/lib64/libnetcdff.so \) ] ; then \ + $(FC) $(FFLAGS) $(LDFLAGS) -o diffwrf diffwrf.o $(OBJSL) ../../frame/wrf_debug.o ../../frame/module_wrf_error.o ../../frame/clog.o $(ESMF_IO_LIB_EXT) $(LIBFFS) ;\ + else \ + $(FC) $(FFLAGS) $(LDFLAGS) -o diffwrf diffwrf.o $(OBJSL) ../../frame/wrf_debug.o ../../frame/module_wrf_error.o ../../frame/clog.o $(ESMF_IO_LIB_EXT) $(LIBS) ;\ -- GitLab From 5605f141b841e39d3fe88fe1f02e936203470782 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 4 Dec 2014 15:36:45 +0100 Subject: [PATCH 0145/1217] Typo corrected --- .../w/WRF/WRF-3.6.1_netCDF-Fortran_separate_path.patch | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1_netCDF-Fortran_separate_path.patch b/easybuild/easyconfigs/w/WRF/WRF-3.6.1_netCDF-Fortran_separate_path.patch index 0aa182e07c..6c4aba8c36 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.6.1_netCDF-Fortran_separate_path.patch +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1_netCDF-Fortran_separate_path.patch @@ -97,7 +97,7 @@ ( cd frame ; $(MAKE) $(J) framework; \ cd ../external/io_netcdf ; \ - $(MAKE) NETCDFPATH="$(NETCDFPATH)" FC="$(SFC) $(FCBASEOPTS)" RANLIB="$(RANLIB)" \ -+ $(MAKE) NETCDFPATH="$(NETCDFPATH)" FNETCDFFPATH="$(NETCDFFPATH)" FC="$(SFC) $(FCBASEOPTS)" RANLIB="$(RANLIB)" \ ++ $(MAKE) NETCDFPATH="$(NETCDFPATH)" NETCDFFPATH="$(NETCDFFPATH)" FC="$(SFC) $(FCBASEOPTS)" RANLIB="$(RANLIB)" \ CPP="$(CPP)" LDFLAGS="$(LDFLAGS)" TRADFLAG="$(TRADFLAG)" ESMF_IO_LIB_EXT="$(ESMF_IO_LIB_EXT)" \ LIB_LOCAL="$(LIB_LOCAL)" \ ESMF_MOD_DEPENDENCE="$(ESMF_MOD_DEPENDENCE)" AR="INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR" diffwrf; \ -- GitLab From bd1c346f6b948a1b7c955f1f5c7d5183a3e88ef8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 5 Dec 2014 19:28:14 +0100 Subject: [PATCH 0146/1217] fix version in GATE v6.2 easyconfigs, and clean up for using ported GATE easyblock --- .../c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb | 2 +- .../c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb | 2 +- .../g/GATE/GATE-6.2-goalf-1.1.0-no-OFED.eb | 23 ++++++++++ .../g/GATE/GATE-6.2-goolf-1.4.10.eb | 26 +++++++++++ .../g/GATE/GATE-6.2-ictce-4.0.6.eb | 25 ++++++++++ .../easyconfigs/g/GATE/GATE-6.2_GCC-4.7.patch | 22 +++++++++ .../g/GATE/GATE-6.2_Makefile-prefix.patch | 46 +++++++++++++++++++ .../easyconfigs/g/GATE/GATE-6.2_unistd.patch | 10 ++++ .../g/GATE/GATE-v6.2-goalf-1.1.0-no-OFED.eb | 33 ------------- .../g/GATE/GATE-v6.2-goolf-1.4.10.eb | 34 -------------- .../g/GATE/GATE-v6.2-ictce-4.0.6.eb | 33 ------------- 11 files changed, 154 insertions(+), 102 deletions(-) create mode 100644 easybuild/easyconfigs/g/GATE/GATE-6.2-goalf-1.1.0-no-OFED.eb create mode 100644 easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb create mode 100644 easybuild/easyconfigs/g/GATE/GATE-6.2-ictce-4.0.6.eb create mode 100644 easybuild/easyconfigs/g/GATE/GATE-6.2_GCC-4.7.patch create mode 100644 easybuild/easyconfigs/g/GATE/GATE-6.2_Makefile-prefix.patch create mode 100644 easybuild/easyconfigs/g/GATE/GATE-6.2_unistd.patch delete mode 100644 easybuild/easyconfigs/g/GATE/GATE-v6.2-goalf-1.1.0-no-OFED.eb delete mode 100644 easybuild/easyconfigs/g/GATE/GATE-v6.2-goolf-1.4.10.eb delete mode 100644 easybuild/easyconfigs/g/GATE/GATE-v6.2-ictce-4.0.6.eb diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb index 3585a1adbe..71db56ea69 100644 --- a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb @@ -13,6 +13,6 @@ sources = [SOURCELOWER_TGZ] source_urls = ['http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/'] # CLHEP compiles with icc instead of icpc -configopts = "CXX=icc" +configopts = 'CXX="$CC" CXXFLAGS="$CXXFLAGS -gcc"' moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb index b61ee5dfbe..f022e8c51b 100644 --- a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb @@ -14,6 +14,6 @@ sources = [SOURCELOWER_TGZ] source_urls = ['http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/'] # CLHEP compiles with icc instead of icpc -configopts = "CXX=icc" +configopts = 'CXX="$CC" CXXFLAGS="$CXXFLAGS -gcc"' moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GATE/GATE-6.2-goalf-1.1.0-no-OFED.eb new file mode 100644 index 0000000000..b3ec8c73df --- /dev/null +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2-goalf-1.1.0-no-OFED.eb @@ -0,0 +1,23 @@ +name = 'GATE' +version = '6.2' + +homepage = 'http://www.opengatecollaboration.org/' +description = """GATE is an advanced opensource software developed by the international OpenGATE collaboration and + dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography + (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography""" + +toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} + +sources = [('%%(namelower)s_v%s_tar_gz_15843.gz' % '_'.join(version.split('.')), "tar xfvz %s")] +source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/'] + +patches = ['GATE-%(version)s_Makefile-prefix.patch'] + +dependencies = [ + ('Geant4', '9.5.p01'), + ('CLHEP', '2.1.1.0'), + ('ROOT', 'v5.34.01'), + ('CMake', '2.8.4'), +] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb new file mode 100644 index 0000000000..0def719593 --- /dev/null +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb @@ -0,0 +1,26 @@ +name = 'GATE' +version = '6.2' + +homepage = 'http://www.opengatecollaboration.org/' +description = """GATE is an advanced opensource software developed by the international OpenGATE collaboration and + dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography + (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = [('%%(namelower)s_v%s_tar_gz_15843.gz' % '_'.join(version.split('.')), "tar xfvz %s")] +source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/'] + +patches = [ + 'GATE-%(version)s_Makefile-prefix.patch', + 'GATE-v%(version)s_GCC-4.7.patch', +] + +dependencies = [ + ('Geant4', '9.5.p01'), + ('CLHEP', '2.1.1.0'), + ('ROOT', 'v5.34.01'), + ('CMake', '2.8.4'), +] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GATE/GATE-6.2-ictce-4.0.6.eb new file mode 100644 index 0000000000..720671b961 --- /dev/null +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2-ictce-4.0.6.eb @@ -0,0 +1,25 @@ +name = 'GATE' +version = '6.2' + +homepage = 'http://www.opengatecollaboration.org/' +description = """GATE is an advanced opensource software developed by the international OpenGATE collaboration and + dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography + (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography""" + +toolchain = {'name': 'ictce', 'version': '4.0.6'} + +sources = [('%%(namelower)s_v%s_tar_gz_15843.gz' % '_'.join(version.split('.')), "tar xfvz %s")] +source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/'] + +patches = ['GATE-%(version)s_Makefile-prefix.patch'] + +dependencies = [ + ('Geant4', '9.5.p01'), + ('CLHEP', '2.1.1.0'), + ('ROOT', 'v5.34.01'), + ('CMake', '2.8.4'), +] + +buildopts = 'V=1 CXX="$CXX" CXXFLAGS="$CXXFLAGS -gcc -DGC_DEFAULT_PLATFORM=\\\'openPBS\\\'" LD="$CXX -L$EBROOTICC/compiler/lib/intel64"' + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2_GCC-4.7.patch b/easybuild/easyconfigs/g/GATE/GATE-6.2_GCC-4.7.patch new file mode 100644 index 0000000000..c06cd2b8e3 --- /dev/null +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2_GCC-4.7.patch @@ -0,0 +1,22 @@ +diff -ru gate_v6.2.orig/source/digits_hits/include/GateMaps.hh gate_v6.2/source/digits_hits/include/GateMaps.hh +--- gate_v6.2.orig/source/digits_hits/include/GateMaps.hh 2012-08-08 13:38:18.000000000 +0200 ++++ gate_v6.2/source/digits_hits/include/GateMaps.hh 2013-03-28 10:50:28.225482716 +0100 +@@ -117,7 +117,7 @@ + for (size_t i=0; i* mapElement = mapArray[i]; + for (iterator iter = mapElement->begin(); iter != mapElement->end(); iter++) +- insert(*iter); ++ this->insert(*iter); + } + } + +--- gate_v6.2/cluster_tools/jobsplitter/include/GateMacfileParser.hh.orig 2014-12-02 11:50:23.586463425 +0100 ++++ gate_v6.2/cluster_tools/jobsplitter/include/GateMacfileParser.hh 2014-12-02 11:51:45.498508680 +0100 +@@ -19,6 +19,7 @@ + #include + #include + #include ++#include + + using namespace std; + diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2_Makefile-prefix.patch b/easybuild/easyconfigs/g/GATE/GATE-6.2_Makefile-prefix.patch new file mode 100644 index 0000000000..8347193f82 --- /dev/null +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2_Makefile-prefix.patch @@ -0,0 +1,46 @@ +--- gate_v6.2/cluster_tools/filemerger/Makefile.orig 2014-12-02 12:00:20.331450693 +0100 ++++ gate_v6.2/cluster_tools/filemerger/Makefile 2014-12-02 12:01:35.263325236 +0100 +@@ -16,6 +16,8 @@ + INCLUDE := -I./include `geant4-config --cflags` `root-config --cflags` + LDFLAGS := `geant4-config --libs` `root-config --glibs` + ++PREFIX := /usr/local ++ + TARGET := gjm + + .PHONY: all clean directories cleanall install uninstall +@@ -49,8 +51,9 @@ + + install: + @echo Installing ... +- @$(CP) $(TARGET) /usr/local/bin ++ mkdir -p $(PREFIX)/bin ++ @$(CP) $(TARGET) $(PREFIX)/bin + + uninstall: + @echo Uninstalling... +- @$(RM) /usr/local/bin/$(TARGET) ++ @$(RM) $(PREFIX)/bin/$(TARGET) +--- gate_v6.2/cluster_tools/jobsplitter/Makefile.orig 2014-12-02 12:01:48.033648372 +0100 ++++ gate_v6.2/cluster_tools/jobsplitter/Makefile 2014-12-02 12:02:32.104712220 +0100 +@@ -16,6 +16,8 @@ + INCLUDE := -I./include `geant4-config --cflags` + LDFLAGS := `geant4-config --libs` + ++PREFIX := /usr/local ++ + TARGET := gjs + + .PHONY: all clean directories cleanall install uninstall +@@ -57,8 +59,9 @@ + + install: + @echo Installing ... +- @$(CP) $(TARGET) /usr/local/bin ++ mkdir -p $(PREFIX)/bin ++ @$(CP) $(TARGET) $(PREFIX)/bin + + uninstall: + @echo Uninstalling... +- @$(RM) /usr/local/bin/$(TARGET) ++ @$(RM) $(PREFIX)/bin/$(TARGET) diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2_unistd.patch b/easybuild/easyconfigs/g/GATE/GATE-6.2_unistd.patch new file mode 100644 index 0000000000..7ebf1af3e5 --- /dev/null +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2_unistd.patch @@ -0,0 +1,10 @@ +--- gate_v6.2/cluster_tools/jobsplitter/include/GateMacfileParser.hh.orig 2014-12-02 11:50:23.586463425 +0100 ++++ gate_v6.2/cluster_tools/jobsplitter/include/GateMacfileParser.hh 2014-12-02 11:51:45.498508680 +0100 +@@ -19,6 +19,7 @@ + #include + #include + #include ++#include + + using namespace std; + diff --git a/easybuild/easyconfigs/g/GATE/GATE-v6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GATE/GATE-v6.2-goalf-1.1.0-no-OFED.eb deleted file mode 100644 index e01cfc2962..0000000000 --- a/easybuild/easyconfigs/g/GATE/GATE-v6.2-goalf-1.1.0-no-OFED.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'GATE' -version = 'v6.2' - -homepage = 'http://www.opengatecollaboration.org/' -description = """GATE is an advanced opensource software developed by the international OpenGATE collaboration and - dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography - (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography""" - -toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} - -sources = [('%s_%s_tar_gz_15843.gz' % (name.lower(), '_'.join(version.split('.'))), "tar xfvz %s")] -source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/'] - -dependencies = [ - ('Geant4', '9.5.p01'), - ('CLHEP', '2.1.1.0'), - ('ROOT', 'v5.34.01'), - ('CMake', '2.8.4'), - ] - -sanity_check_paths = { - 'files': ["bin/Gate"] + - ["Utilities/itkzlib/%s" % x for x in ['itk_zlib_mangle.h', 'zconf.h', - 'zlibDllConfig.h', 'zlib.h']] + - ["Utilities/MetaIO/%s" % x for x in ['localMetaConfiguration.h', 'metaDTITube.h', - 'metaImage.h', 'metaMesh.h', 'metaTubeGraph.h', - 'metaUtils.h']], - 'dirs' : [], - } - -moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/GATE/GATE-v6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GATE/GATE-v6.2-goolf-1.4.10.eb deleted file mode 100644 index cb389a2ba2..0000000000 --- a/easybuild/easyconfigs/g/GATE/GATE-v6.2-goolf-1.4.10.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'GATE' -version = 'v6.2' - -homepage = 'http://www.opengatecollaboration.org/' -description = """GATE is an advanced opensource software developed by the international OpenGATE collaboration and -dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography -(Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography""" -toolchain = {'name': 'goolf', 'version': '1.4.10'} - -sources = [('%s_%s_tar_gz_15843.gz' % (name.lower(), '_'.join(version.split('.'))), "tar xfvz %s")] -source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/'] - -patches = ['GATE-v6.2_GCC-4.7.patch'] - -dependencies = [ - ('Geant4', '9.5.p01'), - ('CLHEP', '2.1.1.0'), - ('ROOT', 'v5.34.01'), - ('CMake', '2.8.4'), - ] - -sanity_check_paths = { - 'files': ["bin/Gate"] + - ["Utilities/itkzlib/%s" % x for x in ['itk_zlib_mangle.h', 'zconf.h', - 'zlibDllConfig.h', 'zlib.h']] + - ["Utilities/MetaIO/%s" % x for x in ['localMetaConfiguration.h', 'metaDTITube.h', - 'metaImage.h', 'metaMesh.h', 'metaTubeGraph.h', - 'metaUtils.h']], - 'dirs' : [], - } - -moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/GATE/GATE-v6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GATE/GATE-v6.2-ictce-4.0.6.eb deleted file mode 100644 index 445c274e36..0000000000 --- a/easybuild/easyconfigs/g/GATE/GATE-v6.2-ictce-4.0.6.eb +++ /dev/null @@ -1,33 +0,0 @@ -easyblock = 'CMakeMake' - -name = 'GATE' -version = 'v6.2' - -homepage = 'http://www.opengatecollaboration.org/' -description = """GATE is an advanced opensource software developed by the international OpenGATE collaboration and - dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography - (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography""" - -toolchain = {'name': 'ictce', 'version': '4.0.6'} - -sources = [('%s_%s_tar_gz_15843.gz' % (name.lower(), '_'.join(version.split('.'))), "tar xfvz %s")] -source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/'] - -dependencies = [ - ('Geant4', '9.5.p01'), - ('CLHEP', '2.1.1.0'), - ('ROOT', 'v5.34.01'), - ('CMake', '2.8.4'), - ] - -sanity_check_paths = { - 'files': ["bin/Gate"] + - ["Utilities/itkzlib/%s" % x for x in ['itk_zlib_mangle.h', 'zconf.h', - 'zlibDllConfig.h', 'zlib.h']] + - ["Utilities/MetaIO/%s" % x for x in ['localMetaConfiguration.h', 'metaDTITube.h', - 'metaImage.h', 'metaMesh.h', 'metaTubeGraph.h', - 'metaUtils.h']], - 'dirs' : [], - } - -moduleclass = 'cae' -- GitLab From 26dba32df2bd3d77bec63a421019d1b802378f74 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 5 Dec 2014 19:28:46 +0100 Subject: [PATCH 0147/1217] add easyconfig for GATE v6.1 with ictce/4.0.6 --- .../g/GATE/GATE-6.1-ictce-4.0.6.eb | 26 +++++++++++++++++++ .../g/Geant4/Geant4-9.4.p02-ictce-4.0.6.eb | 24 +++++++++++++++++ 2 files changed, 50 insertions(+) create mode 100644 easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb create mode 100644 easybuild/easyconfigs/g/Geant4/Geant4-9.4.p02-ictce-4.0.6.eb diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb new file mode 100644 index 0000000000..eeb8aa96e3 --- /dev/null +++ b/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb @@ -0,0 +1,26 @@ +name = 'GATE' +version = '6.1' + +homepage = 'http://www.opengatecollaboration.org/' +description = """GATE is an advanced opensource software developed by the international OpenGATE collaboration and + dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography + (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography""" + +toolchain = {'name': 'ictce', 'version': '4.0.6'} + +sources = [('%%(namelower)s_v%s_tar_gz_98524.gz' % '_'.join(version.split('.')), "tar xfvz %s")] +source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2011/03/'] + +dependencies = [ + ('Geant4', '9.4.p02'), + ('CLHEP', '2.1.1.0'), + ('ROOT', 'v5.34.01'), + ('CMake', '2.8.4'), +# ('libXt', '1.1.4'), +] + +buildopts = "CPATH=$EBROOTROOT/include/root:$CPATH" + +parallel = 1 + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/Geant4/Geant4-9.4.p02-ictce-4.0.6.eb b/easybuild/easyconfigs/g/Geant4/Geant4-9.4.p02-ictce-4.0.6.eb new file mode 100644 index 0000000000..32054f56b5 --- /dev/null +++ b/easybuild/easyconfigs/g/Geant4/Geant4-9.4.p02-ictce-4.0.6.eb @@ -0,0 +1,24 @@ +name = 'Geant4' +version = '9.4.p02' + +homepage = 'http://geant4.cern.ch/' +description = """Geant4 is a toolkit for the simulation of the passage of particles through matter. + Its areas of application include high energy, nuclear and accelerator physics, + as well as studies in medical and space science.""" + +toolchain = {'name': 'ictce', 'version':'4.0.6'} + +source_urls = ['http://geant4.cern.ch/support/source'] +sources = ['%(namelower)s.%(version)s.tar.gz'] + +dependencies = [ + ('expat', '2.1.0'), + ('CLHEP', '2.1.1.0'), +] + +builddependencies = [('CMake', '2.8.4')] + +configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" +configopts += "-DGEANT4_INSTALL_DATA=OFF" + +moduleclass = 'phys' -- GitLab From 90ff35886023d24e45c7ec87ecb8b0834b6a69ae Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 8 Dec 2014 17:23:29 +0100 Subject: [PATCH 0148/1217] Add Cairo 1.12.18 for intel/2014b --- .../c/cairo/cairo-1.12.18-intel-2014b.eb | 24 +++++++++++++++++++ .../e/expat/expat-2.1.0-intel-2014b.eb | 13 ++++++++++ .../fontconfig-2.11.1-intel-2014b.eb | 15 ++++++++++++ .../f/freetype/freetype-2.5.3-ictce-6.2.5.eb | 21 ++++++++++++++++ .../p/pixman/pixman-0.32.6-intel-2014b.eb | 18 ++++++++++++++ 5 files changed, 91 insertions(+) create mode 100644 easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb create mode 100644 easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb create mode 100644 easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb create mode 100644 easybuild/easyconfigs/f/freetype/freetype-2.5.3-ictce-6.2.5.eb create mode 100644 easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb new file mode 100644 index 0000000000..6e47d0bc01 --- /dev/null +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb @@ -0,0 +1,24 @@ +name = "cairo" +version = '1.12.18' + +homepage = 'http://cairographics.org' +description = """Cairo is a 2D graphics library with support for multiple output devices. +Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, +PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://cairographics.org/releases/'] +sources = [SOURCE_TAR_XZ] + +dependencies = [ + ('libpng', '1.6.12'), + ('freetype', '2.5.3'), + ('zlib', '1.2.8'), + ('pixman', '0.32.6'), + ('fontconfig', '2.11.1'), + ('expat', '2.1.0'), + ('bzip2', '1.0.6'), +] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb new file mode 100644 index 0000000000..2260696155 --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb @@ -0,0 +1,13 @@ +name = 'expat' +version = '2.1.0' + +homepage = 'http://expat.sourceforge.net/' +description = """Expat is an XML parser library written in C. It is a stream-oriented parser in which an application + registers handlers for things the parser might find in the XML document (like start tags)""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb new file mode 100644 index 0000000000..32d422ed31 --- /dev/null +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb @@ -0,0 +1,15 @@ +name = "fontconfig" +version = '2.11.1' + +homepage = 'http://www.freedesktop.org/software/fontconfig' +description = """Fontconfig is a library designed to provide system-wide font configuration, customization and +application access.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://www.freedesktop.org/software/fontconfig/release/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [('expat', '2.1.0')] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-ictce-6.2.5.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-ictce-6.2.5.eb new file mode 100644 index 0000000000..77581cfac2 --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-ictce-6.2.5.eb @@ -0,0 +1,21 @@ +name = 'freetype' +version = '2.5.3' + +homepage = 'http://freetype.org' +description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and + portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display + servers, font conversion tools, text image generation tools, and many other products as well.""" + +toolchain = {'name': 'ictce', 'version': '6.2.5'} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('libpng', '1.6.12')] + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb b/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb new file mode 100644 index 0000000000..681e7f4094 --- /dev/null +++ b/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb @@ -0,0 +1,18 @@ +name = "pixman" +version = '0.32.6' + +homepage = 'http://www.pixman.org/' +description = """Pixman is a low-level software library for pixel manipulation, providing features such as image +compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://cairographics.org/releases/'] +sources = [SOURCE_TAR_GZ] + +sanity_check_paths = { + 'files': ['lib/libpixman-1.so'], + 'dirs': [] +} + +moduleclass = 'vis' -- GitLab From fbf0b170b124ce6cbff69878a3f2cfc0fa4f76b7 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 8 Dec 2014 17:23:58 +0100 Subject: [PATCH 0149/1217] Add gnuplot 4.6.6 with cairo --- .../g/gnuplot/gnuplot-4.6.6-intel-2014b.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb new file mode 100644 index 0000000000..ec081dd4ac --- /dev/null +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb @@ -0,0 +1,34 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html +## + +name = 'gnuplot' +version = '4.6.6' + +homepage = 'http://gnuplot.sourceforge.net/' +description = """Portable interactive, function plotting utility""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/gnuplot/files', 'download')] + +dependencies = [ + ('cairo', '1.12.18'), + ('libjpeg-turbo', '1.3.1'), +] + +sanity_check_paths = { + 'files': ['bin/gnuplot'], + 'dirs': [] +} + +moduleclass = 'vis' -- GitLab From 78403ef14b3864a50fafebe4ecba5f73bde1fd3b Mon Sep 17 00:00:00 2001 From: Bart Verleye Date: Tue, 9 Dec 2014 16:48:26 +1300 Subject: [PATCH 0150/1217] Adding ANTs --- .../ANTs-v2.1.0rc3-82-ga1547fe-goolf-1.5.14.eb | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 easybuild/easyconfigs/a/ANTs/ANTs-v2.1.0rc3-82-ga1547fe-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/a/ANTs/ANTs-v2.1.0rc3-82-ga1547fe-goolf-1.5.14.eb b/easybuild/easyconfigs/a/ANTs/ANTs-v2.1.0rc3-82-ga1547fe-goolf-1.5.14.eb new file mode 100644 index 0000000000..c4a05245f1 --- /dev/null +++ b/easybuild/easyconfigs/a/ANTs/ANTs-v2.1.0rc3-82-ga1547fe-goolf-1.5.14.eb @@ -0,0 +1,17 @@ +name = 'ANTs' +version = '2.1.0rc3-82-ga1547fe' + +homepage = 'http://stnava.github.io/ANTs/' +description = """ANTs extracts information from complex datasets that include imaging. ANTs is useful for managing, interpreting and visualizing multidimensional data.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True} +easyblock = 'CMakeMake' + +sources = ['stnava-ANTs-v%(version)s.tar.gz'] + +skipsteps = ['install'] +buildopts = ' && cp -r * %(installdir)s' +builddependencies = [('CMake', '2.8.12')] +configopts = "-DCMAKE_C_COMPILER=`which gcc` -DCMAKE_CXX_COMPILER=`which g++`" +separate_build_dir = True -- GitLab From 0f86d165a7ed96bea7324e1c1698940d8e4db624 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Tue, 9 Dec 2014 09:43:56 +0100 Subject: [PATCH 0151/1217] Ruby 2.1.5. with intel2014b --- .../r/Ruby/Ruby-2.1.5-intel-2014b.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb new file mode 100644 index 0000000000..643d229d54 --- /dev/null +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb @@ -0,0 +1,31 @@ +# With <3 for EasyBuild +# +# EasyConfig for Ruby 2.1: +# ---------------------------------------------------------------------------- +# Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH +# License: MIT +# Authors: Aaron Zauner +# ---------------------------------------------------------------------------- +name = 'Ruby' +version = '2.1.5' + +homepage = 'https://www.ruby-lang.org' +description = """Ruby is a dynamic, open source programming language with + a focus on simplicity and productivity. It has an elegant syntax that is + natural to read and easy to write.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://cache.ruby-lang.org/pub/ruby/'] + +sanity_check_paths = { + 'files': ['bin/ruby', 'bin/rake', 'bin/gem', 'bin/testrb', 'bin/erb', + 'bin/ri', 'bin/irb', 'bin/rdoc', 'lib/libruby.so.2.1.0', + 'lib/libruby-static.a', 'lib/libruby.so'], + 'dirs': ['lib/ruby/2.1.0', 'lib/ruby/gems', 'lib/pkgconfig', 'include/ruby-2.1.0'] +} + +configopts = "--disable-install-doc --enable-shared" + +moduleclass = 'lang' -- GitLab From c6541bed9ebc38da66e69392aaa246699e025d75 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 9 Dec 2014 09:52:40 +0100 Subject: [PATCH 0152/1217] Deleted wrong easyconfig --- .../f/freetype/freetype-2.5.3-ictce-6.2.5.eb | 21 ------------------- 1 file changed, 21 deletions(-) delete mode 100644 easybuild/easyconfigs/f/freetype/freetype-2.5.3-ictce-6.2.5.eb diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-ictce-6.2.5.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-ictce-6.2.5.eb deleted file mode 100644 index 77581cfac2..0000000000 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-ictce-6.2.5.eb +++ /dev/null @@ -1,21 +0,0 @@ -name = 'freetype' -version = '2.5.3' - -homepage = 'http://freetype.org' -description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and - portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display - servers, font conversion tools, text image generation tools, and many other products as well.""" - -toolchain = {'name': 'ictce', 'version': '6.2.5'} - -source_urls = [GNU_SAVANNAH_SOURCE] -sources = [SOURCE_TAR_GZ] - -dependencies = [('libpng', '1.6.12')] - -sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], - 'dirs': ['include/freetype2'], -} - -moduleclass = 'vis' -- GitLab From d9fc45bf3e4ea512c65548718682fbee977e2b56 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 9 Dec 2014 09:57:56 +0100 Subject: [PATCH 0153/1217] style fixes in Geant4 v9.5 easyconfigs + add CMake as build dep --- .../g/Geant4/Geant4-9.5.p01-goalf-1.1.0-no-OFED.eb | 11 +++++++---- .../g/Geant4/Geant4-9.5.p01-goolf-1.4.10.eb | 11 +++++++---- .../g/Geant4/Geant4-9.5.p01-ictce-4.0.6.eb | 11 +++++++---- .../g/Geant4/Geant4-9.5.p01-ictce-5.3.0.eb | 12 +++++++----- 4 files changed, 28 insertions(+), 17 deletions(-) diff --git a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goalf-1.1.0-no-OFED.eb index a80453f4b8..b6f358819f 100644 --- a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goalf-1.1.0-no-OFED.eb @@ -8,13 +8,16 @@ description = """Geant4 is a toolkit for the simulation of the passage of partic toolchain = {'name': 'goalf', 'version':'1.1.0-no-OFED'} -sources = ['%s.%s.tar.gz' % (name.lower(), version)] source_urls = ['http://geant4.cern.ch/support/source'] +sources = ['%(namelower)s.%(version)s.tar.gz'] dependencies = [ - ('expat', '2.1.0'), - ('CMake', '2.8.4'), - ] + ('expat', '2.1.0'), + ('CLHEP', '2.1.1.0'), +] + +builddependencies = [('CMake', '2.8.4')] + configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" configopts += "-DGEANT4_INSTALL_DATA=OFF" diff --git a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goolf-1.4.10.eb b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goolf-1.4.10.eb index 28ffc95277..7db2e910b2 100644 --- a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goolf-1.4.10.eb @@ -8,13 +8,16 @@ description = """Geant4 is a toolkit for the simulation of the passage of partic toolchain = {'name': 'goolf', 'version': '1.4.10'} -sources = ['%s.%s.tar.gz' % (name.lower(), version)] source_urls = ['http://geant4.cern.ch/support/source'] +sources = ['%(namelower)s.%(version)s.tar.gz'] dependencies = [ - ('expat', '2.1.0'), - ('CMake', '2.8.4'), - ] + ('expat', '2.1.0'), + ('CLHEP', '2.1.1.0'), +] + +builddependencies = [('CMake', '2.8.4')] + configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" configopts += "-DGEANT4_INSTALL_DATA=OFF" diff --git a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-4.0.6.eb b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-4.0.6.eb index b430f09f38..d2acaf5f1d 100644 --- a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-4.0.6.eb @@ -8,13 +8,16 @@ description = """Geant4 is a toolkit for the simulation of the passage of partic toolchain = {'name': 'ictce', 'version':'4.0.6'} -sources = ['%s.%s.tar.gz' % (name.lower(), version)] source_urls = ['http://geant4.cern.ch/support/source'] +sources = ['%(namelower)s.%(version)s.tar.gz'] dependencies = [ - ('expat', '2.1.0'), - ('CMake', '2.8.4'), - ] + ('expat', '2.1.0'), + ('CLHEP', '2.1.1.0'), +] + +builddependencies = [('CMake', '2.8.4')] + configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" configopts += "-DGEANT4_INSTALL_DATA=OFF" diff --git a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-5.3.0.eb b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-5.3.0.eb index 816b287e43..cbe91d153a 100644 --- a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-5.3.0.eb @@ -6,16 +6,18 @@ description = """Geant4 is a toolkit for the simulation of the passage of partic Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.""" - toolchain = {'name': 'ictce', 'version': '5.3.0'} -sources = ['%s.%s.tar.gz' % (name.lower(), version)] source_urls = ['http://geant4.cern.ch/support/source'] +sources = ['%(namelower)s.%(version)s.tar.gz'] dependencies = [ - ('expat', '2.1.0'), - ('CMake', '2.8.4'), - ] + ('expat', '2.1.0'), + ('CLHEP', '2.1.1.0'), +] + +builddependencies = [('CMake', '2.8.4')] + configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" configopts += "-DGEANT4_INSTALL_DATA=OFF" -- GitLab From 688f66e6cb64607a12d8484c2a2805b275feebd7 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Tue, 9 Dec 2014 10:26:25 +0100 Subject: [PATCH 0154/1217] cairo bumped to 1.12.18 --- ...airo-1.12.14-intel-2014b.eb => cairo-1.12.18-intel-2014b.eb} | 2 +- .../easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb | 2 +- easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb | 2 +- easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb | 2 +- easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb | 2 +- 5 files changed, 5 insertions(+), 5 deletions(-) rename easybuild/easyconfigs/c/cairo/{cairo-1.12.14-intel-2014b.eb => cairo-1.12.18-intel-2014b.eb} (97%) diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-intel-2014b.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb similarity index 97% rename from easybuild/easyconfigs/c/cairo/cairo-1.12.14-intel-2014b.eb rename to easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb index 6847e5c28e..6e47d0bc01 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-intel-2014b.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb @@ -1,5 +1,5 @@ name = "cairo" -version = '1.12.14' +version = '1.12.18' homepage = 'http://cairographics.org' description = """Cairo is a 2D graphics library with support for multiple output devices. diff --git a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb index 6ba7b8c745..594e6f8142 100644 --- a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb +++ b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb @@ -18,7 +18,7 @@ dependencies = [ ('libjpeg-turbo', '1.3.1'), ('libpng', '1.6.12'), ('expat', '2.1.0'), - ('cairo', '1.12.14'), + ('cairo', '1.12.18'), ('LibTIFF', '4.0.3'), ('zlib', '1.2.8'), ] diff --git a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb index f8754abe7f..f87c237077 100644 --- a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb +++ b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb @@ -17,7 +17,7 @@ python = "Python" pythonversion = '2.7.8' dependencies = [ - ('cairo', '1.12.14'), + ('cairo', '1.12.18'), ('expat', '2.1.0'), ('freetype', '2.5.3'), ('fontconfig', '2.11.1'), diff --git a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb index 633f72299d..f608dab2a5 100644 --- a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb +++ b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb @@ -10,7 +10,7 @@ source_urls = ['http://www.freedesktop.org/software/harfbuzz/release/'] sources = [SOURCELOWER_TAR_BZ2] dependencies = [ - ('cairo', '1.12.14'), + ('cairo', '1.12.18'), ('GObject-Introspection', '1.42.0'), ] diff --git a/easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb b/easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb index cef02d6f33..0cadb6fba6 100644 --- a/easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb @@ -14,7 +14,7 @@ source_urls = ['http://ftp.gnome.org/pub/GNOME/sources/pango/%(version_major_min sources = [SOURCELOWER_TAR_XZ] dependencies = [ - ('cairo', '1.12.14'), + ('cairo', '1.12.18'), ('fontconfig', '2.11.1'), ('freetype', '2.5.3'), ('GLib', '2.40.0'), -- GitLab From 8bc58af6811f3d8baa8e3f99bc9df12ca716c392 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 9 Dec 2014 10:27:02 +0100 Subject: [PATCH 0155/1217] Added HPL for new toolchains intel-2014.10 intel-2014.11 --- .../easyconfigs/h/HPL/HPL-2.1-intel-2014.10.eb | 18 ++++++++++++++++++ .../easyconfigs/h/HPL/HPL-2.1-intel-2014.11.eb | 18 ++++++++++++++++++ 2 files changed, 36 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.10.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.11.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.10.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.10.eb new file mode 100644 index 0000000000..4c3646267b --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.10.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'intel', 'version': '2014.10'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.11.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.11.eb new file mode 100644 index 0000000000..4e8b437981 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.11.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'intel', 'version': '2014.11'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' -- GitLab From e35a82f402368f1fa1fedb4d59955a319f4ddfe8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 9 Dec 2014 11:36:27 +0100 Subject: [PATCH 0156/1217] add easyconfig for BEDTools v2.22.0 with intel/2014b --- .../b/BEDTools/BEDTools-2.22.0-intel-2014b.eb | 27 +++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb new file mode 100644 index 0000000000..34f059db37 --- /dev/null +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb @@ -0,0 +1,27 @@ +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics (SIB) +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'BEDTools' +version = '2.22.0' + +homepage = "https://github.com/arq5x/bedtools2" +description = """The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps + and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, + and SAM/BAM.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['https://github.com/arq5x/bedtools2/archive/'] +sources = ['v%(version)s.tar.gz'] + +files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], + 'dirs': files_to_copy, +} + +moduleclass = 'bio' -- GitLab From 34aedb8bdeebc3352c1b6162edeb38aceaa3af37 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bal=C3=A1zs=20Hajgat=C3=B3?= Date: Tue, 9 Dec 2014 12:40:33 +0100 Subject: [PATCH 0157/1217] Dependencies in separate lines --- .../x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb index 2db4eafe52..744de7be27 100644 --- a/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb +++ b/easybuild/easyconfigs/x/XML-Dumper/XML-Dumper-0.81-intel-2014b-Perl-5.20.0.eb @@ -16,7 +16,10 @@ perl = 'Perl' perlver = '5.20.0' versionsuffix = '-%s-%s' % (perl, perlver) -dependencies = [(perl, perlver), ('XML-Parser', '2.41', versionsuffix)] +dependencies = [ + (perl, perlver), + ('XML-Parser', '2.41', versionsuffix) +] options = {'modulename': 'XML::Dumper'} -- GitLab From 34e016d8344ac217931fb6ff09def5000e8b6b44 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bal=C3=A1zs=20Hajgat=C3=B3?= Date: Tue, 9 Dec 2014 12:41:25 +0100 Subject: [PATCH 0158/1217] Dependencies in separate lines --- .../x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb index 8c386ffb9d..95ee785c73 100644 --- a/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb +++ b/easybuild/easyconfigs/x/XML-Parser/XML-Parser-2.41-intel-2014b-Perl-5.20.0.eb @@ -14,7 +14,10 @@ perl = 'Perl' perlver = '5.20.0' versionsuffix = '-%s-%s' % (perl, perlver) -dependencies = [(perl, perlver),('expat', '2.1.0')] +dependencies = [ + (perl, perlver), + ('expat', '2.1.0') +] options = {'modulename': 'XML::Parser'} -- GitLab From ab1dc471670ec9075337bca27a622dee7c310c57 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bal=C3=A1zs=20Hajgat=C3=B3?= Date: Tue, 9 Dec 2014 12:42:06 +0100 Subject: [PATCH 0159/1217] Dependencies in separate lines --- .../x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb index 7157ef0483..41318259ee 100644 --- a/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb +++ b/easybuild/easyconfigs/x/XML-Twig/XML-Twig-3.48-intel-2014b-Perl-5.20.0.eb @@ -14,7 +14,10 @@ perl = 'Perl' perlver = '5.20.0' versionsuffix = '-%s-%s' % (perl, perlver) -dependencies = [(perl, perlver), ('XML-Parser', '2.41', versionsuffix)] +dependencies = [ + (perl, perlver), + ('XML-Parser', '2.41', versionsuffix) +] options = {'modulename': 'XML::Twig'} -- GitLab From 00a6bcc8a5ec4d7c0ed2dbe41e6fb09630e1e2f0 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 9 Dec 2014 16:16:49 +0100 Subject: [PATCH 0160/1217] add buildopts to make sure right compiler is used --- .../easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb | 2 ++ .../easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb | 2 ++ .../easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb | 2 ++ 4 files changed, 8 insertions(+) diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb index 6cb0f4b818..acb234afd4 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb @@ -13,6 +13,8 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ["http://bedtools.googlecode.com/files/"] sources = ['%(name)s.v%(version)s.tar.gz'] +buildopts = 'CXX="$CXX"' + files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb index 3cb9f10e2d..8b2873ae74 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb @@ -13,6 +13,8 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} source_urls = ["http://bedtools.googlecode.com/files/"] sources = ['%(name)s.v%(version)s.tar.gz'] +buildopts = 'CXX="$CXX"' + files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb index d45afb71d9..22c311e675 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb @@ -17,6 +17,8 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['https://github.com/arq5x/bedtools2/archive/'] sources = ['v%(version)s.tar.gz'] +buildopts = 'CXX="$CXX"' + files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb index 34f059db37..eff9f8d9ca 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb @@ -17,6 +17,8 @@ toolchain = {'name': 'intel', 'version': '2014b'} source_urls = ['https://github.com/arq5x/bedtools2/archive/'] sources = ['v%(version)s.tar.gz'] +buildopts = 'CXX="$CXX"' + files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] sanity_check_paths = { -- GitLab From 391d575f111397fca1857de0f57c2431e957a211 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 9 Dec 2014 16:44:09 +0100 Subject: [PATCH 0161/1217] style fixes --- .../easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb | 1 + .../easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb | 1 + easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb | 2 +- easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb | 1 + .../i/inputproto/inputproto-2.3-foss-2014b.eb | 3 ++- .../easyconfigs/k/kbproto/kbproto-1.0.6-foss-2014b.eb | 3 ++- .../l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb | 3 ++- .../libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb | 9 +++++---- .../libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb | 9 +++++---- .../l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb | 1 + .../easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb | 3 --- .../easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb | 3 --- .../easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb | 3 --- easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb | 4 ++-- easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb | 4 ++-- .../RELION/{fltk.patch => RELION-1.3_fltk-config.patch} | 0 easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb | 3 ++- easybuild/easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb | 2 -- .../xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb | 3 ++- .../x/xextproto/xextproto-7.3.0-foss-2014b.eb | 1 - .../x/xextproto/xextproto-7.3.0-intel-2014b.eb | 2 +- 21 files changed, 30 insertions(+), 31 deletions(-) rename easybuild/easyconfigs/r/RELION/{fltk.patch => RELION-1.3_fltk-config.patch} (100%) diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb b/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb index 7ef30b2145..04b0fb3cde 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb @@ -12,6 +12,7 @@ toolchain = {'name': 'foss', 'version': '2014b'} dependencies = [ ('zlib', '1.2.8'), ] + binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb b/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb index de386edb2a..772e2fbf30 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb @@ -12,6 +12,7 @@ toolchain = {'name': 'intel', 'version': '2014b'} dependencies = [ ('zlib', '1.2.8'), ] + binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb index 2bb6c7e2c6..558d7de0dd 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -common_configopts = "--enable-openmp --with-pic --enable-threads" +common_configopts = "--enable-threads --enable-openmp --with-pic" configopts = [ common_configopts + " --enable-single --enable-sse2 --enable-mpi", diff --git a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb index 3f10ddb0c9..57b2aec7a6 100644 --- a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb +++ b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb @@ -8,6 +8,7 @@ homepage = 'http://www.fltk.org' description = """FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.""" + toolchain = {'name': 'foss', 'version': '2014b'} toolchainopts = {'optarch': True, 'pic': True} diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-foss-2014b.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-foss-2014b.eb index 3281581171..43dc2abd21 100644 --- a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-foss-2014b.eb +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-foss-2014b.eb @@ -3,7 +3,8 @@ version = '2.3' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """X.org InputProto protocol headers.""" -toolchain = {'name': 'foss', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'goolf', 'version': '1.4.10'}) + +toolchain = {'name': 'foss', 'version': '2014b'} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-foss-2014b.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-foss-2014b.eb index fffe3fa604..eb388209ba 100644 --- a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-foss-2014b.eb +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-foss-2014b.eb @@ -3,7 +3,8 @@ version = '1.0.6' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """X.org KBProto protocol headers.""" -toolchain = {'name': 'foss', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'goolf', 'version': '1.4.10'}) + +toolchain = {'name': 'foss', 'version': '2014b'} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb index 74cf24ada8..f3e90fc998 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb @@ -1,14 +1,15 @@ name = 'libX11' version = '1.6.2' +versionsuffix = '-Python-2.7.8' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """X11 client-side library""" + toolchain = {'name': 'intel', 'version': '2014b'} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] -versionsuffix = '-Python-2.7.8' builddependencies = [ ('xextproto', '7.3.0'), ('xcb-proto', '1.10', versionsuffix), diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb index 42d6158ae8..94b729f502 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb @@ -7,11 +7,12 @@ latency hiding, direct access to the protocol, improved threading support, and e source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] -toolchain = {'name': 'foss', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'goolf', 'version': '1.4.10'}) + +toolchain = {'name': 'foss', 'version': '2014b'} sanity_check_paths = { - 'files' : ['lib/pkgconfig/pthread-stubs.pc'], - 'dirs': [] - } + 'files' : ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [] , +} moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb index 8159c829e9..2375946691 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb @@ -7,11 +7,12 @@ latency hiding, direct access to the protocol, improved threading support, and e source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] -toolchain = {'name': 'intel', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'foss', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'goolf', 'version': '1.4.10'})) + +toolchain = {'name': 'intel', 'version': '2014b'} sanity_check_paths = { - 'files' : ['lib/pkgconfig/pthread-stubs.pc'], - 'dirs': [] - } + 'files' : ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [] , +} moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb index aece689ecb..97a14be2f4 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb @@ -4,6 +4,7 @@ version = '1.10' homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + toolchain = {'name': 'intel', 'version': '2014b'} source_urls = ['http://xcb.freedesktop.org/dist/'] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb index bbdb9b70bf..dd7a8d8f1e 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb @@ -90,9 +90,6 @@ exts_list = [ ('pyparsing', '2.0.2', { 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], }), - ('matplotlib', '1.3.1', { - 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib/'], - }), ] osdependencies = [('openssl-devel', 'libssl-dev')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb index fc03cf9418..64f8e11174 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb @@ -87,9 +87,6 @@ exts_list = [ ('pyparsing', '2.0.2', { 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], }), - ('matplotlib', '1.3.1', { - 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib/'], - }), ] osdependencies = [('openssl-devel', 'libssl-dev')] diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb index 598966430c..df2e52ef20 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb @@ -89,9 +89,6 @@ exts_list = [ ('pyparsing', '2.0.2', { 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], }), - ('matplotlib', '1.3.1', { - 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib/'], - }), ] osdependencies = [('openssl-devel', 'libssl-dev')] diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb index 41571de337..5f73c5cbb8 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb @@ -12,6 +12,8 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = ['http://www2.mrc-lmb.cam.ac.uk/groups/scheres/18jun14'] sources = [SOURCELOWER_TAR_BZ2] +patches = ['RELION-%(version)s_fltk-config.patch'] + pythonversion = '-Python-2.7.8' builddependencies = [ ('xextproto', '7.3.0'), @@ -25,8 +27,6 @@ dependencies = [ ('libXinerama', '1.1.3'), ] -patches = ['fltk.patch'] - # RELION expects FLTK to be in external/fltk-1.3.0 configopts = ['--enable-mpi --enable-openmp && ln -s $EBROOTFLTK/include external/fltk-1.3.0'] makeopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11 -lXft -lfontconfig -lXext -lXinerama" ' diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb index baeb0f4e9d..38ac0e7bd3 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb @@ -11,6 +11,8 @@ toolchain = {'name': 'intel', 'version': '2014b'} source_urls = ['http://www2.mrc-lmb.cam.ac.uk/groups/scheres/18jun14'] sources = [SOURCELOWER_TAR_BZ2] +patches = ['RELION-%(version)s_fltk-config.patch'] + pythonversion = '-Python-2.7.8' builddependencies = [ @@ -26,8 +28,6 @@ dependencies = [ ('libXinerama', '1.1.3'), ] -patches = ['fltk.patch'] - # RELION expects FLTK to be in external/fltk-1.3.0 configopts = ['--enable-mpi --enable-openmp && ln -s $EBROOTFLTK/include external/fltk-1.3.0'] makeopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11 -lXft -lfontconfig -lXext -lXinerama" ' diff --git a/easybuild/easyconfigs/r/RELION/fltk.patch b/easybuild/easyconfigs/r/RELION/RELION-1.3_fltk-config.patch similarity index 100% rename from easybuild/easyconfigs/r/RELION/fltk.patch rename to easybuild/easyconfigs/r/RELION/RELION-1.3_fltk-config.patch diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb index 0ce3fc7643..95b5419032 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb @@ -4,7 +4,8 @@ version = '8.5.12' homepage = 'http://www.tcl.tk/' description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" -toolchain = {'name': 'foss', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'intel', 'version': '2014b'}) + +toolchain = {'name': 'foss', 'version': '2014b'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb index a48ecee8fa..44b2a3684d 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb @@ -10,8 +10,6 @@ toolchain = {'name': 'foss', 'version': '2014b'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] - - dependencies = [ ('Tcl', version), ('libX11', '1.6.2', '-Python-2.7.8'), diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb index 172dd2fb86..562fed8e6a 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb @@ -5,9 +5,10 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" +toolchain = {'name': 'intel', 'version': '2014b'} + source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] -toolchain = {'name': 'intel', 'version': '2014b'} python = 'Python' pyver = '2.7.8' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb index 627563a2d2..89156b2491 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb @@ -10,7 +10,6 @@ toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] - sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb index ef12a43ad4..384374b9fd 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb @@ -3,13 +3,13 @@ version = '7.3.0' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """XExtProto protocol headers.""" + toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] - sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', -- GitLab From 9b371fbf60d8841df64e30c53610f9bce8bec5ea Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 9 Dec 2014 19:38:27 +0100 Subject: [PATCH 0162/1217] fotis@cern.ch Signed-off-by: Fotis Georgatos --- .../easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb | 2 +- .../easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb | 2 +- .../easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb | 2 +- .../a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb | 2 +- .../a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb | 2 +- .../easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb | 2 +- .../easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb | 2 +- .../a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb | 2 +- easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb | 2 +- .../easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb | 2 +- .../easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb | 2 +- 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easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb | 2 +- .../easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb | 2 +- 392 files changed, 392 insertions(+), 392 deletions(-) diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb index ee0b20850f..536139d9d4 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb index 3ee5efaf98..da282b6c20 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb index b845af54b0..49c2d80186 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 4bacbecb24..0e22981c6b 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb index c09d32e592..013240a0e9 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb index d7bb262bc9..c3eecb2d44 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb index dc3d70166d..30c0dccb25 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb index 3d65bd4489..04503f66f2 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb index 7f8e82a632..0a3cc12b10 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb index 164d45803e..be3fe7e4e9 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb index f67605a5a9..ea837ed663 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb index 1d43952507..75e6529a95 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb index 8dced5a5fc..ce9de3b69a 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb index 4ce71128df..d52e7d9d65 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb index e10d946779..a837fc40fb 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb index 6a66db0401..a86350896c 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb index 60bb667379..85f6f63617 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb index 8b02799901..3f357ee837 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb index db57109965..9f95152a94 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb index 6c70dd1cd6..ad55165823 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb index f1ed26f41e..b4c672d2a0 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb index 85a8aac89e..43ba4d46d7 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb index 1a8b5ec4d6..95665717bb 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb index 8b4d01b9b2..05bbe83af2 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb index 63f01b0750..989331cc66 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb index fa8cdef744..e10aa0963c 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb index 31a4a9ac6c..638cf2d850 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb index 4f65791b19..b0ad7bf9e4 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb index 8e068d5f72..1efd2623b8 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb index d458b8f301..b96067f296 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb index fe0a286ad3..9b4b3f3a22 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb index 306c46ed8f..d9082a80ca 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb index 0b8bf4f532..d16fb1017b 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb index 7cb743172e..8544accef6 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb index c47027ea8a..11faff0a14 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb index 90385b0148..893fe9f80d 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) +# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb index 9e1e4354ea..0dae0006bb 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) +# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb index 5645d75771..83b55084d5 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) +# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb index 04e98c09c5..fa21f6b50a 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) +# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb index badc8f717a..9be8a1e58c 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) +# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb index 4a6ef0c31d..f70399e48b 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb index 111de5e9ec..65ec834a01 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb index 8384386ee6..1036a9b226 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb index 560bbac34f..2a0a32b51c 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb index 60df95c84a..c08fecd9c1 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos +# Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb index 03f79756d9..426e2badd7 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos +# Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb index d9514b2450..3914d163b9 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos +# Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb index f2eec4ae3c..57f7ce2b06 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos +# Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb index 15eee3a6b7..9dfdb88dc4 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb index 00dc69f950..bc25ea916c 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb index b0b5384914..9ff5742d8b 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb index 23c215e249..bc9c77e38d 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb index c5f6ee7efb..bc9d95c665 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb index 74d50ac9bb..bfb0d1c0d0 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb index e5f69bc700..99e50633bd 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb index e12d98205c..264306db6b 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb index 56b7f26201..d6d1b8f528 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb index 5d4df914d3..8996d38eec 100644 --- a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb index 4243fd37f2..bc9b6720aa 100644 --- a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb index 0f736b3a8c..9a22031ce4 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb index 9d04ab8106..cc5f91e1c0 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb b/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb index e8436794bb..9c61c6e1c5 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb b/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb index 911ddc3eaf..b4f7e33e62 100644 --- a/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb +++ b/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb index 60091a3fe9..f165b44de6 100644 --- a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb index a8c6a7e756..0c3a583030 100644 --- a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb index 24e4efa236..4df9c110ef 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb index bf43692811..913e8f5148 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb index e7bcf8437d..1a54e83bcc 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb index 8ab364e15a..1c6eacb2ec 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb index 4afc6c575c..e490a2c15a 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb index 0586db611f..66d8564ee4 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb index ee98977252..621cddae98 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1-GCC-4.6.4.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1-GCC-4.6.4.eb index 590aab7d67..e179deaff1 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1-GCC-4.6.4.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1-GCC-4.6.4.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb index 135fd9f4b7..a95a33f2f0 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb index d84dd9d949..dc17e691dd 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb index ba87fd596a..6f96497923 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb index 3855246cda..e43a039fde 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb index 0ecf5d3f45..d36f40fe22 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb index 93406cb2aa..6cc1d632ff 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb index cfdb1760fd..f2f4c5846c 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb index cb35b40757..5f98a5f4ea 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb index 287a7c1d2b..d42d132bb8 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb index 04e6dfe312..b01ef6d091 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb index 4fa5a6e2e1..62c52a2fed 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb index c12d39a43e..f6a9ad3d8e 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb index 2fac5aabee..860c5a26ea 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb index d742fcbfa6..9392a2507b 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb index 410cf7e554..b1f3651b26 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb index 465ec2ad76..615c7d4e03 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb index e298537f12..a3411ef6f7 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb index 9ab19f3693..9c107f7acc 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb index 717fc21c8b..e65d2c47bc 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb index c7a3e3e37c..8436ff5ad3 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # Jens Timmerman (Ghent University) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb index 79ace6dbc7..0fe44eff24 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # Jens Timmerman (Ghent University) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb index bc8cca8be6..73f199d0c4 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb index e2a244a191..de9af77c44 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb index 0a98f10dc3..285a2ebef8 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb index 4a7e7ae6d5..b6db1beecf 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb index 59124fc81f..74c5cf5f11 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb index 2fa549427b..fb40a37413 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb index 626c573418..4297280f4a 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb index a6c4166eee..abd99e865b 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb index 431ca87c77..aeeec41c7e 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb index fc097ab4be..73c4487934 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb index 01e152b6e9..6852e4c07b 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb index b15ac13090..92f7502df9 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb index 5c1247c5f6..cce90885bb 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb index 182d829f0f..44c64f9763 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb index 60c28967c6..d48ed9bfb3 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb index ad74f64ba5..93f7bf2ed5 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb index e6b984361d..9b72320f48 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb index a78c94ff9e..5c3a649fe8 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb index dba8bb5006..d0eb2af2d6 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb index 4d636a0740..81f5b4188f 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -# authors: Kenneth Hoste (Ghent University), George Tsouloupas , Fotis Georgatos +# authors: Kenneth Hoste (Ghent University), George Tsouloupas , Fotis Georgatos # # This work implements a part of the HPCBIOS project and is a component of the policy: # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb index 37b0843093..325122ddce 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb @@ -1,4 +1,4 @@ -# authors: Kenneth Hoste (Ghent University), George Tsouloupas , Fotis Georgatos +# authors: Kenneth Hoste (Ghent University), George Tsouloupas , Fotis Georgatos # # This work implements a part of the HPCBIOS project and is a component of the policy: # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb index 5dfacf0215..b28209b1ca 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb @@ -1,4 +1,4 @@ -# authors: Kenneth Hoste (Ghent University), George Tsouloupas , Fotis Georgatos +# authors: Kenneth Hoste (Ghent University), George Tsouloupas , Fotis Georgatos # # This work implements a part of the HPCBIOS project and is a component of the policy: # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb index 59bfbaf8a1..1947b461d6 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Josh Berryman , Fotis Georgatos +# Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb index d0d1158f58..601b35bb66 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Josh Berryman , Fotis Georgatos +# Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb index c7461b015a..67cb182ed1 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Josh Berryman , Fotis Georgatos +# Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb index 1fc6669262..bf71a8137a 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Josh Berryman , Fotis Georgatos +# Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb index 66a5edd323..6f8209d691 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Josh Berryman , Fotis Georgatos +# Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb index 576995bfd5..f04140a61c 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Josh Berryman , Fotis Georgatos +# Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb index bef6847c1d..4f01f75f0c 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Josh Berryman , Fotis Georgatos +# Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb index 2f8b996a52..546fb01660 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Josh Berryman , Fotis Georgatos +# Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb index 2b998a05e2..3d48208d85 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb index 958a558f7d..f395beaf8e 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb index 1b2199f7ad..49957ea598 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb index 3c1a34a84a..6f7e12db33 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb index 5eb47f9b01..524ccdc1f2 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb index 41829c8d56..7a66c9060a 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb index da3a06f00f..a9061534e8 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb index 0d4662d693..854bf7427c 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb index 5a9c5c11ad..cf8bb5361f 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb index fb8adaa95f..49d3ddaefc 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb index 499f8d1c30..fc825ef78e 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb index d06630bb98..869171e32f 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb index 6f89ce5300..54a45f15e8 100644 --- a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb +++ b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb index d0ed8682f9..72ad6cf9a8 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb index f039b4fbab..832a1c2d74 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb index e858fe9af8..4bc58e31b4 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb index 8352cf1a1f..51067e6b75 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb index d529b00f96..ba97e084b2 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb index 0160acc4c4..3a91a449d9 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb index b2d360c185..cbe80ab4bf 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb index e48636a6d2..716b0dcfa7 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb index 4c9f63f9c5..754542fe28 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb index 833388f606..bebc3cb082 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb index c75c22094b..cd35107a88 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb index c3a788ffe2..364b23b9c0 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb index c97f6d7bc4..8d0c30b132 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb index cf1a423426..0e3abd3c7a 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb index 4517ed6267..d11b2ca22d 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb index 3fef179c31..ed611630ea 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb index e54d658dee..ed83f43f9a 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb index bb25a5e621..25186ef942 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb index 7814ec1eba..ce8c1d2533 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb index e2199ba071..859045d313 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb index 316e156781..dbb45c9954 100644 --- a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb index 4226f86422..e7b1cce2f3 100644 --- a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb +++ b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb index 2c32c1c216..8b7ce10b09 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb index 7304cc5789..cda3ba8040 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb index d2a6762f37..1c30162891 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb index caa9471e7c..38e8da7a9f 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb index 6dcbff4c39..c8faf46ef2 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb index 605b8ed69d..d32dc89af6 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb index bbf71787ee..4ba33fc5fc 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb index 72e6d81f6c..60c88b9f39 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb index 45f81add29..1af60c8e06 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb index 6d1ed16eee..0d58217217 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb index afe1fbe21b..48bbf872ec 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb index e9d5d04c88..941faf4311 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb index 73c56d433b..96e80ec502 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb index e5cfaf5826..03650ea931 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb index 0056d45c8c..f4131ad13d 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb index 060e0556d6..4de81fa67c 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb index 1f91b84ea4..6d81f124c6 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb index b04177b611..ffff48393f 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb index adc07319fe..77718469b8 100644 --- a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb index 2f7e0cf882..9ebfb920ea 100644 --- a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb index c692feebea..dd7d796e0c 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb index a3203c2722..00ad78c74f 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb index 25a5fa2c15..5948128295 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb index e314ce9a4a..b8987defb7 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb index cbd803ef09..792a4e8102 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb index 55d01e4601..42d7322e10 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb index 24793d6e14..e16f0db5e5 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb index c7bb3272a8..4df1ff5e19 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb index 649c48235a..58cee45a17 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb index fa7d2b38d2..f8b1f27bc0 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb index 5b98a2e11a..fd230f8c7c 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb index dab2d48e65..fcb9b7902b 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb index a5ff9d8c54..d157d9ea28 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb index 92f7f57121..7eb3ed4777 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb index 702aed1c9a..10b5d30ba7 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb index 077a7022f6..4d6c553773 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb index cfc72f3481..6812f08cfb 100644 --- a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb index ecfd3c028b..5ac8527fd6 100644 --- a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb index b899099213..2af41d2aba 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb index 226546327a..e8f4fb2168 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb index 44eaaef54e..c24459e59e 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb index 045a6f4d07..fb01ffc75f 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb index f61cfa1107..846f8c8104 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Nils Christian , Fotis Georgatos +# Authors:: Nils Christian , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb index 9858a6db3f..a4f9aea0f9 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Nils Christian , Fotis Georgatos +# Authors:: Nils Christian , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb index 15d65a1108..2feb89987e 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Nils Christian , Fotis Georgatos +# Authors:: Nils Christian , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb index 86ef1ed180..f7928257b1 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb index dea29ed2f5..b9b8aeb0de 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb index 3a09a60966..191ffc956d 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb index 8b2a4995ff..766d488701 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb index dc22e82ed1..f9719618e0 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb index dbb7fbafb0..45ad18fd34 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb index 1c2838fe00..924b293384 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb index 26f0af4029..b2761ced70 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb index b9bf688a4d..2d52a24be1 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb index d3db545e1a..4272441c2b 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb index 51e22a99b8..83c3db8502 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb index 49c4ff18a2..2966accd6f 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb index e9de6ee650..7e49f3597d 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb index 022e6a2f1a..593205362c 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb index 8aef81fc70..d28720bd73 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb index cf247c34ea..625af00db3 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb index a446d8661a..26d94ff6a3 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb index 712a33b529..f3bdfc8cbb 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb index 9b41c95294..1e82518842 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb index 6c72f81316..f05dbacdae 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb index 8c69a03373..5f70c2b7bc 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb index d0b990acfb..14117b9cae 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb index 1a0ed065bb..3ea22a8b19 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb index 1c408bae7f..0a7e1f18a9 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb index b7013b9187..41a312860e 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb index e6749bed35..f712a6ba0d 100644 --- a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb index c08a416087..edf7b48493 100644 --- a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb index 7f66ee6725..1658f88d01 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb index 4431992a8c..a36baf944c 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb index 20ea7b2125..d71018b058 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb index 008b9428d8..a8ef6a5099 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb index d6279e4a8d..f955bb75a8 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos +# Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-4.1.13.eb index 54b6e7c9b0..9d54c63138 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-4.1.13.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos +# Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb index 53f400eb0a..4e5e60fb04 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos +# Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb index 4112ecb99d..80850f799f 100644 --- a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb index 9f7a03d367..29d7448a3c 100644 --- a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb index 58ac52b612..e04870be3a 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb index 20e7bbf03d..dfddf2588e 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb index 9708f31292..c44461e783 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb index 3b883bb438..9821d75b12 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb index 802598d83f..5f8bc22e6c 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb index 3a9d4b603a..c368a31dc7 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb index d141360b8c..2f05f36027 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb index 325e2a7b05..cb04d0f0a2 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb index 535f3995e4..7e7d83b19a 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb index 8ad0e5e710..b5253ff606 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb index cc1c5b9528..7cd472454e 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste +# Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb index 3a1c6157f6..735a6dbbde 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb index ee85659115..00794e2b9a 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb index b85beabd73..fd4081a3ca 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste +# Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb index 6148c2da6e..1b626c6b3f 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste +# Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb index e11bf5f61d..872b4b4601 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb index abea058906..d7e3e9a663 100644 --- a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Andreas Panteli , +# Authors:: Fotis Georgatos , Andreas Panteli , # License:: MIT/GPL # ## diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb index 3ab6fccc96..dd0f226028 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb index c9bcb07364..b0f03207b1 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb index c7d1a1094e..441bb4382c 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb index a9129b8002..0c0b208148 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb b/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb index a7f94a67d7..632b0bfe95 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb b/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb index 33ab4efa80..8b47ece0fb 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb index 98d8a738b6..fb66f7d649 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb index 5342b2b0d5..dc116e6756 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb index 23c3c9a7ce..99571ba010 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb index 85e0db7ab2..7c559721a4 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb index e381abf077..c757ea3f04 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb index de8ec9a2e5..2632d70772 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb index 3952679da4..c63336f477 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste +# Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb index e8452f01f1..1577b9b846 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb index 7c2e363954..18c6561f53 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste +# Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb index 97dda48ba0..d9e262c557 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste +# Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb index c3442f5878..4601c41dad 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste +# Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb index dc1dc371e7..0f42b66b82 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb index 73f9331d82..68354f54ad 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb index c3a416b2c0..10b51af550 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb index e0c5b6c702..67951df740 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb index 2bb06941c0..3d02110783 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb index 9bd7390fa4..34f634c99c 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb index b24db086b1..cf1349965e 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb index 1a11b21b38..838ef19efd 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb index 191deb4610..1857e9f00d 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb index 0506de86ee..a202cf508c 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb index 8904b207ca..57a82e005b 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste +# Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb index c4cbea377a..ed4863a46e 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb index ee75b9ffbd..d2fe882989 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos , Kenneth Hoste +# Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb index 4a9c130714..8144d05be8 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb index 2100f6a220..aaa40bf442 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb index c81c77dbef..22c3560354 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb index 6c325f968e..3c0b494a4d 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb index ce145c9209..508e2e178a 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb index 4f8750c4ab..bc720f2ad4 100644 --- a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute -# Authors:: Andreas Panteli , Fotis Georgatos +# Authors:: Andreas Panteli , Fotis Georgatos # License:: MIT/GPL # ## diff --git a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb index 9d0b9b6a0b..6954627e46 100644 --- a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 The Cyprus Institute -# Authors:: Andreas Panteli , Fotis Georgatos +# Authors:: Andreas Panteli , Fotis Georgatos # License:: MIT/GPL # ## diff --git a/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb index 86a0d0c473..4d96ad08b7 100644 --- a/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb index 761c62c1f7..762d3ec2f8 100644 --- a/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB -# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb index d5c57bf57e..750e28227c 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb index d2e670ccbd..de5739db74 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb index 74cebd43c8..b30efb51d6 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb index 1a6f03a8e0..0d3a815494 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb index b4a46c4852..0575ed87e1 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb index 0376287c5e..74237b8224 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/p/PCC/PCC-20131024.eb b/easybuild/easyconfigs/p/PCC/PCC-20131024.eb index 4a0122d6ab..cdf355b530 100644 --- a/easybuild/easyconfigs/p/PCC/PCC-20131024.eb +++ b/easybuild/easyconfigs/p/PCC/PCC-20131024.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb index dedd3bb32d..53644edaa6 100644 --- a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb index a795cc27ab..be6b093951 100644 --- a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb index d19fa1d165..3ef5321de5 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb index ec06e9c7cc..10089317f6 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb index 2a63fe61d3..fa59d52d29 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb index 8de6c29485..cf55766011 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/q/qtop/qtop-53-1.eb b/easybuild/easyconfigs/q/qtop/qtop-53-1.eb index c4d421186a..8797f65ca1 100644 --- a/easybuild/easyconfigs/q/qtop/qtop-53-1.eb +++ b/easybuild/easyconfigs/q/qtop/qtop-53-1.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb index 107caabf86..78bd080452 100644 --- a/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb b/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb index d2cd389f5e..1eee165b77 100644 --- a/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb index 0823f7f050..c416673a99 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb index ad59021972..578d283537 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb index 4aa1022f31..2405e788fc 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb index 61242ed534..e38b4739fe 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb index bc5a01fa6f..54b9c9156f 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb index 733162dbb0..253b4abbf3 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb index af7c33b32d..5e9b9a64d6 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb index 8f24a43f14..de02054735 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb index b01aef25c0..96f8893cd5 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb index ecc2d37e64..381d4d3f26 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb index 3cf6147c02..a7cace1519 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb index 429fdeca0a..d51e410e67 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb b/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb index e7a3bbe47a..02d7187c16 100644 --- a/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb +++ b/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb index 1a926e770a..d13fafc219 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb index 66c65749d0..5d2cae6f30 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb index 737c3233c4..77f72d36f5 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb index 201576a5b4..e9692069cd 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb index 0383c6ec88..76faf149cb 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb index 05f97c62b3..cc747ce025 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb index 97f7c6bd76..29b3ae9660 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb index 2d87802022..a66ab255f8 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb index 4a41701d6a..65b160523d 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb index b67b65616a..c9d952fd49 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb index 3e5a453e42..b6dfaaa119 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb index 911acb7f10..ffbccc0a97 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb index 1c4d3c3cc5..b625118ec8 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb b/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb index febaa53129..7a05be46c7 100644 --- a/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb +++ b/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb b/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb index 0704526b69..25e6503193 100644 --- a/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb +++ b/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb index c3ec26cfd7..e63026e80e 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos , Jens Timmerman +# Authors:: Cedric Laczny , Fotis Georgatos , Jens Timmerman # License:: GPL # $Id$ # diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb index 4f34360b38..ba170088d8 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb index 5e05559ca4..5bae5dd713 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb index 38bd6b026c..6d42dcd559 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb index d63b8198e4..c7133753ae 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb index c9bd4d2884..0f367bfc51 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb index 4f19014151..e0eaecf1b5 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos , Jens Timmerman +# Authors:: Cedric Laczny , Fotis Georgatos , Jens Timmerman # License:: GPL # $Id$ # diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb index 3a01987048..b42d3bc774 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb index f619dfb467..1a5ff67b40 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb index 7147f39c0e..657b1bce1d 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb index c958dca9e7..751f83dd15 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University -# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb index 2c720a8286..1332ad036a 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University -# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb index 2d57c2a7a9..487f4a29f0 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University -# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb index 43bd2209ab..bc93ab89ba 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University -# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb index de58c80ab6..d541df72c5 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University -# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb index 8da23e587b..32cc46185a 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University -# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb index fac7aa6022..43bf26871b 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University -# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb index 58250c2913..3f7cad9407 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University -# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb index 19076de433..a9ba115c75 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb index 8fe49188c5..7319229b63 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb index cb0f7a0aa8..e3e77b34ec 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb index d1417b85db..45f08520e6 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb index 8072b5e529..9d2deb8afe 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb index 559cf010ad..066deb2886 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb index 8e7a30e271..835cdb2985 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb index b602d60cb7..242e066de0 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb index f96b95d496..d06d170fb2 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb index aa00323081..daf99def18 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb index f08ac6a53c..83bd5769ea 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb index 38613ea925..6a7eb5ad47 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb index 3abd656e69..7d5acadcf9 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb index 8f5bbc5897..c14a1322bd 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 LCSB, Ghent University -# Authors:: Fotis Georgatos , Ward Poelmans +# Authors:: Fotis Georgatos , Ward Poelmans # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb index 2cbe926968..dae4b441ce 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb index c7b957c4d8..7ed987a7ea 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb index c41656cb60..1aaa53b71f 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb index 02c81b3e4a..25b1acec77 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb index 9b377be075..73f18897cc 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb index d193e3e7e7..f76b49e26d 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb index 3eaaba34d2..2c89c1d54c 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb index 50641b1a90..693ac9c163 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb index f0df356467..1145d773f7 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb index b25ab437cd..628902b6ff 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb index de4c012ec4..0b232f9504 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb index 3e35384c19..3e952150bc 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb index d1612dd40a..a435597519 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb index 66b75e20b2..07e98a42ea 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb index afeb549913..1afc95580a 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb index b37e073721..f0d7291f8f 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb index a712549a40..ce02b336ae 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb index ee14f37369..63910d730b 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb index 1db15e90ab..00409f657e 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb index 9c0f9ff2c0..a752e1fd6f 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # -- GitLab From 102bd98c4484b60ea61940fdbc5ea946951facf9 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 9 Dec 2014 19:44:41 +0100 Subject: [PATCH 0163/1217] Uni.Lu/LCSB, NTUA Signed-off-by: Fotis Georgatos --- .../easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb | 2 +- .../easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb | 2 +- .../easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb | 2 +- .../a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb | 2 +- .../a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb | 2 +- .../easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb | 2 +- .../easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb | 2 +- .../a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb | 2 +- easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb | 2 +- .../easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb | 2 +- .../easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb | 2 +- easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb | 2 +- .../easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb | 2 +- easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb | 2 +- easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb | 2 +- easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb | 2 +- .../easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb | 2 +- .../easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb | 2 +- .../easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb | 2 +- .../b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb | 2 +- easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb | 2 +- .../b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb | 2 +- easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb | 2 +- .../b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb | 2 +- .../easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb | 2 +- .../easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb | 2 +- .../easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb | 2 +- .../easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb | 2 +- .../easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb | 2 +- .../b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb | 2 +- .../easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb | 2 +- .../b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb | 2 +- easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb | 2 +- .../easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb | 2 +- easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb | 2 +- .../easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb | 2 +- easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1-GCC-4.6.4.eb | 2 +- easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb | 2 +- easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb | 2 +- easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb | 2 +- easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb | 2 +- .../easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb | 2 +- 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easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb | 2 +- .../t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb | 2 +- easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb | 2 +- .../easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb | 2 +- .../t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb | 2 +- easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb | 2 +- .../t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb | 2 +- easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb | 2 +- .../easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb | 2 +- .../easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb | 2 +- .../easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb | 2 +- easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb | 2 +- .../easyconfigs/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb | 2 +- .../easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb | 2 +- .../easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb | 2 +- .../easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb | 2 +- easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb | 2 +- .../easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb | 2 +- .../easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb | 2 +- .../v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb | 2 +- .../easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb | 2 +- .../v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb | 2 +- .../easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb | 2 +- .../easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb | 2 +- .../easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb | 2 +- .../easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb | 2 +- .../wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb | 2 +- .../wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb | 2 +- .../w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb | 2 +- .../y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb | 2 +- .../y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb | 2 +- .../y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb | 2 +- easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb | 2 +- .../easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb | 2 +- 385 files changed, 385 insertions(+), 385 deletions(-) diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb index 536139d9d4..1dd0ee44d5 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb index da282b6c20..fd2f8eb23c 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb index 49c2d80186..d9e1e93773 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 0e22981c6b..2718d59b16 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb index 013240a0e9..873477b042 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb index c3eecb2d44..70003ee6e1 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb index 30c0dccb25..31e025847b 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb index 04503f66f2..46fdf72c06 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb index 0a3cc12b10..01f8002685 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb index be3fe7e4e9..b95c1db50b 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb index ea837ed663..1e388dba7a 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb index 75e6529a95..ae23c2a99f 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb index ce9de3b69a..0d06197fe5 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb index d52e7d9d65..e1bb111ede 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb index a837fc40fb..6b0a0e0679 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb index a86350896c..02edcf57c6 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb index 85f6f63617..bce406495c 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb index 3f357ee837..0a953c18cd 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb index 9f95152a94..97a1ce6d4a 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb index ad55165823..0c2032486d 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb index b4c672d2a0..dc1ce6deeb 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb index 43ba4d46d7..b692173623 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb index 95665717bb..18e62dd1b5 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb index 05bbe83af2..0b1e330fd9 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb index 989331cc66..de53d7d2a6 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb index e10aa0963c..52bd029f27 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb index 638cf2d850..2ed018e397 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb index b0ad7bf9e4..2d8dea26e2 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb index 1efd2623b8..743b78f67b 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb index b96067f296..a848ff1fcb 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb index 9b4b3f3a22..574d499bb8 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb index d9082a80ca..93e9a8d1a8 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb index d16fb1017b..0eef7ca6c2 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb index 8544accef6..ba06354374 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb index 11faff0a14..83278f28c6 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb index 893fe9f80d..eac0a6e5e0 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb index 0dae0006bb..5811a2aee8 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb index 83b55084d5..6aa3d9ca48 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb index fa21f6b50a..447d0c2ac8 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb index 9be8a1e58c..d9d4d79e1e 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb index f70399e48b..4ea5aa34d6 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb index 65ec834a01..2c25a6ae42 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb index 1036a9b226..3980963fed 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb index 2a0a32b51c..48de93dee3 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb index c08fecd9c1..95c7eceb3e 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb index 426e2badd7..482527bb0b 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb index 3914d163b9..d3a9f72577 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb index 57f7ce2b06..ce4a8c45b5 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb index 9dfdb88dc4..dc9f61fdc4 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb index bc25ea916c..d6227bb001 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb index 9ff5742d8b..89adbf1c9f 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb index bc9c77e38d..37caebe097 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb index bc9d95c665..ff508174c5 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb index bfb0d1c0d0..11d2b5b55f 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb index 99e50633bd..33d373fd37 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb index 264306db6b..5399d9143e 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb index d6d1b8f528..1f396fac0c 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb index 8996d38eec..62b1c4d8d2 100644 --- a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb index bc9b6720aa..8177eecb1f 100644 --- a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb index 9a22031ce4..62c5311d8c 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb index cc5f91e1c0..3b4c9dfe81 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb b/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb index 9c61c6e1c5..de34fc1041 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb b/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb index b4f7e33e62..8038f9ee8b 100644 --- a/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb +++ b/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb index f165b44de6..8efd0fec6e 100644 --- a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb index 0c3a583030..232e2478a4 100644 --- a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb index 4df9c110ef..f34eb1b175 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb index 913e8f5148..7a6d9e1d74 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb index 1a54e83bcc..daf1672adb 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb index 1c6eacb2ec..8d5b22dee8 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb index e490a2c15a..0c795b25ba 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb index 66d8564ee4..d456656b00 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb index 621cddae98..b1c2d5fa88 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1-GCC-4.6.4.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1-GCC-4.6.4.eb index e179deaff1..78c6de9dcf 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1-GCC-4.6.4.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1-GCC-4.6.4.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb index a95a33f2f0..7ba3b50c07 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb index dc17e691dd..875f7bc43f 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb index 6f96497923..a9f70101f0 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb index e43a039fde..997d933e6a 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb index d36f40fe22..ded9e7552b 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb index 6cc1d632ff..c520dc2820 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb index f2f4c5846c..68843b7afd 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb index 5f98a5f4ea..11088f0d44 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb index d42d132bb8..bfb5edd7f9 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb index b01ef6d091..8c6057ffed 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb index 62c52a2fed..5efc1738d6 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb index f6a9ad3d8e..b4dbfc7f1c 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb index 860c5a26ea..dd1c7c1181 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb index 9392a2507b..192db228d2 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb index b1f3651b26..915a912fc5 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb index 615c7d4e03..cbc84fbad1 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb index a3411ef6f7..923870f927 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb index 9c107f7acc..cb2210697a 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb index e65d2c47bc..994b6d933a 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb index 8436ff5ad3..50ae8ddd43 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # Jens Timmerman (Ghent University) # License:: MIT/GPL diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb index 0fe44eff24..2b800c39ff 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # Jens Timmerman (Ghent University) # License:: MIT/GPL diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb index 73f199d0c4..19dbde2f75 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb index de9af77c44..024100159a 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb index 285a2ebef8..39d60ced07 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb index b6db1beecf..43e90c37e1 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb index 74c5cf5f11..96d2c1a2c4 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb index fb40a37413..193f36f387 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb index 4297280f4a..2357cafcf6 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb index abd99e865b..948524fff2 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb index aeeec41c7e..77ed180f63 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb index 73c4487934..8e2ac5c2d3 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb index 6852e4c07b..0b886c4e17 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb index 92f7502df9..8651c0efb8 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb index cce90885bb..484845deb3 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb index 44c64f9763..37449dac0f 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb index d48ed9bfb3..a73809319b 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb index 93f7bf2ed5..b95d5d0f1d 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb index 9b72320f48..bcd59719ee 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb index 5c3a649fe8..f2118fb998 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb index d0eb2af2d6..04edaafd13 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb index 1947b461d6..e5d61f3484 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb index 601b35bb66..f7a9b92bc2 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb index 67cb182ed1..8463c204a1 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb index bf71a8137a..59e404358e 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb index 6f8209d691..a646487b58 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb index f04140a61c..3b1b5add74 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb index 4f01f75f0c..03932194a3 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb index 546fb01660..450e2a31fe 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb index 3d48208d85..9511055dc4 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb index f395beaf8e..2d836dcf95 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb index 49957ea598..531b3e1f43 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb index 6f7e12db33..75c68fea08 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb index 524ccdc1f2..5b6a42ecc8 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb index 7a66c9060a..057da789c0 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb index a9061534e8..21f3594a21 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb index 854bf7427c..0e37aca531 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb index cf8bb5361f..e5798b85ce 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb index 49d3ddaefc..d59ac0aade 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb index fc825ef78e..8364794482 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb index 869171e32f..cfb726b5f3 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb index 54a45f15e8..549feb8df9 100644 --- a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb +++ b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb index 72ad6cf9a8..3ebf52b12c 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb index 832a1c2d74..ea47eff8af 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb index 4bc58e31b4..8f20dc9240 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb index 51067e6b75..3fe9269072 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb index ba97e084b2..a42fe0f0ed 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb index 3a91a449d9..c85282b389 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb index cbe80ab4bf..06a6ffee44 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb index 716b0dcfa7..3f81c6e5b7 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb index 754542fe28..1fe5d038e3 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb index bebc3cb082..617096d510 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb index cd35107a88..c7b36912ba 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb index 364b23b9c0..e8ba99fb6b 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb index 8d0c30b132..281cfa367f 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb index 0e3abd3c7a..94387ac071 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb index d11b2ca22d..367f232710 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb index ed611630ea..bd7aeb2d8c 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb index ed83f43f9a..0f65fd8cd7 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb index 25186ef942..1e540aad8c 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb index ce8c1d2533..2be5782ded 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb index 859045d313..bee48ced7c 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb index dbb45c9954..5b8a247add 100644 --- a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb index e7b1cce2f3..fd63b97091 100644 --- a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb +++ b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb index 8b7ce10b09..8e10d99364 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb index cda3ba8040..f64fcfe9c6 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb index 1c30162891..c4cd05fea3 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb index 38e8da7a9f..88750574b4 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb index c8faf46ef2..570a75e186 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb index d32dc89af6..f1f7955273 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb index 4ba33fc5fc..71b0186817 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb index 60c88b9f39..e54f5ade9e 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb index 1af60c8e06..369e4050a2 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb index 0d58217217..501b84712e 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb index 48bbf872ec..d3e7a37e99 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb index 941faf4311..c2e1c23194 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb index 96e80ec502..e7187193ab 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb index 03650ea931..1dc50ab284 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb index f4131ad13d..1969c11a41 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb index 4de81fa67c..2b328fcb5c 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb index 6d81f124c6..29ad5ed381 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb index ffff48393f..89275bcc60 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb index 77718469b8..8cadfaf01c 100644 --- a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb index 9ebfb920ea..55c42a3a2a 100644 --- a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb index dd7d796e0c..91fe6f6ad0 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb index 00ad78c74f..6a70b4a91b 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb index 5948128295..10ec978325 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb index b8987defb7..40d198ac56 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb index 792a4e8102..462e4de80d 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb index 42d7322e10..dc07cf8e73 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb index e16f0db5e5..f31e876fb3 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb index 4df1ff5e19..2255756660 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb index 58cee45a17..e9eb65c222 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb index f8b1f27bc0..77477064a3 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb index fd230f8c7c..de40ee3f67 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb index fcb9b7902b..180413f69a 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb index d157d9ea28..c0b40996ef 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb index 7eb3ed4777..328e885523 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb index 10b5d30ba7..eb9a1d735f 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb index 4d6c553773..612f9c2722 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb index 6812f08cfb..01d3cb3903 100644 --- a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb index 5ac8527fd6..317da17216 100644 --- a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb index 2af41d2aba..06338adc4a 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb index e8f4fb2168..231e47677d 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb index c24459e59e..969e305f7a 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb index fb01ffc75f..1c62cf8c79 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb index 846f8c8104..a279ca9cfe 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb index a4f9aea0f9..3d55fa8b37 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb index 2feb89987e..0fc601c08f 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb index f7928257b1..da5fc1fe35 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb index b9b8aeb0de..ca646fc803 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb index 191ffc956d..d33d2f609d 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb index 766d488701..eda9b5471d 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb index f9719618e0..c5afb55411 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb index 45ad18fd34..168757fc99 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb index 924b293384..1752b454c0 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb index b2761ced70..6deb782dfa 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb index 2d52a24be1..e006ea7e7c 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb index 4272441c2b..56495202df 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb index 83c3db8502..47dc079117 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb index 2966accd6f..a74a373b02 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb index 7e49f3597d..942efe165b 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb index 593205362c..069a1da262 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb index d28720bd73..6270035f8e 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb index 625af00db3..0a2de65b68 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb index 26d94ff6a3..99ece8b2ee 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb index f3bdfc8cbb..852f1d5690 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb index 1e82518842..545c4e897f 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb index f05dbacdae..6fa7712f02 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb index 5f70c2b7bc..beeb21991f 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb index 14117b9cae..6545aea928 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb index 3ea22a8b19..79b6bd5c14 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb index 0a7e1f18a9..a3cfcfe427 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb index 41a312860e..ac3194591a 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb index f712a6ba0d..9e1a3c9335 100644 --- a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb index edf7b48493..0922fa2f54 100644 --- a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb index 1658f88d01..650b72b2d1 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb index a36baf944c..c762f6b172 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb index d71018b058..d282a01625 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb index a8ef6a5099..8742b33096 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb index f955bb75a8..06cf847f45 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-4.1.13.eb index 9d54c63138..5db14f4933 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-4.1.13.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb index 4e5e60fb04..b99e09337b 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb index 80850f799f..3353899f80 100644 --- a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb index 29d7448a3c..d94b26172f 100644 --- a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb index 4100089cd7..b6a4e90b55 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb index a95559c5e3..5f7e332510 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb index 46539edaa0..d4ab7d3d1a 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb index e04870be3a..42e5627cba 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb index dfddf2588e..03705cbf66 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb index c44461e783..af0813626f 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb index 9821d75b12..b9e19c5be0 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb index 5f8bc22e6c..53fdf4afe8 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb index c368a31dc7..02008ee14f 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb index 2f05f36027..3464b93ba6 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb index cb04d0f0a2..e1b69331f7 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb index 7e7d83b19a..63af63ab50 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb index b5253ff606..8f88486cd2 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb index 7cd472454e..8c09077972 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb index 735a6dbbde..b82229232b 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb index 00794e2b9a..759d160ad2 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb index fd4081a3ca..742ec13df2 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb index 1b626c6b3f..44a5f81535 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb index 872b4b4601..717ee44342 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb index d7e3e9a663..2679aed386 100644 --- a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Andreas Panteli , # License:: MIT/GPL # diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb index dd0f226028..8eacf40614 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb index b0f03207b1..47688cb32f 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb index 441bb4382c..1254610dec 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb index 0c0b208148..3c40c02f6c 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb b/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb index 632b0bfe95..80fed94f3a 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb b/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb index 8b47ece0fb..844292c533 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb index fb66f7d649..17a800a1bc 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb index dc116e6756..c6adaea9eb 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb index 99571ba010..83d3c1bfae 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb index 7c559721a4..3a96dbd533 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb index c757ea3f04..3b8797d5bb 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb index 2632d70772..cfe158383c 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb index c63336f477..fa9565eb9f 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb index 1577b9b846..5b6a1de08a 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb index 18c6561f53..89a919ed7c 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb index d9e262c557..f598293a1a 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb index 4601c41dad..b9f9b7edf6 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb index 0f42b66b82..1c8a8decf7 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb index 68354f54ad..25a50552d0 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb index 10b51af550..b251c5f840 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb index 67951df740..06d09df896 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb index 3d02110783..77469f2708 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb index 34f634c99c..b3aa2997ff 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb index cf1349965e..8cfd7f68ed 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb index 838ef19efd..f1096b7261 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb index 1857e9f00d..e855c4c0d0 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb index a202cf508c..386b34772e 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb index 57a82e005b..f63b096d4f 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb index ed4863a46e..6bf85ad43d 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb index d2fe882989..09df2a0c35 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb index 8144d05be8..0ba7777227 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb index aaa40bf442..f0b17f7472 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb index 22c3560354..584d868204 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb index 3c0b494a4d..0b64a8f44b 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb index 508e2e178a..6064695138 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb index 4d96ad08b7..92393ad75a 100644 --- a/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb index 762d3ec2f8..1e6b7d39f1 100644 --- a/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb index 750e28227c..fba7ab9812 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb index de5739db74..5a2f8faaa5 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb index b30efb51d6..1cbbb1bdb5 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb index 0d3a815494..b990a6bb7f 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb index 0575ed87e1..fe6f9c183c 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb index 74237b8224..3c83eded1e 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PCC/PCC-20131024.eb b/easybuild/easyconfigs/p/PCC/PCC-20131024.eb index cdf355b530..c9d9fe4964 100644 --- a/easybuild/easyconfigs/p/PCC/PCC-20131024.eb +++ b/easybuild/easyconfigs/p/PCC/PCC-20131024.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb index 53644edaa6..e1cb7c9686 100644 --- a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb index be6b093951..b4369457a0 100644 --- a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb index 3ef5321de5..d33c8e327e 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb index 10089317f6..8cd99a9435 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb index fa59d52d29..b75ffa08d6 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb index cf55766011..10ff3bf7be 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/q/qtop/qtop-53-1.eb b/easybuild/easyconfigs/q/qtop/qtop-53-1.eb index 8797f65ca1..dd688814ab 100644 --- a/easybuild/easyconfigs/q/qtop/qtop-53-1.eb +++ b/easybuild/easyconfigs/q/qtop/qtop-53-1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb index 78bd080452..9ad1de6333 100644 --- a/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb b/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb index 1eee165b77..443ee4c16e 100644 --- a/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb index c416673a99..e3da316e3b 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb index 578d283537..3b3d73959f 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb index 2405e788fc..a2ead09a77 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb index e38b4739fe..4d7feb6681 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb index 54b9c9156f..6caf016d9e 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb index 253b4abbf3..4ce9cd7f33 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb index 5e9b9a64d6..268907eca0 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb index de02054735..2c7a3f540e 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb index 96f8893cd5..a82e11a8b8 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb index 381d4d3f26..7e853c6516 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb index a7cace1519..870b03a7cd 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb index d51e410e67..71cb4b1412 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb b/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb index 02d7187c16..fd364fc60a 100644 --- a/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb +++ b/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb index d13fafc219..735d2697a7 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb index 5d2cae6f30..758eb5c57e 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb index 77f72d36f5..23f6fa6d1b 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb index e9692069cd..cf780cf1c4 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb index 76faf149cb..68b067f13d 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb index cc747ce025..ae7872b487 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb index 29b3ae9660..a46ccc6c4e 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb index a66ab255f8..fc426dabb6 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb index 65b160523d..ef0f8103f6 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb index c9d952fd49..1569034a3f 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb index b6dfaaa119..ac09c643b2 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb index ffbccc0a97..a1901c9006 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb index b625118ec8..96d1900fa0 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb b/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb index 7a05be46c7..e38af27edd 100644 --- a/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb +++ b/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb b/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb index 25e6503193..39b9f1d5b9 100644 --- a/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb +++ b/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb index e63026e80e..70b655da91 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Jens Timmerman # License:: GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb index ba170088d8..669e16179b 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb index 5bae5dd713..1f3263865a 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb index 6d42dcd559..f213aa7b1c 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb index c7133753ae..ad363f6853 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb index 0f367bfc51..b18b85015f 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb index e0eaecf1b5..38f354ae34 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Jens Timmerman # License:: GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb index b42d3bc774..c9b82df09d 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb index 1a5ff67b40..7e3bccdd7f 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb index 657b1bce1d..472802866d 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb index a9ba115c75..3131b88386 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb index 7319229b63..9189136131 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb index e3e77b34ec..1d11638e90 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb index 45f08520e6..3533a1c965 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb index 9d2deb8afe..c00899e4ad 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb index 066deb2886..9af486d44e 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb index 835cdb2985..c41328c872 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb index 242e066de0..7f7bc552d5 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb index d06d170fb2..773850a3dd 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb index daf99def18..0904d7213b 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb index 83bd5769ea..0fc7828f50 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb index 6a7eb5ad47..9607f1b9c0 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb index 7d5acadcf9..f041fceb9f 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb index dae4b441ce..50813c780f 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb index 7ed987a7ea..a0a0a8b09e 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb index 1aaa53b71f..8120131a7f 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb index 25b1acec77..1843c0777f 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb index d058f4f6fc..c54c28eeaa 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Thekla Loizou , Andreas Panteli # License:: MIT/GPL # diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb index 73f18897cc..323617fa3a 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb index f76b49e26d..ef0be70d23 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb index 2c89c1d54c..04e4629bf3 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb index 693ac9c163..f2fb38047c 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb index 1145d773f7..408284e21e 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 628902b6ff..1cd8b28959 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb index 0b232f9504..a2334e3825 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb index 3e952150bc..8b01b4d207 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb index 77b78aefc7..956d7cf905 100644 --- a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2013 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb index ded10ac40c..9b65dc31cf 100644 --- a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2013 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb index 30d441b40a..8763d9f965 100644 --- a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2013 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb index a435597519..6987cd593e 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb index 07e98a42ea..bac052c7ea 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb index 1afc95580a..d8cfca0953 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb index f0d7291f8f..713d3dcd62 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb index ce02b336ae..c85cf56c98 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb index 63910d730b..ed6f7d0a2e 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb index 00409f657e..671e5cf84d 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb index a752e1fd6f..80e78b0002 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ -- GitLab From 4f7e757ab387c1cb007fe9f83a481a40b190c0e5 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 9 Dec 2014 19:57:58 +0100 Subject: [PATCH 0164/1217] 2012-2014 Signed-off-by: Fotis Georgatos --- .../easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb | 2 +- .../easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb | 2 +- .../easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb | 2 +- .../a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb | 2 +- .../a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb | 2 +- .../easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb | 2 +- .../easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb | 2 +- .../a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb | 2 +- easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb | 2 +- .../easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb | 2 +- .../easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb | 2 +- easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb | 2 +- .../easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb | 2 +- easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb | 2 +- easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb | 2 +- easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb | 2 +- .../easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb | 2 +- .../easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb | 2 +- .../easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb | 2 +- .../b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb | 2 +- easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb | 2 +- .../b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb | 2 +- easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb | 2 +- .../b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb | 2 +- .../easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb | 2 +- .../easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb | 2 +- .../easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb | 2 +- .../easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb | 2 +- .../easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb | 2 +- .../b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb | 2 +- .../easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb | 2 +- .../b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb | 2 +- easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb | 2 +- .../easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb | 2 +- easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb | 2 +- .../easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb | 2 +- easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1-GCC-4.6.4.eb | 2 +- easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb | 2 +- easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb | 2 +- easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb | 2 +- easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb | 2 +- .../easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb | 2 +- .../c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb | 2 +- .../c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb | 2 +- .../c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb | 2 +- .../easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb | 2 +- .../easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb | 2 +- .../easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb | 2 +- .../easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb | 2 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easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb | 2 +- easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb | 2 +- easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb | 2 +- easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb | 2 +- easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb | 2 +- easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb | 2 +- .../n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb | 2 +- .../n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb | 2 +- .../n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb | 2 +- easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/p/PCC/PCC-20131024.eb | 2 +- easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb | 2 +- .../p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb | 2 +- .../easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb | 2 +- .../easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb | 2 +- .../easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/q/qtop/qtop-53-1.eb | 2 +- easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb | 2 +- .../s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb | 2 +- .../easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb | 2 +- .../easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb | 2 +- easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb | 2 +- easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb | 2 +- .../s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb | 2 +- .../easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb | 2 +- .../easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb | 2 +- .../easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb | 2 +- easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb | 2 +- .../t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb | 2 +- easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb | 2 +- .../easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb | 2 +- .../t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb | 2 +- easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb | 2 +- .../t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb | 2 +- easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb | 2 +- .../easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb | 2 +- .../easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb | 2 +- .../easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb | 2 +- easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb | 2 +- .../easyconfigs/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb | 2 +- .../easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb | 2 +- .../easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb | 2 +- .../easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb | 2 +- easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb | 2 +- .../easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb | 2 +- .../easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb | 2 +- .../v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb | 2 +- .../easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb | 2 +- .../v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb | 2 +- .../easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb | 2 +- .../easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb | 2 +- .../easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb | 2 +- .../easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb | 2 +- .../wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb | 2 +- .../wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb | 2 +- .../w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb | 2 +- easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb | 2 +- .../easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb | 2 +- 382 files changed, 382 insertions(+), 382 deletions(-) diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb index 1dd0ee44d5..a0768a4fb3 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb index fd2f8eb23c..0e53b02003 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb index d9e1e93773..7722a1277b 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 2718d59b16..65a3a11a7f 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb index 873477b042..8fde0c7515 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb index 70003ee6e1..c0037b80f0 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb index 31e025847b..9c73ec2746 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb index 46fdf72c06..fa5a164db6 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb index 01f8002685..12b4935563 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb index b95c1db50b..83680addb9 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb index 1e388dba7a..837a417508 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb index ae23c2a99f..c041420948 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb index 0d06197fe5..3728b1448b 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb index e1bb111ede..16266b5e8c 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb index 6b0a0e0679..f52ca8892d 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb index 02edcf57c6..f4d6f1b95e 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb index bce406495c..81e141a7ff 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb index 0a953c18cd..158caec498 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb index 97a1ce6d4a..bb0de01b16 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb index 0c2032486d..b52689546f 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb index dc1ce6deeb..ba6fb9fd5d 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb index b692173623..419c3d406b 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb index 18e62dd1b5..bcdee98674 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb index 0b1e330fd9..80aabef50d 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb index de53d7d2a6..d68e916857 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb index 52bd029f27..a200957f55 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb index 2ed018e397..ff2f43b0be 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb index 2d8dea26e2..fd211d17de 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb index 743b78f67b..0cd9c5da7f 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb index a848ff1fcb..6ce2b61689 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb index 574d499bb8..4a4b228f89 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb index 93e9a8d1a8..be3256242f 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb index 0eef7ca6c2..2380ce062b 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb index ba06354374..ec46a2d2c1 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb index 83278f28c6..7855f085b3 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb index eac0a6e5e0..457595c972 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb index 5811a2aee8..d34beb73c9 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb index 6aa3d9ca48..c67a21575a 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb index 447d0c2ac8..2549de3e8f 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb index d9d4d79e1e..2cdb466320 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb index 4ea5aa34d6..5bb0458964 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb index 2c25a6ae42..88e63bb1ae 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb index 3980963fed..9ff15e2434 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb index 48de93dee3..bd449ad58f 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.6.2-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb index 95c7eceb3e..6c6c1aff71 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb index 482527bb0b..000b5950bd 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-4.1.13.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb index d3a9f72577..66de8f1a86 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.4-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb index ce4a8c45b5..860efca9e4 100644 --- a/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.5a-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb index dc9f61fdc4..aa7a118558 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb index d6227bb001..6857999302 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb index 89adbf1c9f..28844c4cf5 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb index 37caebe097..0fbabef74c 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb index ff508174c5..89e89457fa 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb index 11d2b5b55f..e98e0de64e 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb index 33d373fd37..ffd1114704 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb index 5399d9143e..f08ff35329 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb index 1f396fac0c..975220fa34 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb index 62b1c4d8d2..c86e6e0a3b 100644 --- a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb index 8177eecb1f..4398ec5150 100644 --- a/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/bam2fastq/bam2fastq-1.1.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb index 62c5311d8c..7052b846b6 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb index 3b4c9dfe81..692786b8d5 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb b/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb index de34fc1041..e6bae6df17 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb b/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb index 8038f9ee8b..81abdbbdb7 100644 --- a/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb +++ b/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb index 8efd0fec6e..5d9f6f1163 100644 --- a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb index 232e2478a4..853e10b626 100644 --- a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb index f34eb1b175..b8f55dde81 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb index 7a6d9e1d74..761b9d3999 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb index daf1672adb..73b0a393f0 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb index 8d5b22dee8..0a0256d97d 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb index 0c795b25ba..d8d026cace 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb index d456656b00..878f45a16d 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb index b1c2d5fa88..63eda1f427 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1-GCC-4.6.4.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1-GCC-4.6.4.eb index 78c6de9dcf..b7d1981966 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1-GCC-4.6.4.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1-GCC-4.6.4.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb index 7ba3b50c07..4c8b4e861d 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb index 875f7bc43f..437ebc2ce7 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.7.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb index a9f70101f0..63bd33a5ba 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb index 997d933e6a..c2fec1c504 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.5.22.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA, Ghent University # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb index ded9e7552b..756b9a3734 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb index c520dc2820..90b46cc4ba 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.6.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb index 68843b7afd..699c2e4b6b 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.7.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb index 11088f0d44..e0029e4424 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb index bfb5edd7f9..345b844881 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.8.0-goolf-1.6.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb index 8c6057ffed..fae5d50567 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb index 5efc1738d6..4c9844ec1e 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb index b4dbfc7f1c..c594cb1b4d 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb index dd1c7c1181..38db616f9c 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb index 192db228d2..0ac070befc 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb index 915a912fc5..7f7cc6e6ce 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb index cbc84fbad1..e83b3411cd 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb index 923870f927..54e29f6336 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb index cb2210697a..c4150404a1 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb index 994b6d933a..06cfa2e156 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb index 50ae8ddd43..ac643427a0 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # Jens Timmerman (Ghent University) # License:: MIT/GPL diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb index 2b800c39ff..a9921b88b4 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # Jens Timmerman (Ghent University) # License:: MIT/GPL diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb index 19dbde2f75..1226b6dc85 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb index 024100159a..916549091d 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb index 39d60ced07..33ddbf32f9 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb index 43e90c37e1..201e850c29 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb index 96d2c1a2c4..7c1f5bd4e4 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb index 193f36f387..55b343284e 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb index 2357cafcf6..358ff1663d 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb index 948524fff2..82843f959b 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb index 77ed180f63..9da76bda63 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb index 8e2ac5c2d3..dbaf94990d 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb index 0b886c4e17..94c1e73484 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb index 8651c0efb8..3cabb8ebfb 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb index 484845deb3..10e4ce1725 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb index 37449dac0f..74b8d31778 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb index a73809319b..2934a37028 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb index b95d5d0f1d..84e02765e3 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb index bcd59719ee..3e05a2a056 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb index f2118fb998..00c03edcad 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb index 04edaafd13..9f0dccf385 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb index e5d61f3484..dac20cc956 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb index f7a9b92bc2..fbac405214 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb index 8463c204a1..39f5667ba5 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb index 59e404358e..79d7c26962 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb index a646487b58..0d5009ded4 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb index 3b1b5add74..638f30315a 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb index 03932194a3..890278722c 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb index 450e2a31fe..dd73e5835e 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Josh Berryman , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb index 9511055dc4..57fad2e4e7 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb index 2d836dcf95..04a48d1f60 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb index 531b3e1f43..34c32694d7 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb index 75c68fea08..eda95916d0 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb index 5b6a42ecc8..ab4f378feb 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goalf-1.5.12-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb index 057da789c0..92042e0a82 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb index 21f3594a21..5e8553cde7 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-4.1.13.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb index 0e37aca531..bf81409418 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb index e5798b85ce..934d581d37 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.1.4-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb index d59ac0aade..890a8a4839 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.0-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb index 8364794482..bca769f27d 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-ictce-7.1.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb index cfb726b5f3..ab03a385a5 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-intel-2014b.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb index 549feb8df9..f66616f2a8 100644 --- a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb +++ b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb index 3ebf52b12c..a08695b156 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb index ea47eff8af..76e03ebe40 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb index 8f20dc9240..2d17f5ad0f 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb index 3fe9269072..7574e30596 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb index a42fe0f0ed..8b8c518961 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb index c85282b389..1bd240ab55 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb index 06a6ffee44..86701eecee 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb index 3f81c6e5b7..bcd48f3bbb 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb index 1fe5d038e3..1ed4d3aa4e 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb index 617096d510..58d09440e1 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb index c7b36912ba..c168f440ff 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb index e8ba99fb6b..b7ad656304 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb index 281cfa367f..cb436b3c96 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb index 94387ac071..f1bd1f3ddc 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb index 367f232710..1df9f9cfc1 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb index bd7aeb2d8c..3b0533cbbd 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb index 0f65fd8cd7..deb82cad20 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb index 1e540aad8c..d2df4d53a8 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb index 2be5782ded..d61b95771d 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb index bee48ced7c..7adfdc3e9c 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb index 5b8a247add..b6ac9d8f9f 100644 --- a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb index fd63b97091..55fa61353f 100644 --- a/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb +++ b/easybuild/easyconfigs/g/GIMPS/GIMPS-p95v279.linux64.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb index 8e10d99364..c9e0665853 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb index f64fcfe9c6..512b6f6e0b 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb index c4cd05fea3..1213defdde 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb index 88750574b4..ba47f06f99 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb index 570a75e186..0c7271116a 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb index f1f7955273..b2d209ecaa 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb index 71b0186817..7e9fe8d5c9 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb index e54f5ade9e..b126f894dc 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb index 369e4050a2..bca158ab8c 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb index 501b84712e..955f3737e7 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb index d3e7a37e99..7829ee44bb 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb index c2e1c23194..772261a8e5 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb index e7187193ab..75ddf844bd 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb index 1dc50ab284..b546d0ab80 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb index 1969c11a41..39dfad0f51 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb index 2b328fcb5c..3de3c8ade1 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb index 29ad5ed381..a52ce4ef37 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb index 89275bcc60..08cd6cb805 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University # Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb index 8cadfaf01c..2925e740d0 100644 --- a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb index 55c42a3a2a..d7d2c6c4b9 100644 --- a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb index 91fe6f6ad0..a7ceb87c96 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb index 6a70b4a91b..6150bb25f4 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb index 10ec978325..79cfa75c2a 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb index 40d198ac56..d100ae026a 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb index 462e4de80d..166fd30f2d 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb index dc07cf8e73..d4f12bfbff 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb index f31e876fb3..cdc20ab30b 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb index 2255756660..15caad06a9 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb index e9eb65c222..771933aaa0 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb index 77477064a3..97e0188ea6 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb index de40ee3f67..2c40cf55bc 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb index 180413f69a..c6b980ef49 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # Authors:: Dmitri Gribenko # License:: MIT/GPL diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb index c0b40996ef..276e9682fb 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb index 328e885523..e7e13a73a5 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb index eb9a1d735f..fafe9765da 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb index 612f9c2722..f116e81718 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb index 01d3cb3903..cb074cec82 100644 --- a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb index 317da17216..4f60dd03a4 100644 --- a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb index 06338adc4a..089de15774 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb index 231e47677d..25665337a8 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb index 969e305f7a..aaa3ed4288 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb index 1c62cf8c79..14fe2e3949 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb index a279ca9cfe..7739085476 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb index 3d55fa8b37..42145a7565 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb index 0fc601c08f..81b0377519 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb index da5fc1fe35..1919d75c76 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb index ca646fc803..07974e95af 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb index d33d2f609d..5e0919b8d2 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb index eda9b5471d..105b0630d6 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb index c5afb55411..20fb4bbb29 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb index 168757fc99..56ceb7f56d 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb index 1752b454c0..ca6cb154bb 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb index 6deb782dfa..c4fa0cbf6c 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb index e006ea7e7c..8febd4d488 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb index 56495202df..7415ab24e0 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb index 47dc079117..6945e77e67 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb index a74a373b02..dff2cc0d32 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb index 942efe165b..c77f843008 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb index 069a1da262..6f98d6e4e6 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb index 6270035f8e..14b447fd91 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb index 0a2de65b68..2c15a5a1a2 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb index 99ece8b2ee..9efc7c2982 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb index 852f1d5690..20d4dedd9b 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb index 545c4e897f..8bf3b36b6b 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb index 6fa7712f02..bb09c55c3e 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb index beeb21991f..f4664371e0 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb index 6545aea928..35dcbd7266 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb index 79b6bd5c14..3fef7369e5 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb index a3cfcfe427..c8a56f9e00 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb index ac3194591a..25b2371d64 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb index 9e1a3c9335..671e89fe5c 100644 --- a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb index 0922fa2f54..f3cc8ef6f7 100644 --- a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb index 650b72b2d1..8e339f64c1 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb index c762f6b172..4f376cb0ac 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb index d282a01625..c4ac97ff26 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb index 8742b33096..25ad274b56 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb index 06cf847f45..ede4708977 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-4.1.13.eb index 5db14f4933..26e45a4b96 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-4.1.13.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb index b99e09337b..29d1902d63 100644 --- a/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libharu/libharu-2.2.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb index 3353899f80..3cae554475 100644 --- a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb index d94b26172f..cc64728498 100644 --- a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb index b6a4e90b55..bbd436416b 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb index 5f7e332510..6ec957bdc2 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb index d4ab7d3d1a..f3130f6e0f 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Nils Christian # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb index 42e5627cba..e4351bddcf 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb index 03705cbf66..46203ea8f3 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb index af0813626f..97c6ded6bd 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb index b9e19c5be0..658c32d2f0 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb index 53fdf4afe8..ab9fb8348f 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb index 02008ee14f..75485425ce 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb index 3464b93ba6..95b686df33 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb index e1b69331f7..25554b2840 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb index 63af63ab50..50a0fd2812 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb index 8f88486cd2..df55442b24 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb index 8c09077972..c1b84b6840 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10-Perl-5.16.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb index b82229232b..7f6b9e72b5 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb index 759d160ad2..b12e9042ad 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb index 742ec13df2..578f64de52 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-4.1.13-Perl-5.16.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb index 44a5f81535..89fe1f89da 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0-Perl-5.16.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb index 717ee44342..2a22c67912 100644 --- a/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MUMmer/MUMmer-3.23-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb index 2679aed386..eb4529c9fa 100644 --- a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-i86linux64.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Andreas Panteli , # License:: MIT/GPL # diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb index 8eacf40614..a43b075cea 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb index 47688cb32f..3887c3f2e8 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb index 1254610dec..aa9f2cf5ec 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb index 3c40c02f6c..98f80aa50e 100644 --- a/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MetaVelvet/MetaVelvet-1.2.01-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb b/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb index 80fed94f3a..3a389bc529 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb b/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb index 844292c533..0b0b5e2f5e 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb index 17a800a1bc..e44bdfcabc 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb index c6adaea9eb..15e70c67a2 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb index 83d3c1bfae..3ada34b61a 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb index 3a96dbd533..30bfb15e5c 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb index 3b8797d5bb..035a464a69 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb index cfe158383c..16db259e01 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb index fa9565eb9f..563ed3421b 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb index 5b6a1de08a..e619b4f389 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb index 89a919ed7c..f5db8a5012 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb index f598293a1a..1d62a7dcd2 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb index b9f9b7edf6..70d4454ccd 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb index 1c8a8decf7..4e5d353f96 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb index 25a50552d0..561540d3fa 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb index b251c5f840..5f16618a92 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb index 06d09df896..3b76ca0f63 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb index 77469f2708..32ccd897a8 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb index b3aa2997ff..31301a6e46 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb index 8cfd7f68ed..0be92bc64e 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb index f1096b7261..3b1cfac77d 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb index e855c4c0d0..4bc522d420 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb index 386b34772e..a70c2bc669 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb index f63b096d4f..201a8dbdc9 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb index 6bf85ad43d..29a1febe39 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb index 09df2a0c35..b852c824c9 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb index 0ba7777227..aba8fddd6a 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb index f0b17f7472..2db6a9bb73 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb index 584d868204..6c069cf2fb 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb index 0b64a8f44b..d96c22866b 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb index 6064695138..02076165fe 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb index 92393ad75a..a3f69b41df 100644 --- a/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PAML/PAML-4.7-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb index 1e6b7d39f1..5d277564d7 100644 --- a/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAML/PAML-4.7-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA # Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb index fba7ab9812..e0b128b990 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb index 5a2f8faaa5..7189b64bdb 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb index 1cbbb1bdb5..b23b5833d7 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb index b990a6bb7f..64125e4f36 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb index fe6f9c183c..9ff30db1ba 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb index 3c83eded1e..6742cc942f 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PCC/PCC-20131024.eb b/easybuild/easyconfigs/p/PCC/PCC-20131024.eb index c9d9fe4964..221d36d825 100644 --- a/easybuild/easyconfigs/p/PCC/PCC-20131024.eb +++ b/easybuild/easyconfigs/p/PCC/PCC-20131024.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb index e1cb7c9686..061dd6e110 100644 --- a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb index b4369457a0..84d13bb360 100644 --- a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb index d33c8e327e..3fe8494379 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb index 8cd99a9435..7aa979a26c 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb index b75ffa08d6..5bb28dbaaf 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb index 10ff3bf7be..1e542acddf 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/q/qtop/qtop-53-1.eb b/easybuild/easyconfigs/q/qtop/qtop-53-1.eb index dd688814ab..c04c0cb73d 100644 --- a/easybuild/easyconfigs/q/qtop/qtop-53-1.eb +++ b/easybuild/easyconfigs/q/qtop/qtop-53-1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb index 9ad1de6333..4441372686 100644 --- a/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb b/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb index 443ee4c16e..113b26618f 100644 --- a/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb index e3da316e3b..c6400a38a6 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb index 3b3d73959f..55a37ca92e 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb index a2ead09a77..dc369a4ca4 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb index 4d7feb6681..d135e05be9 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb index 6caf016d9e..495ee12fa8 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb index 4ce9cd7f33..073affc93b 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb index 268907eca0..b9570c368a 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb index 2c7a3f540e..5b8825becb 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.18-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb index a82e11a8b8..e632ad1cd5 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb index 7e853c6516..d1a3148379 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb index 870b03a7cd..48efe7e0a7 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb index 71cb4b1412..9993040cdb 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb b/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb index fd364fc60a..9927f56e80 100644 --- a/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb +++ b/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb index 735d2697a7..8da8e28b17 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb index 758eb5c57e..05651770f2 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb index 23f6fa6d1b..3fda9e525f 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb index cf780cf1c4..0ce4a98f03 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo/SOAPdenovo-1.05-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb index 68b067f13d..f433805ea2 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb index ae7872b487..58fc8ec634 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb index a46ccc6c4e..74874fbe33 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb index fc426dabb6..5a4a79fb3e 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb index ef0f8103f6..0e9779499e 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb index 1569034a3f..365dfbb4b1 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb index ac09c643b2..ca0bee0057 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb index a1901c9006..96eed12422 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb index 96d1900fa0..874f105bfc 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb b/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb index e38af27edd..58cd192860 100644 --- a/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb +++ b/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb b/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb index 39b9f1d5b9..af40f4958d 100644 --- a/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb +++ b/easybuild/easyconfigs/t/Tesla-Deployment-Kit/Tesla-Deployment-Kit-5.319.43.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb index 70b655da91..2314825cf5 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Jens Timmerman # License:: GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb index 669e16179b..144c92606e 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb index 1f3263865a..deaed8f5fc 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb index f213aa7b1c..0b1d43e37e 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb index ad363f6853..ef414ccc38 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb index b18b85015f..e60254e68a 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb index 38f354ae34..4566c53776 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos , Jens Timmerman # License:: GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb index c9b82df09d..132fdbeeb9 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-0-linux-x86-64.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb index 7e3bccdd7f..c3d83422cb 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.11.0-2-linux-x86-64.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb b/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb index 472802866d..6144d45261 100644 --- a/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb +++ b/easybuild/easyconfigs/t/TotalView/TotalView-8.12.0-0-linux-x86-64.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb index 3131b88386..8f65a96e35 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb index 9189136131..8849734f1b 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb index 1d11638e90..286f9e74f0 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb index 3533a1c965..3d9b76d1f1 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb index c00899e4ad..fb24b1b64c 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-6.0.0-ictce-4.1.13-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb index 9af486d44e..a4f97aabce 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb index c41328c872..0aa4b0495e 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb index 7f7bc552d5..1c377cf16d 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb index 773850a3dd..3132cd2aab 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb index 0904d7213b..41782a4d2b 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb index 0fc7828f50..dd1224eef9 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb index 9607f1b9c0..7c373baaf1 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb index f041fceb9f..e5a3597f20 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb index 50813c780f..898d4cda78 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb index a0a0a8b09e..8e5bf1c81c 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb index 8120131a7f..96163b744c 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb index 1843c0777f..7fff5ef5b5 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.07-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb index c54c28eeaa..24b79e8841 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.09-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Thekla Loizou , Andreas Panteli # License:: MIT/GPL # diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb index 323617fa3a..2d3e76370b 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb index ef0be70d23..36873d32de 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb index 04e4629bf3..6054621fcc 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb index f2fb38047c..e53c48b717 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb index 408284e21e..3d637860aa 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 1cd8b28959..12cf06119f 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb index a2334e3825..e59097b639 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb index 8b01b4d207..37b9d91c99 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb index 6987cd593e..e3fb5188b9 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb index bac052c7ea..458b0f96d9 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb index d8cfca0953..7fcf38c560 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb index 713d3dcd62..9e8a6cb25a 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb index c85cf56c98..9a992f558c 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb index ed6f7d0a2e..1ca29d4749 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb index 671e5cf84d..d9bb674b26 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb index 80e78b0002..54b0aa906e 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ -- GitLab From e31ccc98fbfe96e1fda0a21508f35eb2ad60143e Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 9 Dec 2014 19:58:29 +0100 Subject: [PATCH 0165/1217] fix Valgrind header, too Signed-off-by: Fotis Georgatos --- .../v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb index c14a1322bd..b5dca0efce 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 LCSB, Ghent University +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Ghent University # Authors:: Fotis Georgatos , Ward Poelmans # License:: MIT/GPL # $Id$ -- GitLab From b01da7dc60a4832e86d390b0bae5188bedab7c39 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 9 Dec 2014 20:01:49 +0100 Subject: [PATCH 0166/1217] be fair about where NTUA is listed Signed-off-by: Fotis Georgatos --- .../y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb | 2 +- .../y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb | 2 +- .../y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb index 956d7cf905..587b16d748 100644 --- a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2013 Uni.Lu/LCSB # Authors:: Nils Christian # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb index 9b65dc31cf..a394ff11d0 100644 --- a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2013 Uni.Lu/LCSB # Authors:: Nils Christian # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb index 8763d9f965..94ef6fae9e 100644 --- a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2013 Uni.Lu/LCSB, NTUA +# Copyright:: Copyright 2013 Uni.Lu/LCSB # Authors:: Nils Christian # License:: MIT/GPL # $Id$ -- GitLab From f50c1cdf29ae061d4725beeb2dbdacde40c91a03 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 9 Dec 2014 20:06:11 +0100 Subject: [PATCH 0167/1217] add easyconfig file for intel/2015a --- easybuild/easyconfigs/i/intel/intel-2015a.eb | 21 ++++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 easybuild/easyconfigs/i/intel/intel-2015a.eb diff --git a/easybuild/easyconfigs/i/intel/intel-2015a.eb b/easybuild/easyconfigs/i/intel/intel-2015a.eb new file mode 100644 index 0000000000..2cb7f99ce4 --- /dev/null +++ b/easybuild/easyconfigs/i/intel/intel-2015a.eb @@ -0,0 +1,21 @@ +easyblock = "Toolchain" + +name = 'intel' +version = '2015a' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2015.1.133' +gccsuff = '-GCC-4.9.2' + +dependencies = [ + ('icc', compver, gccsuff), + ('ifort', compver, gccsuff), + ('impi', '5.0.2.044', '', ('iccifort', '%s%s' % (compver, gccsuff))), + ('imkl', '11.2.1.133', '', ('iimpi', '7.2.3%s' % gccsuff)), +] + +moduleclass = 'toolchain' -- GitLab From 997a100713adc8f8200039f88131c0f12100d7d7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 9 Dec 2014 20:08:18 +0100 Subject: [PATCH 0168/1217] add easyconfig file for foss/2015a + deps --- .../f/FFTW/FFTW-3.3.4-gompi-2015a.eb | 32 ++++++++++++ easybuild/easyconfigs/f/foss/foss-2015a.eb | 37 ++++++++++++++ easybuild/easyconfigs/g/gompi/gompi-2015a.eb | 22 +++++++++ .../h/hwloc/hwloc-1.10.0-GCC-4.9.2.eb | 21 ++++++++ .../n/numactl/numactl-2.0.10-GCC-4.9.2.eb | 22 +++++++++ .../OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb | 49 +++++++++++++++++++ .../o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb | 36 ++++++++++++++ ...ompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb | 25 ++++++++++ 8 files changed, 244 insertions(+) create mode 100644 easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015a.eb create mode 100644 easybuild/easyconfigs/f/foss/foss-2015a.eb create mode 100644 easybuild/easyconfigs/g/gompi/gompi-2015a.eb create mode 100644 easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015a.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015a.eb new file mode 100644 index 0000000000..b6d23c7948 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015a.eb @@ -0,0 +1,32 @@ +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'gompi', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-quad-precision", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/foss/foss-2015a.eb b/easybuild/easyconfigs/f/foss/foss-2015a.eb new file mode 100644 index 0000000000..a7ffc225bc --- /dev/null +++ b/easybuild/easyconfigs/f/foss/foss-2015a.eb @@ -0,0 +1,37 @@ +easyblock = "Toolchain" + +name = 'foss' +version = '2015a' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, including + OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp_name = 'GCC' +comp_version = '4.9.2' +comp = (comp_name, comp_version) + +blaslib = 'OpenBLAS' +blasver = '0.2.13' +blas = '%s-%s' % (blaslib, blasver) +blassuff = '-LAPACK-3.5.0' + +# toolchain used to build goolf dependencies +comp_mpi_tc_name = 'gompi' +comp_mpi_tc_ver = "%s" % version +comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) + +# compiler toolchain depencies +# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain +# because of toolchain preperation functions +dependencies = [ + comp, + ('OpenMPI', '1.8.3', '', comp), + (blaslib, blasver, blassuff, comp), + ('FFTW', '3.3.4', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/gompi/gompi-2015a.eb b/easybuild/easyconfigs/g/gompi/gompi-2015a.eb new file mode 100644 index 0000000000..c4f7317ea1 --- /dev/null +++ b/easybuild/easyconfigs/g/gompi/gompi-2015a.eb @@ -0,0 +1,22 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = '2015a' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compname = 'GCC' +compver = '4.9.2' +comp = (compname, compver) + +# compiler toolchain dependencies +dependencies = [ + comp, + ('OpenMPI', '1.8.3', '', comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.9.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.9.2.eb new file mode 100644 index 0000000000..ad5c55a64a --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.9.2.eb @@ -0,0 +1,21 @@ +name = 'hwloc' +version = '1.10.0' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +dependencies = [('numactl', '2.0.10')] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb new file mode 100644 index 0000000000..a4ac2d1070 --- /dev/null +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb @@ -0,0 +1,22 @@ +name = 'numactl' +version = '2.0.10' + +homepage = 'http://oss.sgi.com/projects/libnuma/' +description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. +It does this by supplying a NUMA memory policy to the operating system before running your program. +The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" + +sources = [SOURCE_TAR_GZ] +source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +skipsteps = ['configure'] +installopts = "PREFIX=%(installdir)s libdir='${prefix}/lib'" + +sanity_check_paths = { + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb new file mode 100644 index 0000000000..182dbbd22f --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb @@ -0,0 +1,49 @@ +name = 'OpenBLAS' +version = '0.2.13' + +lapackver = '3.5.0' +versionsuffix = '-LAPACK-%s' % lapackver + +homepage = 'http://xianyi.github.com/OpenBLAS/' +description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +lapack_src = 'lapack-%s.tgz' % lapackver +large_src = 'large.tgz' +timing_src = 'timing.tgz' +sources = [ + 'v%(version)s.tar.gz', + lapack_src, + large_src, + timing_src, +] +source_urls = [ + # order matters, trying to download the LAPACK tarball from GitHub causes trouble + "http://www.netlib.org/lapack/", + "http://www.netlib.org/lapack/timing/", + "https://github.com/xianyi/OpenBLAS/archive/", +] + +patches = [ + (lapack_src, '.'), # copy LAPACK tarball to unpacked OpenBLAS dir + (large_src, '.'), + (timing_src, '.'), +] + +skipsteps = ['configure'] + +buildopts = 'BINARY=64 USE_THREAD=1 CC="$CC" FC="$F77" NO_AFFINITY=1' +installopts = "USE_THREAD=1 PREFIX=%(installdir)s" + +# extensive testing can be enabled by uncommenting the line below +#runtest = 'PATH=.:$PATH lapack-timing' + +sanity_check_paths = { + 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', + 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', + 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'dirs': [], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb new file mode 100644 index 0000000000..a4320661c9 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb @@ -0,0 +1,36 @@ +name = 'OpenMPI' +version = "1.8.3" + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +dependencies = [('hwloc', '1.10.0')] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +# needed for --with-openib +if OS_NAME in ['debian', 'ubuntu']: + osdependencies = ['libibverbs-dev'] +else: + # OK for OS_NAME == redhat, fedora, RHEL, SL, centos + osdependencies = ['libibverbs-devel'] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_mpifh", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb new file mode 100644 index 0000000000..be40d5d1ed --- /dev/null +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb @@ -0,0 +1,25 @@ +name = 'ScaLAPACK' +version = '2.0.2' + +homepage = 'http://www.netlib.org/scalapack/' +description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines + redesigned for distributed memory MIMD parallel computers.""" + +toolchain = {'name': 'gompi', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = [SOURCELOWER_TGZ] + +blaslib = 'OpenBLAS' +blasver = '0.2.13' +blassuff = '-LAPACK-3.5.0' + +versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) + +dependencies = [(blaslib, blasver, blassuff, ('GCC', '4.9.2'))] + +## parallel build tends to fail, so disabling it +parallel = 1 + +moduleclass = 'numlib' -- GitLab From 9b87ad8fef05cb897a540069427a5391fdba9179 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 9 Dec 2014 20:15:05 +0100 Subject: [PATCH 0169/1217] add easyconfig for HPL 2.1 with foss/2015a --- .../easyconfigs/h/HPL/HPL-2.0-foss-2015a.eb | 18 ++++++++++++++++++ .../easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb | 18 ++++++++++++++++++ 2 files changed, 36 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.0-foss-2015a.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.0-foss-2015a.eb b/easybuild/easyconfigs/h/HPL/HPL-2.0-foss-2015a.eb new file mode 100644 index 0000000000..576cc9a699 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.0-foss-2015a.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.0' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic +on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the +High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb new file mode 100644 index 0000000000..225cb3be6a --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' -- GitLab From 32f935212d977c033ced20f4cdb26ef2348d9659 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 9 Dec 2014 20:15:23 +0100 Subject: [PATCH 0170/1217] add easyconfig for HPL 2.1 with intel/2015a --- .../easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb new file mode 100644 index 0000000000..97b6ceedd3 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' -- GitLab From b07ed3b26e33fd7bc1388698af3f9bc9204706be Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 9 Dec 2014 21:28:41 +0100 Subject: [PATCH 0171/1217] fix numactl build procedure, it's now using automake (configure/make/make install) --- easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb | 3 --- 1 file changed, 3 deletions(-) diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb index a4ac2d1070..86b6e12faa 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb @@ -11,9 +11,6 @@ source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] toolchain = {'name': 'GCC', 'version': '4.9.2'} -skipsteps = ['configure'] -installopts = "PREFIX=%(installdir)s libdir='${prefix}/lib'" - sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], 'dirs': ['share/man', 'include'] -- GitLab From 29c54cc373076d544658c594ac58c955a6357333 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 9 Dec 2014 21:56:55 +0100 Subject: [PATCH 0172/1217] remove faulty HPL easyconfig --- .../easyconfigs/h/HPL/HPL-2.0-foss-2015a.eb | 18 ------------------ 1 file changed, 18 deletions(-) delete mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.0-foss-2015a.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.0-foss-2015a.eb b/easybuild/easyconfigs/h/HPL/HPL-2.0-foss-2015a.eb deleted file mode 100644 index 576cc9a699..0000000000 --- a/easybuild/easyconfigs/h/HPL/HPL-2.0-foss-2015a.eb +++ /dev/null @@ -1,18 +0,0 @@ -name = 'HPL' -version = '2.0' - -homepage = 'http://www.netlib.org/benchmark/hpl/' -description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic -on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the -High Performance Computing Linpack Benchmark.""" - -toolchain = {'name': 'foss', 'version': '2014b'} -toolchainopts = {'optarch': True, 'usempi': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] - -# fix Make dependencies, so parallel build also works -patches = ['HPL_parallel-make.patch'] - -moduleclass = 'tools' -- GitLab From 8e9f976bb789035fc03a786d9dafc67beb34584e Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 9 Dec 2014 22:04:05 +0100 Subject: [PATCH 0173/1217] also fix wiktor.jurkowski@tgac.ac.uk Signed-off-by: Fotis Georgatos --- .../easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb | 2 +- .../easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb | 2 +- .../easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb | 2 +- .../easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb | 2 +- .../easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb | 2 +- easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb | 2 +- .../easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb | 2 +- .../easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb | 2 +- .../easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb | 2 +- .../easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb | 2 +- .../g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb | 2 +- .../g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb | 2 +- .../easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb | 2 +- .../easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb | 2 +- .../easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb | 2 +- .../easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb | 2 +- .../easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb | 2 +- easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb | 2 +- 18 files changed, 18 insertions(+), 18 deletions(-) diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb index c9e0665853..85881f3e38 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb index 512b6f6e0b..8dac71d952 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolf-1.4.10-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb index 1213defdde..10de39383d 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb index ba47f06f99..7d4a515bd7 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-goolfc-1.3.12-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb index 0c7271116a..11decefff1 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb index b2d209ecaa..7bc4e4ad92 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.1-ictce-5.3.0-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb index 7e9fe8d5c9..c6a01d5cb9 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb index b126f894dc..f47fc727b1 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmpolf-1.4.8-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb index bca158ab8c..c1dc7fabd0 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb index 955f3737e7..aa2709aff9 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-gmvolf-1.7.12-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb index 7829ee44bb..6a5829cb21 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb index 772261a8e5..897f8573da 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goalf-1.1.0-no-OFED-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb index 75ddf844bd..eaada284fd 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb index b546d0ab80..95002c6f56 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolf-1.4.10-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb index 39dfad0f51..1de33cf464 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb index 3de3c8ade1..367a63d0a3 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-goolfc-2.6.10-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb index a52ce4ef37..4e7a111b3a 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-hybrid.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb index 08cd6cb805..1d36cf5099 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-ictce-5.5.0-mt.eb @@ -2,7 +2,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ # George Tsouloupas , Kenneth Hoste # License:: MIT/GPL # $Id$ -- GitLab From 94e88a94619b428d713b86bfb5c2e1195f8b5cec Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 10 Dec 2014 09:04:03 +0100 Subject: [PATCH 0174/1217] add -wd175 to $CFLAGS to disable error when building binutils with Intel compilers --- easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb | 3 +++ 1 file changed, 3 insertions(+) diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb b/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb index 772e2fbf30..0cba712669 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb @@ -13,6 +13,9 @@ dependencies = [ ('zlib', '1.2.8'), ] +# disable warning/error #175 ("subscript out of range") +buildopts = 'CFLAGS="$CFLAGS -wd175"' + binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] sanity_check_paths = { -- GitLab From 52ef0edf1bc38a27fc90d9bd61312cceb9f61d04 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 10 Dec 2014 10:14:56 +0100 Subject: [PATCH 0175/1217] disable symbol lookup in cairo --- easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb | 3 +++ 1 file changed, 3 insertions(+) diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb index 6e47d0bc01..ac1b504419 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb @@ -21,4 +21,7 @@ dependencies = [ ('bzip2', '1.0.6'), ] +# disable symbol lookup, which requires -lbfd, to avoid link issues with (non-PIC) libiberty.a provided by GCC +configopts = "--enable-symbol-lookup=no" + moduleclass = 'vis' -- GitLab From 60aabebeb15f30fc252db0b9241a6d81ad8e311f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 10 Dec 2014 10:19:00 +0100 Subject: [PATCH 0176/1217] disable symbol lookup in cairo --- .../easyconfigs/c/cairo/cairo-1.12.14-goalf-1.1.0-no-OFED.eb | 3 +++ easybuild/easyconfigs/c/cairo/cairo-1.12.14-goolf-1.4.10.eb | 3 +++ easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb | 3 +++ easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-4.1.13.eb | 3 +++ 4 files changed, 12 insertions(+) diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goalf-1.1.0-no-OFED.eb index 6264b44320..d0dfd21655 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goalf-1.1.0-no-OFED.eb @@ -21,4 +21,7 @@ dependencies = [ ('bzip2', '1.0.6'), ] +# disable symbol lookup, which requires -lbfd, to avoid link issues with (non-PIC) libiberty.a provided by GCC +configopts = "--enable-symbol-lookup=no" + moduleclass = 'vis' diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goolf-1.4.10.eb index fe30ba2cfb..a6301f0e71 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goolf-1.4.10.eb @@ -21,4 +21,7 @@ dependencies = [ ('bzip2', '1.0.6'), ] +# disable symbol lookup, which requires -lbfd, to avoid link issues with (non-PIC) libiberty.a provided by GCC +configopts = "--enable-symbol-lookup=no" + moduleclass = 'vis' diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb index 768941a832..060d6d0322 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb @@ -21,4 +21,7 @@ dependencies = [ ('bzip2', '1.0.6'), ] +# disable symbol lookup, which requires -lbfd, to avoid link issues with (non-PIC) libiberty.a provided by GCC +configopts = "--enable-symbol-lookup=no" + moduleclass = 'vis' diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-4.1.13.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-4.1.13.eb index c623937595..05f94ef3f8 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-4.1.13.eb @@ -21,4 +21,7 @@ dependencies = [ ('bzip2', '1.0.6'), ] +# disable symbol lookup, which requires -lbfd, to avoid link issues with (non-PIC) libiberty.a provided by GCC +configopts = "--enable-symbol-lookup=no" + moduleclass = 'vis' -- GitLab From 5cfb9de38252efd9fd5a2a37eab503368dae7d01 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Wed, 10 Dec 2014 11:56:24 +0100 Subject: [PATCH 0177/1217] add Quip Signed-off-by: Fotis Georgatos --- .../q/Quip/Quip-1.1.8-GCC-4.8.2.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb diff --git a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb new file mode 100644 index 0000000000..47c8f4a6cc --- /dev/null +++ b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb @@ -0,0 +1,29 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +name = 'Quip' +version = '1.1.8' + +homepage = 'http://homes.cs.washington.edu/~dcjones/quip' +description = """Quip compresses next-generation sequencing data with extreme prejudice. + It supports input and output in the FASTQ and SAM/BAM formats, + compressing large datasets to as little as 15% of their original size.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# eg. http://homes.cs.washington.edu/~dcjones/quip/quip-1.1.8.tar.gz +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +sanity_check_paths = { + 'files': ["quip"], + 'dirs': [] +} + +moduleclass = 'tools' -- GitLab From 6e0b86d409154f6b60649b183ce317b9b3fdfe39 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Wed, 10 Dec 2014 11:58:19 +0100 Subject: [PATCH 0178/1217] state which toolchain Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb index 47c8f4a6cc..e34b7fe112 100644 --- a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2014 Uni.Lu, NTUA +# Copyright:: Copyright 2012-2014 NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ @@ -15,7 +15,7 @@ description = """Quip compresses next-generation sequencing data with extreme pr It supports input and output in the FASTQ and SAM/BAM formats, compressing large datasets to as little as 15% of their original size.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'GCC', 'version': '4.8.2'} # eg. http://homes.cs.washington.edu/~dcjones/quip/quip-1.1.8.tar.gz sources = [SOURCELOWER_TAR_GZ] -- GitLab From c0950bb40f746b51318c0e04c4a3331a9fa71d87 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Wed, 10 Dec 2014 12:11:03 +0100 Subject: [PATCH 0179/1217] supply working version of quip plz Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb index e34b7fe112..3a9fc3b2e2 100644 --- a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb @@ -22,7 +22,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] sanity_check_paths = { - 'files': ["quip"], + 'files': ["bin/quip"], 'dirs': [] } -- GitLab From 6f033e65dab96d09824dc7d9038aa40fc7e01e6c Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Wed, 10 Dec 2014 12:45:24 +0100 Subject: [PATCH 0180/1217] Bison added for GObject-Introspection --- .../GObject-Introspection-1.42.0-intel-2014b.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb index a7d8444e44..bb74f6f055 100644 --- a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb +++ b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb @@ -15,6 +15,7 @@ sources = [SOURCELOWER_TAR_XZ] dependencies = [ ('GLib', '2.40.0'), + ('Bison', '3.0.2'), ] sanity_check_paths = { -- GitLab From d4556c469fcf7acee1b7de50c7a21f1dd6025b6b Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Wed, 10 Dec 2014 13:02:24 +0100 Subject: [PATCH 0181/1217] add ZPAQ --- .../easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb diff --git a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb new file mode 100644 index 0000000000..2b30364a1b --- /dev/null +++ b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb @@ -0,0 +1,35 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +easyblock = 'MakeCp' + +name = 'ZPAQ' +version = '6.57' + +homepage = 'http://mattmahoney.net/dc/zpaq.html' +description = """Quip compresses next-generation sequencing data with extreme prejudice. + It supports input and output in the FASTQ and SAM/BAM formats, + compressing large datasets to as little as 15% of their original size.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +# eg. http://mattmahoney.net/dc/zpaq657.zip +sources = ['%%(namelower)s%s.zip' % ''.join(version.split('.'))] +source_urls = ['http://mattmahoney.net/dc/'] + +makeopts = ' && pod2man zpaq.pod > zpaq.1' + +files_to_copy = [(["zpaq"], 'bin'), (["zpaq.1"], 'share/man')] + +sanity_check_paths = { + 'files': ["bin/zpaq", "share/man/zpaq.1"], + 'dirs': [] +} + +moduleclass = 'tools' -- GitLab From 98297d85409e15060300e02ffc76305f2bad1feb Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Wed, 10 Dec 2014 17:58:17 +0100 Subject: [PATCH 0182/1217] add fqzcomp --- .../f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb diff --git a/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb new file mode 100644 index 0000000000..3ca5906073 --- /dev/null +++ b/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb @@ -0,0 +1,34 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +easyblock = 'MakeCp' + +name = 'fqzcomp' +version = '4.6' + +homepage = 'http://sourceforge.net/projects/fqzcomp/' +description = """Fqzcomp is a basic fastq compressor, designed primarily for high performance. + Despite that it is comparable to bzip2 for compression levels.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +# eg. http://sourceforge.net/projects/fqzcomp/files/fqzcomp-4.6.tar.gz/download +sources = [SOURCE_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +skipsteps = ['configure'] + +files_to_copy = [(['fqz_comp'], 'bin')] + +sanity_check_paths = { + 'files': ["bin/fqz_comp"], + 'dirs': [] +} + +moduleclass = 'bio' -- GitLab From 5b45bf8b195803697ab6d1ca1c453d35e269a609 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Wed, 10 Dec 2014 18:00:49 +0100 Subject: [PATCH 0183/1217] add DSRC --- .../d/DSRC/DSRC-2.0rc-linux-64-bit.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb diff --git a/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb new file mode 100644 index 0000000000..f3b7c1168d --- /dev/null +++ b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb @@ -0,0 +1,34 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +## + +easyblock = 'Binary' + +name = 'DSRC' +version = '2.0rc' +versionsuffix = '-linux-64-bit' + +homepage = 'http://sun.aei.polsl.pl/dsrc' +description = """DNA Sequence Reads Compression is an application designed for compression of data files + containing reads from DNA sequencing in FASTQ format. The amount of such files can be huge, e.g., a few + (or tens) of gigabytes, so a need for a robust data compression tool is clear. Usually universal compression + programs like gzip or bzip2 are used for this purpose, but it is obvious that a specialized tool can work better.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# fi. http://sun.aei.polsl.pl/dsrc/download/2.0rc/dsrc +sources = [name.lower()] +source_urls = [homepage + '/download/%(version)s/'] + +sanity_check_paths = { + 'files': ['dsrc'], + 'dirs': [] +} + +moduleclass = 'bio' -- GitLab From d607a2a3d3c2e092ab6fad9e0324650f068ceb55 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Wed, 10 Dec 2014 18:11:34 +0100 Subject: [PATCH 0184/1217] add SCALCE --- .../s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb | 36 +++++++++++++++++++ 1 file changed, 36 insertions(+) create mode 100644 easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb diff --git a/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb b/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb new file mode 100644 index 0000000000..a08d8c5af1 --- /dev/null +++ b/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb @@ -0,0 +1,36 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +easyblock = 'MakeCp' + +name = 'SCALCE' +version = '2.7' + +homepage = 'http://scalce.sourceforge.net/Home' +description = """SCALCE [skeɪlz] is a FASTQ compression tool that uses locally consistet parsing + to obtain better compression rate. SCALCE has been specifically designed for Illumina reads but it can + handle other technologies (that generate base pair reads) if the read length is the same throughout the file.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +# eg. http://sourceforge.net/projects/scalce/files/2.7/scalce-v2.7-src.tar.gz/download +sources = ['%(namelower)s-v%(version)s-src.tar.gz'] +source_urls = [SOURCEFORGE_SOURCE] + +preconfigopts = 'cd zlib-1.2.8 &&' +makeopts = '-C zlib-1.2.8 && make all' + +files_to_copy = [(['scalce'], 'bin')] + +sanity_check_paths = { + 'files': ["bin/scalce"], + 'dirs': [] +} + +moduleclass = 'bio' -- GitLab From 37b4af6210d416099a63770f43e58d8957f610d4 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Wed, 10 Dec 2014 18:12:40 +0100 Subject: [PATCH 0185/1217] ZPAQ is really bio category --- easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb index 2b30364a1b..0911f911da 100644 --- a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb @@ -32,4 +32,4 @@ sanity_check_paths = { 'dirs': [] } -moduleclass = 'tools' +moduleclass = 'bio' -- GitLab From 6830a0e8d4938a520caa3cbb52a9f81ae2c9db67 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Wed, 10 Dec 2014 19:01:10 +0100 Subject: [PATCH 0186/1217] add fastqz --- .../f/fastqz/fastqz-1.5-GCC-4.8.2.eb | 38 +++++++++++++++++++ .../easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb | 2 +- 2 files changed, 39 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb diff --git a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb new file mode 100644 index 0000000000..42feaece95 --- /dev/null +++ b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## + +easyblock = 'MakeCp' + +name = 'fastqz' +version = '1.5' + +homepage = 'http://mattmahoney.net/dc/fastqz/' +description = """fastqz is a compressor for FASTQ files. FASTQ is the output of DNA sequencing machines. + It is one of the compressors described in the paper: Bonfield JK, Mahoney MV (2013) Compression of + FASTQ and SAM Format Sequencing Data. (mirror) PLoS ONE 8(3): e59190. doi:10.1371/journal.pone.0059190""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +dependencies = [('ZPAQ', '6.57')] + +# eg. http://mattmahoney.net/dc/fastqz/fastqz15.cpp & http://mattmahoney.net/dc/fastqz/fapack.cpp +sources = [('fastqz15.cpp', 'cp %s %(builddir)s/fastqz.cpp'), ('fapack.cpp', 'cp %s %(builddir)s')] +source_urls = [homepage] + +premakeopts = 'g++ -O3 -msse2 -s -lpthread fastqz.cpp $EBROOTZPAQ/include/libzpaq.cpp -o fastqz' +premakeopts += '&& g++ -O3 -s fapack.cpp -o fapack && /bin/true ' + +files_to_copy = [(['fastqz', 'fapack'], 'bin')] + +sanity_check_paths = { + 'files': ["bin/fastqz", "bin/fapack"], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb index 0911f911da..feed550444 100644 --- a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb @@ -25,7 +25,7 @@ source_urls = ['http://mattmahoney.net/dc/'] makeopts = ' && pod2man zpaq.pod > zpaq.1' -files_to_copy = [(["zpaq"], 'bin'), (["zpaq.1"], 'share/man')] +files_to_copy = [(["zpaq"], 'bin'), (["zpaq.1"], 'share/man'), (["libzpaq.h", "libzpaq.cpp"], 'include')] sanity_check_paths = { 'files': ["bin/zpaq", "share/man/zpaq.1"], -- GitLab From d40818d8966ed3e67b3b94e0ef3ef451bfb25c55 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Wed, 10 Dec 2014 19:06:46 +0100 Subject: [PATCH 0187/1217] fix tiny little bugs, left & right --- easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb | 3 +-- easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb | 3 ++- easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb | 2 +- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb index f3b7c1168d..8c4a091d7f 100644 --- a/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb +++ b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb @@ -1,11 +1,10 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2014 Uni.Lu, NTUA +# Copyright:: Copyright 2012-2014 NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ -# ## easyblock = 'Binary' diff --git a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb index 42feaece95..5946229fc3 100644 --- a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb @@ -22,7 +22,8 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} dependencies = [('ZPAQ', '6.57')] # eg. http://mattmahoney.net/dc/fastqz/fastqz15.cpp & http://mattmahoney.net/dc/fastqz/fapack.cpp -sources = [('fastqz15.cpp', 'cp %s %(builddir)s/fastqz.cpp'), ('fapack.cpp', 'cp %s %(builddir)s')] +minver = ''.join(version.split('.')) +sources = [('fastqz%s.cpp' % minver, 'cp %s %(builddir)s/fastqz.cpp'), ('fapack.cpp', 'cp %s %(builddir)s')] source_urls = [homepage] premakeopts = 'g++ -O3 -msse2 -s -lpthread fastqz.cpp $EBROOTZPAQ/include/libzpaq.cpp -o fastqz' diff --git a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb index 3a9fc3b2e2..c3812cfb0a 100644 --- a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb @@ -26,4 +26,4 @@ sanity_check_paths = { 'dirs': [] } -moduleclass = 'tools' +moduleclass = 'bio' -- GitLab From 9f53981668bbcd22f8b10785c19e50f413ea906b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bal=C3=A1zs=20Hajgat=C3=B3?= Date: Wed, 10 Dec 2014 19:31:21 +0100 Subject: [PATCH 0188/1217] rainling whitespaces removed --- .../easyconfigs/g/GSSAPI/GSSAPI-0.27-intel-2014b-Perl-5.20.0.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/g/GSSAPI/GSSAPI-0.27-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/g/GSSAPI/GSSAPI-0.27-intel-2014b-Perl-5.20.0.eb index c0f5936e58..fc5eb6da7b 100644 --- a/easybuild/easyconfigs/g/GSSAPI/GSSAPI-0.27-intel-2014b-Perl-5.20.0.eb +++ b/easybuild/easyconfigs/g/GSSAPI/GSSAPI-0.27-intel-2014b-Perl-5.20.0.eb @@ -24,5 +24,3 @@ dependencies = [ options = {'modulename': 'GSSAPI'} moduleclass = 'system' - - -- GitLab From ce035ebb36f3b9d0fa2d305244f67e1c994fe587 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bal=C3=A1zs=20Hajgat=C3=B3?= Date: Wed, 10 Dec 2014 19:33:07 +0100 Subject: [PATCH 0189/1217] Update Kerberos_V5-1.12.2-intel-2014b.eb --- .../k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb | 10 ++++------ 1 file changed, 4 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb b/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb index 13ce6a0018..ced08473ce 100644 --- a/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb +++ b/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb @@ -13,14 +13,12 @@ toolchain = {'name': 'intel', 'version': '2014b'} sources = ['krb5-%(version)s-signed.tar'] source_urls = ['http://web.mit.edu/kerberos/dist/krb5/%(version_major_minor)s/'] -preconfigopts = 'tar xvf krb5-%(version)s.tar.gz && cd krb5-%(version)s/src && ' - -prebuildopts = 'cd krb5-%(version)s/src && ' - -preinstallopts = 'cd krb5-%(version)s/src && ' - builddependencies = [('Bison', '3.0.2')] +prebuildopts = "cd krb5-%(version)s/src && " +preinstallopts = prebuildopts +preconfigopts = "tar xvf krb5-%(version)s.tar.gz && " + prebuildopts + sanity_check_paths = { 'files': ['bin/krb5-config', 'bin/gss-client', 'bin/kadmin', 'sbin/kdb5_util', 'sbin/gss-server', 'sbin/kadmind', -- GitLab From c2fabf9db298032f47a2fc6425b8d6af889d6a09 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 10 Dec 2014 21:01:02 +0100 Subject: [PATCH 0190/1217] use --allow-multiple-definition in $LDFLAGS for cairo built with ictce/3.2.2.u3 --- easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb | 3 +++ 1 file changed, 3 insertions(+) diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb index 060d6d0322..699fcbc505 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb @@ -24,4 +24,7 @@ dependencies = [ # disable symbol lookup, which requires -lbfd, to avoid link issues with (non-PIC) libiberty.a provided by GCC configopts = "--enable-symbol-lookup=no" +# avoid linker complaining over multiple definitions of 'fread' +buildopts = 'CFLAGS="$CFLAGS -Wl,--allow-multiple-definition" V=1' + moduleclass = 'vis' -- GitLab From 638627b955793263dc23f36b27ec1bdafbef6d97 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 10 Dec 2014 21:03:31 +0100 Subject: [PATCH 0191/1217] fix style remark in SWIG easyconfigs --- .../s/SWIG/SWIG-2.0.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb | 6 +++--- .../s/SWIG/SWIG-2.0.4-goolf-1.4.10-Python-2.7.3.eb | 6 +++--- .../s/SWIG/SWIG-2.0.4-ictce-4.0.6-Python-2.7.3.eb | 6 +++--- .../s/SWIG/SWIG-2.0.4-ictce-5.3.0-Python-2.7.3.eb | 6 +++--- .../s/SWIG/SWIG-3.0.2-intel-2014b-Python-2.7.8.eb | 6 +++--- 5 files changed, 15 insertions(+), 15 deletions(-) diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 4fdd24ef9e..e586e8833d 100644 --- a/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -16,8 +16,8 @@ pythonversion = '2.7.3' versionsuffix = '-%s-%s' % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('PCRE', '8.12'), - ] + (python, pythonversion), + ('PCRE', '8.12'), +] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-goolf-1.4.10-Python-2.7.3.eb index fbc5ef3f1f..f6f7b55c8d 100644 --- a/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-goolf-1.4.10-Python-2.7.3.eb @@ -16,8 +16,8 @@ pythonversion = '2.7.3' versionsuffix = '-%s-%s' % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('PCRE', '8.12'), - ] + (python, pythonversion), + ('PCRE', '8.12'), +] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-ictce-4.0.6-Python-2.7.3.eb index 57d5bf84e7..9c2ffd60e1 100644 --- a/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-ictce-4.0.6-Python-2.7.3.eb @@ -16,8 +16,8 @@ pythonversion = '2.7.3' versionsuffix = '-%s-%s' % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('PCRE', '8.12'), - ] + (python, pythonversion), + ('PCRE', '8.12'), +] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-ictce-5.3.0-Python-2.7.3.eb index 534ef903d8..88cc8c6e98 100644 --- a/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.4-ictce-5.3.0-Python-2.7.3.eb @@ -17,8 +17,8 @@ pythonversion = '2.7.3' versionsuffix = '-%s-%s' % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('PCRE', '8.12'), - ] + (python, pythonversion), + ('PCRE', '8.12'), +] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-3.0.2-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.2-intel-2014b-Python-2.7.8.eb index 7ad794f78a..3d23a1f84e 100644 --- a/easybuild/easyconfigs/s/SWIG/SWIG-3.0.2-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.2-intel-2014b-Python-2.7.8.eb @@ -16,8 +16,8 @@ pythonversion = '2.7.8' versionsuffix = '-%s-%s' % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('PCRE', '8.35'), - ] + (python, pythonversion), + ('PCRE', '8.35'), +] moduleclass = 'devel' -- GitLab From 9770165842cd1fc972d7527373bbd2ed0e4613df Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bal=C3=A1zs=20Hajgat=C3=B3?= Date: Thu, 11 Dec 2014 09:46:07 +0100 Subject: [PATCH 0192/1217] Empty lines deleted --- .../easyconfigs/d/DBD-mysql/DBD-mysql-intel-2014b-Perl-5.20.0.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-intel-2014b-Perl-5.20.0.eb index 05a96cbcf8..2bcf9d9a0e 100644 --- a/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-intel-2014b-Perl-5.20.0.eb +++ b/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-intel-2014b-Perl-5.20.0.eb @@ -20,7 +20,6 @@ dependencies = [ ("MySQL", "5.6.20", "-clientonly"), ] - options = {'modulename': 'DBD::mysql'} moduleclass = 'data' -- GitLab From 7de2140bbec001736103caaf5d5b7e7d4cc99734 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bal=C3=A1zs=20Hajgat=C3=B3?= Date: Thu, 11 Dec 2014 09:47:53 +0100 Subject: [PATCH 0193/1217] OpenSSL optional dependency (commented out) --- .../easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb b/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb index fbf851a0cf..39773d3294 100644 --- a/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb +++ b/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb @@ -20,6 +20,7 @@ dependencies = [ ('libevent', '2.0.21'), ('libreadline', '6.3'), ('zlib', '1.2.8'), +# ('OpenSSL', '1.0.1i'), # OS dependency should be preferred for security reasons ] builddependencies = [ -- GitLab From 6c32ad50e77c233803bbbc0ff42964550b65a1a2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 11 Dec 2014 10:29:56 +0100 Subject: [PATCH 0194/1217] don't touch obsolete ictce/3.2.2.u3 easyconfig for cairo --- .../easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb | 6 ------ 1 file changed, 6 deletions(-) diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb index 699fcbc505..768941a832 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb @@ -21,10 +21,4 @@ dependencies = [ ('bzip2', '1.0.6'), ] -# disable symbol lookup, which requires -lbfd, to avoid link issues with (non-PIC) libiberty.a provided by GCC -configopts = "--enable-symbol-lookup=no" - -# avoid linker complaining over multiple definitions of 'fread' -buildopts = 'CFLAGS="$CFLAGS -Wl,--allow-multiple-definition" V=1' - moduleclass = 'vis' -- GitLab From a8e483627f0f09381e6a2d733927e7a7b353a306 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bal=C3=A1zs=20Hajgat=C3=B3?= Date: Thu, 11 Dec 2014 16:08:23 +0100 Subject: [PATCH 0195/1217] Python dependency added for GObject-Introspection --- .../GObject-Introspection-1.42.0-intel-2014b.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb index bb74f6f055..7513c0030f 100644 --- a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb +++ b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb @@ -14,6 +14,7 @@ source_urls = ['http://ftp.gnome.org/pub/gnome/sources/%(namelower)s/%(version_m sources = [SOURCELOWER_TAR_XZ] dependencies = [ + ('Python', '2.7.8'), ('GLib', '2.40.0'), ('Bison', '3.0.2'), ] -- GitLab From 5b9fe63969e0e408b0a565bb501ab826f7f1a455 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Thu, 11 Dec 2014 17:06:10 +0100 Subject: [PATCH 0196/1217] added gtest --- .../g/gtest/gtest-1.6.0-intel-2014b.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/g/gtest/gtest-1.6.0-intel-2014b.eb diff --git a/easybuild/easyconfigs/g/gtest/gtest-1.6.0-intel-2014b.eb b/easybuild/easyconfigs/g/gtest/gtest-1.6.0-intel-2014b.eb new file mode 100644 index 0000000000..7e01fd3fc1 --- /dev/null +++ b/easybuild/easyconfigs/g/gtest/gtest-1.6.0-intel-2014b.eb @@ -0,0 +1,24 @@ +easyblock = "MakeCp" + +name = 'gtest' +version = '1.6.0' + +homepage = 'https://code.google.com/p/googletest/' +description = "Google's framework for writing C++ tests on a variety of platforms" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCE_ZIP] +source_urls = ['https://googletest.googlecode.com/files'] + +with_configure = True + + +files_to_copy = ['lib', 'include'] + +sanity_check_paths={ + 'files': ['lib/libgtest.la', 'lib/libgtest_main.la'], + 'dirs': ['include'], +} + +moduleclass = 'devel' -- GitLab From 8d966228f9b2dc92110e3eda00f06c65cc40f35b Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Thu, 11 Dec 2014 17:33:49 +0100 Subject: [PATCH 0197/1217] Initial easyconfigs for new gpsolf toolchain --- .../f/FFTW/FFTW-3.3.4-gpsmpi-2014.12.eb | 34 +++++++++++++ .../easyconfigs/g/gpsmpi/gpsmpi-2014.12.eb | 28 +++++++++++ .../easyconfigs/g/gpsolf/gpsolf-2014.12.eb | 36 +++++++++++++ .../h/HPL/HPL-2.1-gpsolf-2014.12.eb | 16 ++++++ .../OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb | 50 +++++++++++++++++++ .../easyconfigs/p/popt/popt-1.16-GCC-4.9.2.eb | 24 +++++++++ .../p/pscom/pscom-5.0.44-1-GCC-4.9.2.eb | 19 +++++++ .../p/psmpi/psmpi-5.1.0-1-GCC-4.9.2.eb | 41 +++++++++++++++ ...pi-2014.12-OpenBLAS-0.2.12-LAPACK-3.5.0.eb | 30 +++++++++++ 9 files changed, 278 insertions(+) create mode 100644 easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gpsmpi-2014.12.eb create mode 100644 easybuild/easyconfigs/g/gpsmpi/gpsmpi-2014.12.eb create mode 100644 easybuild/easyconfigs/g/gpsolf/gpsolf-2014.12.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-gpsolf-2014.12.eb create mode 100644 easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb create mode 100644 easybuild/easyconfigs/p/popt/popt-1.16-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gpsmpi-2014.12-OpenBLAS-0.2.12-LAPACK-3.5.0.eb diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gpsmpi-2014.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gpsmpi-2014.12.eb new file mode 100644 index 0000000000..702c146a6a --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gpsmpi-2014.12.eb @@ -0,0 +1,34 @@ +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" +toolchain = {'name': 'gpsmpi', 'version': '2014.12'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-openmp --with-pic" + +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-quad-precision", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + + + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s.a' % x for x in ['', '_mpi', '_omp', 'f', 'f_mpi', 'f_omp', + 'l', 'l_mpi', 'l_omp', 'q', 'q_omp']], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' + diff --git a/easybuild/easyconfigs/g/gpsmpi/gpsmpi-2014.12.eb b/easybuild/easyconfigs/g/gpsmpi/gpsmpi-2014.12.eb new file mode 100644 index 0000000000..a65b441539 --- /dev/null +++ b/easybuild/easyconfigs/g/gpsmpi/gpsmpi-2014.12.eb @@ -0,0 +1,28 @@ +easyblock = "Toolchain" + +name = 'gpsmpi' +version = '2014.12' + + +homepage = '(none)' +description = """gcc and GFortran based compiler toolchain, + including Parastation MPICH2 for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +mpilib = 'psmpi' +mpiver = '5.1.0-1' + + +compname = 'GCC' +compver = '4.9.2' + +comp = (compname, compver) + +dependencies = [ + comp, + (mpilib, mpiver, '', comp ), +] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/g/gpsolf/gpsolf-2014.12.eb b/easybuild/easyconfigs/g/gpsolf/gpsolf-2014.12.eb new file mode 100644 index 0000000000..5eacc9a99c --- /dev/null +++ b/easybuild/easyconfigs/g/gpsolf/gpsolf-2014.12.eb @@ -0,0 +1,36 @@ +easyblock = "Toolchain" + +name = 'gpsolf' +version = '2014.12' + +homepage = '(none)' +description = """gcc and GFortran based compiler toolchain, + ParaStation MPICH variant for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp_name = 'GCC' +comp_version = '4.9.2' +comp = (comp_name, comp_version) + +blaslib = 'OpenBLAS' +blasver = '0.2.12' +blas = '%s-%s' % (blaslib, blasver) +blassuff = '-LAPACK-3.5.0' + +# toolchain used to build dependencies +comp_mpi_tc_name = 'gpsmpi' +comp_mpi_tc_ver = version +comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) + +# compiler toolchain dependencies +dependencies = [ + comp, + ('psmpi', '5.1.0-1', '', comp), # part of gpsmpi2 toolchain + (blaslib, blasver, blassuff, comp), + ('FFTW', '3.3.4', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), +] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-gpsolf-2014.12.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-gpsolf-2014.12.eb new file mode 100644 index 0000000000..5e3c46df7b --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-gpsolf-2014.12.eb @@ -0,0 +1,16 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic +on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the +High Performance Computing Linpack Benchmark.""" +toolchain = {'name': 'gpsolf', 'version': '2014.12'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb new file mode 100644 index 0000000000..9444634267 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb @@ -0,0 +1,50 @@ +name = 'OpenBLAS' +version = '0.2.12' + +lapackver = '3.5.0' +versionsuffix = '-LAPACK-%s' % lapackver + +homepage = 'http://xianyi.github.com/OpenBLAS/' +description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +lapack_src = 'lapack-%s.tgz' % lapackver +large_src = 'large.tgz' +timing_src = 'timing.tgz' +sources = [ + 'v%(version)s.tar.gz', + lapack_src, + large_src, + timing_src, +] +source_urls = [ + # order matters, trying to download the LAPACK tarball from GitHub causes trouble + "http://www.netlib.org/lapack/", + "http://www.netlib.org/lapack/timing/", + "https://github.com/xianyi/OpenBLAS/archive/", +] + +patches = [ + (lapack_src, '.'), # copy LAPACK tarball to unpacked OpenBLAS dir + (large_src, '.'), + (timing_src, '.'), +] + +skipsteps = ['configure'] + +buildopts = 'BINARY=64 USE_THREAD=1 CC="$CC" FC="$F77" NO_AFFINITY=1' +installopts = "USE_THREAD=1 PREFIX=%(installdir)s" + +# extensive testing can be enabled by uncommenting the line below +#runtest = 'PATH=.:$PATH lapack-timing' + +sanity_check_paths = { + 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', + 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', + 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'dirs': [], +} + +moduleclass = 'numlib' + diff --git a/easybuild/easyconfigs/p/popt/popt-1.16-GCC-4.9.2.eb b/easybuild/easyconfigs/p/popt/popt-1.16-GCC-4.9.2.eb new file mode 100644 index 0000000000..9e73b46a1f --- /dev/null +++ b/easybuild/easyconfigs/p/popt/popt-1.16-GCC-4.9.2.eb @@ -0,0 +1,24 @@ +name = 'popt' +version = "1.16" + +homepage = "http://freecode.com/projects/popt" +description = """Popt is a C library for parsing command line parameters.""" +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = ['http://rpm5.org/files/popt/'] +sources = [SOURCE_TAR_GZ] + +#see if this fixes the assembly language fauilure + +toolchainopts = {'optarch': False} +sanity_check_paths = { + 'files': ['include/popt.h', + ('lib/libpopt.a', 'lib64/libpopt.a'), + ('lib/libpopt.so', 'lib64/libpopt.so')], + 'dirs': [], +} + +maxparallel = 1 + +moduleclass = 'lib' + diff --git a/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-GCC-4.9.2.eb b/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-GCC-4.9.2.eb new file mode 100644 index 0000000000..7cab517cdf --- /dev/null +++ b/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-GCC-4.9.2.eb @@ -0,0 +1,19 @@ +name = 'pscom' +version = '5.0.44-1' +homepage = 'http://www.par-tec.com' +description = """ParaStation is a robust and efficient cluster middleware, consisting of a high-performance communication layer (MPI) and a sophisticated management layer.""" +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = ['https://github.com/ParaStation/%(name)s/archive/'] +sources = ['%(version)s.zip'] + +dependencies = [('popt', '1.16')] + + +sanity_check_paths = { + 'files': ['include/pscom.h', ('lib/libpscom.so', 'lib64/libpscom.so')], + 'dirs': [], +} + +moduleclass = 'lib' + diff --git a/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-GCC-4.9.2.eb b/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-GCC-4.9.2.eb new file mode 100644 index 0000000000..cca03fc8d3 --- /dev/null +++ b/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-GCC-4.9.2.eb @@ -0,0 +1,41 @@ +name = 'psmpi' +version = '5.1.0-1' + +homepage = 'https://github.com/ParaStation/psmpi2' +description = """ParaStation MPI as part of the ParaStationV5 cluster suite provides robust, flexible and scalable communication and management functions for Linux-based compute clusters. Beside parallel applications based on the Message Passing Interface specification, version 2 (MPI2), also serial applications are supported.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = ['%(version)s.tar.gz', + 'openpa-1.0.4.tar.gz'] +source_urls = ['https://github.com/ParaStation/psmpi2/archive/' + ,'https://trac.mpich.org/projects/openpa/raw-attachment/wiki/Downloads/'] + +# MPICH configure wants F90/F90FLAGS to be renamed to FC/FCFLAGS. +preconfigopts = 'export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset F90FLAGS; ' + +# Build shared libraries +configopts = '--with-confset=gcc --enable-shared --enable-static' + +dependencies = [('pscom' , '5.0.44-1')] + + + + +sanity_check_paths = { + 'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', + 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', + ('lib/libfmpich.a', 'lib64/libfmpich.a'), + ('lib/libfmpich.so', 'lib64/libfmpich.so'), + ('lib/libmpich.a', 'lib64/libmpich.a'), + ('lib/libmpich.so', 'lib64/libmpich.so'), + ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), + ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), + ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), + ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], + 'dirs': [], +} + + +moduleclass = 'mpi' + diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gpsmpi-2014.12-OpenBLAS-0.2.12-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gpsmpi-2014.12-OpenBLAS-0.2.12-LAPACK-3.5.0.eb new file mode 100644 index 0000000000..ac55389f2d --- /dev/null +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gpsmpi-2014.12-OpenBLAS-0.2.12-LAPACK-3.5.0.eb @@ -0,0 +1,30 @@ +name = 'ScaLAPACK' +version = '2.0.2' + +homepage = 'http://www.netlib.org/scalapack/' +description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines +redesigned for distributed memory MIMD parallel computers.""" +toolchain = {'name': 'gpsmpi', 'version': '2014.12'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = ['%(namelower)s-%(version)s.tgz'] + +comp_name = 'GCC' +comp_version = '4.9.2' +comp = (comp_name, comp_version) + + +blaslib = 'OpenBLAS' +blasver = '0.2.12' +blassuff = '-LAPACK-3.5.0' + +versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) + +dependencies = [(blaslib, blasver, blassuff, comp)] + +## parallel build tends to fail, so disabling it +parallel = 1 + +moduleclass = 'numlib' + -- GitLab From 50aa93c0f080c9c33b817ed4b4ab29a2372d9336 Mon Sep 17 00:00:00 2001 From: Alan O'Cais Date: Thu, 11 Dec 2014 17:41:38 +0100 Subject: [PATCH 0198/1217] Initial easyconfigs for intel-para toolchain --- .../h/HPL/HPL-2.1-intel-para-2014.12.eb | 18 +++++++++ .../i/imkl/imkl-11.2.1.133-ipsmpi-2014.12.eb | 22 +++++++++++ .../i/intel-para/intel-para-2014.12.eb | 28 +++++++++++++ .../easyconfigs/i/ipsmpi/ipsmpi-2014.12.eb | 27 +++++++++++++ .../p/popt/popt-1.14-iccifort-2015.1.133.eb | 20 ++++++++++ .../pscom-5.0.44-1-iccifort-2015.1.133.eb | 18 +++++++++ .../psmpi-5.1.0-1-iccifort-2015.1.133.eb | 39 +++++++++++++++++++ 7 files changed, 172 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-intel-para-2014.12.eb create mode 100644 easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-ipsmpi-2014.12.eb create mode 100644 easybuild/easyconfigs/i/intel-para/intel-para-2014.12.eb create mode 100644 easybuild/easyconfigs/i/ipsmpi/ipsmpi-2014.12.eb create mode 100644 easybuild/easyconfigs/p/popt/popt-1.14-iccifort-2015.1.133.eb create mode 100644 easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-iccifort-2015.1.133.eb create mode 100644 easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-iccifort-2015.1.133.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-para-2014.12.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-para-2014.12.eb new file mode 100644 index 0000000000..b56af425fe --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-para-2014.12.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" +toolchain = {'name': 'intel-para', 'version': '2014.12'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' + diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-ipsmpi-2014.12.eb b/easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-ipsmpi-2014.12.eb new file mode 100644 index 0000000000..a44565b87f --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-ipsmpi-2014.12.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = "11.2.1.133" + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" +toolchain = {'name': 'ipsmpi', 'version': '2014.12'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +interfaces = True + +moduleclass = 'numlib' + diff --git a/easybuild/easyconfigs/i/intel-para/intel-para-2014.12.eb b/easybuild/easyconfigs/i/intel-para/intel-para-2014.12.eb new file mode 100644 index 0000000000..071bb1cdbb --- /dev/null +++ b/easybuild/easyconfigs/i/intel-para/intel-para-2014.12.eb @@ -0,0 +1,28 @@ +easyblock = "Toolchain" + +name = 'intel-para' +version = '2014.12' + + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, ParaStation MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '1.133' +compver = '2015.%s' % suff + +mpilib = 'psmpi' +mpiver = '5.1.0-1' + + +dependencies = [ + ('icc', compver), + ('ifort', compver), + (mpilib, mpiver, '', ('iccifort', compver)), + ('imkl', '11.2.1.133', '', ('ipsmpi', version)), +] + + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/i/ipsmpi/ipsmpi-2014.12.eb b/easybuild/easyconfigs/i/ipsmpi/ipsmpi-2014.12.eb new file mode 100644 index 0000000000..4a33e11b3a --- /dev/null +++ b/easybuild/easyconfigs/i/ipsmpi/ipsmpi-2014.12.eb @@ -0,0 +1,27 @@ +easyblock = "Toolchain" + +name = 'ipsmpi' +version = '2014.12' + + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL combined with ParaStation MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '1.133' +compver = '2015.%s' % suff + +mpilib = 'psmpi' +mpiver = '5.1.0-1' + + +dependencies = [ + ('iccifort', compver), + ('icc', compver), + ('ifort', compver), + (mpilib, mpiver, '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/p/popt/popt-1.14-iccifort-2015.1.133.eb b/easybuild/easyconfigs/p/popt/popt-1.14-iccifort-2015.1.133.eb new file mode 100644 index 0000000000..ca688fee64 --- /dev/null +++ b/easybuild/easyconfigs/p/popt/popt-1.14-iccifort-2015.1.133.eb @@ -0,0 +1,20 @@ +name = 'popt' +version = '1.14' + +homepage = "http://freecode.com/projects/popt" +description = """Popt is a C library for parsing command line parameters.""" +toolchain = {'name': 'iccifort', 'version': '2015.1.133'} + + +source_urls = ['http://rpm5.org/files/popt/'] +sources = [SOURCE_TAR_GZ] + +sanity_check_paths = { + 'files': ['include/popt.h', + ('lib/libpopt.a', 'lib64/libpopt.a'), + ('lib/libpopt.so', 'lib64/libpopt.so')], + 'dirs': [], +} + +moduleclass = 'tools' + diff --git a/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-iccifort-2015.1.133.eb b/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-iccifort-2015.1.133.eb new file mode 100644 index 0000000000..7acf1a6c0f --- /dev/null +++ b/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-iccifort-2015.1.133.eb @@ -0,0 +1,18 @@ +name = 'pscom' +version = '5.0.44-1' +homepage = 'http://www.par-tec.com' +description = """ParaStation is a robust and efficient cluster middleware, consisting of a high-performance communication layer (MPI) and a sophisticated management layer.""" +toolchain = {'name': 'iccifort', 'version': '2015.1.133'} + + +source_urls = ['https://github.com/ParaStation/%(name)s/archive/'] +sources = ['%(version)s.zip'] + +dependencies = [('popt', '1.14')] + +sanity_check_paths = { + 'files': ['include/pscom.h', ('lib/libpscom.so', 'lib64/libpscom.so')], + 'dirs': [], +} +moduleclass = 'tools' + diff --git a/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-iccifort-2015.1.133.eb b/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-iccifort-2015.1.133.eb new file mode 100644 index 0000000000..41929f3e0f --- /dev/null +++ b/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-iccifort-2015.1.133.eb @@ -0,0 +1,39 @@ +name = 'psmpi' + +version = '5.1.0-1' + +homepage = 'https://github.com/ParaStation/psmpi2' +description = """ParaStation MPI as part of the ParaStationV5 cluster suite provides robust, flexible and scalable communication and management functions for Linux-based compute clusters. Beside parallel applications based on the Message Passing Interface specification, version 2 (MPI2), also serial applications are supported.""" + +toolchain = {'name': 'iccifort', 'version': '2015.1.133'} + +sources = ['%(version)s.tar.gz', + 'openpa-1.0.4.tar.gz'] +source_urls = ['https://github.com/ParaStation/psmpi2/archive/' + ,'https://trac.mpich.org/projects/openpa/attachment/wiki/Downloads'] + +# MPICH configure wants F90/F90FLAGS to be renamed to FC/FCFLAGS. +preconfigopts = 'export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset F90FLAGS; ' + +# Build shared libraries +configopts = '--with-confset=intel --enable-shared --enable-static --enable-romio --enable-mpe' + +dependencies = [('pscom' , '5.0.44-1')] + + +sanity_check_paths = { + 'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', + 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', + ('lib/libfmpich.a', 'lib64/libfmpich.a'), + ('lib/libfmpich.so', 'lib64/libfmpich.so'), + ('lib/libmpich.a', 'lib64/libmpich.a'), + ('lib/libmpich.so', 'lib64/libmpich.so'), + ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), + ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), + ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), + ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], + 'dirs': [], +} + +moduleclass = 'mpi' + -- GitLab From 300097be7f1b4a28ae494180c41b45066c238a74 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 11 Dec 2014 20:06:44 +0100 Subject: [PATCH 0199/1217] add missing easyconfigs for icc, ifort, iccifort 2015.1.133 --- easybuild/easyconfigs/i/icc/icc-2015.1.133.eb | 17 +++++++++++++++++ .../i/iccifort/iccifort-2015.1.133.eb | 16 ++++++++++++++++ .../easyconfigs/i/ifort/ifort-2015.1.133.eb | 17 +++++++++++++++++ 3 files changed, 50 insertions(+) create mode 100644 easybuild/easyconfigs/i/icc/icc-2015.1.133.eb create mode 100644 easybuild/easyconfigs/i/iccifort/iccifort-2015.1.133.eb create mode 100644 easybuild/easyconfigs/i/ifort/ifort-2015.1.133.eb diff --git a/easybuild/easyconfigs/i/icc/icc-2015.1.133.eb b/easybuild/easyconfigs/i/icc/icc-2015.1.133.eb new file mode 100644 index 0000000000..08a6748331 --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2015.1.133.eb @@ -0,0 +1,17 @@ +name = 'icc' +version = '2015.1.133' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_ccompxe_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2015.1.133.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2015.1.133.eb new file mode 100644 index 0000000000..cb21cd2b6c --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2015.1.133.eb @@ -0,0 +1,16 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2015.1.133' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and Intel MKL""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.1.133.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.1.133.eb new file mode 100644 index 0000000000..02137b7498 --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.1.133.eb @@ -0,0 +1,17 @@ +name = 'ifort' +version = '2015.1.133' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_fcompxe_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' -- GitLab From b07efc04d6a5835350e0e941104b82405ac8ec5a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 12 Dec 2014 10:03:39 +0100 Subject: [PATCH 0200/1217] add check for deprecated automagic fallback to ConfigureMake --- test/easyconfigs/easyconfigs.py | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index 9b4608ac19..c0e5e46e8e 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -41,6 +41,7 @@ from unittest import TestCase, TestLoader, main import easybuild.main as main import easybuild.tools.options as eboptions +from easybuild.easyblocks.generic.configuremake import ConfigureMake from easybuild.framework.easyblock import EasyBlock from easybuild.framework.easyconfig.easyconfig import ActiveMNS, EasyConfig, fetch_parameter_from_easyconfig_file from easybuild.framework.easyconfig.easyconfig import get_easyblock_class @@ -197,7 +198,7 @@ class EasyConfigTest(TestCase): self.assertTrue(False, "List of easyconfig files in %s is empty: %s" % (dirpath, filenames)) def template_easyconfig_test(self, spec): - """Test whether all easyconfigs can be initialized.""" + """Tests for an individual easyconfig: parsing, instantiating easyblock, check patches, ...""" # set to False, so it's False in case of this test failing global single_tests_ok @@ -220,6 +221,11 @@ def template_easyconfig_test(self, spec): # instantiate easyblock with easyconfig file app_class = get_easyblock_class(easyblock, name=name) + + # check that automagic fallback to ConfigureMake isn't done (deprecated behaviour) + tup = (spec, easyblock, app_class) + self.assertTrue(easyblock or not app_class is ConfigureMake, "no fallback to ConfigureMake: %s" % str(tup)) + app = app_class(ec) # more sanity checks -- GitLab From 360cd689dd695d977004e4a81f2a4b94c3a94cd3 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 12 Dec 2014 11:35:28 +0100 Subject: [PATCH 0201/1217] style fixes in ctffind v140609 easyconfigs --- .../c/ctffind/ctffind-140609-foss-2014b.eb | 14 +++++--------- .../c/ctffind/ctffind-140609-intel-2014b.eb | 14 +++++--------- 2 files changed, 10 insertions(+), 18 deletions(-) diff --git a/easybuild/easyconfigs/c/ctffind/ctffind-140609-foss-2014b.eb b/easybuild/easyconfigs/c/ctffind/ctffind-140609-foss-2014b.eb index 86b24eee82..287e08b07e 100644 --- a/easybuild/easyconfigs/c/ctffind/ctffind-140609-foss-2014b.eb +++ b/easybuild/easyconfigs/c/ctffind/ctffind-140609-foss-2014b.eb @@ -1,27 +1,23 @@ -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'ctffind' version = '140609' homepage = 'http://grigoriefflab.janelia.org/ctf' -description = """CTFFIND3 and CTFTILT are two programs for finding CTFs of electron micrographs [1]. The program CTFFIND3 - is an updated version of the program CTFFIND2, which was developed in 1998 by Nikolaus Grigorieff at the MRC Laboratory - of Molecular Biology in Cambridge, UK with financial support from the MRC. This software is licensed under the terms of - the GNU Public License version 3 (GPLv3). -""" +description = """CTFFIND and CTFTILT are two programs for finding CTFs of electron micrographs.""" toolchain = {'name': 'foss', 'version': '2014b'} source_urls = ['http://grigoriefflab.janelia.org/sites/default/files/'] sources = ['ctf_%(version)s.tar.gz'] +buildopts = '-f Makefile_linux_mp' -makeopts = '-f Makefile_linux_mp' files_to_copy = [(["ctftilt_mp.exe", 'ctffind3_mp.exe'], "bin"), "README.txt"] sanity_check_paths = { - 'files': ["bin/ctftilt_mp.exe", 'bin/ctftilt_mp.exe'], + 'files': ["bin/ctftilt_mp.exe", 'bin/ctffind3_mp.exe'], 'dirs': [], } -moduleclass = '' +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/ctffind/ctffind-140609-intel-2014b.eb b/easybuild/easyconfigs/c/ctffind/ctffind-140609-intel-2014b.eb index ef17a37297..eab354f3cc 100644 --- a/easybuild/easyconfigs/c/ctffind/ctffind-140609-intel-2014b.eb +++ b/easybuild/easyconfigs/c/ctffind/ctffind-140609-intel-2014b.eb @@ -1,27 +1,23 @@ -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'ctffind' version = '140609' homepage = 'http://grigoriefflab.janelia.org/ctf' -description = """CTFFIND3 and CTFTILT are two programs for finding CTFs of electron micrographs [1]. The program CTFFIND3 - is an updated version of the program CTFFIND2, which was developed in 1998 by Nikolaus Grigorieff at the MRC Laboratory - of Molecular Biology in Cambridge, UK with financial support from the MRC. This software is licensed under the terms of - the GNU Public License version 3 (GPLv3). -""" +description = """CTFFIND and CTFTILT are two programs for finding CTFs of electron micrographs.""" toolchain = {'name': 'intel', 'version': '2014b'} source_urls = ['http://grigoriefflab.janelia.org/sites/default/files/'] sources = ['ctf_%(version)s.tar.gz'] +buildopts = '-f Makefile_linux_mp' -makeopts = '-f Makefile_linux_mp' files_to_copy = [(["ctftilt_mp.exe", 'ctffind3_mp.exe'], "bin"), "README.txt"] sanity_check_paths = { - 'files': ["bin/ctftilt_mp.exe", 'bin/ctftilt_mp.exe'], + 'files': ["bin/ctftilt_mp.exe", 'bin/ctffind3_mp.exe'], 'dirs': [], } -moduleclass = '' +moduleclass = 'bio' -- GitLab From 25106e8e786a3b0eed0f75a2173c8aa11d9ee676 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 12 Dec 2014 13:36:16 +0100 Subject: [PATCH 0202/1217] add easyconfig for ctffind v4.0.8 with intel/2014b --- .../c/ctffind/ctffind-4.0.8-intel-2014b.eb | 30 +++++++++++++++++++ .../c/ctffind/ctffind-4.0.8_nostd_value.patch | 20 +++++++++++++ 2 files changed, 50 insertions(+) create mode 100644 easybuild/easyconfigs/c/ctffind/ctffind-4.0.8-intel-2014b.eb create mode 100644 easybuild/easyconfigs/c/ctffind/ctffind-4.0.8_nostd_value.patch diff --git a/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8-intel-2014b.eb b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8-intel-2014b.eb new file mode 100644 index 0000000000..1218221900 --- /dev/null +++ b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8-intel-2014b.eb @@ -0,0 +1,30 @@ +easyblock='MakeCp' + +name = 'ctffind' +version = '4.0.8' + +homepage = 'http://grigoriefflab.janelia.org/ctf' +description = """CTFFIND and CTFTILT are two programs for finding CTFs of electron micrographs.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://grigoriefflab.janelia.org/system/files/private/'] +sources = [SOURCE_TAR_GZ] + +patches = ['cctffind-%(version)s_nostd_value.patch'] + +dependencies = [('GSL', '1.16')] + +with_configure = True +configopts = 'FC="$F77"' + +parallel = 1 + +files_to_copy = [(['ctffind'], "bin")] + +sanity_check_paths = { + 'files': ['bin/ctffind'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8_nostd_value.patch b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8_nostd_value.patch new file mode 100644 index 0000000000..5c29826586 --- /dev/null +++ b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8_nostd_value.patch @@ -0,0 +1,20 @@ +--- ctffind-4.0.8/Makefile.in.orig 2014-12-12 12:08:28.159297567 +0100 ++++ ctffind-4.0.8/Makefile.in 2014-12-12 12:08:44.935297601 +0100 +@@ -353,7 +353,7 @@ + @FC_IS_INTEL_TRUE@AM_FCFLAGS = -fpp -assume realloc_lhs -traceback \ + @FC_IS_INTEL_TRUE@ -heap-arrays -warn all -warn \ + @FC_IS_INTEL_TRUE@ notruncated_source -gen-interfaces -fpe0 \ +-@FC_IS_INTEL_TRUE@ -standard-semantics -assume nostd_value \ ++@FC_IS_INTEL_TRUE@ -standard-semantics \ + @FC_IS_INTEL_TRUE@ -init=snan $(am__append_27) $(am__append_30) \ + @FC_IS_INTEL_TRUE@ $(am__append_32) $(am__append_35) \ + @FC_IS_INTEL_TRUE@ $(am__append_37) +@@ -391,7 +391,7 @@ + @FC_IS_INTEL_TRUE@AM_FFLAGS = -assume realloc_lhs -traceback \ + @FC_IS_INTEL_TRUE@ -heap-arrays -warn all -warn \ + @FC_IS_INTEL_TRUE@ notruncated_source -gen-interfaces -fpe0 \ +-@FC_IS_INTEL_TRUE@ -standard-semantics -assume nostd_value \ ++@FC_IS_INTEL_TRUE@ -standard-semantics \ + @FC_IS_INTEL_TRUE@ -init=snan $(am__append_28) $(am__append_31) \ + @FC_IS_INTEL_TRUE@ $(am__append_33) $(am__append_34) \ + @FC_IS_INTEL_TRUE@ $(am__append_38) -- GitLab From 7048cc2f7e35373599494bbd3a2a79a805d387df Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 12 Dec 2014 13:52:05 +0100 Subject: [PATCH 0203/1217] fix typo in patch filename --- easybuild/easyconfigs/c/ctffind/ctffind-4.0.8-intel-2014b.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8-intel-2014b.eb b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8-intel-2014b.eb index 1218221900..70b9a6c76d 100644 --- a/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8-intel-2014b.eb +++ b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8-intel-2014b.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'intel', 'version': '2014b'} source_urls = ['http://grigoriefflab.janelia.org/system/files/private/'] sources = [SOURCE_TAR_GZ] -patches = ['cctffind-%(version)s_nostd_value.patch'] +patches = ['ctffind-%(version)s_nostd_value.patch'] dependencies = [('GSL', '1.16')] -- GitLab From c9f814b512580775e7e92b494c422592842c8b32 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 12 Dec 2014 14:07:31 +0100 Subject: [PATCH 0204/1217] add easyblock = 'ConfigureMake' to easyconfigs where it's missing --- .../a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb | 2 ++ .../a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb | 2 ++ .../easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb | 2 ++ .../easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb | 2 ++ .../a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb | 2 ++ .../easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb | 2 ++ easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.2.eb | 2 ++ .../easyconfigs/a/Autoconf/Autoconf-2.69-gcccuda-2.6.10.eb | 2 ++ .../easyconfigs/a/Autoconf/Autoconf-2.69-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.5.0.eb | 2 ++ .../easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb | 2 ++ .../easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb | 2 ++ .../easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb | 2 ++ easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb | 2 ++ .../easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb | 2 ++ .../easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb | 2 ++ .../easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb | 2 ++ .../easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb | 2 ++ .../easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb | 2 ++ .../easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb | 2 ++ .../easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb | 2 ++ .../easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb | 2 ++ .../easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb | 2 ++ .../b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb | 2 ++ easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb | 2 ++ .../b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb | 2 ++ easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/b/Bash/Bash-4.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/b/Bash/Bash-4.2-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.5-gmacml-1.7.0.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.5-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.5-iqacml-3.7.3.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.1.3.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.2.3.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.2.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.3.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.8.1.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.5.14.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.7-iqacml-3.7.3.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.7.1-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-2.7.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-3.0.2-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-3.0.2-ictce-7.1.2.eb | 2 ++ easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2014b.eb | 2 ++ .../b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb | 2 ++ .../easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb | 2 ++ .../b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/b/bc/bc-1.06-GCC-4.8.2.eb | 2 ++ .../b/beagle-lib/beagle-lib-20120124-goalf-1.1.0-no-OFED.eb | 2 ++ .../b/beagle-lib/beagle-lib-20120124-goolf-1.4.10.eb | 2 ++ .../easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-4.0.6.eb | 2 ++ .../easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-5.3.0.eb | 2 ++ .../easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb | 2 ++ .../b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb | 2 ++ easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb | 2 ++ easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb | 2 ++ .../easyconfigs/b/byacc/byacc-20120526-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/b/byacc/byacc-20120526-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/c/CCfits/CCfits-2.4-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/c/CDO/CDO-1.6.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/CDO/CDO-1.6.2-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.5.0.eb | 2 ++ .../easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/c/CLooG/CLooG-0.18.1-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-gmpolf-1.4.8.eb | 2 ++ .../easyconfigs/c/CMake/CMake-2.8.10.2-goalf-1.1.0-no-OFED.eb | 2 ++ .../easyconfigs/c/CMake/CMake-2.8.10.2-gompi-1.4.12-no-OFED.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-goolf-1.5.14.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.2.0.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.11-GCC-4.8.1.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.11-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.11-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.12-GCC-4.8.1.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.12-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmpolf-1.4.8.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmvolf-1.7.12.eb | 2 ++ .../easyconfigs/c/CMake/CMake-2.8.12-goalf-1.1.0-no-OFED.eb | 2 ++ .../easyconfigs/c/CMake/CMake-2.8.12-goalf-1.5.12-no-OFED.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolfc-2.6.10.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-6.2.5.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-7.1.2.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.12-intel-2014b.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.2.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.3.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.4-gmpolf-1.4.8.eb | 2 ++ .../easyconfigs/c/CMake/CMake-2.8.4-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-1.3.12.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-2.6.10.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.2.0.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-3.0.0-GCC-4.8.3.eb | 2 ++ easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2014b.eb | 2 ++ easybuild/easyconfigs/c/CRF++/CRF++-0.57-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/c/CRF++/CRF++-0.57-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb | 2 ++ .../c/Clustal-Omega/Clustal-Omega-1.2.0-goolf-1.4.10.eb | 2 ++ .../c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb | 2 ++ .../easyconfigs/c/Coreutils/Coreutils-8.22-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/Coreutils/Coreutils-8.22-ictce-5.3.0.eb | 2 ++ .../c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/c/Cube/Cube-3.4.3-gompi-1.4.12-no-OFED.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.27.0-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.27.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.28.1-iqacml-3.7.3.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmpolf-1.1.6.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.1.12rc1.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.2.7.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgoolf-1.1.7.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12rc1.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.29.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.33.0-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.33.0-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.34.0-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.34.0-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2014b.eb | 2 ++ .../easyconfigs/c/cairo/cairo-1.12.14-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/c/cairo/cairo-1.12.14-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-4.1.13.eb | 2 ++ .../easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb | 2 ++ .../easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3-bare.eb | 2 ++ easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3.eb | 2 ++ .../e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2-no-Java.eb | 2 ++ easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2.eb | 2 ++ .../e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb | 2 ++ easybuild/easyconfigs/e/ed/ed-1.9-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/e/ed/ed-1.9-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/e/expat/expat-2.1.0-cgmpolf-1.1.6.eb | 2 ++ easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.1.12rc1.eb | 2 ++ easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.2.7.eb | 2 ++ easybuild/easyconfigs/e/expat/expat-2.1.0-cgoolf-1.1.7.eb | 2 ++ easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2014b.eb | 2 ++ easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12.eb | 2 ++ easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12rc1.eb | 2 ++ .../easyconfigs/e/expat/expat-2.1.0-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/e/expat/expat-2.1.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb | 2 ++ .../FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb | 2 ++ .../f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb | 2 ++ .../f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb | 2 ++ .../f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb | 2 ++ .../f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-GCC-4.6.3.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-gompi-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmpich-1.1.6.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.1.12rc1.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.2.7.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgompi-1.1.7.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich2-1.4.8.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10-no-OFED.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.12.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14-no-OFED.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb | 2 ++ easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb | 2 ++ easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb | 2 ++ easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb | 2 ++ .../easyconfigs/f/FRC_align/FRC_align-20130521-goolf-1.4.10.eb | 2 ++ .../easyconfigs/f/FRC_align/FRC_align-20130521-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/f/file/file-5.17-GCC-4.8.2.eb | 2 ++ .../easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb | 2 ++ .../easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb | 2 ++ .../easyconfigs/f/fixesproto/fixesproto-5.0-goolf-1.4.10.eb | 2 ++ .../easyconfigs/f/fixesproto/fixesproto-5.0-ictce-4.1.13.eb | 2 ++ .../easyconfigs/f/fixesproto/fixesproto-5.0-ictce-5.3.0.eb | 2 ++ .../f/fontconfig/fontconfig-2.10.91-goalf-1.1.0-no-OFED.eb | 2 ++ .../easyconfigs/f/fontconfig/fontconfig-2.10.91-goolf-1.4.10.eb | 2 ++ .../f/fontconfig/fontconfig-2.10.91-ictce-3.2.2.u3.eb | 2 ++ .../easyconfigs/f/fontconfig/fontconfig-2.10.91-ictce-4.1.13.eb | 2 ++ .../easyconfigs/f/fontconfig/fontconfig-2.11.1-foss-2014b.eb | 2 ++ .../easyconfigs/f/fontconfig/fontconfig-2.11.1-ictce-5.5.0.eb | 2 ++ .../easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb | 2 ++ easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-iqacml-3.7.3.eb | 2 ++ easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb | 2 ++ easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb | 2 ++ easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb | 2 ++ easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb | 2 ++ easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb | 2 ++ easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb | 2 ++ easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/GDB/GDB-7.8-intel-2014b.eb | 2 ++ easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.2.0.eb | 2 ++ easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/GLPK/GLPK-4.53-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/GLPK/GLPK-4.53-ictce-6.2.5.eb | 2 ++ easybuild/easyconfigs/g/GLib/GLib-2.34.3-gmpolf-1.4.8.eb | 2 ++ easybuild/easyconfigs/g/GLib/GLib-2.34.3-gmpolf-1.5.14.eb | 2 ++ easybuild/easyconfigs/g/GLib/GLib-2.34.3-goalf-1.1.0-no-OFED.eb | 2 ++ .../easyconfigs/g/GLib/GLib-2.34.3-gompi-1.4.12-no-OFED.eb | 2 ++ easybuild/easyconfigs/g/GLib/GLib-2.34.3-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.2.0.eb | 2 ++ easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/g/GMP/GMP-4.3.2.eb | 2 ++ easybuild/easyconfigs/g/GMP/GMP-5.0.5-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/g/GMP/GMP-5.0.5-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/GMP/GMP-5.1.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.2.0.eb | 2 ++ easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-6.2.5.eb | 2 ++ easybuild/easyconfigs/g/GMP/GMP-5.1.3-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/g/GMP/GMP-5.1.3-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/GMP/GMP-5.1.3-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/GMP/GMP-5.1.3-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/g/GSL/GSL-1.15-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/g/GSL/GSL-1.15-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/GSL/GSL-1.15-intel-2014b.eb | 2 ++ easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-1.3.12.eb | 2 ++ easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-2.6.10.eb | 2 ++ easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-6.2.5.eb | 2 ++ easybuild/easyconfigs/g/GSL/GSL-1.16-intel-2014b.eb | 2 ++ .../easyconfigs/g/Ghostscript/Ghostscript-9.10-goolf-1.4.10.eb | 2 ++ .../easyconfigs/g/Ghostscript/Ghostscript-9.10-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmpolf-1.1.6.eb | 2 ++ .../easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.1.12rc1.eb | 2 ++ easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.2.7.eb | 2 ++ easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgoolf-1.1.7.eb | 2 ++ easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmpolf-1.4.8.eb | 2 ++ easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12.eb | 2 ++ .../easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12rc1.eb | 2 ++ .../easyconfigs/g/gettext/gettext-0.18.2-goalf-1.1.0-no-OFED.eb | 2 ++ .../g/gettext/gettext-0.18.2-gompi-1.4.12-no-OFED.eb | 2 ++ easybuild/easyconfigs/g/gettext/gettext-0.18.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/gettext/gettext-0.18.2-goolf-1.5.14.eb | 2 ++ easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.2.0.eb | 2 ++ easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb | 2 ++ easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb | 2 ++ easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb | 2 ++ easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb | 2 ++ easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb | 2 ++ easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb | 2 ++ easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb | 2 ++ .../easyconfigs/g/glproto/glproto-1.4.16-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/g/glproto/glproto-1.4.16-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.5.0.eb | 2 ++ .../easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb | 2 ++ .../easyconfigs/g/gnutls/gnutls-3.1.8-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goolf-1.4.10.eb | 2 ++ .../google-sparsehash-2.0.2-goalf-1.1.0-no-OFED.eb | 2 ++ .../g/google-sparsehash/google-sparsehash-2.0.2-goolf-1.4.10.eb | 2 ++ .../g/google-sparsehash/google-sparsehash-2.0.2-ictce-4.0.6.eb | 2 ++ .../g/google-sparsehash/google-sparsehash-2.0.2-ictce-5.3.0.eb | 2 ++ .../easyconfigs/g/gperf/gperf-3.0.4-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/g/gperf/gperf-3.0.4-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-5.3.0.eb | 2 ++ .../easyconfigs/g/gperftools/gperftools-2.1-goolf-1.4.10.eb | 2 ++ .../easyconfigs/g/gperftools/gperftools-2.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/grace/grace-5.1.23-intel-2014b.eb | 2 ++ easybuild/easyconfigs/g/grep/grep-2.15-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/grep/grep-2.15-ictce-5.3.0.eb | 2 ++ .../easyconfigs/g/grib_api/grib_api-1.10.0-goolf-1.4.10.eb | 2 ++ .../easyconfigs/g/grib_api/grib_api-1.10.0-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-ictce-5.3.0.eb | 2 ++ .../g/grib_api/grib_api-1.9.18-goalf-1.1.0-no-OFED.eb | 2 ++ .../easyconfigs/g/grib_api/grib_api-1.9.18-goolf-1.4.10.eb | 2 ++ .../easyconfigs/g/grib_api/grib_api-1.9.18-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-5.3.0.eb | 2 ++ .../easyconfigs/g/guile/guile-1.8.8-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/g/guile/guile-1.8.8-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/gzip/gzip-1.5-cgoolf-1.1.7.eb | 2 ++ easybuild/easyconfigs/g/gzip/gzip-1.5-gmpolf-1.4.8.eb | 2 ++ easybuild/easyconfigs/g/gzip/gzip-1.5-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/g/gzip/gzip-1.5-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.4.10-no-OFED.eb | 2 ++ easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14-no-OFED.eb | 2 ++ easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14.eb | 2 ++ easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.6.10.eb | 2 ++ easybuild/easyconfigs/g/gzip/gzip-1.6-goolfc-1.4.10.eb | 2 ++ easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-6.2.5.eb | 2 ++ easybuild/easyconfigs/g/gzip/gzip-1.6-iomkl-6.6.2.eb | 2 ++ .../easyconfigs/h/HDF/HDF-4.2.7-patch1-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/h/HDF/HDF-4.2.8-iqacml-3.7.3.eb | 2 ++ .../h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb | 2 ++ .../easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb | 2 ++ .../easyconfigs/h/Harminv/Harminv-1.3.1-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-5.3.0.eb | 2 ++ .../easyconfigs/h/h5utils/h5utils-1.12.1-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-GCC-4.6.3.eb | 2 ++ easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/h/hwloc/hwloc-1.6-iccifort-2011.13.367.eb | 2 ++ easybuild/easyconfigs/h/hwloc/hwloc-1.6-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ClangGCC-1.1.3.eb | 2 ++ easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.6.4.eb | 2 ++ easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.7.2.eb | 2 ++ easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/h/hwloc/hwloc-1.8-gcccuda-2.6.10.eb | 2 ++ easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.2.eb | 2 ++ .../easyconfigs/h/hwloc/hwloc-1.8.1-iccifort-2013_sp1.2.144.eb | 2 ++ easybuild/easyconfigs/h/hwloc/hwloc-1.9-GCC-4.8.3.eb | 2 ++ .../i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb | 2 ++ .../easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb | 2 ++ .../easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/i/imake/imake-1.0.5-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/i/inputproto/inputproto-2.3-foss-2014b.eb | 2 ++ .../easyconfigs/i/inputproto/inputproto-2.3-goolf-1.4.10.eb | 2 ++ .../easyconfigs/i/inputproto/inputproto-2.3-ictce-4.1.13.eb | 2 ++ .../easyconfigs/i/inputproto/inputproto-2.3-ictce-5.3.0.eb | 2 ++ .../easyconfigs/i/inputproto/inputproto-2.3-intel-2014b.eb | 2 ++ easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb | 2 ++ easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb | 2 ++ easybuild/easyconfigs/j/Jansson/Jansson-2.5-gcccuda-2.6.10.eb | 2 ++ easybuild/easyconfigs/j/Jansson/Jansson-2.6-GCC-4.8.3.eb | 2 ++ .../easyconfigs/j/JasPer/JasPer-1.900.1-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.5.14.eb | 2 ++ easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-iqacml-3.7.3.eb | 2 ++ .../easyconfigs/j/Jellyfish/Jellyfish-2.1.3-goolf-1.4.10.eb | 2 ++ .../easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb | 2 ++ easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-foss-2014b.eb | 2 ++ easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2014b.eb | 2 ++ easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb | 2 ++ easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb | 2 ++ .../easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.7.2.eb | 2 ++ easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/l/Lmod/Lmod-5.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/Lmod/Lmod-5.2.5-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/l/Lmod/Lmod-5.3-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/l/Lmod/Lmod-5.4-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/l/Lmod/Lmod-5.4.2-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/l/Lmod/Lmod-5.5-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/l/Lmod/Lmod-5.5.1-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/l/Lmod/Lmod-5.6-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/l/Lmod/Lmod-5.7-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.7.2.eb | 2 ++ easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/l/less/less-458-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libICE/libICE-1.0.8-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libICE/libICE-1.0.8-intel-2014b.eb | 2 ++ easybuild/easyconfigs/l/libSM/libSM-1.2.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libSM/libSM-1.2.1-intel-2014b.eb | 2 ++ easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2014b.eb | 2 ++ .../l/libX11/libX11-1.6.2-foss-2014b-Python-2.7.8.eb | 2 ++ .../l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb | 2 ++ easybuild/easyconfigs/l/libXau/libXau-1.0.8-foss-2014b.eb | 2 ++ easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb | 2 ++ easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2014b.eb | 2 ++ .../l/libXext/libXext-1.3.2-foss-2014b-Python-2.7.8.eb | 2 ++ easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-5.3.0.eb | 2 ++ .../l/libXext/libXext-1.3.2-intel-2014-Python-2.7.8.eb | 2 ++ easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b.eb | 2 ++ .../easyconfigs/l/libXfixes/libXfixes-5.0.1-goolf-1.4.10.eb | 2 ++ .../easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-4.1.13.eb | 2 ++ .../easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libXft/libXft-2.3.2-foss-2014b.eb | 2 ++ easybuild/easyconfigs/l/libXft/libXft-2.3.2-intel-2014b.eb | 2 ++ easybuild/easyconfigs/l/libXi/libXi-1.7.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-5.3.0.eb | 2 ++ .../easyconfigs/l/libXinerama/libXinerama-1.1.3-foss-2014b.eb | 2 ++ .../easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2014b.eb | 2 ++ easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-5.3.0.eb | 2 ++ .../easyconfigs/l/libXrender/libXrender-0.9.8-foss-2014b.eb | 2 ++ .../easyconfigs/l/libXrender/libXrender-0.9.8-intel-2014b.eb | 2 ++ easybuild/easyconfigs/l/libXt/libXt-1.1.4-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2014b.eb | 2 ++ .../easyconfigs/l/libcircle/libcircle-0.20-rc.1-goolf-1.4.10.eb | 2 ++ .../easyconfigs/l/libcircle/libcircle-0.20-rc.1-ictce-5.3.0.eb | 2 ++ .../easyconfigs/l/libctl/libctl-3.2.1-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/libctl/libctl-3.2.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-5.3.0.eb | 2 ++ .../easyconfigs/l/libdrm/libdrm-2.4.27-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/l/libevent/libevent-2.0.21-intel-2014b.eb | 2 ++ easybuild/easyconfigs/l/libffi/libffi-3.0.11-gmpolf-1.4.8.eb | 2 ++ .../easyconfigs/l/libffi/libffi-3.0.11-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/libffi/libffi-3.0.11-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libffi/libffi-3.0.11-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/l/libffi/libffi-3.0.13-gmpolf-1.4.8.eb | 2 ++ .../easyconfigs/l/libffi/libffi-3.0.13-goalf-1.1.0-no-OFED.eb | 2 ++ .../easyconfigs/l/libffi/libffi-3.0.13-gompi-1.4.12-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/libffi/libffi-3.0.13-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libffi/libffi-3.0.13-goolf-1.5.14.eb | 2 ++ easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.2.0.eb | 2 ++ easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libgd/libgd-2.1.0-ictce-5.5.0.eb | 2 ++ .../l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb | 2 ++ .../l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb | 2 ++ .../l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb | 2 ++ .../l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.6.3.eb | 2 ++ easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.7.2.eb | 2 ++ easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.6.3.eb | 2 ++ easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.7.2.eb | 2 ++ .../easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.6.3.eb | 2 ++ .../easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.7.2.eb | 2 ++ .../easyconfigs/l/libidn/libidn-1.27-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/libidn/libidn-1.27-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libidn/libidn-1.27-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libidn/libidn-1.29-intel-2014b.eb | 2 ++ .../l/libjpeg-turbo/libjpeg-turbo-1.3.0-ictce-4.1.13.eb | 2 ++ .../l/libjpeg-turbo/libjpeg-turbo-1.3.0-intel-2014b.eb | 2 ++ .../l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-5.5.0.eb | 2 ++ .../l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.2.5.eb | 2 ++ .../l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.3.5.eb | 2 ++ .../l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014b.eb | 2 ++ .../l/libmatheval/libmatheval-1.1.8-goalf-1.1.0-no-OFED.eb | 2 ++ .../easyconfigs/l/libmatheval/libmatheval-1.1.8-goolf-1.4.10.eb | 2 ++ .../easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-4.0.6.eb | 2 ++ .../easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-5.3.0.eb | 2 ++ .../easyconfigs/l/libpciaccess/libpciaccess-0.13.1-GCC-4.7.2.eb | 2 ++ .../l/libpciaccess/libpciaccess-0.13.1-goalf-1.1.0-no-OFED.eb | 2 ++ .../l/libpciaccess/libpciaccess-0.13.1-goolf-1.4.10.eb | 2 ++ .../l/libpciaccess/libpciaccess-0.13.1-ictce-4.0.6.eb | 2 ++ .../l/libpciaccess/libpciaccess-0.13.1-ictce-4.1.13.eb | 2 ++ .../l/libpciaccess/libpciaccess-0.13.1-ictce-5.3.0.eb | 2 ++ .../l/libpciaccess/libpciaccess-0.13.1-ictce-5.5.0.eb | 2 ++ .../easyconfigs/l/libpng/libpng-1.5.10-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.10-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-5.3.0.eb | 2 ++ .../easyconfigs/l/libpng/libpng-1.5.11-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.11-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-5.3.0.eb | 2 ++ .../easyconfigs/l/libpng/libpng-1.5.13-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.13-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.10.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-5.3.0.eb | 2 ++ .../easyconfigs/l/libpng/libpng-1.5.14-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.14-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.5.14-iqacml-3.7.3.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.6.10-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.6.12-foss-2014b.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-6.2.5.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-6.3.5.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.6.12-intel-2014b.eb | 2 ++ .../easyconfigs/l/libpng/libpng-1.6.2-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.6.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-5.3.0.eb | 2 ++ .../l/libpng/libpng-1.6.3-ictce-4.1.13-zlib-1.2.8.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-4.1.13.eb | 2 ++ .../easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0-zlib-1.2.8.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.6.6-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/l/libpng/libpng-1.6.9-ictce-5.5.0.eb | 2 ++ .../l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb | 2 ++ .../libpthread-stubs-0.3-goalf-1.1.0-no-OFED.eb | 2 ++ .../l/libpthread-stubs/libpthread-stubs-0.3-goolf-1.4.10.eb | 2 ++ .../l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.0.6.eb | 2 ++ .../l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.1.13.eb | 2 ++ .../l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.3.0.eb | 2 ++ .../l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.5.0.eb | 2 ++ .../l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.2-cgmpolf-1.1.6.eb | 2 ++ .../l/libreadline/libreadline-6.2-cgmvolf-1.1.12rc1.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.2.7.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.2-cgoolf-1.1.7.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.2-gmpolf-1.4.8.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12.eb | 2 ++ .../l/libreadline/libreadline-6.2-gmvolf-1.7.12rc1.eb | 2 ++ .../l/libreadline/libreadline-6.2-goalf-1.1.0-no-OFED.eb | 2 ++ .../l/libreadline/libreadline-6.2-goalf-1.5.12-no-OFED.eb | 2 ++ .../l/libreadline/libreadline-6.2-gompi-1.4.12-no-OFED.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.2-goolf-1.4.10.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.2-goolf-1.5.14.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.10.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.6.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.2-ictce-4.1.13.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.2-ictce-5.2.0.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.2-ictce-5.3.0.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.2-ictce-5.5.0.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.2-iomkl-4.6.13.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.2-iqacml-3.7.3.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.2-iqacml-4.4.13.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.3-GCC-4.8.2.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.3-foss-2014b.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.3-ictce-6.2.5.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.3-ictce-6.3.5.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.3-ictce-7.1.2.eb | 2 ++ .../easyconfigs/l/libreadline/libreadline-6.3-intel-2014b.eb | 2 ++ easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.2.eb | 2 ++ .../easyconfigs/l/libtool/libtool-2.4.2-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/libtool/libtool-2.4.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2014b.eb | 2 ++ easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb | 2 ++ .../l/libunistring/libunistring-0.9.3-goalf-1.1.0-no-OFED.eb | 2 ++ .../l/libunistring/libunistring-0.9.3-goolf-1.4.10.eb | 2 ++ .../l/libunistring/libunistring-0.9.3-ictce-4.0.6.eb | 2 ++ .../l/libunistring/libunistring-0.9.3-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libunwind/libunwind-1.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libunwind/libunwind-1.1-ictce-5.3.0.eb | 2 ++ .../easyconfigs/l/libxc/libxc-2.0.1-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/libxc/libxc-2.0.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.5.0.eb | 2 ++ .../easyconfigs/l/libxc/libxc-2.0.2-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/libxc/libxc-2.0.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/libxc/libxc-2.2.0-intel-2014b.eb | 2 ++ .../easyconfigs/l/libxcb/libxcb-1.10-foss-2014b-Python-2.7.8.eb | 2 ++ .../l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb | 2 ++ .../l/libxcb/libxcb-1.8-goalf-1.1.0-no-OFED-Python-2.7.3.eb | 2 ++ .../l/libxcb/libxcb-1.8-goolf-1.4.10-Python-2.7.3.eb | 2 ++ .../easyconfigs/l/libxcb/libxcb-1.8-ictce-4.0.6-Python-2.7.3.eb | 2 ++ .../l/libxcb/libxcb-1.8-ictce-4.1.13-Python-2.7.3.eb | 2 ++ .../easyconfigs/l/libxcb/libxcb-1.8-ictce-5.3.0-Python-2.7.3.eb | 2 ++ .../easyconfigs/l/libxcb/libxcb-1.8-intel-2014b-Python-2.7.8.eb | 2 ++ .../easyconfigs/l/libxslt/libxslt-1.1.28-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-5.3.0.eb | 2 ++ .../easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb | 2 ++ .../l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED-pinomp.eb | 2 ++ .../easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED.eb | 2 ++ .../easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10-pinomp.eb | 2 ++ easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10.eb | 2 ++ .../easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13-pinomp.eb | 2 ++ easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13.eb | 2 ++ .../easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0-pinomp.eb | 2 ++ easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/l/lynx/lynx-2.8.7-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.1.3.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.2.3.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.6.3.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.2.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.3.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.1.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-gcccuda-2.6.10.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-gmacml-1.7.0.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.5.14.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-intel-2014b.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16-iqacml-3.7.3.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.16.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb | 2 ++ easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb | 2 ++ .../m/MAFFT/MAFFT-7.130-goolf-1.4.10-with-extensions.eb | 2 ++ easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/m/MPFR/MPFR-2.4.2.eb | 2 ++ easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/m/MPICH/MPICH-3.0.3-ClangGCC-1.1.3.eb | 2 ++ easybuild/easyconfigs/m/MPICH2/MPICH2-1.1-GCC-4.8.1.eb | 2 ++ easybuild/easyconfigs/m/MPICH2/MPICH2-3.0.4-GCC-4.8.1.eb | 2 ++ easybuild/easyconfigs/m/Meep/Meep-1.2-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/m/Meep/Meep-1.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-5.3.0.eb | 2 ++ .../m/Mesa/Mesa-7.11.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb | 2 ++ .../easyconfigs/m/Mesa/Mesa-7.11.2-goolf-1.4.10-Python-2.7.3.eb | 2 ++ .../easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.0.6-Python-2.7.3.eb | 2 ++ .../easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.1.13-Python-2.7.3.eb | 2 ++ .../easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.3.0-Python-2.7.3.eb | 2 ++ .../easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.5.0-Python-2.7.6.eb | 2 ++ easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb | 2 ++ .../m/makedepend/makedepend-1.0.4-goalf-1.1.0-no-OFED.eb | 2 ++ .../easyconfigs/m/makedepend/makedepend-1.0.4-goolf-1.4.10.eb | 2 ++ .../easyconfigs/m/makedepend/makedepend-1.0.4-ictce-3.2.2.u3.eb | 2 ++ .../easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.0.6.eb | 2 ++ .../easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.1.13.eb | 2 ++ .../easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.3.0.eb | 2 ++ .../easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.5.0.eb | 2 ++ .../easyconfigs/m/makedepend/makedepend-1.0.4-iqacml-3.7.3.eb | 2 ++ easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/m/mcpp/mcpp-2.7.2-GCC-4.7.2.eb | 2 ++ easybuild/easyconfigs/m/motif/motif-2.3.4-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/m/motif/motif-2.3.4-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2014b.eb | 2 ++ .../m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb | 2 ++ easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb | 2 ++ easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb | 2 ++ easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb | 2 ++ easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb | 2 ++ .../n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb | 2 ++ .../n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb | 2 ++ .../n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/n/ncview/ncview-2.1.2-ictce-4.1.13.eb | 2 ++ .../easyconfigs/n/netCDF-C++/netCDF-C++-4.2-goolf-1.4.10.eb | 2 ++ .../easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13-mt.eb | 2 ++ .../easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13.eb | 2 ++ .../easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-5.3.0.eb | 2 ++ .../easyconfigs/n/netCDF-C++/netCDF-C++-4.2-iqacml-3.7.3.eb | 2 ++ .../easyconfigs/n/netCDF-C++4/netCDF-C++4-4.2.1-intel-2014b.eb | 2 ++ easybuild/easyconfigs/n/netloc/netloc-0.5-GCC-4.8.3.eb | 2 ++ easybuild/easyconfigs/n/netloc/netloc-0.5-gcccuda-2.6.10.eb | 2 ++ .../easyconfigs/n/nettle/nettle-2.6-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/n/nettle/nettle-2.6-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/n/nodejs/nodejs-0.10.24-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/n/ns/ns-2.35-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/n/ns/ns-2.35-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/n/ns/ns-2.35-ictce-5.3.0.eb | 2 ++ .../easyconfigs/n/numactl/numactl-2.0.8-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.3.eb | 2 ++ easybuild/easyconfigs/o/O2scl/o2scl-0.913-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb | 2 ++ .../easyconfigs/o/OPARI2/OPARI2-1.0.7-gompi-1.4.12-no-OFED.eb | 2 ++ .../easyconfigs/o/OPARI2/OPARI2-1.1.1-gompi-1.4.12-no-OFED.eb | 2 ++ easybuild/easyconfigs/o/OTF/OTF-1.12.4-gompi-1.4.12-no-OFED.eb | 2 ++ easybuild/easyconfigs/o/OTF/OTF-1.12.4-ictce-5.3.0.eb | 2 ++ .../o/OpenBLAS/OpenBLAS-0.2.6-cgmpich-1.1.6-LAPACK-3.4.2.eb | 2 ++ .../OpenBLAS-0.2.6-cgmvapich2-1.1.12rc1-LAPACK-3.4.2.eb | 2 ++ .../o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.2.7-LAPACK-3.4.2.eb | 2 ++ .../o/OpenBLAS/OpenBLAS-0.2.6-cgompi-1.1.7-LAPACK-3.4.2.eb | 2 ++ .../o/OpenBLAS/OpenBLAS-0.2.6-gmpich2-1.4.8-LAPACK-3.4.2.eb | 2 ++ .../o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12-LAPACK-3.4.2.eb | 2 ++ .../OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12rc1-LAPACK-3.4.2.eb | 2 ++ .../o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.3.12-LAPACK-3.4.2.eb | 2 ++ .../o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-LAPACK-3.4.2.eb | 2 ++ .../OpenBLAS-0.2.6-gompi-1.4.10-no-OFED-LAPACK-3.4.2.eb | 2 ++ .../o/OpenBLAS/OpenBLAS-0.2.6-ictce-5.3.0-LAPACK-3.4.2.eb | 2 ++ .../o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-LAPACK-3.5.0.eb | 2 ++ .../OpenBLAS-0.2.8-gompi-1.5.14-no-OFED-LAPACK-3.5.0.eb | 2 ++ .../o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.6.10-LAPACK-3.4.2.eb | 2 ++ .../o/OpenBLAS/OpenBLAS-0.2.8-gompic-2.6.10-LAPACK-3.4.2.eb | 2 ++ .../o/OpenBLAS/OpenBLAS-0.2.8-ictce-5.3.0-LAPACK-3.4.2.eb | 2 ++ .../o/OpenBLAS/OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0.eb | 2 ++ .../easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3-no-OFED.eb | 2 ++ easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb | 2 ++ .../easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb | 2 ++ easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb | 2 ++ easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb | 2 ++ .../easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2-no-OFED.eb | 2 ++ easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb | 2 ++ easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb | 2 ++ .../easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb | 2 ++ .../easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb | 2 ++ easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb | 2 ++ .../easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2-no-OFED.eb | 2 ++ easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb | 2 ++ .../o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb | 2 ++ easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb | 2 ++ easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb | 2 ++ .../o/OpenPGM/OpenPGM-5.2.122-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/o/otcl/otcl-1.14-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/o/otcl/otcl-1.14-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/o/otcl/otcl-1.14-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb | 2 ++ easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/p/PCC/PCC-20131024.eb | 2 ++ easybuild/easyconfigs/p/PCRE/PCRE-8.12-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/p/PCRE/PCRE-8.12-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/p/PDT/PDT-3.19-gompi-1.4.12-no-OFED.eb | 2 ++ easybuild/easyconfigs/p/PDT/PDT-3.19-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/p/ParFlow/ParFlow-605-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/p/PhyML/PhyML-20120412-goolf-1.4.10.eb | 2 ++ .../easyconfigs/p/PhyML/PhyML-20131016-devel-goolf-1.4.10.eb | 2 ++ .../p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb | 2 ++ .../easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb | 2 ++ .../easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb | 2 ++ .../easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/p/patch/patch-2.7.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/p/patch/patch-2.7.1-ictce-5.3.0.eb | 2 ++ .../easyconfigs/p/pixman/pixman-0.28.2-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/p/pixman/pixman-0.28.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-5.3.0.eb | 2 ++ .../p/pkg-config/pkg-config-0.27.1-goalf-1.1.0-no-OFED.eb | 2 ++ .../easyconfigs/p/pkg-config/pkg-config-0.27.1-goolf-1.4.10.eb | 2 ++ .../easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-4.0.6.eb | 2 ++ .../easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.3.0.eb | 2 ++ .../easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-GCC-4.8.2.eb | 2 ++ .../easyconfigs/p/pkg-config/pkg-config-0.28-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/p/popt/popt-1.14-GCC-4.8.2.eb | 2 ++ .../easyconfigs/p/printproto/printproto-1.0.5-goolf-1.4.10.eb | 2 ++ .../easyconfigs/p/printproto/printproto-1.0.5-ictce-4.1.13.eb | 2 ++ .../easyconfigs/p/printproto/printproto-1.0.5-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/p/problog/problog-1.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/p/problog/problog-1.1-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/p/problog/problog-1.1-ictce-5.3.0.eb | 2 ++ .../easyconfigs/p/protobuf/protobuf-2.4.0a-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/p/protobuf/protobuf-2.5.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/p/pscom/pscom-5.0.43-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2-mt.eb | 2 ++ easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2.eb | 2 ++ .../easyconfigs/q/QuadProg++/QuadProg++-1.2.1-goolf-1.4.10.eb | 2 ++ .../easyconfigs/q/QuadProg++/QuadProg++-1.2.1-ictce-6.2.5.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-hybrid-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mpi-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mt-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-seq-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-hybrid-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mpi-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mt-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-seq-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-hybrid-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mpi-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mt-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-seq-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-hybrid-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mpi-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mt-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-seq-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-hybrid-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mpi-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mt-sse3.eb | 2 ++ .../easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-seq-sse3.eb | 2 ++ easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb | 2 ++ easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb | 2 ++ easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/r/Ruby/Ruby-2.1.0-goolf-1.4.10.eb | 2 ++ .../easyconfigs/r/renderproto/renderproto-0.11-foss-2014b.eb | 2 ++ .../easyconfigs/r/renderproto/renderproto-0.11-intel-2014b.eb | 2 ++ easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb | 2 ++ easybuild/easyconfigs/s/SDPA/SDPA-7.3.8-ictce-6.2.5.eb | 2 ++ easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb | 2 ++ .../easyconfigs/s/Sablotron/Sablotron-1.0.3-goolf-1.4.10.eb | 2 ++ .../easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-4.1.13.eb | 2 ++ .../easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/s/Silo/Silo-4.9.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/s/Silo/Silo-4.9.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/s/Stacks/Stacks-1.03-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb | 2 ++ easybuild/easyconfigs/s/Szip/Szip-2.1-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.14.eb | 2 ++ easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb | 2 ++ easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb | 2 ++ easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2014b.eb | 2 ++ easybuild/easyconfigs/s/Szip/Szip-2.1-iqacml-3.7.3.eb | 2 ++ easybuild/easyconfigs/s/sed/sed-4.2.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/s/sed/sed-4.2.2-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb | 2 ++ .../easyconfigs/t/TREE-PUZZLE/TREE-PUZZLE-5.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/t/Tar/Tar-1.26-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/t/Tar/Tar-1.26-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.3.5-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvapich2-1.7.12.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvolf-1.7.12.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolfc-1.3.12.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.10.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.5.16-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-intel-2014b.eb | 2 ++ .../t/TiCCutils/TiCCutils-0.3-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-5.3.0.eb | 2 ++ .../easyconfigs/t/TiMBL/TiMBL-6.4.3-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-5.3.0.eb | 2 ++ .../easyconfigs/t/TinySVM/TinySVM-0.09-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb | 2 ++ easybuild/easyconfigs/t/Tk/Tk-8.5.12-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/t/Tk/Tk-8.5.12-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.10.eb | 2 ++ easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb | 2 ++ easybuild/easyconfigs/t/Tk/Tk-8.5.15-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb | 2 ++ .../easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb | 2 ++ .../t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb | 2 ++ easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb | 2 ++ .../t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb | 2 ++ easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/t/tclcl/tclcl-1.20-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/t/tclcl/tclcl-1.20-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/t/tclcl/tclcl-1.20-ictce-5.3.0.eb | 2 ++ .../easyconfigs/t/tcsh/tcsh-6.18.01-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb | 2 ++ easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-iqacml-3.7.3.eb | 2 ++ easybuild/easyconfigs/t/texinfo/texinfo-5.2-GCC-4.8.2.eb | 2 ++ .../easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb | 2 ++ .../easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb | 2 ++ easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb | 2 ++ .../u/util-linux/util-linux-2.22.2-goalf-1.1.0-no-OFED.eb | 2 ++ .../easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb | 2 ++ .../easyconfigs/u/util-linux/util-linux-2.22.2-ictce-4.1.13.eb | 2 ++ .../easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb | 2 ++ .../easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb | 2 ++ .../easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb | 2 ++ .../easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb | 2 ++ .../easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb | 2 ++ .../easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb | 2 ++ .../easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb | 2 ++ .../easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb | 2 ++ easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb | 2 ++ .../easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb | 2 ++ .../easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb | 2 ++ .../v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb | 2 ++ .../v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb | 2 ++ .../v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb | 2 ++ .../easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb | 2 ++ .../easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb | 2 ++ .../easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb | 2 ++ .../easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/x/XZ/XZ-5.0.5-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/x/XZ/XZ-5.0.5-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/x/XZ/XZ-5.0.5-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2014b.eb | 2 ++ .../x/xcb-proto/xcb-proto-1.10-foss-2014b-Python-2.7.8.eb | 2 ++ .../x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb | 2 ++ .../xcb-proto/xcb-proto-1.7-goalf-1.1.0-no-OFED-Python-2.7.3.eb | 2 ++ .../x/xcb-proto/xcb-proto-1.7-goolf-1.4.10-Python-2.7.3.eb | 2 ++ .../x/xcb-proto/xcb-proto-1.7-ictce-4.0.6-Python-2.7.3.eb | 2 ++ .../x/xcb-proto/xcb-proto-1.7-ictce-4.1.13-Python-2.7.3.eb | 2 ++ .../x/xcb-proto/xcb-proto-1.7-ictce-5.3.0-Python-2.7.3.eb | 2 ++ .../x/xcb-proto/xcb-proto-1.7-intel-2014b-Python-2.7.8.eb | 2 ++ .../easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.4.10.eb | 2 ++ .../easyconfigs/x/xextproto/xextproto-7.2.1-ictce-4.1.13.eb | 2 ++ .../easyconfigs/x/xextproto/xextproto-7.2.1-ictce-5.3.0.eb | 2 ++ .../easyconfigs/x/xextproto/xextproto-7.2.1-intel-2014b.eb | 2 ++ easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb | 2 ++ .../easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb | 2 ++ .../x/xineramaproto/xineramaproto-1.2.1-foss-2014b.eb | 2 ++ .../x/xineramaproto/xineramaproto-1.2.1-intel-2014b.eb | 2 ++ .../easyconfigs/x/xorg-macros/xorg-macros-1.17-GCC-4.7.2.eb | 2 ++ .../x/xorg-macros/xorg-macros-1.17-goalf-1.1.0-no-OFED.eb | 2 ++ .../easyconfigs/x/xorg-macros/xorg-macros-1.17-goolf-1.4.10.eb | 2 ++ .../easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-4.0.6.eb | 2 ++ .../easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-4.1.13.eb | 2 ++ .../easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-5.3.0.eb | 2 ++ .../easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-5.5.0.eb | 2 ++ .../easyconfigs/x/xproto/xproto-7.0.23-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/x/xproto/xproto-7.0.23-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/x/xproto/xproto-7.0.26-foss-2014b.eb | 2 ++ easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2014b.eb | 2 ++ easybuild/easyconfigs/x/xtrans/xtrans-1.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/x/xtrans/xtrans-1.2.6-foss-2014b.eb | 2 ++ easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb | 2 ++ easybuild/easyconfigs/y/YAXT/YAXT-0.2.1-ictce-5.5.0.eb | 2 ++ .../easyconfigs/y/YamCha/YamCha-0.33-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/y/YamCha/YamCha-0.33-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb | 2 ++ .../easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.5.0.eb | 2 ++ .../easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.0.3-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.5-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.5-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-GCC-4.8.1.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmpolf-1.1.6.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.1.12rc1.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.2.7.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgoolf-1.1.7.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmpolf-1.4.8.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12rc1.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.5.12-no-OFED.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-gompi-1.4.12-no-OFED.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolf-1.5.14.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.10.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.2.0.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-intel-2014b.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-iomkl-4.6.13.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.8.2.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.8-goalf-1.5.12-no-OFED.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.2.5.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.3.5.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.1.2.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014b.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb | 2 ++ easybuild/easyconfigs/z/zsh/zsh-5.0.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-5.3.0.eb | 2 ++ .../easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb | 2 ++ 1291 files changed, 2582 insertions(+) diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 65a3a11a7f..570c4b562c 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ABySS' version = '1.3.4' versionsuffix = '-Python-2.7.3' diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb index 8fde0c7515..893dbac4ab 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ABySS' version = '1.3.4' versionsuffix = '-Python-2.7.3' diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb index c0037b80f0..47d31cf715 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ABySS' version = '1.3.4' versionsuffix = '-Python-2.7.3' diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb index 9c73ec2746..8ce4ee39f1 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ABySS' version = '1.3.4' versionsuffix = '-Python-2.7.3' diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb index fa5a164db6..418f170236 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ABySS' version = '1.3.6' versionsuffix = '-Python-2.7.5' diff --git a/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb b/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb index 11670bd9af..bde2863301 100644 --- a/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb @@ -7,6 +7,8 @@ # ## +easyblock = 'ConfigureMake' + name = 'ALLPATHS-LG' version = '46968' diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb index 12b4935563..7204bb4bed 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'AMOS' version = '3.1.0' diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb index 83680addb9..67f7c8c305 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'AMOS' version = '3.1.0' diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb index 837a417508..e18be68931 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'AMOS' version = '3.1.0' diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb index c041420948..89797ac535 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'AMOS' version = '3.1.0' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb index 39d449ebf4..3d86e53a57 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Autoconf' version = '2.69' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.2.eb index 231ec6e1b8..3a282506ef 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Autoconf' version = '2.69' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-gcccuda-2.6.10.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-gcccuda-2.6.10.eb index 3dbedef6bb..75e2f7a232 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-gcccuda-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Autoconf' version = '2.69' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goalf-1.1.0-no-OFED.eb index e0b581ce3d..f48592fa5b 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Autoconf' version = '2.69' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.4.10.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.4.10.eb index a25b326d59..1e344106ca 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Autoconf' version = '2.69' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.0.6.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.0.6.eb index 0a829a5bd2..f34ee586e2 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Autoconf' version = '2.69' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.1.13.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.1.13.eb index e304f4b331..3870d85a1f 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Autoconf' version = '2.69' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.3.0.eb index c9ccb7d911..83e9b83ada 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Autoconf' version = '2.69' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.5.0.eb index 8cc779b1ed..cf222c4c5e 100644 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Autoconf' version = '2.69' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb index 3728b1448b..11720186ff 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Automake' version = '1.13.4' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb index 16266b5e8c..df3ffc4bcb 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-4.1.13.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Automake' version = '1.13.4' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb index f52ca8892d..b9e7f68389 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Automake' version = '1.13.4' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb index b587eedafb..675782f77b 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb @@ -6,6 +6,8 @@ # ## +easyblock = 'ConfigureMake' + name = 'Automake' version = '1.13.4' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb index f4d6f1b95e..bec66dfd3d 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-GCC-4.8.2.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Automake' version = "1.14" diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb index 81e141a7ff..732b039251 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-gcccuda-2.6.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Automake' version = "1.14" diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb index 158caec498..2e5a33ea9b 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Automake' version = "1.14" diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb index bb0de01b16..1ef76d9727 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-ictce-5.5.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Automake' version = "1.14" diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb index b52689546f..3a06e84989 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14.1-GCC-4.8.2.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Automake' version = "1.14.1" diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb index ba6fb9fd5d..13ae69456f 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goalf-1.1.0-no-OFED.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'a2ps' version = '4.14' diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb index 419c3d406b..5144a9afc9 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-goolf-1.4.10.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'a2ps' version = '4.14' diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb index bcdee98674..3b963e0d7e 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-4.0.6.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'a2ps' version = '4.14' diff --git a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb index 80aabef50d..f6a35a3dc0 100644 --- a/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/a2ps/a2ps-4.14-ictce-5.3.0.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'a2ps' version = '4.14' diff --git a/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb b/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb index 9dae0dc5da..00d3a24d26 100644 --- a/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'argtable' version = '2.13' diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb index d68e916857..ebcf12ae1b 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'aria2' version = '1.15.1' diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb index a200957f55..cb532e1ea2 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'aria2' version = '1.15.1' diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb index ff2f43b0be..1e9c1ad980 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'aria2' version = '1.15.1' diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb index fd211d17de..3da57c79d8 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'aria2' version = '1.15.1' diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb index 4abff36b04..69351c2f0f 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'arpack-ng' version = '3.1.3' versionsuffix = '-mt' diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb index e562d6c9ba..9491e3183b 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'arpack-ng' version = '3.1.3' diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb index 575c77a9c3..e222e2fd03 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'arpack-ng' version = '3.1.3' versionsuffix = '-mt' diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb index 29f2124f98..feee7f7ba7 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'arpack-ng' version = '3.1.3' diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb index bbbddf6ef7..812915265c 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'arpack-ng' version = '3.1.5' versionsuffix = '-mt' diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb index 54fdda07da..879d20e656 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'arpack-ng' version = '3.1.5' diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb index 0cd9c5da7f..a3b2575da6 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BFAST' version = '0.7.0a' diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb index 6ce2b61689..372422bd73 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BFAST' version = '0.7.0a' diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb index 4a4b228f89..06a9cd2e7e 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BFAST' version = '0.7.0a' diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb index be3256242f..b792e697b2 100644 --- a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BFAST' version = '0.7.0a' diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb index 2380ce062b..f4b3245692 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BLAST' version = '2.2.27' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb index ec46a2d2c1..f1853407cc 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BLAST' version = '2.2.27' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb index 7855f085b3..5b8b658539 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BLAST' version = '2.2.27' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb index 457595c972..f16f3445c0 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BLAST' version = '2.2.28' versionsuffix = '-Python-2.7.3' diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb index d34beb73c9..d7a23abb92 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BLAST' version = '2.2.28' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb index c67a21575a..44ad40f2e4 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BLAST' version = '2.2.28' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb index 2549de3e8f..9ae9e7de68 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BLAST' version = '2.2.28' versionsuffix = '-Python-2.7.3' diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb index 2cdb466320..950edd8368 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BLAST' version = '2.2.28' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb index 8ffbecad50..b2a23aa149 100644 --- a/easybuild/easyconfigs/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'Bash' version = '4.2' diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bash/Bash-4.2-goolf-1.4.10.eb index d4a53daa14..7cf887ea82 100644 --- a/easybuild/easyconfigs/b/Bash/Bash-4.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bash/Bash-4.2-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'Bash' version = '4.2' diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.2-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bash/Bash-4.2-ictce-5.3.0.eb index 0863522494..b45858d56f 100644 --- a/easybuild/easyconfigs/b/Bash/Bash-4.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bash/Bash-4.2-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'Bash' version = '4.2' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb index 4422c069ef..ad34232c28 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-GCC-4.6.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-gmacml-1.7.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-gmacml-1.7.0.eb index 31520c710c..f48960ba9c 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-gmacml-1.7.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-gmacml-1.7.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-goalf-1.1.0-no-OFED.eb index f26bcc8110..a6612ed9d7 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb index aba6ec1fef..5c91aa97e5 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-3.2.2.u3.eb index 10fc9ef68a..c97b614281 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.0.6.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.0.6.eb index 1a58cb138e..31688560eb 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.1.13.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.1.13.eb index dd1af5cd2f..f799cc2a08 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb index 9c14def61f..3257ed4046 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb index 7afcb39317..37e75810f2 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb index d87f069c2c..5f58f02694 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-iqacml-3.7.3.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-iqacml-3.7.3.eb index 54db01d2ea..61c5b60ca1 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.5-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-4.1.13.eb b/easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-4.1.13.eb index 5954b4a580..c9f6762114 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.6.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-5.3.0.eb index cbdb121a82..a673f202fb 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.6.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.6.5' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.1.3.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.1.3.eb index 8744cbb56a..bb91556cec 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.1.3.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.1.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.2.3.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.2.3.eb index ec2d8ec231..0916b6237c 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.2.3.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-ClangGCC-1.2.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.2.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.2.eb index 585ea2ac96..1806f695f4 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.3.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.3.eb index e3ee605bb0..1e8f69087b 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.3.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.8.1.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.8.1.eb index f8873239d9..7f170a71a4 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.8.1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.4.10.eb index 8be6a9e305..aeaa2cf444 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.5.14.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.5.14.eb index e8122f2337..de2474fb3b 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.5.14.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-4.1.13.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-4.1.13.eb index 8043e00d5c..1345612aec 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.3.0.eb index a60a5f96e7..025c3d68aa 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.5.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.5.0.eb index 1c8ec7242c..03b08d09a6 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-iqacml-3.7.3.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-iqacml-3.7.3.eb index 9cbcbb84e1..b9514c8e33 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7.1-ictce-5.5.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7.1-ictce-5.5.0.eb index 83da9c3f17..be67b39a9a 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7.1-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7.1' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7.eb index e1f74e5158..137d2f967e 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '2.7' diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-GCC-4.8.2.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-GCC-4.8.2.eb index 91a644d72e..df304cae68 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '3.0.2' diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-ictce-7.1.2.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-ictce-7.1.2.eb index 7cb814d8ce..01778cb7cb 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-ictce-7.1.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '3.0.2' diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2014b.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2014b.eb index 2922ecc97c..675e098b5e 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2014b.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Bison' version = '3.0.2' diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb index aa7a118558..41a9f3fdef 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'Bonnie++' version = '1.03e' diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb index 6857999302..28f31121d6 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'Bonnie++' version = '1.03e' diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb index 28844c4cf5..7b2aca1bc7 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'Bonnie++' version = '1.03e' diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb index 0fbabef74c..80cfb940af 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'Bonnie++' version = '1.03e' diff --git a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb index 7052b846b6..523b1ad59c 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'bbFTP' version = '3.2.0' diff --git a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb index 692786b8d5..b3183258a9 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'bbFTP' version = '3.2.0' diff --git a/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb b/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb index e6bae6df17..cf3d332d4b 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbftpPRO-9.3.1-ictce-5.3.0.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'bbftpPRO' version = '9.3.1' diff --git a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb index 5d9f6f1163..7f34d18683 100644 --- a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'bbftpPRO' version = '9.3.1' diff --git a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb index 853e10b626..8017f38954 100644 --- a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'bbftpPRO' version = '9.3.1' diff --git a/easybuild/easyconfigs/b/bc/bc-1.06-GCC-4.8.2.eb b/easybuild/easyconfigs/b/bc/bc-1.06-GCC-4.8.2.eb index 138875ebd4..d9c14913b3 100644 --- a/easybuild/easyconfigs/b/bc/bc-1.06-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/b/bc/bc-1.06-GCC-4.8.2.eb @@ -3,6 +3,8 @@ # ## +easyblock = 'ConfigureMake' + name = 'bc' version = '1.06.95' diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goalf-1.1.0-no-OFED.eb index a957f3428f..8cc9ec017e 100644 --- a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'beagle-lib' version = '20120124' diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goolf-1.4.10.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goolf-1.4.10.eb index 073b6bae5c..6ce8bc4c64 100644 --- a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'beagle-lib' version = '20120124' diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-4.0.6.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-4.0.6.eb index de5d0fcdf9..1a9b8e86f1 100644 --- a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'beagle-lib' version = '20120124' diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-5.3.0.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-5.3.0.eb index e1bcb81951..971aefa649 100644 --- a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'beagle-lib' version = '20120124' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb index b8f55dde81..6d0b4d9315 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'binutils' version = '2.22' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb index 761b9d3999..129afa50d1 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'binutils' version = '2.22' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb index 73b0a393f0..98ff0c9aef 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'binutils' version = '2.22' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb b/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb index 04b0fb3cde..7e0429c8a1 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'binutils' version = '2.24' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb b/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb index 0cba712669..35ffa05491 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'binutils' version = '2.24' diff --git a/easybuild/easyconfigs/b/byacc/byacc-20120526-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/byacc/byacc-20120526-goalf-1.1.0-no-OFED.eb index 3e399ef780..42ae4e574e 100644 --- a/easybuild/easyconfigs/b/byacc/byacc-20120526-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/byacc/byacc-20120526-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'byacc' version = '20120526' diff --git a/easybuild/easyconfigs/b/byacc/byacc-20120526-goolf-1.4.10.eb b/easybuild/easyconfigs/b/byacc/byacc-20120526-goolf-1.4.10.eb index 8b8782fe4b..f53938591a 100644 --- a/easybuild/easyconfigs/b/byacc/byacc-20120526-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/byacc/byacc-20120526-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'byacc' version = '20120526' diff --git a/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-4.0.6.eb b/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-4.0.6.eb index 9b30eede50..b2e4ab6e24 100644 --- a/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'byacc' version = '20120526' diff --git a/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-5.3.0.eb b/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-5.3.0.eb index 3f0c68f0c2..39def10fe5 100644 --- a/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'byacc' version = '20120526' diff --git a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-goolf-1.4.10.eb index 68eb09eb8e..d575fbe895 100644 --- a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CCfits' version = '2.4' diff --git a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-4.1.13.eb b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-4.1.13.eb index ff0f7d035c..3375f207b2 100644 --- a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CCfits' version = '2.4' diff --git a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-5.3.0.eb index 51afa00583..a344cd2ac0 100644 --- a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CCfits' version = '2.4' diff --git a/easybuild/easyconfigs/c/CDO/CDO-1.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CDO/CDO-1.6.0-goolf-1.4.10.eb index 0362af4aee..cdb73d31ab 100644 --- a/easybuild/easyconfigs/c/CDO/CDO-1.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CDO/CDO-1.6.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CDO' version = '1.6.0' diff --git a/easybuild/easyconfigs/c/CDO/CDO-1.6.2-ictce-5.5.0.eb b/easybuild/easyconfigs/c/CDO/CDO-1.6.2-ictce-5.5.0.eb index ab55c8a89d..39193c4070 100644 --- a/easybuild/easyconfigs/c/CDO/CDO-1.6.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/c/CDO/CDO-1.6.2-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CDO' version = '1.6.2' diff --git a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-goolf-1.4.10.eb index 68327a6464..3373480b9b 100644 --- a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CFITSIO' version = '3.34' diff --git a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-4.1.13.eb b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-4.1.13.eb index b951700ab8..7086648457 100644 --- a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CFITSIO' version = '3.34' diff --git a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.3.0.eb index 28289da109..bbd4471f37 100644 --- a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CFITSIO' version = '3.34' diff --git a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.5.0.eb b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.5.0.eb index cc90dfb457..acdf7bfb8d 100644 --- a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CFITSIO' version = '3.34' diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goalf-1.1.0-no-OFED.eb index 8a5facff39..d48a6dc1a5 100644 --- a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CLHEP' version = '2.1.1.0' diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goolf-1.4.10.eb index f9f4f41e38..44f5feeb1c 100644 --- a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CLHEP' version = '2.1.1.0' diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb index 3585a1adbe..61c66a1cb8 100644 --- a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CLHEP' version = '2.1.1.0' diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb index b61ee5dfbe..d1dda5abc6 100644 --- a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CLHEP' version = '2.1.1.0' diff --git a/easybuild/easyconfigs/c/CLooG/CLooG-0.18.1-GCC-4.8.2.eb b/easybuild/easyconfigs/c/CLooG/CLooG-0.18.1-GCC-4.8.2.eb index 8dce651ef0..3ca4fbb07d 100644 --- a/easybuild/easyconfigs/c/CLooG/CLooG-0.18.1-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/CLooG/CLooG-0.18.1-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CLooG' version = '0.18.1' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-gmpolf-1.4.8.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-gmpolf-1.4.8.eb index 6a82a35581..bde9381ad4 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.10.2" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-goalf-1.1.0-no-OFED.eb index 35d6963aa8..c2acbcfc6f 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.10.2" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-gompi-1.4.12-no-OFED.eb index c259bae35b..1a8e9fd163 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-gompi-1.4.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.10.2" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-goolf-1.5.14.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-goolf-1.5.14.eb index 6b5755b2ce..feb561d760 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-goolf-1.5.14.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.10.2" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.0.6.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.0.6.eb index e754b86304..15403aa7dc 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.10.2" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.1.13.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.1.13.eb index f6b734a958..1b047ba2a1 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.10.2" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.2.0.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.2.0.eb index 377de1135e..fecbbb8212 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.10.2" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.3.0.eb index 46545e5ed3..0981e4bfde 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.10.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.10.2" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.11-GCC-4.8.1.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.11-GCC-4.8.1.eb index b76602bb5c..b89cf43cdf 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.11-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.11-GCC-4.8.1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.11' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.11-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.11-goolf-1.4.10.eb index 3b3474d82a..52b7ad5a1d 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.11-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.11-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.11" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.11-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.11-ictce-5.3.0.eb index 44aa40baa3..6d95f92530 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.11-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.11-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.11' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-GCC-4.8.1.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-GCC-4.8.1.eb index 4dba02eaaa..2285dba43b 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-GCC-4.8.1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-GCC-4.8.2.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-GCC-4.8.2.eb index 3cd64959f9..eb8e6111a5 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmpolf-1.4.8.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmpolf-1.4.8.eb index 29decbc378..eccd7c5a7c 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmvolf-1.7.12.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmvolf-1.7.12.eb index 4e80c3b739..c66410954a 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-gmvolf-1.7.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goalf-1.1.0-no-OFED.eb index 4371f8b627..4fc53c9dad 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goalf-1.5.12-no-OFED.eb index d7c1932718..b38ad052b6 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goalf-1.5.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = "2.8.12" diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolf-1.4.10.eb index 0eb9ee7abd..ea127d1f6f 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolfc-2.6.10.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolfc-2.6.10.eb index 3b0a2eaf8c..12cd6a2816 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolfc-2.6.10.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-goolfc-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-4.1.13.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-4.1.13.eb index 126afc1210..079f244318 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.3.0.eb index 99d7f8a098..add2700489 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.5.0.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.5.0.eb index f8ec2041f7..65989c3d41 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-6.2.5.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-6.2.5.eb index 8c1af3a9eb..3478f86d65 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-6.2.5.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-7.1.2.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-7.1.2.eb index c030eea20f..48bd837709 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-7.1.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-intel-2014b.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-intel-2014b.eb index c10fcbe95f..7749fdcd02 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-intel-2014b.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.12' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.2.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.2.eb index deb5350db8..a1685498a1 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.3.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.3.eb index 018b92f54b..40dd8432c2 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.3.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-GCC-4.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-gmpolf-1.4.8.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-gmpolf-1.4.8.eb index bb61485bd7..42a5e84ae6 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goalf-1.1.0-no-OFED.eb index 5d13e3197e..46a1400329 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolf-1.4.10.eb index 4757d18e2b..b3ef140ae5 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-1.3.12.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-1.3.12.eb index 5eaf5017a3..4cc60ce88e 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-1.3.12.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-1.3.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-2.6.10.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-2.6.10.eb index 42fa53cb42..e9c1cecb61 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-2.6.10.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-goolfc-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.0.6.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.0.6.eb index a4cd6c3566..c191adadb8 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.1.13.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.1.13.eb index a05a4231d2..f36475bd2f 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.2.0.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.2.0.eb index f3a4fc743f..4357a674cf 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.3.0.eb index 308c056375..3fcf409cda 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '2.8.4' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.0.0-GCC-4.8.3.eb b/easybuild/easyconfigs/c/CMake/CMake-3.0.0-GCC-4.8.3.eb index 113f020e74..a55f084411 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-3.0.0-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-3.0.0-GCC-4.8.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '3.0.0' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2014b.eb b/easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2014b.eb index df116fd81a..fa4cdee8bf 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2014b.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '3.0.0' diff --git a/easybuild/easyconfigs/c/CRF++/CRF++-0.57-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/CRF++/CRF++-0.57-goalf-1.1.0-no-OFED.eb index 828800110e..0c5d3788c2 100644 --- a/easybuild/easyconfigs/c/CRF++/CRF++-0.57-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/CRF++/CRF++-0.57-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CRF++' version = '0.57' diff --git a/easybuild/easyconfigs/c/CRF++/CRF++-0.57-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CRF++/CRF++-0.57-goolf-1.4.10.eb index fa81455738..2f6ee874d9 100644 --- a/easybuild/easyconfigs/c/CRF++/CRF++-0.57-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CRF++/CRF++-0.57-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CRF++' version = '0.57' diff --git a/easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-4.1.13.eb b/easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-4.1.13.eb index d563104338..de3ab38782 100644 --- a/easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CRF++' version = '0.57' diff --git a/easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-5.3.0.eb index ba283055d3..e68b6b3fec 100644 --- a/easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CRF++/CRF++-0.57-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CRF++' version = '0.57' diff --git a/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb index 8c96ef1492..19a3bd716f 100644 --- a/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb @@ -3,6 +3,8 @@ # ## +easyblock = 'ConfigureMake' + name = 'CVS' version = '1.11.23' diff --git a/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-goolf-1.4.10.eb index ec43e8ac61..4286aeb066 100644 --- a/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'Clustal-Omega' version = '1.2.0' diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb index fae5d50567..141abe9b6a 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ClustalW2' version = '2.1' diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb index 4c9844ec1e..0c4dba86a6 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ClustalW2' version = '2.1' diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb index c594cb1b4d..93dc9500bd 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ClustalW2' version = '2.1' diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb index 38db616f9c..381ad621a9 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ClustalW2' version = '2.1' diff --git a/easybuild/easyconfigs/c/Coreutils/Coreutils-8.22-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Coreutils/Coreutils-8.22-goolf-1.4.10.eb index bd182d78c1..cfe41742ae 100644 --- a/easybuild/easyconfigs/c/Coreutils/Coreutils-8.22-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Coreutils/Coreutils-8.22-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Coreutils" version = "8.22" diff --git a/easybuild/easyconfigs/c/Coreutils/Coreutils-8.22-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Coreutils/Coreutils-8.22-ictce-5.3.0.eb index 3eae868790..7e921a133c 100644 --- a/easybuild/easyconfigs/c/Coreutils/Coreutils-8.22-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/Coreutils/Coreutils-8.22-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Coreutils" version = "8.22" diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb index 0ac070befc..6a4d78599d 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'Corkscrew' version = '2.0' diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb index 7f7cc6e6ce..7810f1ee53 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'Corkscrew' version = '2.0' diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb index e83b3411cd..3d22de6dc8 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'Corkscrew' version = '2.0' diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb index 54e29f6336..5f4aa901ed 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'Corkscrew' version = '2.0' diff --git a/easybuild/easyconfigs/c/Cube/Cube-3.4.3-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/c/Cube/Cube-3.4.3-gompi-1.4.12-no-OFED.eb index 71977159d4..b1b5830754 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-3.4.3-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-3.4.3-gompi-1.4.12-no-OFED.eb @@ -6,6 +6,8 @@ # This work is based from experiences from the UNITE project # http://apps.fz-juelich.de/unite/ ## +easyblock = 'ConfigureMake' + name = "Cube" version = "3.4.3" diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goalf-1.1.0-no-OFED.eb index 16cb1b6076..d19a93b8f7 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.27.0' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goolf-1.4.10.eb index dacf81315a..308d2908fd 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.27.0' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-3.2.2.u3.eb index e3d7413bf6..08677ae0d0 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.27.0' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-4.1.13.eb b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-4.1.13.eb index ff715fa081..22ed00385f 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.27.0' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-5.3.0.eb index ed9eef919f..f0fe3d92ae 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.27.0' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-4.1.13.eb b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-4.1.13.eb index 9fc5e81fcb..aa170c9bf2 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.28.1' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-5.3.0.eb index 210e3f40a8..2cbb554712 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.28.1' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-iqacml-3.7.3.eb b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-iqacml-3.7.3.eb index db2eda6156..549dfa692a 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.28.1' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmpolf-1.1.6.eb index bf760e2c07..4d7a07a71f 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmpolf-1.1.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.29.0' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.1.12rc1.eb index 1356be3372..d9c35ea662 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.1.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.29.0' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.2.7.eb index d77c92be68..b5148412f3 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.2.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.29.0' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgoolf-1.1.7.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgoolf-1.1.7.eb index a3feaa959e..5062e4abe8 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgoolf-1.1.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.29.0' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12.eb index f8f7bb8c40..63311d7849 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.29.0' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12rc1.eb index 98feff239c..070c275709 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.29.0' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-goolf-1.4.10.eb index b968056133..cb387db31b 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.29.0' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.33.0-GCC-4.8.2.eb b/easybuild/easyconfigs/c/cURL/cURL-7.33.0-GCC-4.8.2.eb index 01ae4edc60..698a9cde21 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.33.0-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.33.0-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.33.0' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.33.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.33.0-ictce-5.3.0.eb index 66be7bfc47..ce886810a7 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.33.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.33.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.33.0' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.34.0-GCC-4.8.2.eb b/easybuild/easyconfigs/c/cURL/cURL-7.34.0-GCC-4.8.2.eb index 2a4acebd5d..34d5cc0514 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.34.0-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.34.0-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.34.0' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.34.0-ictce-5.5.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.34.0-ictce-5.5.0.eb index 0323837519..c2ed6dbc33 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.34.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.34.0-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.34.0' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2014b.eb b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2014b.eb index 1ba8aaf6e2..3b257ff22b 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2014b.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'cURL' version = '7.37.1' diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goalf-1.1.0-no-OFED.eb index 6264b44320..047ec7fc17 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "cairo" version = '1.12.14' diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goolf-1.4.10.eb index fe30ba2cfb..265076ce9c 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "cairo" version = '1.12.14' diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb index 768941a832..c0e4224f63 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "cairo" version = '1.12.14' diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-4.1.13.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-4.1.13.eb index c623937595..d6276c28d7 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.14-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "cairo" version = '1.12.14' diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb index 1226b6dc85..48fcc47836 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'ccache' version = '3.1.9' diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb index 916549091d..b642a5d551 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'ccache' version = '3.1.9' diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb index 33ddbf32f9..4137d5afc8 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'ccache' version = '3.1.9' diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb index 201e850c29..b15c9ceaf9 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'ccache' version = '3.1.9' diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb index 7c1f5bd4e4..315f43e190 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'cflow' version = '1.4' altversions = ['1.3', '1.4'] diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb index 55b343284e..501b5edd24 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'cflow' version = '1.4' altversions = ['1.3', '1.4'] diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb index 358ff1663d..7c2775cbce 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'cflow' version = '1.4' altversions = ['1.3', '1.4'] diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb index 82843f959b..848eb6e899 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'cflow' version = '1.4' altversions = ['1.3', '1.4'] diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb index 9da76bda63..5a1aea2fb7 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'cgdb' version = '0.6.5' diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb index dbaf94990d..5efc1c2d3c 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'cgdb' version = '0.6.5' diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb index 94c1e73484..b3656ba859 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'cgdb' version = '0.6.5' diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb index 3cabb8ebfb..c3ce823fd9 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'cgdb' version = '0.6.5' diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb index 10e4ce1725..cfed427bb7 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Diffutils' version = '3.2' diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb index 74b8d31778..9021d61ff6 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.2-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Diffutils' version = '3.2' diff --git a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb index 2934a37028..03dd2d88f6 100644 --- a/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/d/Diffutils/Diffutils-3.3-GCC-4.8.2.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'Diffutils' version = '3.3' diff --git a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb index d993b57afc..6294e11656 100644 --- a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb @@ -7,6 +7,8 @@ # ## +easyblock = 'ConfigureMake' + name = 'ELPA' version = '2013.11' diff --git a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb index 8912346112..c080908b42 100644 --- a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb @@ -7,6 +7,8 @@ # ## +easyblock = 'ConfigureMake' + name = 'ELPA' version = '2013.11' diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb index 84e02765e3..740d133cb4 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'ELinks' version = '0.12pre5' diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb index 3e05a2a056..098e55a84e 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'ELinks' version = '0.12pre5' diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb index 00c03edcad..3298a3a17d 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'ELinks' version = '0.12pre5' diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb index 9f0dccf385..1dbae1bd2f 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'ELinks' version = '0.12pre5' diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb index 81f5b4188f..de907a4a95 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # This work implements a part of the HPCBIOS project and is a component of the policy: # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +easyblock = 'ConfigureMake' + name = 'EMBOSS' version = '6.5.7' diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb index 325122ddce..d78f1f7be5 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb @@ -3,6 +3,8 @@ # This work implements a part of the HPCBIOS project and is a component of the policy: # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +easyblock = 'ConfigureMake' + name = 'EMBOSS' version = '6.5.7' diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb index b28209b1ca..21a40b02e9 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb @@ -3,6 +3,8 @@ # This work implements a part of the HPCBIOS project and is a component of the policy: # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +easyblock = 'ConfigureMake' + name = 'EMBOSS' version = '6.5.7' diff --git a/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3-bare.eb b/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3-bare.eb index e7ad0c96d4..68f945c239 100644 --- a/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3-bare.eb +++ b/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3-bare.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Emacs' version = '24.3' versionsuffix = '-bare' diff --git a/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3.eb b/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3.eb index 4e1dfd15cc..cb835bb8cd 100644 --- a/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Emacs' version = '24.3' diff --git a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2-no-Java.eb b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2-no-Java.eb index 84aa14f3cb..4e009be5c9 100644 --- a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2-no-Java.eb +++ b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2-no-Java.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ErlangOTP' version = 'R16B02' versionsuffix = "-no-Java" diff --git a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2.eb b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2.eb index 14f196cbec..9f3aa94ef1 100644 --- a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ErlangOTP' version = 'R16B02' diff --git a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb index f66616f2a8..1e6432cb6d 100644 --- a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb +++ b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-goolf-1.4.10-no-Java.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = "ErlangOTP" version = "R16B02" versionsuffix = "-no-Java" diff --git a/easybuild/easyconfigs/e/ed/ed-1.9-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ed/ed-1.9-goolf-1.4.10.eb index 6cb5d154df..361605cda9 100644 --- a/easybuild/easyconfigs/e/ed/ed-1.9-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ed/ed-1.9-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ed' version = '1.9' diff --git a/easybuild/easyconfigs/e/ed/ed-1.9-ictce-5.3.0.eb b/easybuild/easyconfigs/e/ed/ed-1.9-ictce-5.3.0.eb index e2bb71d26b..babb529111 100644 --- a/easybuild/easyconfigs/e/ed/ed-1.9-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/ed/ed-1.9-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ed' version = '1.9' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmpolf-1.1.6.eb index db1a11c235..32e37ffc4e 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmpolf-1.1.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.1.12rc1.eb index 885fb62b4e..a5482a0de8 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.1.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.2.7.eb index 2657f96b00..77192999ec 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.2.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgoolf-1.1.7.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgoolf-1.1.7.eb index 4490c6ffcf..7548d8a264 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgoolf-1.1.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2014b.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2014b.eb index afa69e8f7e..35e32ef7da 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2014b.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12.eb index 34675b49bb..1df1944fe7 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12rc1.eb index 81d33a8232..23118879c5 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-goalf-1.1.0-no-OFED.eb index 826a4829cc..207aea5fd5 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-goolf-1.4.10.eb index 9b38956344..ccfb1c69db 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-3.2.2.u3.eb index f638ff1919..3d951c24c9 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.0.6.eb index e70739f7fe..6fe54d636d 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.1.13.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.1.13.eb index 000716b57e..f59fe3f2c0 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.3.0.eb index 40a669ff0f..7717261400 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.5.0.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.5.0.eb index 3f6eb18305..45acf6dd3e 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb index 2260696155..f76c746c5e 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'expat' version = '2.1.0' diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb index a08695b156..ce824a5e56 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'FASTX-Toolkit' version = '0.0.13.2' diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb index 76e03ebe40..d68850c297 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'FASTX-Toolkit' version = '0.0.13.2' diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb index 2d17f5ad0f..c0fdac7c35 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'FASTX-Toolkit' version = '0.0.13.2' diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb index 7574e30596..f7fa06667c 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'FASTX-Toolkit' version = '0.0.13.2' diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb index 8b8c518961..96c1129290 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'FASTX-Toolkit' version = '0.0.14' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-GCC-4.6.3.eb b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-GCC-4.6.3.eb index c344270319..8ef1d25ea5 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-GCC-4.6.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '2.1.5' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-gompi-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-gompi-1.1.0-no-OFED.eb index b53f0f436c..207690907c 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-gompi-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-gompi-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '2.1.5' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.3.0.eb index ac0eb40ec0..27849ede43 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '2.1.5' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.5.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.5.0.eb index 106ede03db..a551eedc1d 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '2.1.5' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb index 7b985b5cf9..df746888b8 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.1' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb index 42cb2a8d06..47b8369c49 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.1' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb index d992f26518..8a16d17d96 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.1' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb index a823ad740d..f3605b7205 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.2' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmpich-1.1.6.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmpich-1.1.6.eb index 80feba4a1c..8ff5975e69 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmpich-1.1.6.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmpich-1.1.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.1.12rc1.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.1.12rc1.eb index 40d1e0e87e..f61ebb9aac 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.1.12rc1.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.1.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.2.7.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.2.7.eb index 4e7f8d5286..4129cff18b 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.2.7.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgmvapich2-1.2.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgompi-1.1.7.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgompi-1.1.7.eb index cad06b372f..d57604c1f8 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgompi-1.1.7.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-cgompi-1.1.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich2-1.4.8.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich2-1.4.8.eb index 3887cfc26f..42ee204e6f 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich2-1.4.8.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich2-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb index 2b2e62c38f..dbbb079aaf 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb index 51754660fb..7c08b5de11 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb index 25b0ad48d7..b7323c4cfc 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10-no-OFED.eb index b1f34e1fb3..b4a9a90a01 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10-no-OFED.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb index 014736bf74..bc93d09c52 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb index 2dbe4a6ca9..6ce64fb09e 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb index a6942002d0..a07a8a5b7a 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb index d65c099fd1..9273c85cd6 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb index 415c5c1a3c..23271fb82e 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb index eaa310e805..847312fb86 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' versionsuffix = '-single' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb index 241f6b5c41..0bde45211c 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb index 80dd3c03d5..8d6deb8033 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' versionsuffix = '-single' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb index 156f91bcc7..8b154894b8 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb index 36ae3de572..4e798279db 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' versionsuffix = '-single' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb index 72cfe6d029..223503bbeb 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb index 6d02cfaf9d..caca8b4256 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb index 548d0e10cf..e545bdb073 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-3.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb index 1d0dd40a97..30678616ef 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iiqmpi-4.4.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb index c48e36b7f3..cfa438bf8f 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.3' versionsuffix = '-single' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.12.eb index 85bfbf2081..7a9d4c279e 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.12.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.4' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14-no-OFED.eb index 8b42075650..128daff670 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14-no-OFED.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.4' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14.eb index a347bb868e..31bdfdd956 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.4' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb index 558d7de0dd..777e41c53d 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.4' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb index 63d927468f..a0dcf3f5cc 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.4' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb index d2421db818..aff8516503 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-ictce-7.1.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.4' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb index 80854df93d..1cb2cf1b40 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.4' diff --git a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb index 57b2aec7a6..0bc1badf5f 100644 --- a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb +++ b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim ( Cairo University ) # +easyblock = 'ConfigureMake' + name = 'FLTK' version = '1.3.2' diff --git a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-goolf-1.4.10.eb index 434e420496..9b7f1917c4 100644 --- a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-goolf-1.4.10.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim ( Cairo University ) # +easyblock = 'ConfigureMake' + name = 'FLTK' version = '1.3.2' diff --git a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-ictce-5.3.0.eb index 97c39edc10..11bcbb2f83 100644 --- a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-ictce-5.3.0.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim ( Cairo University ) # +easyblock = 'ConfigureMake' + name = 'FLTK' version = '1.3.2' diff --git a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb index 989680463f..5bc592de5f 100644 --- a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb +++ b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim ( Cairo University ) # +easyblock = 'ConfigureMake' + name = 'FLTK' version = '1.3.2' diff --git a/easybuild/easyconfigs/f/FRC_align/FRC_align-20130521-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FRC_align/FRC_align-20130521-goolf-1.4.10.eb index f1507f208b..aa0ce18c0c 100644 --- a/easybuild/easyconfigs/f/FRC_align/FRC_align-20130521-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FRC_align/FRC_align-20130521-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FRC_align' version = '20130521' diff --git a/easybuild/easyconfigs/f/FRC_align/FRC_align-20130521-ictce-4.1.13.eb b/easybuild/easyconfigs/f/FRC_align/FRC_align-20130521-ictce-4.1.13.eb index f2a67d0221..8a535e0b73 100644 --- a/easybuild/easyconfigs/f/FRC_align/FRC_align-20130521-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/f/FRC_align/FRC_align-20130521-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FRC_align' version = '20130521' diff --git a/easybuild/easyconfigs/f/file/file-5.17-GCC-4.8.2.eb b/easybuild/easyconfigs/f/file/file-5.17-GCC-4.8.2.eb index 4e21500e4c..63db8305d5 100644 --- a/easybuild/easyconfigs/f/file/file-5.17-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/file/file-5.17-GCC-4.8.2.eb @@ -3,6 +3,8 @@ # ## +easyblock = 'ConfigureMake' + name = 'file' version = '5.17' diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb index 1bd240ab55..6b2e49e08a 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'findutils' version = '4.2.33' diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb index 86701eecee..ea5abc6927 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.2.33-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'findutils' version = '4.2.33' diff --git a/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb index bcd48f3bbb..bd925b7e0f 100644 --- a/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/findutils/findutils-4.4.2-GCC-4.8.2.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'findutils' version = '4.4.2' diff --git a/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-goolf-1.4.10.eb b/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-goolf-1.4.10.eb index 50fd8ada0f..80e72c01e5 100644 --- a/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'fixesproto' version = '5.0' diff --git a/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-ictce-4.1.13.eb b/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-ictce-4.1.13.eb index 3b661266ea..c52db08f49 100644 --- a/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'fixesproto' version = '5.0' diff --git a/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-ictce-5.3.0.eb b/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-ictce-5.3.0.eb index 550ddb6d6e..06e3d71fba 100644 --- a/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'fixesproto' version = '5.0' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-goalf-1.1.0-no-OFED.eb index 5f71041388..82b3565a1d 100644 --- a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "fontconfig" version = '2.10.91' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-goolf-1.4.10.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-goolf-1.4.10.eb index 42d7b41c58..dd066a598f 100644 --- a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "fontconfig" version = '2.10.91' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-ictce-3.2.2.u3.eb index 891a043436..4598e6c851 100644 --- a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "fontconfig" version = '2.10.91' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-ictce-4.1.13.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-ictce-4.1.13.eb index 61ef5c14b4..954d9c78a7 100644 --- a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.10.91-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "fontconfig" version = '2.10.91' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-foss-2014b.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-foss-2014b.eb index 1e3ea79b2a..4cd5e51c8c 100644 --- a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-foss-2014b.eb +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "fontconfig" version = '2.11.1' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-ictce-5.5.0.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-ictce-5.5.0.eb index ce9413a3c0..bd134c69d5 100644 --- a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "fontconfig" version = '2.11.1' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb index 9b129da076..11bdc64e44 100644 --- a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "fontconfig" version = '2.11.1' diff --git a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-goolf-1.4.10.eb b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-goolf-1.4.10.eb index 11d38c6295..d7a5bba2c4 100644 --- a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'freeglut' version = '2.8.1' diff --git a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-4.1.13.eb b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-4.1.13.eb index 2c7f621177..7f4b598d23 100644 --- a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'freeglut' version = '2.8.1' diff --git a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-5.3.0.eb b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-5.3.0.eb index 5a15cb7719..0519e56f11 100644 --- a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'freeglut' version = '2.8.1' diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.4.10.eb index 62e541c4f9..884cb40842 100644 --- a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GDAL' version = '1.9.2' diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-4.1.13.eb b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-4.1.13.eb index 8f1faabe98..9a0c3842fb 100644 --- a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GDAL' version = '1.9.2' diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-5.3.0.eb index 3cbfbb519a..eb57686131 100644 --- a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GDAL' version = '1.9.2' diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-iqacml-3.7.3.eb b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-iqacml-3.7.3.eb index c0784ea6c9..b400835265 100644 --- a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GDAL' version = '1.9.2' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb index cb436b3c96..2278befdce 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmpolf-1.1.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-05.html ## +easyblock = 'ConfigureMake' + name = 'GDB' version = '7.5.1' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb index f1bd1f3ddc..7e35ed60fd 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.1.12rc1.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-05.html ## +easyblock = 'ConfigureMake' + name = 'GDB' version = '7.5.1' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb index 1df9f9cfc1..5c2723f3cc 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgmvolf-1.2.7.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-05.html ## +easyblock = 'ConfigureMake' + name = 'GDB' version = '7.5.1' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb index 3b0533cbbd..a55ddb3780 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-cgoolf-1.1.7.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-05.html ## +easyblock = 'ConfigureMake' + name = 'GDB' version = '7.5.1' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb index deb82cad20..5cb326d9c8 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12.eb @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-05.html ## +easyblock = 'ConfigureMake' + name = 'GDB' version = '7.5.1' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb index d2df4d53a8..9a83935f73 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-gmvolf-1.7.12rc1.eb @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-05.html ## +easyblock = 'ConfigureMake' + name = 'GDB' version = '7.5.1' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb index d61b95771d..e69629310c 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-05.html ## +easyblock = 'ConfigureMake' + name = 'GDB' version = '7.5.1' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb index 7adfdc3e9c..633ee3c7d8 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.5.1-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-05.html ## +easyblock = 'ConfigureMake' + name = 'GDB' version = '7.5.1' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.8-intel-2014b.eb b/easybuild/easyconfigs/g/GDB/GDB-7.8-intel-2014b.eb index d481e6520c..c2447f730c 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.8-intel-2014b.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.8-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GDB' version = '7.8' diff --git a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goalf-1.1.0-no-OFED.eb index 2e8a84a642..ab3440a25c 100644 --- a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GEOS' version = '3.3.5' diff --git a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goolf-1.4.10.eb index a3573d982c..28fdadb86f 100644 --- a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GEOS' version = '3.3.5' diff --git a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-4.0.6.eb index ebdfb8874a..0b85c86242 100644 --- a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GEOS' version = '3.3.5' diff --git a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-5.3.0.eb index 04aa7021b8..27b9e83b61 100644 --- a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GEOS' version = '3.3.5' diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.2.0.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.2.0.eb index 7e1027f357..afaaab1f33 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLPK' version = '4.48' diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.3.0.eb index c44466fc3b..4716a30ce5 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLPK' version = '4.48' diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.53-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.53-goolf-1.4.10.eb index cb34428fa6..9aae296531 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.53-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.53-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLPK' version = '4.53' diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.53-ictce-6.2.5.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.53-ictce-6.2.5.eb index 6d0e9c123d..b55056667c 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.53-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.53-ictce-6.2.5.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLPK' version = '4.53' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gmpolf-1.4.8.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gmpolf-1.4.8.eb index 45fb82af4e..0154f92cba 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.34.3' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gmpolf-1.5.14.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gmpolf-1.5.14.eb index cc95daf96d..524a65b421 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gmpolf-1.5.14.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gmpolf-1.5.14.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.34.3' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goalf-1.1.0-no-OFED.eb index e23ae02de7..b3f747f733 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.34.3' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gompi-1.4.12-no-OFED.eb index 5099cd7013..33fdefa087 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gompi-1.4.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.34.3' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goolf-1.4.10.eb index 867c70b804..fe8be618bc 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.34.3' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.0.6.eb index e63e6d5920..7330ea1391 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.34.3' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.1.13.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.1.13.eb index 180e84e81a..66974822a8 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.34.3' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.2.0.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.2.0.eb index 075de5f34f..6e94d0afc6 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.34.3' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.3.0.eb index ddeef5db37..d913bace56 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.34.3' diff --git a/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-goolf-1.4.10.eb index 809e34a7b8..b43b269c3d 100644 --- a/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMAP' version = '2013-11-27' diff --git a/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-ictce-5.3.0.eb index 4e6d4dcdae..bd210fa4da 100644 --- a/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMAP' version = '2013-11-27' diff --git a/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-ictce-5.5.0.eb b/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-ictce-5.5.0.eb index bc43d8e9e5..4f8e4ce300 100644 --- a/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMAP' version = '2013-11-27' diff --git a/easybuild/easyconfigs/g/GMP/GMP-4.3.2.eb b/easybuild/easyconfigs/g/GMP/GMP-4.3.2.eb index 9369857787..83a58f1b10 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-4.3.2.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-4.3.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '4.3.2' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.0.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-goalf-1.1.0-no-OFED.eb index 5ac95548c6..9ab24027f4 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.0.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.0.5' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-goolf-1.4.10.eb index 55c5f37815..5f08671128 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.0.5' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-4.0.6.eb index f1159a6aff..764cf5d100 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.0.5' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-5.3.0.eb index 5210df2a67..10293bba6c 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.0.5' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.1-goolf-1.4.10.eb index 11f7255e6a..1089f784b4 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.1.1' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.2.0.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.2.0.eb index b66e19d047..7e154f1b44 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.1.1' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.3.0.eb index dab5591a11..d55767c538 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.1.1' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-6.2.5.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-6.2.5.eb index 6234e96c98..9dd85e3f74 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.1-ictce-6.2.5.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.1.1' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-GCC-4.8.2.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-GCC-4.8.2.eb index 7e4ff5ce71..5273006653 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.1.3' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-goolf-1.4.10.eb index d4a6c09372..a376bcfd0f 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.1.3' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-ictce-5.3.0.eb index 4ab9f55d3c..b1a1509d11 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.1.3' diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-ictce-5.5.0.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-ictce-5.5.0.eb index f723747d14..5acb2c72f3 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GMP' version = '5.1.3' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.15-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GSL/GSL-1.15-goalf-1.1.0-no-OFED.eb index aa9ed9d6e0..85ec8681aa 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.15-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.15-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.15' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.15-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GSL/GSL-1.15-goolf-1.4.10.eb index 2ee4d9e6cd..2bc7e232eb 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.15-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.15-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.15' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-4.0.6.eb index d1b3c6c699..3ee18f98a2 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.15' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-5.3.0.eb index b06aa6754e..a0f7045209 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.15-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.15' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.15-intel-2014b.eb b/easybuild/easyconfigs/g/GSL/GSL-1.15-intel-2014b.eb index 4fc03f73ee..3d34fbf06f 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.15-intel-2014b.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.15-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.15' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.4.10.eb index 2d05bc4775..e84b9ab73d 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.16' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-1.3.12.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-1.3.12.eb index c792614359..e8786d7d1a 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-1.3.12.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-1.3.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.16' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-2.6.10.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-2.6.10.eb index db182f74d8..cf7dda1aff 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-2.6.10.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.16' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.3.0.eb index 4a05725830..e94c14b23e 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.16' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.5.0.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.5.0.eb index f649ead9a5..1291647435 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.16' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-6.2.5.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-6.2.5.eb index c460ded159..e5967da16f 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-6.2.5.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.16' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-intel-2014b.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-intel-2014b.eb index 3a457fc8cc..3587bf11b9 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-intel-2014b.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GSL' version = '1.16' diff --git a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.10-goolf-1.4.10.eb b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.10-goolf-1.4.10.eb index 9e63e7389c..8aa2e7719b 100644 --- a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.10-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.10-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Ghostscript' version = '9.10' diff --git a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.10-ictce-4.1.13.eb b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.10-ictce-4.1.13.eb index 12bdcd0f27..639074ff9e 100644 --- a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.10-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.10-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Ghostscript' version = '9.10' diff --git a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb index 2925e740d0..39b5e35917 100644 --- a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'gawk' version = '4.0.2' diff --git a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb index d7d2c6c4b9..75c54349b6 100644 --- a/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gawk/gawk-4.0.2-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'gawk' version = '4.0.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmpolf-1.1.6.eb index 2d9e22b986..9374bda6a4 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmpolf-1.1.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.1.12rc1.eb index 74ed768df4..7b4d0a27b1 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.1.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.2.7.eb index 4bcc26447a..5c108441ee 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgmvolf-1.2.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgoolf-1.1.7.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgoolf-1.1.7.eb index a32268bf8f..6641138131 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-cgoolf-1.1.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmpolf-1.4.8.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmpolf-1.4.8.eb index 1fede7e4c6..7cd7a0f578 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12.eb index 87753bfbc9..89a32b62e0 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12rc1.eb index b9cff2211e..bac88b866a 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gmvolf-1.7.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goalf-1.1.0-no-OFED.eb index c26723dfec..dde39ff832 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gompi-1.4.12-no-OFED.eb index 35cded15c6..94025ea53e 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-gompi-1.4.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goolf-1.4.10.eb index 8c7cc9b4b8..686c6f9d40 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goolf-1.5.14.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goolf-1.5.14.eb index a2620bf8f9..adf041c9d3 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-goolf-1.5.14.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.0.6.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.0.6.eb index 3eddb0a6d2..514029b0c2 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.1.13.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.1.13.eb index 56598b375e..ea88dd569c 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.2.0.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.2.0.eb index be4e49be17..5479e98f23 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.3.0.eb index 3c2d60cef2..21f6d06397 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.18.2' diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb index a7ceb87c96..6e6602e1ac 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.7.12' diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb index 6150bb25f4..bba320bc05 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.7.12' diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb index 79cfa75c2a..08b113a1e9 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.7.12' diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb index d100ae026a..75c6bb092f 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.7.12' diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb index 166fd30f2d..6a6c3a3ab6 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgmpolf-1.1.6.eb @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.8.2' diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb index d4f12bfbff..031cdf8a76 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.1.12rc1.eb @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.8.2' diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb index cdc20ab30b..0400716225 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgmvolf-1.2.7.eb @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.8.2' diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb b/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb index 15caad06a9..f5e0842b35 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-cgoolf-1.1.7.eb @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.8.2' diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb index 771933aaa0..544929857c 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12.eb @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.8.2' diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb index 97e0188ea6..89c596b617 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-gmvolf-1.7.12rc1.eb @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.8.2' diff --git a/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb index 2c40cf55bc..a705caba43 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.2-goolf-1.4.10.eb @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.8.2' diff --git a/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb index c6b980ef49..6dfc4c5947 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.3.1-goolf-1.4.10.eb @@ -11,6 +11,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'git' version = '1.8.3.1' diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goalf-1.1.0-no-OFED.eb index 5dc0bc40c6..fefd3eeaab 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'glproto' version = '1.4.16' diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goolf-1.4.10.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goolf-1.4.10.eb index 17a12f2d72..2c1515c3ee 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'glproto' version = '1.4.16' diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.0.6.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.0.6.eb index ea7273eaed..1316bedb2a 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'glproto' version = '1.4.16' diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.1.13.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.1.13.eb index 7edb503d95..282c406ca1 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'glproto' version = '1.4.16' diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.3.0.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.3.0.eb index 0b6ca01735..efe43edfab 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'glproto' version = '1.4.16' diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.5.0.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.5.0.eb index d412b2d2fa..828a170d20 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'glproto' version = '1.4.16' diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb index 276e9682fb..81a026fc55 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'gnuplot' version = '4.6.0' diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb index e7e13a73a5..9c6317ae8b 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'gnuplot' version = '4.6.0' diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb index fafe9765da..a473b4546f 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'gnuplot' version = '4.6.0' diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb index f116e81718..c4db96bf96 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'gnuplot' version = '4.6.0' diff --git a/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goalf-1.1.0-no-OFED.eb index 05a624232e..8746928b55 100644 --- a/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gnutls' version = '3.1.8' diff --git a/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goolf-1.4.10.eb index ccb40b1358..110dff5cb7 100644 --- a/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gnutls' version = '3.1.8' diff --git a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goalf-1.1.0-no-OFED.eb index 6db3e7e4bd..f3f86925e6 100644 --- a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'google-sparsehash' version = '2.0.2' diff --git a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goolf-1.4.10.eb index 44e93965c4..a0d26dcb60 100644 --- a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'google-sparsehash' version = '2.0.2' diff --git a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-4.0.6.eb b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-4.0.6.eb index 566dfdf3af..8fa567fea4 100644 --- a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'google-sparsehash' version = '2.0.2' diff --git a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-5.3.0.eb index 0f904cafdd..24f5fb8427 100644 --- a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'google-sparsehash' version = '2.0.2' diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goalf-1.1.0-no-OFED.eb index 72bf9736f8..a5318892cf 100644 --- a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gperf' version = '3.0.4' diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goolf-1.4.10.eb index bad261c98a..ef45494212 100644 --- a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gperf' version = '3.0.4' diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-4.0.6.eb b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-4.0.6.eb index 3a83b14550..574b337302 100644 --- a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gperf' version = '3.0.4' diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-5.3.0.eb index 18fd84fe28..c2990d1702 100644 --- a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gperf' version = '3.0.4' diff --git a/easybuild/easyconfigs/g/gperftools/gperftools-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gperftools/gperftools-2.1-goolf-1.4.10.eb index 5a3e833ff0..096c2f555b 100644 --- a/easybuild/easyconfigs/g/gperftools/gperftools-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gperftools/gperftools-2.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "gperftools" version = "2.1" diff --git a/easybuild/easyconfigs/g/gperftools/gperftools-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gperftools/gperftools-2.1-ictce-5.3.0.eb index bdbfa99fd8..925e00b373 100644 --- a/easybuild/easyconfigs/g/gperftools/gperftools-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gperftools/gperftools-2.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "gperftools" version = "2.1" diff --git a/easybuild/easyconfigs/g/grace/grace-5.1.23-intel-2014b.eb b/easybuild/easyconfigs/g/grace/grace-5.1.23-intel-2014b.eb index d198c7205c..5921bc9256 100644 --- a/easybuild/easyconfigs/g/grace/grace-5.1.23-intel-2014b.eb +++ b/easybuild/easyconfigs/g/grace/grace-5.1.23-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grace' version = '5.1.23' diff --git a/easybuild/easyconfigs/g/grep/grep-2.15-goolf-1.4.10.eb b/easybuild/easyconfigs/g/grep/grep-2.15-goolf-1.4.10.eb index 143a105005..3251b6e5c5 100644 --- a/easybuild/easyconfigs/g/grep/grep-2.15-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/grep/grep-2.15-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grep' version = '2.15' diff --git a/easybuild/easyconfigs/g/grep/grep-2.15-ictce-5.3.0.eb b/easybuild/easyconfigs/g/grep/grep-2.15-ictce-5.3.0.eb index b449082b00..268917c5ae 100644 --- a/easybuild/easyconfigs/g/grep/grep-2.15-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/grep/grep-2.15-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grep' version = '2.15' diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-goolf-1.4.10.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-goolf-1.4.10.eb index d4a0f4a707..ffd2e3a7a6 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grib_api' version = '1.10.0' diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-ictce-4.1.13.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-ictce-4.1.13.eb index 6dfcd4df79..8f6396f5b8 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grib_api' version = '1.10.0' diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-ictce-5.3.0.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-ictce-5.3.0.eb index 071d45e481..ee472aa372 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.10.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grib_api' version = '1.10.0' diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goalf-1.1.0-no-OFED.eb index 7c24adf192..5cea12d320 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grib_api' version = '1.9.18' diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goolf-1.4.10.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goolf-1.4.10.eb index 34b1b6d0f0..8e5630b19c 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grib_api' version = '1.9.18' diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-4.1.13.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-4.1.13.eb index d7f173a7dd..2e926b4cab 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grib_api' version = '1.9.18' diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-5.3.0.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-5.3.0.eb index 506c51621f..831f1d1677 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'grib_api' version = '1.9.18' diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-goalf-1.1.0-no-OFED.eb index 9596baa7ba..17fa80e4df 100644 --- a/easybuild/easyconfigs/g/guile/guile-1.8.8-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'guile' version = '1.8.8' diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-goolf-1.4.10.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-goolf-1.4.10.eb index 215f5b7322..80c9c68431 100644 --- a/easybuild/easyconfigs/g/guile/guile-1.8.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'guile' version = '1.8.8' diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-4.0.6.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-4.0.6.eb index 517a4e5549..67e9066e3c 100644 --- a/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'guile' version = '1.8.8' diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-5.3.0.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-5.3.0.eb index 1db90196a2..18eb7970f8 100644 --- a/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'guile' version = '1.8.8' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-cgoolf-1.1.7.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-cgoolf-1.1.7.eb index 5457e6d892..96eb4d4a94 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-cgoolf-1.1.7.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.5' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-gmpolf-1.4.8.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-gmpolf-1.4.8.eb index 7949d851ed..627ddf488d 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-gmpolf-1.4.8.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.5' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-goalf-1.1.0-no-OFED.eb index acb7e90d49..282fc7aa9f 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.5' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-goolf-1.4.10.eb index 78ba032893..04f2007013 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.5' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.0.6.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.0.6.eb index 5cff62f0ca..2072304457 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.5' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.1.13.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.1.13.eb index 2fe7409a9e..34e650a014 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-4.1.13.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.5' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-5.3.0.eb index 42edcfbbc8..677ec0c4a6 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.5-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.5' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.4.10-no-OFED.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.4.10-no-OFED.eb index 00881818f0..287abca2e5 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.4.10-no-OFED.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.4.10-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.6' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14-no-OFED.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14-no-OFED.eb index 81dfe171a8..e4663d467a 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14-no-OFED.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.6' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14.eb index e3c2131d4d..87a654b58c 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.5.14.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.6' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.6.10.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.6.10.eb index 8aefa658eb..86cfca091f 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolf-1.6.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.6' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolfc-1.4.10.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolfc-1.4.10.eb index 8824e90b15..53a369c2e4 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-goolfc-1.4.10.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-goolfc-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.6' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.3.0.eb index 21e29f76c9..d309818ed8 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.6' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.5.0.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.5.0.eb index ec9ea86946..5f29b035e2 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-5.5.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.6' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-6.2.5.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-6.2.5.eb index 8c3304ae5f..036f697797 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-ictce-6.2.5.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.6' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-iomkl-6.6.2.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-iomkl-6.6.2.eb index 9763d27a88..4c7117a6e2 100644 --- a/easybuild/easyconfigs/g/gzip/gzip-1.6-iomkl-6.6.2.eb +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-iomkl-6.6.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gzip' version = '1.6' diff --git a/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-goalf-1.1.0-no-OFED.eb index e995d9cfbc..5cdf92f035 100644 --- a/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'HDF' version = '4.2.7-patch1' diff --git a/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-goolf-1.4.10.eb index 144aadbb34..49d7098c87 100644 --- a/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'HDF' version = '4.2.7-patch1' diff --git a/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-3.2.2.u3.eb index 0a219c43cb..6de0d3d8d3 100644 --- a/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'HDF' version = '4.2.7-patch1' diff --git a/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-5.3.0.eb index e44680caf1..46c998562c 100644 --- a/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HDF/HDF-4.2.7-patch1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'HDF' version = '4.2.7-patch1' diff --git a/easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-4.1.13.eb b/easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-4.1.13.eb index f40a982742..b955c4abf7 100644 --- a/easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'HDF' version = '4.2.8' diff --git a/easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-5.3.0.eb index 1c4c00dc01..c9f730872f 100644 --- a/easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HDF/HDF-4.2.8-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'HDF' version = '4.2.8' diff --git a/easybuild/easyconfigs/h/HDF/HDF-4.2.8-iqacml-3.7.3.eb b/easybuild/easyconfigs/h/HDF/HDF-4.2.8-iqacml-3.7.3.eb index 7a34de4b31..6866cddf63 100644 --- a/easybuild/easyconfigs/h/HDF/HDF-4.2.8-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/h/HDF/HDF-4.2.8-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'HDF' version = '4.2.8' diff --git a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb index cb074cec82..c29c1cc257 100644 --- a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = "HH-suite" version = "2.0.16" diff --git a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb index 4f60dd03a4..6fd5c2e8bf 100644 --- a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = "HH-suite" version = "2.0.16" diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb index 089de15774..3879fe81ad 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'HMMER' version = '3.0' diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb index 25665337a8..2c24669f8f 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'HMMER' version = '3.0' diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb index aaa3ed4288..43301b81dc 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'HMMER' version = '3.0' diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb index 14fe2e3949..11e40f315c 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'HMMER' version = '3.0' diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb index 7739085476..35d93e8b65 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'HMMER' version = '3.1b1' diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb index 42145a7565..6b7248a777 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'HMMER' version = '3.1b1' diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb index 81b0377519..b56baf902e 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'HMMER' version = '3.1b1' diff --git a/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-goalf-1.1.0-no-OFED.eb index 53ea95f6f3..85cb6ef13e 100644 --- a/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Harminv' version = '1.3.1' diff --git a/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-goolf-1.4.10.eb index 0462e08a31..d46bdf7367 100644 --- a/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Harminv' version = '1.3.1' diff --git a/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-4.0.6.eb b/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-4.0.6.eb index 57b245c9a6..6b132f600a 100644 --- a/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Harminv' version = '1.3.1' diff --git a/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-5.3.0.eb index eae6a86d12..44e47d185b 100644 --- a/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/Harminv/Harminv-1.3.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Harminv' version = '1.3.1' diff --git a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goalf-1.1.0-no-OFED.eb index 98a7dfc4b2..c8bbf3c141 100644 --- a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'h5utils' version = '1.12.1' diff --git a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goolf-1.4.10.eb index a99b79c02f..2c3932e7b7 100644 --- a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'h5utils' version = '1.12.1' diff --git a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-4.0.6.eb b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-4.0.6.eb index 01ce6cafa3..ed7d1cacaa 100644 --- a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'h5utils' version = '1.12.1' diff --git a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-5.3.0.eb index f7f33b20cd..975690f50f 100644 --- a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'h5utils' version = '1.12.1' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-GCC-4.6.3.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-GCC-4.6.3.eb index 2589f07d49..83008d4b9b 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-GCC-4.6.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.5.1' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-ictce-5.3.0.eb index 4255032ed4..12046c63a2 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.5.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.5.1' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.6-iccifort-2011.13.367.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.6-iccifort-2011.13.367.eb index 389707f4a2..769286a6c2 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.6-iccifort-2011.13.367.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.6-iccifort-2011.13.367.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.6' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.6-ictce-5.3.0.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.6-ictce-5.3.0.eb index f1b284038d..11db3431f1 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.6-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.6' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ClangGCC-1.1.3.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ClangGCC-1.1.3.eb index 9c8a7edb31..21df483130 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ClangGCC-1.1.3.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ClangGCC-1.1.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.6.2' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.6.4.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.6.4.eb index 116ee4cb8c..3c07bbe614 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.6.4.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.6.4.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.6.2' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.7.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.7.2.eb index 00a3ce7444..19d34c3d1a 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.6.2' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ictce-5.3.0.eb index a5fd17b348..35e5b4d3bc 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.6.2' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-GCC-4.8.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-GCC-4.8.2.eb index e766a8df7f..ade75969bd 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = "1.7.2" diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-ictce-5.3.0.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-ictce-5.3.0.eb index 5abd7ea765..bbe1c894d7 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = "1.7.2" diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.8-gcccuda-2.6.10.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.8-gcccuda-2.6.10.eb index 16ef9ff42e..b8de1f4777 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.8-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.8-gcccuda-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = "1.8" diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.2.eb index 1a2541a79b..cb11169e92 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = "1.8.1" diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-iccifort-2013_sp1.2.144.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-iccifort-2013_sp1.2.144.eb index 4578e9944c..a67b8a8766 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-iccifort-2013_sp1.2.144.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-iccifort-2013_sp1.2.144.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.8.1' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.9-GCC-4.8.3.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.9-GCC-4.8.3.eb index 58fbfca671..c21425bb3c 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.9-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.9-GCC-4.8.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = "1.9" diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb index 7415ab24e0..cd6c0100f0 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'Infernal' version = '1.1rc1' diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb index 6945e77e67..b6c3429f3e 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'Infernal' version = '1.1rc1' diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb index dff2cc0d32..6c6330c16b 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'Infernal' version = '1.1rc1' diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb index c77f843008..705db63559 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'Infernal' version = '1.1rc1' diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb index 6f98d6e4e6..2bd2eaa620 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Iperf' version = '2.0.5' diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb index 14b447fd91..c1d7b2439f 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Iperf' version = '2.0.5' diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb index 2c15a5a1a2..27fbe32e7f 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Iperf' version = '2.0.5' diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb index 9efc7c2982..a244a5f6bb 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Iperf' version = '2.0.5' diff --git a/easybuild/easyconfigs/i/imake/imake-1.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/i/imake/imake-1.0.5-goolf-1.4.10.eb index 38d406d02b..c435db372c 100644 --- a/easybuild/easyconfigs/i/imake/imake-1.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/imake/imake-1.0.5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'imake' version = '1.0.5' diff --git a/easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-4.1.13.eb b/easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-4.1.13.eb index 17ce1fd060..7f14fd72e4 100644 --- a/easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'imake' version = '1.0.5' diff --git a/easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-5.3.0.eb b/easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-5.3.0.eb index 2a9e2558db..5148175660 100644 --- a/easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/imake/imake-1.0.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'imake' version = '1.0.5' diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-foss-2014b.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-foss-2014b.eb index 43dc2abd21..3297e8dea0 100644 --- a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-foss-2014b.eb +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'inputproto' version = '2.3' diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-goolf-1.4.10.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-goolf-1.4.10.eb index 155c39ec04..1e1be175b1 100644 --- a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'inputproto' version = '2.3' diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-ictce-4.1.13.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-ictce-4.1.13.eb index 65764f964b..75a9c42cf7 100644 --- a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'inputproto' version = '2.3' diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-ictce-5.3.0.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-ictce-5.3.0.eb index 554430022b..804a25ce18 100644 --- a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'inputproto' version = '2.3' diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2014b.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2014b.eb index b3e2108793..e307d5deb4 100644 --- a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2014b.eb +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'inputproto' version = '2.3' diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb index 6651ce62eb..f0fdf4369d 100644 --- a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'JAGS' version = '3.4.0' diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb index e4b5d0b0c1..9b984fa0fd 100644 --- a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'JAGS' version = '3.4.0' diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb index 549a3902e7..a19a5f06c5 100644 --- a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb +++ b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'JAGS' version = '3.4.0' diff --git a/easybuild/easyconfigs/j/Jansson/Jansson-2.5-gcccuda-2.6.10.eb b/easybuild/easyconfigs/j/Jansson/Jansson-2.5-gcccuda-2.6.10.eb index 5bc100cb87..d889b3d0b2 100644 --- a/easybuild/easyconfigs/j/Jansson/Jansson-2.5-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/j/Jansson/Jansson-2.5-gcccuda-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Jansson' version = "2.5" diff --git a/easybuild/easyconfigs/j/Jansson/Jansson-2.6-GCC-4.8.3.eb b/easybuild/easyconfigs/j/Jansson/Jansson-2.6-GCC-4.8.3.eb index 7c649de5a0..0803b327c8 100644 --- a/easybuild/easyconfigs/j/Jansson/Jansson-2.6-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/j/Jansson/Jansson-2.6-GCC-4.8.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Jansson' version = "2.6" diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goalf-1.1.0-no-OFED.eb index 16acc85d45..0c8eec58be 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'JasPer' version = '1.900.1' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.4.10.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.4.10.eb index 111b927cee..af3ac8dc98 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'JasPer' version = '1.900.1' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.5.14.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.5.14.eb index e39ef2464a..e398d414f1 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.5.14.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'JasPer' version = '1.900.1' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-3.2.2.u3.eb index 3cb0d6093e..33aaa71fc2 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'JasPer' version = '1.900.1' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-4.1.13.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-4.1.13.eb index ea6c4d5996..c12081b201 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'JasPer' version = '1.900.1' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-5.3.0.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-5.3.0.eb index b194103549..0ed1064ed8 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'JasPer' version = '1.900.1' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-5.5.0.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-5.5.0.eb index e4696e4c8b..fe27277567 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'JasPer' version = '1.900.1' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-iqacml-3.7.3.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-iqacml-3.7.3.eb index 235162441a..7623c83325 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'JasPer' version = '1.900.1' diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-goolf-1.4.10.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-goolf-1.4.10.eb index 65d9262c6c..595bb566df 100644 --- a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.1.3-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'Jellyfish' version = '2.1.3' diff --git a/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb b/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb index ced08473ce..9315d81b5a 100644 --- a/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb +++ b/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Kerberos_V5' version = '1.12.2' diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-foss-2014b.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-foss-2014b.eb index eb388209ba..7482053f6f 100644 --- a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-foss-2014b.eb +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'kbproto' version = '1.0.6' diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-goolf-1.4.10.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-goolf-1.4.10.eb index 65b4c068d1..e54e5f74c9 100644 --- a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'kbproto' version = '1.0.6' diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-4.1.13.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-4.1.13.eb index 5ad8638fca..3790a57f15 100644 --- a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'kbproto' version = '1.0.6' diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-5.3.0.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-5.3.0.eb index 598911385e..664996727e 100644 --- a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'kbproto' version = '1.0.6' diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2014b.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2014b.eb index 8ac7db68a1..31cb837d0f 100644 --- a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2014b.eb +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'kbproto' version = '1.0.6' diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb index 20d4dedd9b..01b0d95ad8 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'LZO' version = '2.06' diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb index 8bf3b36b6b..4244d4fadb 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'LZO' version = '2.06' diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb index bb09c55c3e..115d1188ad 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'LZO' version = '2.06' diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb index f4664371e0..266ce97e25 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'LZO' version = '2.06' diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb index 35dcbd7266..d1e8d56383 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'LZO' version = '2.06' diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb index 3fef7369e5..64a60f0f66 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'LibTIFF' version = '4.0.3' diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb index c8a56f9e00..ea5c5f104f 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'LibTIFF' version = '4.0.3' diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb index 25b2371d64..8607639444 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'LibTIFF' version = '4.0.3' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb index 9d92c7b151..c6bc75307e 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Libint' version = '1.1.4' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb index 17407ad7b5..223781541f 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Libint' version = '1.1.4' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb index 2771e5e1cc..77d1fbe8e6 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Libint' version = '1.1.4' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb index 19243bd56d..34961f7588 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Libint' version = '1.1.4' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb index df7ae20900..8118a5507e 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Libint' version = '1.1.4' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb index 8cc0275ce4..663ec769c6 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Libint' version = '1.1.4' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb index da01cdde8f..30ddc9f19c 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Libint' version = '1.1.4' diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.7.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.7.2.eb index 988d710727..dafa99bf9c 100644 --- a/easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lmod" version = "5.2" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.8.2.eb index 4d0d5e01bc..3f6adb2e4b 100644 --- a/easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.2-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lmod" version = "5.2" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.2-goolf-1.4.10.eb index 8b641dfb5f..fc1ccc2e05 100644 --- a/easybuild/easyconfigs/l/Lmod/Lmod-5.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lmod" version = "5.2" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.2.5-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.2.5-GCC-4.8.2.eb index 898aff188b..79641dbdef 100644 --- a/easybuild/easyconfigs/l/Lmod/Lmod-5.2.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.2.5-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lmod" version = "5.2.5" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.3-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.3-GCC-4.8.2.eb index 0331bf0116..e6fc678e23 100644 --- a/easybuild/easyconfigs/l/Lmod/Lmod-5.3-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.3-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lmod" version = "5.3" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.4-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.4-GCC-4.8.2.eb index 48d4c46271..9844fbdfdc 100644 --- a/easybuild/easyconfigs/l/Lmod/Lmod-5.4-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.4-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lmod" version = "5.4" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.4.2-GCC-4.8.2.eb index bf79635a7b..52c285e604 100644 --- a/easybuild/easyconfigs/l/Lmod/Lmod-5.4.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.4.2-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lmod" version = "5.4.2" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.5-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.5-GCC-4.8.2.eb index 2c8f284bdd..c4a1215855 100644 --- a/easybuild/easyconfigs/l/Lmod/Lmod-5.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.5-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lmod" version = "5.5" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.5.1-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.5.1-GCC-4.8.2.eb index 90c9e48256..3dc166bd16 100644 --- a/easybuild/easyconfigs/l/Lmod/Lmod-5.5.1-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.5.1-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lmod" version = "5.5.1" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.6-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.6-GCC-4.8.2.eb index f8d516d593..87217debc9 100644 --- a/easybuild/easyconfigs/l/Lmod/Lmod-5.6-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.6-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lmod" version = "5.6" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.7-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.7-GCC-4.8.2.eb index a1d159711c..04d26d64f7 100644 --- a/easybuild/easyconfigs/l/Lmod/Lmod-5.7-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.7-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lmod" version = "5.7" diff --git a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.7.2.eb b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.7.2.eb index 6089259852..42d88db94d 100644 --- a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lua" version = "5.1.4-5" diff --git a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb index 88109be8ee..31389a4078 100644 --- a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lua" version = "5.1.4-5" diff --git a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-goolf-1.4.10.eb b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-goolf-1.4.10.eb index e8d1e81e0c..c87b16fa92 100644 --- a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lua" version = "5.1.4-5" diff --git a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb index 2d4f7773d7..85d67ef440 100644 --- a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lua" version = "5.1.4-8" diff --git a/easybuild/easyconfigs/l/less/less-458-GCC-4.8.2.eb b/easybuild/easyconfigs/l/less/less-458-GCC-4.8.2.eb index d1b5eea801..3ee23b3ce7 100644 --- a/easybuild/easyconfigs/l/less/less-458-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/less/less-458-GCC-4.8.2.eb @@ -3,6 +3,8 @@ # ## +easyblock = 'ConfigureMake' + name = 'less' version = '458' diff --git a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb index 671e89fe5c..36b7df3cbb 100644 --- a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'lftp' version = '4.4.1' diff --git a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb index f3cc8ef6f7..9d1f79e19b 100644 --- a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'lftp' version = '4.4.1' diff --git a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-goolf-1.4.10.eb index b9be2efae2..e1317b6a06 100644 --- a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libICE' version = '1.0.8' diff --git a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-4.1.13.eb index 7c9daa8b70..a224ca2f47 100644 --- a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libICE' version = '1.0.8' diff --git a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-5.3.0.eb index 50c2ca78b7..84dfd42c65 100644 --- a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libICE' version = '1.0.8' diff --git a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-intel-2014b.eb b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-intel-2014b.eb index 10599f6625..d296c6ae8c 100644 --- a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libICE' version = '1.0.8' diff --git a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-goolf-1.4.10.eb index 16060206da..aa6111e5a0 100644 --- a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libSM' version = '1.2.1' diff --git a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-4.1.13.eb index 87bf885311..14074eae88 100644 --- a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libSM' version = '1.2.1' diff --git a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-5.3.0.eb index d00cbdc986..ee47bc867f 100644 --- a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libSM' version = '1.2.1' diff --git a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-intel-2014b.eb b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-intel-2014b.eb index 8b3d6ebdeb..8182108112 100644 --- a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libSM' version = '1.2.1' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.4.10.eb index cd12d86ab2..520bd74e88 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libX11' version = '1.6.1' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-4.1.13.eb index eb5f4b8d24..693be4e809 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libX11' version = '1.6.1' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-5.3.0.eb index 583a481c18..0e6ea38eed 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libX11' version = '1.6.1' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2014b.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2014b.eb index 861f25a302..893f0011c6 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libX11' version = '1.6.1' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-foss-2014b-Python-2.7.8.eb index 3018314f3d..2f11de3348 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-foss-2014b-Python-2.7.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libX11' version = '1.6.2' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb index f3e90fc998..491d7b754b 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libX11' version = '1.6.2' versionsuffix = '-Python-2.7.8' diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-foss-2014b.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-foss-2014b.eb index 3443dffebd..26a7c1bcad 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-foss-2014b.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXau' version = '1.0.8' diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.4.10.eb index 7ce23e22cf..1cbc16e8bb 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXau' version = '1.0.8' diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-4.1.13.eb index a284b7f633..aa72c34e22 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXau' version = '1.0.8' diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-5.3.0.eb index 7ed70c847e..61b3a03f5e 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXau' version = '1.0.8' diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb index 9f69ff8304..de65887437 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXau' version = '1.0.8' diff --git a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-goolf-1.4.10.eb index 5ffb688011..0afe4224f6 100644 --- a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXaw' version = '1.0.12' diff --git a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-4.1.13.eb index b762b2fc11..dbbc5cbafd 100644 --- a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXaw' version = '1.0.12' diff --git a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-5.3.0.eb index 8cda879d73..ab991baeb1 100644 --- a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXaw' version = '1.0.12' diff --git a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2014b.eb b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2014b.eb index 929d508f10..a15cb924db 100644 --- a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXdmcp' version = '1.1.1' diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-foss-2014b-Python-2.7.8.eb index 3e5c38bc21..2ed55c95cd 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-foss-2014b-Python-2.7.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXext' version = '1.3.2' diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.4.10.eb index 5dc078bfb7..4a8d61c266 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXext' version = '1.3.2' diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-4.1.13.eb index d4bdc634f3..638857be64 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXext' version = '1.3.2' diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-5.3.0.eb index 7cc48ce5f8..c45e32b915 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXext' version = '1.3.2' diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014-Python-2.7.8.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014-Python-2.7.8.eb index 826d747a36..4dd886a4bf 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014-Python-2.7.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXext' version = '1.3.2' diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b.eb index 48c63bb5de..8ff72de9ba 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXext' version = '1.3.2' diff --git a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-goolf-1.4.10.eb index 5010d2aa95..4f783695b3 100644 --- a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXfixes' version = '5.0.1' diff --git a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-4.1.13.eb index 20bf7b1717..9fb8e9f3f9 100644 --- a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXfixes' version = '5.0.1' diff --git a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-5.3.0.eb index 87f1ef0d39..adfb7e8af0 100644 --- a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXfixes' version = '5.0.1' diff --git a/easybuild/easyconfigs/l/libXft/libXft-2.3.2-foss-2014b.eb b/easybuild/easyconfigs/l/libXft/libXft-2.3.2-foss-2014b.eb index 1ef27863e8..7ec93515f1 100644 --- a/easybuild/easyconfigs/l/libXft/libXft-2.3.2-foss-2014b.eb +++ b/easybuild/easyconfigs/l/libXft/libXft-2.3.2-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXft' version = '2.3.2' diff --git a/easybuild/easyconfigs/l/libXft/libXft-2.3.2-intel-2014b.eb b/easybuild/easyconfigs/l/libXft/libXft-2.3.2-intel-2014b.eb index c6cd1518b9..506f6626af 100644 --- a/easybuild/easyconfigs/l/libXft/libXft-2.3.2-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libXft/libXft-2.3.2-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXft' version = '2.3.2' diff --git a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-goolf-1.4.10.eb index 0c7011e540..989ca225d4 100644 --- a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXi' version = '1.7.2' diff --git a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-4.1.13.eb index 7eca8cceb1..f1233c793c 100644 --- a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXi' version = '1.7.2' diff --git a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-5.3.0.eb index a0201585d7..1fc0756462 100644 --- a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXi' version = '1.7.2' diff --git a/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-foss-2014b.eb b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-foss-2014b.eb index db2bef5596..a4be0e47a6 100644 --- a/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-foss-2014b.eb +++ b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXinerama' version = '1.1.3' diff --git a/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2014b.eb b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2014b.eb index a36d70172e..2b1ca0f1ab 100644 --- a/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXinerama' version = '1.1.3' diff --git a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-goolf-1.4.10.eb index fbf39423f6..8db3290cf3 100644 --- a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXmu' version = '1.1.2' diff --git a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-4.1.13.eb index 75249d51b9..5ab7c61a44 100644 --- a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXmu' version = '1.1.2' diff --git a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-5.3.0.eb index 80f4b6f066..df5f4eeafa 100644 --- a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXmu' version = '1.1.2' diff --git a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.4.10.eb index 2f8d991632..b54fb5d0e0 100644 --- a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXp' version = '1.0.2' diff --git a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-4.1.13.eb index 65798889ce..aafb0c8966 100644 --- a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXp' version = '1.0.2' diff --git a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-5.3.0.eb index 406fdd8a08..2adf08884b 100644 --- a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXp' version = '1.0.2' diff --git a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-goolf-1.4.10.eb index 9f8a24e641..0840f6e06d 100644 --- a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXpm' version = '3.5.11' diff --git a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-4.1.13.eb index d0a5514f82..076cc39edb 100644 --- a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXpm' version = '3.5.11' diff --git a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-5.3.0.eb index dcea15ec39..5bb46ff15c 100644 --- a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXpm' version = '3.5.11' diff --git a/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-foss-2014b.eb b/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-foss-2014b.eb index 7372fb8cda..778cd1670c 100644 --- a/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-foss-2014b.eb +++ b/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXrender' version = '0.9.8' diff --git a/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-intel-2014b.eb b/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-intel-2014b.eb index 3c6f25ff46..fe8ecdca33 100644 --- a/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libXrender/libXrender-0.9.8-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXrender' version = '0.9.8' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-goolf-1.4.10.eb index df76b64d5e..0a3d6df938 100644 --- a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXt' version = '1.1.4' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-4.1.13.eb index b713972597..0419ecbed2 100644 --- a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXt' version = '1.1.4' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-5.3.0.eb index 0a3a7d2857..978dd4006b 100644 --- a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXt' version = '1.1.4' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2014b.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2014b.eb index 359a5cb903..f903c01872 100644 --- a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libXt' version = '1.1.4' diff --git a/easybuild/easyconfigs/l/libcircle/libcircle-0.20-rc.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libcircle/libcircle-0.20-rc.1-goolf-1.4.10.eb index 4d2aa113f3..0a754ead09 100644 --- a/easybuild/easyconfigs/l/libcircle/libcircle-0.20-rc.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libcircle/libcircle-0.20-rc.1-goolf-1.4.10.eb @@ -7,6 +7,8 @@ # Authors: Petar Forai # ---------------------------------------------------------------------------- +easyblock = 'ConfigureMake' + name = 'libcircle' version = '0.2.0-rc.1' diff --git a/easybuild/easyconfigs/l/libcircle/libcircle-0.20-rc.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libcircle/libcircle-0.20-rc.1-ictce-5.3.0.eb index e357b55e6e..b03276694b 100644 --- a/easybuild/easyconfigs/l/libcircle/libcircle-0.20-rc.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libcircle/libcircle-0.20-rc.1-ictce-5.3.0.eb @@ -7,6 +7,8 @@ # Authors: Petar Forai # ---------------------------------------------------------------------------- +easyblock = 'ConfigureMake' + name = 'libcircle' version = '0.2.0-rc.1' diff --git a/easybuild/easyconfigs/l/libctl/libctl-3.2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libctl/libctl-3.2.1-goalf-1.1.0-no-OFED.eb index 4793aadab2..c9f79a726b 100644 --- a/easybuild/easyconfigs/l/libctl/libctl-3.2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libctl/libctl-3.2.1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libctl' version = '3.2.1' diff --git a/easybuild/easyconfigs/l/libctl/libctl-3.2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libctl/libctl-3.2.1-goolf-1.4.10.eb index c6329bbafe..e765208e8d 100644 --- a/easybuild/easyconfigs/l/libctl/libctl-3.2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libctl/libctl-3.2.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libctl' version = '3.2.1' diff --git a/easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-4.0.6.eb index f9f2863718..cd7968e31d 100644 --- a/easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libctl' version = '3.2.1' diff --git a/easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-5.3.0.eb index ff25be499b..d73a512934 100644 --- a/easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libctl/libctl-3.2.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libctl' version = '3.2.1' diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goalf-1.1.0-no-OFED.eb index f94fb7136d..5c7544aa88 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libdrm' version = '2.4.27' diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goolf-1.4.10.eb index c8502e8a6a..e4bdd39b89 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libdrm' version = '2.4.27' diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.0.6.eb index eeb07a7121..d970534cf1 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libdrm' version = '2.4.27' diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.1.13.eb index b3c4277670..844b065646 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libdrm' version = '2.4.27' diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.3.0.eb index b8d0724ab7..e1a66cadcc 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libdrm' version = '2.4.27' diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.5.0.eb index 0dc747111b..1e464e3679 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libdrm' version = '2.4.27' diff --git a/easybuild/easyconfigs/l/libevent/libevent-2.0.21-intel-2014b.eb b/easybuild/easyconfigs/l/libevent/libevent-2.0.21-intel-2014b.eb index 76c331f19f..682b29be82 100644 --- a/easybuild/easyconfigs/l/libevent/libevent-2.0.21-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libevent/libevent-2.0.21-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libevent' version = '2.0.21' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.11-gmpolf-1.4.8.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.11-gmpolf-1.4.8.eb index 0c3d74c035..11a54b8c7c 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.11-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.11-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.11' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.11-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.11-goalf-1.1.0-no-OFED.eb index 8ea7a2f64c..c6052a9f00 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.11-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.11-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.11' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.11-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.11-goolf-1.4.10.eb index f4504554c3..31080ed707 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.11-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.11-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.11' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.11-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.11-ictce-4.0.6.eb index fd11c9cdc0..6daa2b6eea 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.11-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.11-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.11' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-gmpolf-1.4.8.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-gmpolf-1.4.8.eb index c6b9fc165b..b473d6a98f 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.13' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goalf-1.1.0-no-OFED.eb index d9a287357f..8b17c8f332 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.13' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-gompi-1.4.12-no-OFED.eb index d739b39a04..792dc25227 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-gompi-1.4.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.13' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goolf-1.4.10.eb index 613a185859..ce63e78de6 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.13' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goolf-1.5.14.eb index 71e68ead43..9244693aa3 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-goolf-1.5.14.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.13' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.0.6.eb index 8f8f4182b7..01613ab7e5 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.13' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.1.13.eb index 8feab385c4..95d5034585 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.13' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.2.0.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.2.0.eb index 402c182ac9..6a631aa3d4 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.13' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.3.0.eb index d19893fd6b..6b6b7b31c3 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.0.13' diff --git a/easybuild/easyconfigs/l/libgd/libgd-2.1.0-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libgd/libgd-2.1.0-ictce-5.5.0.eb index b77755a159..610b070a4f 100644 --- a/easybuild/easyconfigs/l/libgd/libgd-2.1.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libgd/libgd-2.1.0-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libgd' version = '2.1.0' diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb index 8e339f64c1..b7b2e2fbc5 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'libgtextutils' version = '0.6.1' diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb index 4f376cb0ac..4dccc15fd5 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'libgtextutils' version = '0.6.1' diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb index c4ac97ff26..0ac17949f1 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'libgtextutils' version = '0.6.1' diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb index 25ad274b56..dc2903782e 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'libgtextutils' version = '0.6.1' diff --git a/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.6.3.eb b/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.6.3.eb index 2181ebf0c7..14ee7cd15e 100644 --- a/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.6.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libibmad' version = '1.3.9' diff --git a/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.7.2.eb b/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.7.2.eb index 108bae19bc..a5286010d3 100644 --- a/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libibmad' version = '1.3.9' diff --git a/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.6.3.eb b/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.6.3.eb index 7a774cf33f..36ad13885d 100644 --- a/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.6.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libibumad' version = '1.3.8' diff --git a/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.7.2.eb b/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.7.2.eb index 7145aed692..f280d555fc 100644 --- a/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libibumad' version = '1.3.8' diff --git a/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.6.3.eb b/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.6.3.eb index 604404ff18..a0166f7648 100644 --- a/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.6.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libibverbs' version = '1.1.4' diff --git a/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.7.2.eb b/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.7.2.eb index 753ef25944..23eae1bc76 100644 --- a/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libibverbs' version = '1.1.4' diff --git a/easybuild/easyconfigs/l/libidn/libidn-1.27-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libidn/libidn-1.27-goalf-1.1.0-no-OFED.eb index 0d0a354c13..3f9b81c869 100644 --- a/easybuild/easyconfigs/l/libidn/libidn-1.27-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libidn/libidn-1.27-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libidn' version = '1.27' diff --git a/easybuild/easyconfigs/l/libidn/libidn-1.27-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libidn/libidn-1.27-goolf-1.4.10.eb index ce8871841a..21cc8fb526 100644 --- a/easybuild/easyconfigs/l/libidn/libidn-1.27-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libidn/libidn-1.27-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libidn' version = '1.27' diff --git a/easybuild/easyconfigs/l/libidn/libidn-1.27-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libidn/libidn-1.27-ictce-5.3.0.eb index cc1ae26187..0dd7cf48bb 100644 --- a/easybuild/easyconfigs/l/libidn/libidn-1.27-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libidn/libidn-1.27-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libidn' version = '1.27' diff --git a/easybuild/easyconfigs/l/libidn/libidn-1.29-intel-2014b.eb b/easybuild/easyconfigs/l/libidn/libidn-1.29-intel-2014b.eb index 25e49cc845..666949d901 100644 --- a/easybuild/easyconfigs/l/libidn/libidn-1.29-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libidn/libidn-1.29-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libidn' version = '1.29' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-ictce-4.1.13.eb index 60866e8337..7289b72f8d 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libjpeg-turbo' version = '1.3.0' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-intel-2014b.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-intel-2014b.eb index 3b4eab1867..97496de156 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libjpeg-turbo' version = '1.3.0' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-5.5.0.eb index 2269cdd843..f611dfc78d 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libjpeg-turbo' version = '1.3.1' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.2.5.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.2.5.eb index 7149981ff2..ecec75e230 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.2.5.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libjpeg-turbo' version = '1.3.1' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.3.5.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.3.5.eb index 81530e5756..f987aae4d5 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.3.5.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.3.5.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libjpeg-turbo' version = '1.3.1' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014b.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014b.eb index 7528112af4..70fac12c9e 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libjpeg-turbo' version = '1.3.1' diff --git a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-goalf-1.1.0-no-OFED.eb index 2ad36b3352..f753b8b744 100644 --- a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libmatheval' version = '1.1.8' diff --git a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-goolf-1.4.10.eb index 872932fd48..f514350317 100644 --- a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libmatheval' version = '1.1.8' diff --git a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-4.0.6.eb index fe87afca3e..a8ede07097 100644 --- a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libmatheval' version = '1.1.8' diff --git a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-5.3.0.eb index f0147955d4..9c911d9a3d 100644 --- a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.8-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libmatheval' version = '1.1.8' diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-GCC-4.7.2.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-GCC-4.7.2.eb index 354853cbff..6ac9b7d5c3 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpciaccess' version = '0.13.1' diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goalf-1.1.0-no-OFED.eb index 0be9a759df..a021127537 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpciaccess' version = '0.13.1' diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goolf-1.4.10.eb index 66801ecc40..11090d4b7a 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpciaccess' version = '0.13.1' diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-4.0.6.eb index 98be12dbee..f66aff6454 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpciaccess' version = '0.13.1' diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-4.1.13.eb index 7a0265479b..f03e2b9b60 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpciaccess' version = '0.13.1' diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.3.0.eb index 07f21c7dfb..33c34a406a 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpciaccess' version = '0.13.1' diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.5.0.eb index f226c0aa76..7e3d115240 100644 --- a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.1-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpciaccess' version = '0.13.1' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-goalf-1.1.0-no-OFED.eb index cc4894fdf1..8ee0aa4637 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.10' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-goolf-1.4.10.eb index f95a1d02fd..8bad0c4e87 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.10' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-3.2.2.u3.eb index 2ee1bbddfc..3e6f94792d 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.10' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-4.0.6.eb index a975b4c5ac..0eb2b15e90 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.10' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-5.3.0.eb index dfbd0cdc9f..a6b23b41f4 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.10-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.10' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-goalf-1.1.0-no-OFED.eb index 6210a640c2..7838b73a7f 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.11' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-goolf-1.4.10.eb index b90c8fd0e8..da5e44bbae 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.11' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-3.2.2.u3.eb index 17cd13e717..40d2ceab46 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.11' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-4.0.6.eb index 97ed1ebf8d..c256e56b1a 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.11' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-5.3.0.eb index c8567a9557..3e4f276b25 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.11-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.11' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goalf-1.1.0-no-OFED.eb index f261e84daa..d8f3d31c2c 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.13' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goolf-1.4.10.eb index 0e9068b97f..848af67ab2 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.13' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.10.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.10.eb index 7a084f07e7..79eddf2537 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.10.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.13' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.6.eb index c6aa4a8a5b..fbcb722f70 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.13' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.1.13.eb index 4b24a56c5a..cf81907b25 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.13' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-5.3.0.eb index 0ff4698c7c..615cbae8c6 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.13' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goalf-1.1.0-no-OFED.eb index d868921c8a..3b118ba806 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.14' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goolf-1.4.10.eb index 5331872888..9e16b44ccb 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.14' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-3.2.2.u3.eb index 4e1e863110..c67d2249d5 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.14' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-4.1.13.eb index 800a4ad69c..dfc6f1d804 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.14' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-5.3.0.eb index 4ef2e44f4a..93ce285e54 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.14' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-iqacml-3.7.3.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-iqacml-3.7.3.eb index 48105ee7c0..a7a887af09 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.5.14' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.10-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.10-ictce-5.5.0.eb index 6414a45704..9214a19f56 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.10-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.10-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.10' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-foss-2014b.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-foss-2014b.eb index 3487259a8e..ce0e1a5541 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-foss-2014b.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.12' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-5.5.0.eb index 4edadad52e..b0cfb6ad7f 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.12' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-6.2.5.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-6.2.5.eb index fb7bf4c880..13237337d2 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-6.2.5.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.12' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-6.3.5.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-6.3.5.eb index 090e02dea5..ba247c4f65 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-6.3.5.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-ictce-6.3.5.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.12' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-intel-2014b.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-intel-2014b.eb index 452a42cbb4..17246d9798 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.12' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-goalf-1.1.0-no-OFED.eb index 45172f31b7..e9f4060335 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.2' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-goolf-1.4.10.eb index 9a8c1d6f78..2848d5b244 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.2' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.0.6.eb index 55682f57ec..d70786f9cb 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.2' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.1.13.eb index e2ad25290c..e9bb80bc57 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.2' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-5.3.0.eb index 97d934fff2..20b9332c8c 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.2' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-4.1.13-zlib-1.2.8.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-4.1.13-zlib-1.2.8.eb index 5cac7b92a2..52efefe84e 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-4.1.13-zlib-1.2.8.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-4.1.13-zlib-1.2.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.3' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-4.1.13.eb index 7cb1ac2c09..3e2786dec3 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.3' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0-zlib-1.2.8.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0-zlib-1.2.8.eb index fb9f32baf9..f3ae59c924 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0-zlib-1.2.8.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0-zlib-1.2.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.3' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0.eb index 2701d0d2b6..da2685ac60 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.3' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.6-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.6-goolf-1.4.10.eb index 3e4fd3d652..d3522e5cc3 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.6-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.6' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-4.1.13.eb index 3abbc07090..1dd7c7b388 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.6' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.3.0.eb index 150ca35db4..4d72b05a89 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.6' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.5.0.eb index cc63b4067d..fdec216e86 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.6-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.6' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.9-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.9-ictce-5.5.0.eb index 37cc1311ee..193b03bcac 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.6.9-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.9-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpng' version = '1.6.9' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb index 94b729f502..9e928c536d 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpthread-stubs' version = '0.3' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goalf-1.1.0-no-OFED.eb index ac559749a6..f829f915ab 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpthread-stubs' version = '0.3' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goolf-1.4.10.eb index 6fa4da3bec..1b25208919 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpthread-stubs' version = '0.3' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.0.6.eb index c69f944cdb..9f980a8c82 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpthread-stubs' version = '0.3' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.1.13.eb index fe3881a548..f73ab22a6e 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpthread-stubs' version = '0.3' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.3.0.eb index b441c48f48..1c780648c6 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpthread-stubs' version = '0.3' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.5.0.eb index a3a45bf5bf..718b266c0a 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpthread-stubs' version = '0.3' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb index 2375946691..46dee523f9 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libpthread-stubs' version = '0.3' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmpolf-1.1.6.eb index ea86f44110..8d1588dc4c 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmpolf-1.1.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.1.12rc1.eb index 845fa3e7fa..1c24eeef03 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.1.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.2.7.eb index 49c0baecf1..bdb329077c 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.2.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgoolf-1.1.7.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgoolf-1.1.7.eb index 07ea263092..3e8727cebd 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgoolf-1.1.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmpolf-1.4.8.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmpolf-1.4.8.eb index aaa76f5f77..31ea04d7f7 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12.eb index fcb196f792..e784ea0d02 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12rc1.eb index e0e2d5c7fa..b7bbfc8f3f 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.1.0-no-OFED.eb index 066765bca3..e797af8cff 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.5.12-no-OFED.eb index 146a8e9944..a5bde707ae 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.5.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.4.12-no-OFED.eb index db9397866d..9fcd98edf6 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.4.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.4.10.eb index e835cd63d6..c749a738d5 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.5.14.eb index 9b0767d511..8aa471e23a 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.5.14.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.10.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.10.eb index 7a1a0c8b8b..b7c9420719 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.10.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.6.eb index 7cbbcd5ae7..cbeb9a570e 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.1.13.eb index af015cd665..665c07b80c 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.2.0.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.2.0.eb index 169a857dc2..3740f0ff9b 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.3.0.eb index af7f561821..53abae746a 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.5.0.eb index 1c9a199f1b..61dd8ec4a5 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iomkl-4.6.13.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iomkl-4.6.13.eb index ac364c1247..77678dc0f2 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iomkl-4.6.13.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iomkl-4.6.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-3.7.3.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-3.7.3.eb index 446d0f52d7..bd735f0ac1 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-4.4.13.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-4.4.13.eb index 4833ff1469..ea4961cd72 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-4.4.13.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-4.4.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.2' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.8.2.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.8.2.eb index 06b2762862..c97399ea34 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.3' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2014b.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2014b.eb index 8539e47184..51c99a34d4 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2014b.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.3' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.2.5.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.2.5.eb index e7da958cd0..61c26fbcf1 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.2.5.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.3' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.3.5.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.3.5.eb index 8f0625d158..b01870bd7e 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.3.5.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.3.5.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.3' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-7.1.2.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-7.1.2.eb index 3235b9e378..79d3e499ee 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-7.1.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.3' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014b.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014b.eb index f9d1fd8b42..9eac396876 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libreadline' version = '6.3' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.2.eb index 7a90940060..aaf3b343c5 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libtool' version = '2.4.2' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goalf-1.1.0-no-OFED.eb index 175e451374..d8ba582ada 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libtool' version = '2.4.2' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goolf-1.4.10.eb index f40fb3df88..d75220ff03 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libtool' version = '2.4.2' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.0.6.eb index ff247a01fc..cf4ec0fba3 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libtool' version = '2.4.2' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.1.13.eb index 5002055bd1..a9c0566710 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libtool' version = '2.4.2' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.3.0.eb index 04bf2df64f..e54f9a35f1 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libtool' version = '2.4.2' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.5.0.eb index 661b17bf01..d66bc90859 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libtool' version = '2.4.2' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2014b.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2014b.eb index b12d107432..3ba9d4738d 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libtool' version = '2.4.2' diff --git a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb index 3cae554475..4ae4db7879 100644 --- a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'libungif' version = '4.1.4' diff --git a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb index cc64728498..51b4352aa5 100644 --- a/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libungif/libungif-4.1.4-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'libungif' version = '4.1.4' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goalf-1.1.0-no-OFED.eb index 7c980a4ecf..f4fd06b4bf 100644 --- a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libunistring' version = '0.9.3' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goolf-1.4.10.eb index ac85cc4834..5a3eb453b7 100644 --- a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libunistring' version = '0.9.3' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-4.0.6.eb index 60198552d3..96c55fbfae 100644 --- a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libunistring' version = '0.9.3' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-5.3.0.eb index 638d735185..8f07cb9c8e 100644 --- a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libunistring' version = '0.9.3' diff --git a/easybuild/easyconfigs/l/libunwind/libunwind-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libunwind/libunwind-1.1-goolf-1.4.10.eb index df2b6201e1..957e854ad9 100644 --- a/easybuild/easyconfigs/l/libunwind/libunwind-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libunwind/libunwind-1.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "libunwind" version = "1.1" diff --git a/easybuild/easyconfigs/l/libunwind/libunwind-1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libunwind/libunwind-1.1-ictce-5.3.0.eb index d3931fac83..5059851443 100644 --- a/easybuild/easyconfigs/l/libunwind/libunwind-1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libunwind/libunwind-1.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "libunwind" version = "1.1" diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goalf-1.1.0-no-OFED.eb index 951aa3a605..6d8ba273cc 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.1' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goolf-1.4.10.eb index 4515ef18e7..527700c8cf 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.1' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-4.1.13.eb index 5260edfb18..75f7905299 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.1' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.3.0.eb index 197378d1ba..16b3b34294 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.1' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.5.0.eb index 7b83d19f9b..67b912636d 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.1' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goalf-1.1.0-no-OFED.eb index 0ad38c462e..cb5559a2e4 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.2' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goolf-1.4.10.eb index 342eba4e1a..33d4030161 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.2' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-4.1.13.eb index 3745935062..58b1cd1503 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.2' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb index 9b043454fa..d4a9249a7f 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.2' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.0-intel-2014b.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.0-intel-2014b.eb index 0a0a09854a..d3bacbccff 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.0-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.0-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.2.0' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.10-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-foss-2014b-Python-2.7.8.eb index e021ca6d64..642e8c5309 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.10-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-foss-2014b-Python-2.7.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxcb' version = '1.10' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb index 97a14be2f4..1ae3d3fbc4 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxcb' version = '1.10' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 2b8220d832..c58daba38a 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxcb' version = '1.8' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.4.10-Python-2.7.3.eb index 2f5fe48a09..3be1736940 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.4.10-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxcb' version = '1.8' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.0.6-Python-2.7.3.eb index 954d302dbc..6d757e7d79 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.0.6-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxcb' version = '1.8' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.1.13-Python-2.7.3.eb index 2abcb9f275..09100be56b 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.1.13-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxcb' version = '1.8' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-5.3.0-Python-2.7.3.eb index 174f651302..879b645f96 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-5.3.0-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxcb' version = '1.8' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2014b-Python-2.7.8.eb index ce8c0ef7d7..eca2fdff48 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2014b-Python-2.7.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxcb' version = '1.8' diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-goalf-1.1.0-no-OFED.eb index 5d2945e805..72516b06ea 100644 --- a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxslt' version = '1.1.28' diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-goolf-1.4.10.eb index 2489dde795..36936924d9 100644 --- a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxslt' version = '1.1.28' diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.0.6.eb index 94fcfa9a74..7e80985396 100644 --- a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxslt' version = '1.1.28' diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.1.13.eb index bbdbcf88a1..12e23c3ccd 100644 --- a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxslt' version = '1.1.28' diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-5.3.0.eb index ef74dc3640..90e2d917d4 100644 --- a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxslt' version = '1.1.28' diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb index bbd436416b..c595540a20 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'libyaml' version = '0.1.4' diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb index 6ec957bdc2..0e518d9646 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'libyaml' version = '0.1.4' diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb index f3130f6e0f..750f58b2de 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'libyaml' version = '0.1.4' diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED-pinomp.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED-pinomp.eb index 5216f215ac..c2776bf36f 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED-pinomp.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED-pinomp.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'likwid' version = '3.0.0' versionsuffix = '-pinomp' diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED.eb index 4c6139cea2..124ce10648 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'likwid' version = '3.0.0' diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10-pinomp.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10-pinomp.eb index f70acdeb2a..98e3f2bc69 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10-pinomp.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10-pinomp.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'likwid' version = '3.0.0' versionsuffix = '-pinomp' diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10.eb index 8ed665b05e..7008e1d1c4 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'likwid' version = '3.0.0' diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13-pinomp.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13-pinomp.eb index 06ca42b275..a7934235d0 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13-pinomp.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13-pinomp.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'likwid' version = '3.0.0' versionsuffix = '-pinomp' diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13.eb index 06a45c9629..0202739bca 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'likwid' version = '3.0.0' diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0-pinomp.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0-pinomp.eb index 1a6ec52db8..0bcdcea56d 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0-pinomp.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0-pinomp.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'likwid' version = '3.0.0' versionsuffix = '-pinomp' diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0.eb index d707229b8a..357fb0550d 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'likwid' version = '3.0.0' diff --git a/easybuild/easyconfigs/l/lynx/lynx-2.8.7-goolf-1.4.10.eb b/easybuild/easyconfigs/l/lynx/lynx-2.8.7-goolf-1.4.10.eb index 272a75abdf..e70401308c 100644 --- a/easybuild/easyconfigs/l/lynx/lynx-2.8.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/lynx/lynx-2.8.7-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'lynx' version = '2.8.7' diff --git a/easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-4.1.13.eb b/easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-4.1.13.eb index 85a2cf017b..192056f471 100644 --- a/easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'lynx' version = '2.8.7' diff --git a/easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-5.3.0.eb b/easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-5.3.0.eb index 8935b8374f..2b02e64ab0 100644 --- a/easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/lynx/lynx-2.8.7-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'lynx' version = '2.8.7' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.1.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.1.3.eb index a48c5487ad..cb03585278 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.1.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.1.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.2.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.2.3.eb index 9bf8740cc6..41439b8903 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.2.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ClangGCC-1.2.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.6.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.6.3.eb index 607e6bd0b5..9f33e2cf1a 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.6.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.2.eb index 0560144686..ac895a813e 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.3.eb index 5bb719ac95..a3035c0940 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.1.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.1.eb index 55cba29b68..a4abda33a9 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.2.eb index b0ab4edf27..608f719296 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-gcccuda-2.6.10.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-gcccuda-2.6.10.eb index 68b005dc52..26579d3df8 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-gcccuda-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-gmacml-1.7.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-gmacml-1.7.0.eb index 81a49cdbe3..0f887ab31a 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-gmacml-1.7.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-gmacml-1.7.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-goalf-1.1.0-no-OFED.eb index 410fbc75ce..9ced23daf9 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.4.10.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.4.10.eb index d66d8b9e4e..f3e91d0941 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.5.14.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.5.14.eb index 0e2107c167..b2b4474146 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.5.14.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-3.2.2.u3.eb index 925e8c70e6..e48cb5fc86 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.0.6.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.0.6.eb index c344494bc3..f8a4295842 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.1.13.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.1.13.eb index 3c8fbd6746..be4bfead9b 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.3.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.3.0.eb index 7915e22d2e..c647012bf6 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb index 07b38b0359..a7f7a66b5b 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-intel-2014b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-intel-2014b.eb index aeccb402a8..729b469bf9 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-intel-2014b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-iqacml-3.7.3.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-iqacml-3.7.3.eb index 98f82e41c4..7e58df6535 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16.eb index 50af850a5a..749164bc5e 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.16' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb index a7a5756ce6..c2e9e52426 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.17' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb index b122fe2d09..e8d95f1f54 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.17' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb index c9301b5c6d..68b3d851f6 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-ictce-7.1.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.17' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb index 6788ddd966..d6a8a6e705 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'M4' version = '1.4.17' diff --git a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-goolf-1.4.10-with-extensions.eb b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-goolf-1.4.10-with-extensions.eb index 0fd4f0bb04..66ff95669d 100644 --- a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-goolf-1.4.10-with-extensions.eb +++ b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-goolf-1.4.10-with-extensions.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'MAFFT' version = '7.130' versionsuffix = '-with-extensions' diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb index e4351bddcf..54d1c4d20b 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MCL' version = '12.135' diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb index 46203ea8f3..0b7a65ab00 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MCL' version = '12.135' diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb index 97c6ded6bd..b2dec05ab5 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MCL' version = '12.135' diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb index 658c32d2f0..26b2a9bb86 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MCL' version = '12.135' diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb index ab9fb8348f..b84227a558 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MCL' version = '12.135' diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb index 75485425ce..4a37b2243d 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MEME' version = '4.8.0' diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb index 95b686df33..c2f466b38e 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MEME' version = '4.8.0' diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb index 25554b2840..2079802769 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MEME' version = '4.8.0' diff --git a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb index 50a0fd2812..e039fb1fe5 100644 --- a/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MEME/MEME-4.8.0-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'MEME' version = '4.8.0' diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-2.4.2.eb b/easybuild/easyconfigs/m/MPFR/MPFR-2.4.2.eb index a99cba2db6..6de1d0207b 100644 --- a/easybuild/easyconfigs/m/MPFR/MPFR-2.4.2.eb +++ b/easybuild/easyconfigs/m/MPFR/MPFR-2.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'MPFR' version = '2.4.2' diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goalf-1.1.0-no-OFED.eb index a29c14eefa..e1e468ad29 100644 --- a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'MPFR' version = '3.1.0' diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goolf-1.4.10.eb index a4dac3e243..ea4e59e58b 100644 --- a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'MPFR' version = '3.1.0' diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-4.0.6.eb index 43031f697f..074ca29907 100644 --- a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'MPFR' version = '3.1.0' diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-5.3.0.eb index 735f8bd0ac..501dc18899 100644 --- a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'MPFR' version = '3.1.0' diff --git a/easybuild/easyconfigs/m/MPICH/MPICH-3.0.3-ClangGCC-1.1.3.eb b/easybuild/easyconfigs/m/MPICH/MPICH-3.0.3-ClangGCC-1.1.3.eb index 971d6adf6f..ecc1ac4836 100644 --- a/easybuild/easyconfigs/m/MPICH/MPICH-3.0.3-ClangGCC-1.1.3.eb +++ b/easybuild/easyconfigs/m/MPICH/MPICH-3.0.3-ClangGCC-1.1.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'MPICH' version = '3.0.3' diff --git a/easybuild/easyconfigs/m/MPICH2/MPICH2-1.1-GCC-4.8.1.eb b/easybuild/easyconfigs/m/MPICH2/MPICH2-1.1-GCC-4.8.1.eb index 9259eb9514..d8dc782b07 100644 --- a/easybuild/easyconfigs/m/MPICH2/MPICH2-1.1-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/m/MPICH2/MPICH2-1.1-GCC-4.8.1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'MPICH2' version = '1.1' diff --git a/easybuild/easyconfigs/m/MPICH2/MPICH2-3.0.4-GCC-4.8.1.eb b/easybuild/easyconfigs/m/MPICH2/MPICH2-3.0.4-GCC-4.8.1.eb index bccfcd087b..7d97e1c6c3 100644 --- a/easybuild/easyconfigs/m/MPICH2/MPICH2-3.0.4-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/m/MPICH2/MPICH2-3.0.4-GCC-4.8.1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'MPICH2' version = '3.0.4' diff --git a/easybuild/easyconfigs/m/Meep/Meep-1.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/Meep/Meep-1.2-goalf-1.1.0-no-OFED.eb index c6d4999624..c4caf8f33f 100644 --- a/easybuild/easyconfigs/m/Meep/Meep-1.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/Meep/Meep-1.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Meep' version = '1.2' diff --git a/easybuild/easyconfigs/m/Meep/Meep-1.2-goolf-1.4.10.eb b/easybuild/easyconfigs/m/Meep/Meep-1.2-goolf-1.4.10.eb index 7b27d95b42..9c0e3d28b0 100644 --- a/easybuild/easyconfigs/m/Meep/Meep-1.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/Meep/Meep-1.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Meep' version = '1.2' diff --git a/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-4.0.6.eb b/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-4.0.6.eb index 7b473e1b0b..99b133b3f5 100644 --- a/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Meep' version = '1.2' diff --git a/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-5.3.0.eb b/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-5.3.0.eb index 98db62a6c1..67e5d881fb 100644 --- a/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Meep' version = '1.2' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb index c9ba308da7..11985c41cf 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Mesa' version = '7.11.2' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goolf-1.4.10-Python-2.7.3.eb index 583a17b53a..0efe09a06f 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goolf-1.4.10-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Mesa' version = '7.11.2' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.0.6-Python-2.7.3.eb index b9ae048b44..7c14a34545 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.0.6-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Mesa' version = '7.11.2' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.1.13-Python-2.7.3.eb index 71c7f90540..da570c9a0f 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.1.13-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Mesa' version = '7.11.2' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.3.0-Python-2.7.3.eb index 6886fc4ec1..fc5542e2ee 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.3.0-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Mesa' version = '7.11.2' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.5.0-Python-2.7.6.eb index 9c102a94c7..3534cda3ad 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.5.0-Python-2.7.6.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.5.0-Python-2.7.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Mesa' version = '7.11.2' diff --git a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-goolf-1.4.10.eb index 26c1ca2975..ec4e0d99c1 100644 --- a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Mesquite' version = '2.3.0' diff --git a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-4.1.13.eb b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-4.1.13.eb index 1de9a96e7a..adff82b8cc 100644 --- a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Mesquite' version = '2.3.0' diff --git a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-5.3.0.eb index 81db895120..e3afd14594 100644 --- a/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/Mesquite/Mesquite-2.3.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Mesquite' version = '2.3.0' diff --git a/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb b/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb index 3a389bc529..ef981bb4df 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-GCC-4.8.2.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'make' version = '3.82' diff --git a/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb b/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb index 0b0b5e2f5e..e13659096e 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'make' version = '3.82' diff --git a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb index e44bdfcabc..7ab215e130 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'make' version = '3.82' diff --git a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb index 15e70c67a2..256925f8ab 100644 --- a/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/make/make-3.82-ictce-5.5.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'make' version = '3.82' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goalf-1.1.0-no-OFED.eb index aa4a55a563..10d8f0fdb3 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'makedepend' version = '1.0.4' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goolf-1.4.10.eb index 973833a0e5..ff1abe6893 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'makedepend' version = '1.0.4' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-3.2.2.u3.eb index 60620af7c7..790eefcde4 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'makedepend' version = '1.0.4' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.0.6.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.0.6.eb index 0902707f38..94b2544e16 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'makedepend' version = '1.0.4' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.1.13.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.1.13.eb index 8141aa9b28..c0f71c373d 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'makedepend' version = '1.0.4' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.3.0.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.3.0.eb index f154bb86ea..39683b811c 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'makedepend' version = '1.0.4' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.5.0.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.5.0.eb index 93a682ba0b..873b6391a2 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'makedepend' version = '1.0.4' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-iqacml-3.7.3.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-iqacml-3.7.3.eb index a1fe1ab4f8..34e982133e 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'makedepend' version = '1.0.4' diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb index 3ada34b61a..ecfb57dda3 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'mc' version = '4.6.1' diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb index 30bfb15e5c..438ec80d0e 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'mc' version = '4.6.1' diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb index 035a464a69..ec94a5a333 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'mc' version = '4.6.1' diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb index 16db259e01..f390a24559 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'mc' version = '4.6.1' diff --git a/easybuild/easyconfigs/m/mcpp/mcpp-2.7.2-GCC-4.7.2.eb b/easybuild/easyconfigs/m/mcpp/mcpp-2.7.2-GCC-4.7.2.eb index 5a89179795..2815744988 100644 --- a/easybuild/easyconfigs/m/mcpp/mcpp-2.7.2-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/m/mcpp/mcpp-2.7.2-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'mcpp' version = '2.7.2' diff --git a/easybuild/easyconfigs/m/motif/motif-2.3.4-goolf-1.4.10.eb b/easybuild/easyconfigs/m/motif/motif-2.3.4-goolf-1.4.10.eb index 2acf37eefa..6243a59beb 100644 --- a/easybuild/easyconfigs/m/motif/motif-2.3.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/motif/motif-2.3.4-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'motif' version = '2.3.4' diff --git a/easybuild/easyconfigs/m/motif/motif-2.3.4-ictce-4.1.13.eb b/easybuild/easyconfigs/m/motif/motif-2.3.4-ictce-4.1.13.eb index be6b381189..735f258dfa 100644 --- a/easybuild/easyconfigs/m/motif/motif-2.3.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/motif/motif-2.3.4-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'motif' version = '2.3.4' diff --git a/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2014b.eb b/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2014b.eb index bd3a14e319..49796d51b9 100644 --- a/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2014b.eb +++ b/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'motif' version = '2.3.4' diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb index 563ed3421b..dd7cd82090 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'mpiBLAST' version = '1.6.0' diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb index e619b4f389..7996ccccb1 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'mpiBLAST' version = '1.6.0' diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb index f5db8a5012..ed6214c594 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'mpiBLAST' version = '1.6.0' diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb index 1d62a7dcd2..61e20d4024 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'mpiBLAST' version = '1.6.0' diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb index 70d4454ccd..7a012e8c9b 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'mpiBLAST' version = '1.6.0' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb index 4e5d353f96..ce0c799863 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'NASM' version = '2.07' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb index 561540d3fa..d17113cb06 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'NASM' version = '2.07' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb index 5f16618a92..261d1e65aa 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'NASM' version = '2.07' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb index 3b76ca0f63..ec4bc1b519 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-4.1.13.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'NASM' version = '2.07' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb index 32ccd897a8..6c053969c2 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'NASM' version = '2.07' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb index 31301a6e46..f361a2932f 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-ictce-5.5.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'NASM' version = '2.07' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb index 0be92bc64e..777c4695fd 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.07-intel-2014b.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'NASM' version = '2.07' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb index 3b1cfac77d..d0c5c529db 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.2.5.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'NASM' version = '2.11.05' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb index 4bc522d420..8210b35b66 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-ictce-6.3.5.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'NASM' version = '2.11.05' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb index a70c2bc669..940cf3e83b 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014b.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'NASM' version = '2.11.05' diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb index 201a8dbdc9..c5936a51c7 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'NCBI-Toolkit' version = '9.0.0' diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb index 29a1febe39..b889e93516 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'NCBI-Toolkit' version = '9.0.0' diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb index b852c824c9..af1e8856cf 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'NCBI-Toolkit' version = '9.0.0' diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb index aba8fddd6a..07e2cab7c0 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-04.html ## +easyblock = 'ConfigureMake' + name = 'nano' version = '2.2.6' diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb index 2db6a9bb73..b4bf60ef3c 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-04.html ## +easyblock = 'ConfigureMake' + name = 'nano' version = '2.2.6' diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb index 6c069cf2fb..2a997d6bdf 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-04.html ## +easyblock = 'ConfigureMake' + name = 'nano' version = '2.2.6' diff --git a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb index d96c22866b..1ff272d5d5 100644 --- a/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/nano/nano-2.2.6-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-04.html ## +easyblock = 'ConfigureMake' + name = 'nano' version = '2.2.6' diff --git a/easybuild/easyconfigs/n/ncview/ncview-2.1.2-ictce-4.1.13.eb b/easybuild/easyconfigs/n/ncview/ncview-2.1.2-ictce-4.1.13.eb index dddea72fda..a75fd151a4 100644 --- a/easybuild/easyconfigs/n/ncview/ncview-2.1.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/n/ncview/ncview-2.1.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ncview' version = '2.1.2' diff --git a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-goolf-1.4.10.eb b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-goolf-1.4.10.eb index a86cd78df6..b46d95de45 100644 --- a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'netCDF-C++' version = '4.2' diff --git a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13-mt.eb b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13-mt.eb index df031c2880..57f1d3e4bb 100644 --- a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13-mt.eb +++ b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13-mt.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'netCDF-C++' version = '4.2' versionsuffix = '-mt' diff --git a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13.eb b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13.eb index 7c205aa876..7a7c4b81bc 100644 --- a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'netCDF-C++' version = '4.2' diff --git a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-5.3.0.eb b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-5.3.0.eb index 1f5199fe78..3b4f3e5332 100644 --- a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'netCDF-C++' version = '4.2' diff --git a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-iqacml-3.7.3.eb b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-iqacml-3.7.3.eb index f02f2181e4..de008bf235 100644 --- a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'netCDF-C++' version = '4.2' diff --git a/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.2.1-intel-2014b.eb b/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.2.1-intel-2014b.eb index 861a9f86c0..c46c081007 100644 --- a/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.2.1-intel-2014b.eb +++ b/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.2.1-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'netCDF-C++4' version = '4.2.1' diff --git a/easybuild/easyconfigs/n/netloc/netloc-0.5-GCC-4.8.3.eb b/easybuild/easyconfigs/n/netloc/netloc-0.5-GCC-4.8.3.eb index a765c5c17e..025be1d81d 100644 --- a/easybuild/easyconfigs/n/netloc/netloc-0.5-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/n/netloc/netloc-0.5-GCC-4.8.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'netloc' version = "0.5" diff --git a/easybuild/easyconfigs/n/netloc/netloc-0.5-gcccuda-2.6.10.eb b/easybuild/easyconfigs/n/netloc/netloc-0.5-gcccuda-2.6.10.eb index f570d5694f..6b5126f478 100644 --- a/easybuild/easyconfigs/n/netloc/netloc-0.5-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/n/netloc/netloc-0.5-gcccuda-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'netloc' version = "0.5" diff --git a/easybuild/easyconfigs/n/nettle/nettle-2.6-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/nettle/nettle-2.6-goalf-1.1.0-no-OFED.eb index 3761976262..03cdd193de 100644 --- a/easybuild/easyconfigs/n/nettle/nettle-2.6-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/nettle/nettle-2.6-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'nettle' version = '2.6' diff --git a/easybuild/easyconfigs/n/nettle/nettle-2.6-goolf-1.4.10.eb b/easybuild/easyconfigs/n/nettle/nettle-2.6-goolf-1.4.10.eb index af8957541d..fbf0448f8d 100644 --- a/easybuild/easyconfigs/n/nettle/nettle-2.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/nettle/nettle-2.6-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'nettle' version = '2.6' diff --git a/easybuild/easyconfigs/n/nodejs/nodejs-0.10.24-goolf-1.4.10.eb b/easybuild/easyconfigs/n/nodejs/nodejs-0.10.24-goolf-1.4.10.eb index 9c91472a53..51c10e822d 100644 --- a/easybuild/easyconfigs/n/nodejs/nodejs-0.10.24-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/nodejs/nodejs-0.10.24-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'nodejs' version = '0.10.24' diff --git a/easybuild/easyconfigs/n/ns/ns-2.35-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/ns/ns-2.35-goalf-1.1.0-no-OFED.eb index d014d23c56..174f9bf7e2 100644 --- a/easybuild/easyconfigs/n/ns/ns-2.35-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/ns/ns-2.35-goalf-1.1.0-no-OFED.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'ns' version = '2.35' diff --git a/easybuild/easyconfigs/n/ns/ns-2.35-goolf-1.4.10.eb b/easybuild/easyconfigs/n/ns/ns-2.35-goolf-1.4.10.eb index e989070596..057d7763d5 100644 --- a/easybuild/easyconfigs/n/ns/ns-2.35-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/ns/ns-2.35-goolf-1.4.10.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'ns' version = '2.35' diff --git a/easybuild/easyconfigs/n/ns/ns-2.35-ictce-5.3.0.eb b/easybuild/easyconfigs/n/ns/ns-2.35-ictce-5.3.0.eb index cf88a55964..ded8fdd51c 100644 --- a/easybuild/easyconfigs/n/ns/ns-2.35-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/ns/ns-2.35-ictce-5.3.0.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'ns' version = '2.35' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goalf-1.1.0-no-OFED.eb index 62cfc794e1..dbb1640bc1 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'numactl' version = '2.0.8' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb index 1fdbc49464..9dab9a78e3 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'numactl' version = '2.0.8' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-4.1.13.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-4.1.13.eb index 67c84c7319..38e2472e6b 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'numactl' version = '2.0.8' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb index 8138adc156..8d379ac5ac 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'numactl' version = '2.0.8' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.3.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.3.eb index b700d6c7fc..4b76914247 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'numactl' version = '2.0.9' diff --git a/easybuild/easyconfigs/o/O2scl/o2scl-0.913-goolf-1.4.10.eb b/easybuild/easyconfigs/o/O2scl/o2scl-0.913-goolf-1.4.10.eb index 9496f69174..539e278a55 100644 --- a/easybuild/easyconfigs/o/O2scl/o2scl-0.913-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/O2scl/o2scl-0.913-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'o2scl' version = '0.913' diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb index 02076165fe..e3c5f86d83 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = "OCaml" version = "4.01.0" diff --git a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.0.7-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.0.7-gompi-1.4.12-no-OFED.eb index f2754f6da9..0361dfc86a 100644 --- a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.0.7-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.0.7-gompi-1.4.12-no-OFED.eb @@ -6,6 +6,8 @@ # This work is based from experiences from the UNITE project # http://apps.fz-juelich.de/unite/ ## +easyblock = 'ConfigureMake' + name = "OPARI2" version = "1.0.7" diff --git a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.1-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.1-gompi-1.4.12-no-OFED.eb index 10937cf227..45442d4279 100644 --- a/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.1-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/o/OPARI2/OPARI2-1.1.1-gompi-1.4.12-no-OFED.eb @@ -6,6 +6,8 @@ # This work is based from experiences from the UNITE project # http://apps.fz-juelich.de/unite/ ## +easyblock = 'ConfigureMake' + name = "OPARI2" version = "1.1.1" diff --git a/easybuild/easyconfigs/o/OTF/OTF-1.12.4-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/o/OTF/OTF-1.12.4-gompi-1.4.12-no-OFED.eb index 23a2067ba3..e12b8e7289 100644 --- a/easybuild/easyconfigs/o/OTF/OTF-1.12.4-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/o/OTF/OTF-1.12.4-gompi-1.4.12-no-OFED.eb @@ -6,6 +6,8 @@ # This work is based from experiences from the UNITE project # http://apps.fz-juelich.de/unite/ ## +easyblock = 'ConfigureMake' + name = "OTF" version = "1.12.4" diff --git a/easybuild/easyconfigs/o/OTF/OTF-1.12.4-ictce-5.3.0.eb b/easybuild/easyconfigs/o/OTF/OTF-1.12.4-ictce-5.3.0.eb index 0d0f9bbf97..3d6eb22e24 100644 --- a/easybuild/easyconfigs/o/OTF/OTF-1.12.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/OTF/OTF-1.12.4-ictce-5.3.0.eb @@ -6,6 +6,8 @@ # This work is based from experiences from the UNITE project # http://apps.fz-juelich.de/unite/ ## +easyblock = 'ConfigureMake' + name = "OTF" version = "1.12.4" diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmpich-1.1.6-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmpich-1.1.6-LAPACK-3.4.2.eb index abdce00229..8991571a29 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmpich-1.1.6-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmpich-1.1.6-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.1.12rc1-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.1.12rc1-LAPACK-3.4.2.eb index bd5eecd070..d1b894ad4f 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.1.12rc1-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.1.12rc1-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.2.7-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.2.7-LAPACK-3.4.2.eb index 1a2834548f..2a74f0df57 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.2.7-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.2.7-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgompi-1.1.7-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgompi-1.1.7-LAPACK-3.4.2.eb index e1dcbd97ad..db8c2a2ae9 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgompi-1.1.7-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgompi-1.1.7-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich2-1.4.8-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich2-1.4.8-LAPACK-3.4.2.eb index 0d976a3941..b6807e4896 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich2-1.4.8-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich2-1.4.8-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12-LAPACK-3.4.2.eb index 213b5c2693..eeff1a610e 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12rc1-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12rc1-LAPACK-3.4.2.eb index 9cde4b308e..c49d67d7dd 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12rc1-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12rc1-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.3.12-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.3.12-LAPACK-3.4.2.eb index 531d85d549..3418f3debf 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.3.12-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.3.12-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-LAPACK-3.4.2.eb index 8f1b31ff70..c2e3d7dd6c 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-no-OFED-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-no-OFED-LAPACK-3.4.2.eb index 894ae9c79d..3f7e1416e6 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-no-OFED-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-no-OFED-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-ictce-5.3.0-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-ictce-5.3.0-LAPACK-3.4.2.eb index ea73c00268..a4874f4acc 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-ictce-5.3.0-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-ictce-5.3.0-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.6' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-LAPACK-3.5.0.eb index bb46444c9f..2e2671a3ee 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-LAPACK-3.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.8' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-no-OFED-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-no-OFED-LAPACK-3.5.0.eb index 61b77247fc..4d5c3d17b5 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-no-OFED-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-no-OFED-LAPACK-3.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.8' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.6.10-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.6.10-LAPACK-3.4.2.eb index bebc9bbde4..ad039bff77 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.6.10-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.6.10-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.8' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompic-2.6.10-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompic-2.6.10-LAPACK-3.4.2.eb index e73eb80ce1..94eeca4083 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompic-2.6.10-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompic-2.6.10-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.8' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-ictce-5.3.0-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-ictce-5.3.0-LAPACK-3.4.2.eb index 1766f2b85b..7986d74efa 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-ictce-5.3.0-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-ictce-5.3.0-LAPACK-3.4.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.8' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0.eb index 64d890e680..77ba44c791 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.9' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3-no-OFED.eb index 6d2e812c6e..e0f830eab3 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.4.5' versionsuffix = "-no-OFED" diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb index 26789b95ae..5a1b40ca4c 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.4.5' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb index df8b6e8bef..3e27daefc2 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.3' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb index ff863200f4..736321bbb0 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.4' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb index 053791e834..50044641a4 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.4' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2-no-OFED.eb index 17f945a10e..1157c6a64a 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.4' versionsuffix = '-no-OFED' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb index fa3425f1ab..6f9c77110f 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.4' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb index d0eab128c4..c5baab15d2 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.5' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb index ea1c8c9999..b2e9553b14 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.5' versionsuffix = "-no-OFED" diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb index 35d42cd257..a1c91281fa 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.5' versionsuffix = "-no-OFED" diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb index fcea032966..ebf8a047ae 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.5' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2-no-OFED.eb index 792495946f..0fa765f1f1 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.5' versionsuffix = '-no-OFED' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb index 0dccde3d24..65c16a9637 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.5' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb index 6f2cfbd602..cb819404af 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.5' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb index c22cb6257c..0530b57251 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = "1.7.3" diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb index 60da7fbf14..6ca36b4be9 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = "1.7.3" diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb index 47030a907e..1b2a3512d0 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = "1.8.1" diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goalf-1.1.0-no-OFED.eb index 5716b4ba8c..07cb82d75c 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenPGM' version = '5.2.122' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb index a3b0cd4cae..46f7b82354 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenPGM' version = '5.2.122' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-4.1.13.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-4.1.13.eb index ed6cdc27e1..6ae37f3575 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenPGM' version = '5.2.122' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb index fe5999dc2b..a26c28e0af 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenPGM' version = '5.2.122' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb index 459c7147c9..324c3ec862 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenPGM' version = '5.2.122' diff --git a/easybuild/easyconfigs/o/otcl/otcl-1.14-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/o/otcl/otcl-1.14-goalf-1.1.0-no-OFED.eb index f32b55f7b3..1d362a73ae 100644 --- a/easybuild/easyconfigs/o/otcl/otcl-1.14-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/o/otcl/otcl-1.14-goalf-1.1.0-no-OFED.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'otcl' version = '1.14' diff --git a/easybuild/easyconfigs/o/otcl/otcl-1.14-goolf-1.4.10.eb b/easybuild/easyconfigs/o/otcl/otcl-1.14-goolf-1.4.10.eb index 3ceaa00f63..0a50c8abb9 100644 --- a/easybuild/easyconfigs/o/otcl/otcl-1.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/otcl/otcl-1.14-goolf-1.4.10.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'otcl' version = '1.14' diff --git a/easybuild/easyconfigs/o/otcl/otcl-1.14-ictce-5.3.0.eb b/easybuild/easyconfigs/o/otcl/otcl-1.14-ictce-5.3.0.eb index a431d1f789..597dc68acf 100644 --- a/easybuild/easyconfigs/o/otcl/otcl-1.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/otcl/otcl-1.14-ictce-5.3.0.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'otcl' version = '1.14' diff --git a/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-goolf-1.4.10.eb index d2c97d05e9..fdec406ad1 100644 --- a/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'PANDAseq' version = '2.5' diff --git a/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-ictce-4.1.13.eb b/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-ictce-4.1.13.eb index 4071617d72..c0eaa92772 100644 --- a/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'PANDAseq' version = '2.5' diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb index e0b128b990..4cd82eaeb6 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'PAPI' version = '5.0.1' diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb index 7189b64bdb..6ad4131d3d 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'PAPI' version = '5.0.1' diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb index b23b5833d7..7a5c98d762 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'PAPI' version = '5.0.1' diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb index 64125e4f36..7dfa97e510 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.0.1-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'PAPI' version = '5.0.1' diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb index 9ff30db1ba..c8c6b3d569 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-gompi-1.4.12-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'PAPI' version = '5.2.0' diff --git a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb index 6742cc942f..c548c0f167 100644 --- a/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PAPI/PAPI-5.2.0-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'PAPI' version = '5.2.0' diff --git a/easybuild/easyconfigs/p/PCC/PCC-20131024.eb b/easybuild/easyconfigs/p/PCC/PCC-20131024.eb index 221d36d825..be6e59a2e9 100644 --- a/easybuild/easyconfigs/p/PCC/PCC-20131024.eb +++ b/easybuild/easyconfigs/p/PCC/PCC-20131024.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'PCC' version = '20131024' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goalf-1.1.0-no-OFED.eb index 8718e93456..e95902eec8 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'PCRE' version = '8.12' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goolf-1.4.10.eb index f5f370eec7..0f58883e8e 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'PCRE' version = '8.12' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-4.0.6.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-4.0.6.eb index 42512f1d02..ae806687ed 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'PCRE' version = '8.12' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.3.0.eb index f6289567b4..0a2a528704 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'PCRE' version = '8.12' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.5.0.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.5.0.eb index 8969a6112b..82e14a704f 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'PCRE' version = '8.12' diff --git a/easybuild/easyconfigs/p/PDT/PDT-3.19-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/p/PDT/PDT-3.19-gompi-1.4.12-no-OFED.eb index fae4a7ac19..a6ab7c4155 100644 --- a/easybuild/easyconfigs/p/PDT/PDT-3.19-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/p/PDT/PDT-3.19-gompi-1.4.12-no-OFED.eb @@ -6,6 +6,8 @@ # This work is based from experiences from the UNITE project # http://apps.fz-juelich.de/unite/ ## +easyblock = 'ConfigureMake' + name = "PDT" version = "3.19" diff --git a/easybuild/easyconfigs/p/PDT/PDT-3.19-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PDT/PDT-3.19-ictce-5.3.0.eb index d5d52a3127..7faa216ef2 100644 --- a/easybuild/easyconfigs/p/PDT/PDT-3.19-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PDT/PDT-3.19-ictce-5.3.0.eb @@ -6,6 +6,8 @@ # This work is based from experiences from the UNITE project # http://apps.fz-juelich.de/unite/ ## +easyblock = 'ConfigureMake' + name = "PDT" version = "3.19" diff --git a/easybuild/easyconfigs/p/ParFlow/ParFlow-605-goolf-1.4.10.eb b/easybuild/easyconfigs/p/ParFlow/ParFlow-605-goolf-1.4.10.eb index 996da143c0..692186178b 100644 --- a/easybuild/easyconfigs/p/ParFlow/ParFlow-605-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/ParFlow/ParFlow-605-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ParFlow' version = '605' diff --git a/easybuild/easyconfigs/p/PhyML/PhyML-20120412-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PhyML/PhyML-20120412-goolf-1.4.10.eb index a63b23cc20..2ee0e32243 100644 --- a/easybuild/easyconfigs/p/PhyML/PhyML-20120412-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PhyML/PhyML-20120412-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'PhyML' version = '20120412' diff --git a/easybuild/easyconfigs/p/PhyML/PhyML-20131016-devel-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PhyML/PhyML-20131016-devel-goolf-1.4.10.eb index 4e9e600420..3c4e95c7ce 100644 --- a/easybuild/easyconfigs/p/PhyML/PhyML-20131016-devel-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PhyML/PhyML-20131016-devel-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'PhyML' version = '20131016' versionsuffix = 'devel' diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb index 3fe8494379..cfd2944d18 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'parallel' version = '20130122' diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb index 7aa979a26c..dc28a0e211 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'parallel' version = '20130122' diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb index 5bb28dbaaf..355352cf8e 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'parallel' version = '20130122' diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb index 1e542acddf..a00d8552bf 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'parallel' version = '20130122' diff --git a/easybuild/easyconfigs/p/patch/patch-2.7.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/patch/patch-2.7.1-goolf-1.4.10.eb index 2bd4cf1e84..29909ec601 100644 --- a/easybuild/easyconfigs/p/patch/patch-2.7.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/patch/patch-2.7.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "patch" version = "2.7.1" diff --git a/easybuild/easyconfigs/p/patch/patch-2.7.1-ictce-5.3.0.eb b/easybuild/easyconfigs/p/patch/patch-2.7.1-ictce-5.3.0.eb index d40dfa96e1..e4181c9571 100644 --- a/easybuild/easyconfigs/p/patch/patch-2.7.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/patch/patch-2.7.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "patch" version = "2.7.1" diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goalf-1.1.0-no-OFED.eb index 390422df74..50258b4bd0 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "pixman" version = '0.28.2' diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goolf-1.4.10.eb b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goolf-1.4.10.eb index d9363692b1..541743ef66 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "pixman" version = '0.28.2' diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-3.2.2.u3.eb index b4b6fab57b..7971e5ec6d 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "pixman" version = '0.28.2' diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-4.1.13.eb b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-4.1.13.eb index 67d2d2a51c..003ed58349 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "pixman" version = '0.28.2' diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-5.3.0.eb b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-5.3.0.eb index f27088d0c8..730661425c 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "pixman" version = '0.28.2' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goalf-1.1.0-no-OFED.eb index fccf4e3235..b0953355e6 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'pkg-config' version = '0.27.1' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goolf-1.4.10.eb index b6c751b4a9..d628126097 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'pkg-config' version = '0.27.1' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-4.0.6.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-4.0.6.eb index 5cc5eaf745..2d7168b4db 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'pkg-config' version = '0.27.1' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.3.0.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.3.0.eb index 4ac6d340c9..d9c51d2da3 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'pkg-config' version = '0.27.1' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.5.0.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.5.0.eb index 1bd0dd1cca..927b413c4e 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'pkg-config' version = '0.27.1' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-GCC-4.8.2.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-GCC-4.8.2.eb index db256e78c9..fa19c90773 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'pkg-config' version = '0.28' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-ictce-5.5.0.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-ictce-5.5.0.eb index cce7defca3..309549fb3b 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'pkg-config' version = '0.28' diff --git a/easybuild/easyconfigs/p/popt/popt-1.14-GCC-4.8.2.eb b/easybuild/easyconfigs/p/popt/popt-1.14-GCC-4.8.2.eb index d101618644..0b1a4ed316 100644 --- a/easybuild/easyconfigs/p/popt/popt-1.14-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/p/popt/popt-1.14-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'popt' version = '1.14' diff --git a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.4.10.eb index 7be5764ef6..8346a5cd7a 100644 --- a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'printproto' version = '1.0.5' diff --git a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-ictce-4.1.13.eb b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-ictce-4.1.13.eb index f66766ca39..db2b6fad94 100644 --- a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'printproto' version = '1.0.5' diff --git a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-ictce-5.3.0.eb b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-ictce-5.3.0.eb index bc10ad3e08..ae82f50061 100644 --- a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'printproto' version = '1.0.5' diff --git a/easybuild/easyconfigs/p/problog/problog-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/problog/problog-1.1-goolf-1.4.10.eb index 175300bf06..bf69687a4b 100644 --- a/easybuild/easyconfigs/p/problog/problog-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/problog/problog-1.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'problog' version = '1.1' diff --git a/easybuild/easyconfigs/p/problog/problog-1.1-ictce-4.1.13.eb b/easybuild/easyconfigs/p/problog/problog-1.1-ictce-4.1.13.eb index bdb283bfde..fb28417a02 100644 --- a/easybuild/easyconfigs/p/problog/problog-1.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/problog/problog-1.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'problog' version = '1.1' diff --git a/easybuild/easyconfigs/p/problog/problog-1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/p/problog/problog-1.1-ictce-5.3.0.eb index 0a186e7979..94556bf0db 100644 --- a/easybuild/easyconfigs/p/problog/problog-1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/problog/problog-1.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'problog' version = '1.1' diff --git a/easybuild/easyconfigs/p/protobuf/protobuf-2.4.0a-goolf-1.4.10.eb b/easybuild/easyconfigs/p/protobuf/protobuf-2.4.0a-goolf-1.4.10.eb index 7d1df26fcd..09916bed54 100644 --- a/easybuild/easyconfigs/p/protobuf/protobuf-2.4.0a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/protobuf/protobuf-2.4.0a-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'protobuf' version = '2.4.0a' diff --git a/easybuild/easyconfigs/p/protobuf/protobuf-2.5.0-goolf-1.4.10.eb b/easybuild/easyconfigs/p/protobuf/protobuf-2.5.0-goolf-1.4.10.eb index f6ab1b5fd2..e9345ea16d 100644 --- a/easybuild/easyconfigs/p/protobuf/protobuf-2.5.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/protobuf/protobuf-2.5.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'protobuf' version = '2.5.0' diff --git a/easybuild/easyconfigs/p/pscom/pscom-5.0.43-GCC-4.8.2.eb b/easybuild/easyconfigs/p/pscom/pscom-5.0.43-GCC-4.8.2.eb index cfe93d54be..1c59dd3dd2 100644 --- a/easybuild/easyconfigs/p/pscom/pscom-5.0.43-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/p/pscom/pscom-5.0.43-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'pscom' version = '5.0.43' diff --git a/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2-mt.eb b/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2-mt.eb index c7ecac10eb..86c6b1c004 100644 --- a/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2-mt.eb +++ b/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2-mt.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'psmpi2' version = '5.0.29' versionsuffix = "-mt" diff --git a/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2.eb b/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2.eb index b860c7c966..a095dc02b4 100644 --- a/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'psmpi2' version = '5.0.29' diff --git a/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-goolf-1.4.10.eb index dc4855b885..16a64ab3be 100644 --- a/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'QuadProg++' version = '1.2.1' diff --git a/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-ictce-6.2.5.eb b/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-ictce-6.2.5.eb index 1349b54e09..8514e49d95 100644 --- a/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/q/QuadProg++/QuadProg++-1.2.1-ictce-6.2.5.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'QuadProg++' version = '1.2.1' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-hybrid-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-hybrid-sse3.eb index 6595ee7ff9..567f46f555 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-hybrid-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-hybrid-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-hybrid-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mpi-sse3.eb index d8de4bf7cb..0a2fbab41a 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mpi-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-mpi-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mt-sse3.eb index 3ba1085ce5..ebf504fd65 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mt-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-mt-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-seq-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-seq-sse3.eb index eda1d5ebd4..67c58af8a4 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-seq-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-seq-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-seq-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-hybrid-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-hybrid-sse3.eb index 608d0133cc..4d4122a29d 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-hybrid-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-hybrid-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-hybrid-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mpi-sse3.eb index 018ce60b29..bb28e8240e 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mpi-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-mpi-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mt-sse3.eb index ceb3f7274f..9768fc2a61 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mt-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-mt-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-seq-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-seq-sse3.eb index a99aa73761..6c06107ea3 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-seq-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-seq-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-seq-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-hybrid-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-hybrid-sse3.eb index 96b1653598..c8becaa3bb 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-hybrid-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-hybrid-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-hybrid-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mpi-sse3.eb index 711bc08cba..e759597ee1 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mpi-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-mpi-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mt-sse3.eb index 22330232a7..4dc53e2ba9 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mt-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-mt-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-seq-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-seq-sse3.eb index afbfed7d48..b257e16233 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-seq-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-seq-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.2.6' versionsuffix ='-seq-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-hybrid-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-hybrid-sse3.eb index 5fe5f75ee8..e836b4e2bd 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-hybrid-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-hybrid-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.7.5' versionsuffix ='-hybrid-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mpi-sse3.eb index 15a167d047..b5fb519230 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mpi-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.7.5' versionsuffix ='-mpi-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mt-sse3.eb index 2a99ea9684..25df746f3e 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mt-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.7.5' versionsuffix ='-mt-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-seq-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-seq-sse3.eb index 3c1aaa4fa6..46179d71f4 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-seq-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-seq-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.7.5' versionsuffix ='-seq-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-hybrid-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-hybrid-sse3.eb index 8e77ddeabb..e82295aeaa 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-hybrid-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-hybrid-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.7.5' versionsuffix ='-hybrid-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mpi-sse3.eb index 4ec9ba9bbe..dc746f9bc0 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mpi-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.7.5' versionsuffix ='-mpi-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mt-sse3.eb index ea335a7752..6c8a50bbe3 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mt-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.7.5' versionsuffix ='-mt-sse3' diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-seq-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-seq-sse3.eb index 717b2ea9a8..9fb4191bd0 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-seq-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-seq-sse3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RAxML' version = '7.7.5' versionsuffix ='-seq-sse3' diff --git a/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb index 4441372686..1fd62ac72d 100644 --- a/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RCS/RCS-5.7-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'RCS' version = '5.7' diff --git a/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb b/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb index 113b26618f..ff4020095b 100644 --- a/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/RCS/RCS-5.7-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'RCS' version = '5.7' diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb index 5f73c5cbb8..4a8aad95e6 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RELION' version = '1.3' diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb index 38ac0e7bd3..ef1b4125d7 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'RELION' version = '1.3' diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb index c6400a38a6..f2f5762dda 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'RNAz' version = '2.1' diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb index 55a37ca92e..c2b6fa1b2b 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'RNAz' version = '2.1' diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb index dc369a4ca4..7db2213126 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'RNAz' version = '2.1' diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb index d135e05be9..32c6bcbc4b 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'RNAz' version = '2.1' diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.0-goolf-1.4.10.eb index 520edc5c97..d0fd6f17e3 100644 --- a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.0-goolf-1.4.10.eb @@ -6,6 +6,8 @@ # License: MIT # Authors: Aaron Zauner # ---------------------------------------------------------------------------- +easyblock = 'ConfigureMake' + name = 'Ruby' version = '2.1.0' diff --git a/easybuild/easyconfigs/r/renderproto/renderproto-0.11-foss-2014b.eb b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-foss-2014b.eb index 930e209875..f073ec9749 100644 --- a/easybuild/easyconfigs/r/renderproto/renderproto-0.11-foss-2014b.eb +++ b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'renderproto' version = '0.11' diff --git a/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2014b.eb b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2014b.eb index 03b199aa33..34ed4ccca7 100644 --- a/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2014b.eb +++ b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'renderproto' version = '0.11' diff --git a/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb b/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb index 9927f56e80..b97860755c 100644 --- a/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb +++ b/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'SDCC' version = '3.3.0' diff --git a/easybuild/easyconfigs/s/SDPA/SDPA-7.3.8-ictce-6.2.5.eb b/easybuild/easyconfigs/s/SDPA/SDPA-7.3.8-ictce-6.2.5.eb index 6b82bdfabe..afd09dc3cc 100644 --- a/easybuild/easyconfigs/s/SDPA/SDPA-7.3.8-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/s/SDPA/SDPA-7.3.8-ictce-6.2.5.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'SDPA' version = '7.3.8' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb index f433805ea2..e74d6f7a39 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'SQLite' version = '3.7.17' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb index 58fc8ec634..30d45082a1 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.7.17-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'SQLite' version = '3.7.17' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb index 74874fbe33..c08623a5a5 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'SQLite' version = '3.8.1' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb index 5a4a79fb3e..05b5ca95c1 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.1-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'SQLite' version = '3.8.1' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb index 0e9779499e..f0ed15f86c 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-intel-2014b.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' + name = 'SQLite' version = '3.8.6' diff --git a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-goolf-1.4.10.eb index 1a4ec0de84..55cd2babc0 100644 --- a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Sablotron' version = '1.0.3' diff --git a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-4.1.13.eb index 1ed69df631..db41cb46c7 100644 --- a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Sablotron' version = '1.0.3' diff --git a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-5.3.0.eb index 12bb8bfb6e..3b78da50c7 100644 --- a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Sablotron' version = '1.0.3' diff --git a/easybuild/easyconfigs/s/Silo/Silo-4.9.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Silo/Silo-4.9.1-goolf-1.4.10.eb index 428b3a85f6..7bc12da16d 100644 --- a/easybuild/easyconfigs/s/Silo/Silo-4.9.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Silo/Silo-4.9.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Silo' version = '4.9.1' diff --git a/easybuild/easyconfigs/s/Silo/Silo-4.9.1-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Silo/Silo-4.9.1-ictce-5.3.0.eb index 672084b8d3..84c2cd61ba 100644 --- a/easybuild/easyconfigs/s/Silo/Silo-4.9.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Silo/Silo-4.9.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Silo' version = '4.9.1' diff --git a/easybuild/easyconfigs/s/Stacks/Stacks-1.03-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Stacks/Stacks-1.03-goolf-1.4.10.eb index e44c0bb845..a99ef374cd 100644 --- a/easybuild/easyconfigs/s/Stacks/Stacks-1.03-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Stacks/Stacks-1.03-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Stacks' version = '1.03' diff --git a/easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-4.1.13.eb b/easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-4.1.13.eb index cf59c4dd92..3275afeb24 100644 --- a/easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Stacks' version = '1.03' diff --git a/easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-5.3.0.eb index 196d2c22e4..a9bfd6bbb4 100644 --- a/easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Stacks/Stacks-1.03-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Stacks' version = '1.03' diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb index 365dfbb4b1..08108a8a47 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Stow' version = '1.3.3' diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb index ca0bee0057..bff8348243 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Stow' version = '1.3.3' diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb index 96eed12422..3dacc81151 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Stow' version = '1.3.3' diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb index 874f105bfc..03fc7dd37c 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Stow' version = '1.3.3' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb index 091eab829e..e5111378c8 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-goalf-1.1.0-no-OFED.eb index 2b17a34281..428ca53264 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb index ab5385e081..e66bad6682 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.14.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.14.eb index 8425ead1ff..a04f959983 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.14.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-3.2.2.u3.eb index 3fa29ddfd5..f3ea085a38 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.0.6.eb index 7a62823609..3b871003de 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.1.13.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.1.13.eb index 4f24111aec..508e0b416f 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb index 2a25201a86..add5a1ec83 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb index 6a5c6496e0..b4b3cf9023 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb index d2fa1bb4ae..c69f9f0890 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb index aeb0249154..169a754e3c 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2014b.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2014b.eb index e524eb3ab0..5d4845b993 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2014b.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-iqacml-3.7.3.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-iqacml-3.7.3.eb index 35decfb686..4e7d1f550f 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' diff --git a/easybuild/easyconfigs/s/sed/sed-4.2.2-goolf-1.4.10.eb b/easybuild/easyconfigs/s/sed/sed-4.2.2-goolf-1.4.10.eb index 03dbd2a52c..b861111a29 100644 --- a/easybuild/easyconfigs/s/sed/sed-4.2.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/sed/sed-4.2.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'sed' version = '4.2.2' diff --git a/easybuild/easyconfigs/s/sed/sed-4.2.2-ictce-5.3.0.eb b/easybuild/easyconfigs/s/sed/sed-4.2.2-ictce-5.3.0.eb index e36edb5e09..3f2b5b1329 100644 --- a/easybuild/easyconfigs/s/sed/sed-4.2.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/sed/sed-4.2.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'sed' version = '4.2.2' diff --git a/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb b/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb index 58cd192860..e7a38fab79 100644 --- a/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb +++ b/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'TCC' version = '0.9.26' # altversions = ['0.9.21', '0.9.22', '0.9.23', '0.9.24', '0.9.25', '0.9.26'] # older versions may require more special handling diff --git a/easybuild/easyconfigs/t/TREE-PUZZLE/TREE-PUZZLE-5.2-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TREE-PUZZLE/TREE-PUZZLE-5.2-goolf-1.4.10.eb index c0af373e76..c6409b2a07 100644 --- a/easybuild/easyconfigs/t/TREE-PUZZLE/TREE-PUZZLE-5.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TREE-PUZZLE/TREE-PUZZLE-5.2-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'TREE-PUZZLE' version = '5.2' diff --git a/easybuild/easyconfigs/t/Tar/Tar-1.26-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/Tar/Tar-1.26-goalf-1.1.0-no-OFED.eb index a50ed96b52..9c40f2197e 100644 --- a/easybuild/easyconfigs/t/Tar/Tar-1.26-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/Tar/Tar-1.26-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'Tar' version = '1.26' diff --git a/easybuild/easyconfigs/t/Tar/Tar-1.26-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Tar/Tar-1.26-goolf-1.4.10.eb index 72c6d238a9..69b3b4ca40 100644 --- a/easybuild/easyconfigs/t/Tar/Tar-1.26-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Tar/Tar-1.26-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'Tar' version = '1.26' diff --git a/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-4.0.6.eb b/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-4.0.6.eb index dc4a806ac5..79b6f833d1 100644 --- a/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'Tar' version = '1.26' diff --git a/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-5.3.0.eb index 5b4cb4045a..20133db903 100644 --- a/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tar/Tar-1.26-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-19.html ## +easyblock = 'ConfigureMake' + name = 'Tar' version = '1.26' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.3.5-ictce-5.5.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.3.5-ictce-5.5.0.eb index 0ae385c2c3..726260bf2a 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.3.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.3.5-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.3.5' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb index 95b5419032..56aa85437a 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvapich2-1.7.12.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvapich2-1.7.12.eb index 689842042d..0b513c298d 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvapich2-1.7.12.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvapich2-1.7.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvolf-1.7.12.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvolf-1.7.12.eb index 899d69d41e..9743808746 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvolf-1.7.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goalf-1.1.0-no-OFED.eb index a6501f1b5e..798d6318ab 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolf-1.4.10.eb index 27a3950e2a..03ee12ce9e 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolfc-1.3.12.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolfc-1.3.12.eb index 2a3c19f997..cbf87195ac 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolfc-1.3.12.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolfc-1.3.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.10.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.10.eb index f668d7842d..6cb79b440c 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.10.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.6.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.6.eb index 4d9a18f5eb..d5ce26d001 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.3.0.eb index 8bb041cf6a..202d36aca9 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.5.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.5.0.eb index ec1c6b13c0..e9377fec2a 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb index f177c6c0ab..6cf99c0db3 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-goolf-1.4.10.eb index 7cb14f7787..b3c4b0b321 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.14' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-ictce-5.3.0.eb index 301ffc1343..c792463dcf 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.14' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb index e52a011d4b..c6470074d5 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.15' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.16-ictce-5.5.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.16-ictce-5.5.0.eb index 92cc52efd8..8acb552d5d 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.16-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.16-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.5.16' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-goolf-1.4.10.eb index 0b20131cf1..656a267905 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.6.1' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-ictce-5.3.0.eb index fa866637b3..71cf86f3ac 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.6.1' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-intel-2014b.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-intel-2014b.eb index a1029dc7e5..193e0aaf1c 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-intel-2014b.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tcl' version = '8.6.2' diff --git a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goalf-1.1.0-no-OFED.eb index f8304ecbf6..859871997e 100644 --- a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TiCCutils' version = '0.3' diff --git a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goolf-1.4.10.eb index 876f4f8611..d14a03ca50 100644 --- a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TiCCutils' version = '0.3' diff --git a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-4.1.13.eb index c8b93be0de..181443391b 100644 --- a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TiCCutils' version = '0.3' diff --git a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-5.3.0.eb index 62961448eb..a1560bc07f 100644 --- a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TiCCutils' version = '0.3' diff --git a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goalf-1.1.0-no-OFED.eb index 5d54a71a23..d4ed9ad26c 100644 --- a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TiMBL' version = '6.4.3' diff --git a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goolf-1.4.10.eb index 22b808acea..bfc1a1974a 100644 --- a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TiMBL' version = '6.4.3' diff --git a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-4.1.13.eb b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-4.1.13.eb index 5ebf5b6f91..2dc98b3066 100644 --- a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TiMBL' version = '6.4.3' diff --git a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-5.3.0.eb b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-5.3.0.eb index 6e089d48ca..51cd57a6f7 100644 --- a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TiMBL' version = '6.4.3' diff --git a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goalf-1.1.0-no-OFED.eb index ba2a59f9bc..456eed6b56 100644 --- a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TinySVM' version = '0.09' diff --git a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goolf-1.4.10.eb index c21c1d399b..3b1c60d110 100644 --- a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TinySVM' version = '0.09' diff --git a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-4.1.13.eb b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-4.1.13.eb index b8124f24d7..7676e956fa 100644 --- a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TinySVM' version = '0.09' diff --git a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-5.3.0.eb b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-5.3.0.eb index 15cc775d69..7c112ec105 100644 --- a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'TinySVM' version = '0.09' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb index 44b2a3684d..9ebfd37f5f 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tk' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-goalf-1.1.0-no-OFED.eb index a8d8d4acdf..5f035ccbf2 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tk' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-goolf-1.4.10.eb index b862540b18..16d5293528 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tk' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.10.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.10.eb index ffd89a9367..1415c70f4e 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.10.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tk' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.6.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.6.eb index 63e7f3be76..5c0a6ccd92 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tk' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-5.3.0.eb index 93b3e36dcc..f65e1a0e09 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tk' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb index 00f3f3843c..25372ffd8f 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.12-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tk' version = '8.5.12' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.5.15-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tk/Tk-8.5.15-ictce-5.3.0.eb index 2c8c0ace46..3231de70b9 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.5.15-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.5.15-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Tk' version = '8.5.15' diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb index 2314825cf5..063b42af9e 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.10-ictce-5.5.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'TopHat' version = '2.0.10' diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb index 144c92606e..2ba3b07819 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'TopHat' version = '2.0.4' diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb index deaed8f5fc..0136815261 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.4-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'TopHat' version = '2.0.4' diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb index 0b1d43e37e..dff35b1d3f 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-goolf-1.4.10-biodeps-1.6-extended.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'TopHat' version = '2.0.8' diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb index ef414ccc38..76567e2542 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'TopHat' version = '2.0.8' diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb index e60254e68a..5890c30330 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0-biodeps-1.6-extended.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'TopHat' version = '2.0.8' diff --git a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb index 4566c53776..60dbbd04a5 100644 --- a/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/TopHat/TopHat-2.0.8-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'TopHat' version = '2.0.8' diff --git a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goalf-1.1.0-no-OFED.eb index 13e8e5b541..ae48804dd3 100644 --- a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goalf-1.1.0-no-OFED.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'tclcl' version = '1.20' diff --git a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goolf-1.4.10.eb b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goolf-1.4.10.eb index 543df7cda4..76b89b4e3d 100644 --- a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goolf-1.4.10.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'tclcl' version = '1.20' diff --git a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-ictce-5.3.0.eb b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-ictce-5.3.0.eb index 6a5992639e..70183e7b6f 100644 --- a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-ictce-5.3.0.eb @@ -1,6 +1,8 @@ # # author: Dina Mahmoud Ibrahim (Cairo University) # +easyblock = 'ConfigureMake' + name = 'tclcl' version = '1.20' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goalf-1.1.0-no-OFED.eb index 2234ca846b..66720a2d37 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'tcsh' version = '6.18.01' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb index a1598c39ab..a414135707 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'tcsh' version = '6.18.01' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb index f00809a6cd..2e710f4a1d 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'tcsh' version = '6.18.01' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-3.2.2.u3.eb index ee941a1c83..e8fe446e8b 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-3.2.2.u3.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'tcsh' version = '6.18.01' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-4.1.13.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-4.1.13.eb index d0dc781a4a..42dc94a346 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-4.1.13.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'tcsh' version = '6.18.01' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb index fe0717b9c9..432a9ad37d 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'tcsh' version = '6.18.01' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-iqacml-3.7.3.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-iqacml-3.7.3.eb index f06215e328..37494982ed 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-iqacml-3.7.3.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'tcsh' version = '6.18.01' diff --git a/easybuild/easyconfigs/t/texinfo/texinfo-5.2-GCC-4.8.2.eb b/easybuild/easyconfigs/t/texinfo/texinfo-5.2-GCC-4.8.2.eb index 557132ce4f..233c5a0e62 100644 --- a/easybuild/easyconfigs/t/texinfo/texinfo-5.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/t/texinfo/texinfo-5.2-GCC-4.8.2.eb @@ -3,6 +3,8 @@ # ## +easyblock = 'ConfigureMake' + name = 'texinfo' version = '5.2' diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb index 751f83dd15..50fbec0e1c 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'UDUNITS' version = '2.1.24' diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb index 1332ad036a..46c29b08f1 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'UDUNITS' version = '2.1.24' diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb index 487f4a29f0..d95d2e2e5f 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'UDUNITS' version = '2.1.24' diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb index bc93ab89ba..0b5eedcf68 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'UDUNITS' version = '2.1.24' diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb index d541df72c5..b3e41567be 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'UDUNITS' version = '2.1.24' diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb index 32cc46185a..ac829b62ae 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'UDUNITS' version = '2.1.24' diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb index 43bf26871b..b0e1ae05f8 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'UDUNITS' version = '2.1.24' diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb index 3f7cad9407..bfcc6592ef 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' + name = 'UDUNITS' version = '2.1.24' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goalf-1.1.0-no-OFED.eb index 282691e211..5c2f9f5f7c 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'util-linux' version = '2.22.2' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb index 2181cfe1cc..80fbeb975f 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'util-linux' version = '2.22.2' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-4.1.13.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-4.1.13.eb index 5bcfe76a71..f9d273f24a 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'util-linux' version = '2.22.2' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb index 6fa9dfbdc6..aa973159c7 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'util-linux' version = '2.22.2' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb index 4e19abd21c..a3c1598357 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'util-linux' version = '2.22.2' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb index 3645a939e6..bfe2f53f72 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'util-linux' version = '2.22.2' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb index 696815202f..c583476f42 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'util-linux' version = '2.24' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb index 77d061f0e0..ba35f12734 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'util-linux' version = '2.24.1' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb index a4f97aabce..831d945988 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmpolf-1.1.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.8.1' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb index 0aa4b0495e..4ef81eed36 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.1.12rc1.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.8.1' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb index 1c377cf16d..07d51ab2d9 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgmvolf-1.2.7.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.8.1' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb index 3132cd2aab..b01834e9d7 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-cgoolf-1.1.7.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.8.1' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb index 41782a4d2b..9b14309ef1 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.8.1' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb index dd1224eef9..6b6c92bf80 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-gmvolf-1.7.12rc1.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.8.1' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb index 7c373baaf1..87fdb08561 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.8.1' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb index e5a3597f20..577f4846d8 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.8.1-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.8.1' diff --git a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb index b5dca0efce..3a3d16b550 100644 --- a/easybuild/easyconfigs/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/v/Valgrind/Valgrind-3.9.0-goalf-1.5.12-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## +easyblock = 'ConfigureMake' + name = 'Valgrind' version = '3.9.0' diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb index 2d3e76370b..3f61b94705 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ViennaRNA' version = '2.0.7' diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb index 36873d32de..6f92dee837 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ViennaRNA' version = '2.0.7' diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb index 6054621fcc..68de4eec04 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ViennaRNA' version = '2.0.7' diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb index e53c48b717..14f9815f66 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ViennaRNA' version = '2.0.7' diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb index 3d637860aa..281ecf7b59 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'ViennaRNA' version = '2.1.6' diff --git a/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb index 6d3e505fff..9ed98058b9 100644 --- a/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'Vim' version = '7.4' diff --git a/easybuild/easyconfigs/x/XZ/XZ-5.0.5-GCC-4.8.2.eb b/easybuild/easyconfigs/x/XZ/XZ-5.0.5-GCC-4.8.2.eb index 21392a267a..fad6a95d95 100644 --- a/easybuild/easyconfigs/x/XZ/XZ-5.0.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/x/XZ/XZ-5.0.5-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'XZ' version = '5.0.5' diff --git a/easybuild/easyconfigs/x/XZ/XZ-5.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/x/XZ/XZ-5.0.5-goolf-1.4.10.eb index 2393846fce..171e02c46b 100644 --- a/easybuild/easyconfigs/x/XZ/XZ-5.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/x/XZ/XZ-5.0.5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'XZ' version = '5.0.5' diff --git a/easybuild/easyconfigs/x/XZ/XZ-5.0.5-ictce-5.3.0.eb b/easybuild/easyconfigs/x/XZ/XZ-5.0.5-ictce-5.3.0.eb index 9c4849b2f4..c7b1752259 100644 --- a/easybuild/easyconfigs/x/XZ/XZ-5.0.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/x/XZ/XZ-5.0.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'XZ' version = '5.0.5' diff --git a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-goolf-1.4.10.eb index efca87d195..f4bfeba75e 100644 --- a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xbitmaps' version = '1.1.1' diff --git a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-4.1.13.eb b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-4.1.13.eb index ae60178976..73f42d4735 100644 --- a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xbitmaps' version = '1.1.1' diff --git a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-5.3.0.eb index b3d975a744..524c55782b 100644 --- a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xbitmaps' version = '1.1.1' diff --git a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2014b.eb b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2014b.eb index 83ab83e3b5..e352b3479d 100644 --- a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2014b.eb +++ b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xbitmaps' version = '1.1.1' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-foss-2014b-Python-2.7.8.eb index 735384e381..ffd6717735 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-foss-2014b-Python-2.7.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xcb-proto' version = '1.10' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb index 562fed8e6a..1f1ee49c72 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xcb-proto' version = '1.10' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 7967056f54..01ca8890f3 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xcb-proto' version = '1.7' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.4.10-Python-2.7.3.eb index 2abcefbb79..49ac560a5b 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.4.10-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xcb-proto' version = '1.7' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.0.6-Python-2.7.3.eb index c549243fc9..fb6b5dd346 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.0.6-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xcb-proto' version = '1.7' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.1.13-Python-2.7.3.eb index d24f9eabc0..673f729a0b 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.1.13-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xcb-proto' version = '1.7' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-5.3.0-Python-2.7.3.eb index 8b559cf4c9..153a7de496 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-5.3.0-Python-2.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xcb-proto' version = '1.7' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2014b-Python-2.7.8.eb index b0f51bda9f..e1af44f569 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2014b-Python-2.7.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xcb-proto' version = '1.7' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.4.10.eb index 199f76e62c..3418593f36 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xextproto' version = '7.2.1' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-4.1.13.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-4.1.13.eb index 69a6696766..447dc3ac65 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xextproto' version = '7.2.1' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-5.3.0.eb index b6a0c15993..6256b4a10c 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xextproto' version = '7.2.1' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2014b.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2014b.eb index 826153fd6b..d79aece7ee 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2014b.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xextproto' version = '7.2.1' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb index 89156b2491..bfc2d59685 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xextproto' version = '7.3.0' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb index 384374b9fd..4ef466e9c6 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xextproto' version = '7.3.0' diff --git a/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-foss-2014b.eb b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-foss-2014b.eb index 923da1433b..f631bc5ac1 100644 --- a/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-foss-2014b.eb +++ b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xineramaproto' version = '1.2.1' diff --git a/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2014b.eb b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2014b.eb index a162834890..0875abaf8f 100644 --- a/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2014b.eb +++ b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xineramaproto' version = '1.2.1' diff --git a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-GCC-4.7.2.eb b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-GCC-4.7.2.eb index 13ac43c282..1d1be7fff0 100644 --- a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-GCC-4.7.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xorg-macros' version = '1.17' diff --git a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-goalf-1.1.0-no-OFED.eb index 14ecec020e..bc0f37c42c 100644 --- a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xorg-macros' version = '1.17' diff --git a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-goolf-1.4.10.eb b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-goolf-1.4.10.eb index 2f86fc78e0..a4bc0fb08d 100644 --- a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xorg-macros' version = '1.17' diff --git a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-4.0.6.eb b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-4.0.6.eb index 50f4a1d8d0..a26b58ae0d 100644 --- a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xorg-macros' version = '1.17' diff --git a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-4.1.13.eb b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-4.1.13.eb index 8dd184c7cd..33c1394181 100644 --- a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xorg-macros' version = '1.17' diff --git a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-5.3.0.eb b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-5.3.0.eb index f78b600788..d1253573cc 100644 --- a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xorg-macros' version = '1.17' diff --git a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-5.5.0.eb b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-5.5.0.eb index e68dae9312..a793ad1706 100644 --- a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.17-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xorg-macros' version = '1.17' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goalf-1.1.0-no-OFED.eb index ff6d5bf357..bb6336c340 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xproto' version = '7.0.23' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goolf-1.4.10.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goolf-1.4.10.eb index 03defde64f..6e21bf0fdc 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xproto' version = '7.0.23' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.0.6.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.0.6.eb index 723e7c3a06..d005dadc8e 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xproto' version = '7.0.23' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.1.13.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.1.13.eb index 5a3a786cfe..5f36cfb20c 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xproto' version = '7.0.23' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-5.3.0.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-5.3.0.eb index f8e513f302..096a07bd53 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xproto' version = '7.0.23' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-foss-2014b.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-foss-2014b.eb index b8ed0a3dda..14e0666049 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-foss-2014b.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xproto' version = '7.0.26' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2014b.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2014b.eb index 61f6320ae1..f620518aca 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2014b.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xproto' version = '7.0.26' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-goolf-1.4.10.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-goolf-1.4.10.eb index bfc50f46f5..6676a3761d 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xtrans' version = '1.2' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-4.1.13.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-4.1.13.eb index b8c63106bf..ae5d033d58 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xtrans' version = '1.2' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-5.3.0.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-5.3.0.eb index e8f54023d9..c4c078f4c4 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xtrans' version = '1.2' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.2.6-foss-2014b.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.2.6-foss-2014b.eb index d1976bfe2e..825d041de5 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.2.6-foss-2014b.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.2.6-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xtrans' version = '1.2.6' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb index e7c40f25bb..d17e971313 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'xtrans' version = '1.3.4' diff --git a/easybuild/easyconfigs/y/YAXT/YAXT-0.2.1-ictce-5.5.0.eb b/easybuild/easyconfigs/y/YAXT/YAXT-0.2.1-ictce-5.5.0.eb index 9f68b17626..21337d5364 100644 --- a/easybuild/easyconfigs/y/YAXT/YAXT-0.2.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/y/YAXT/YAXT-0.2.1-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'YAXT' version = '0.2.1' diff --git a/easybuild/easyconfigs/y/YamCha/YamCha-0.33-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/y/YamCha/YamCha-0.33-goalf-1.1.0-no-OFED.eb index 29818422af..06b72b0e9c 100644 --- a/easybuild/easyconfigs/y/YamCha/YamCha-0.33-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/y/YamCha/YamCha-0.33-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'YamCha' version = '0.33' diff --git a/easybuild/easyconfigs/y/YamCha/YamCha-0.33-goolf-1.4.10.eb b/easybuild/easyconfigs/y/YamCha/YamCha-0.33-goolf-1.4.10.eb index 552007667f..3b2bedf3fb 100644 --- a/easybuild/easyconfigs/y/YamCha/YamCha-0.33-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/y/YamCha/YamCha-0.33-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'YamCha' version = '0.33' diff --git a/easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-4.1.13.eb b/easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-4.1.13.eb index 17963696d5..7bbe1a3611 100644 --- a/easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'YamCha' version = '0.33' diff --git a/easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-5.3.0.eb b/easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-5.3.0.eb index ab5013b083..e2c37e8035 100644 --- a/easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/y/YamCha/YamCha-0.33-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'YamCha' version = '0.33' diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb index e3fb5188b9..44f8a5205c 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Yasm' version = '1.2.0' diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb index 458b0f96d9..6ed4579c34 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Yasm' version = '1.2.0' diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb index 7fcf38c560..592b6f2117 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Yasm' version = '1.2.0' diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb index 9e8a6cb25a..ab7055fa1c 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'Yasm' version = '1.2.0' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goalf-1.1.0-no-OFED.eb index 27a2cb351d..2f4d2827cf 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '2.2.0' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goolf-1.4.10.eb index 02264462d8..747cf1ffc2 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '2.2.0' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-4.1.13.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-4.1.13.eb index a24777e7cd..4dbaf2c3bd 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '2.2.0' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.3.0.eb index c50ac8ac7d..2ada7561b2 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '2.2.0' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.5.0.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.5.0.eb index b356788e95..629f7f4392 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '2.2.0' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goalf-1.1.0-no-OFED.eb index 117938148c..d1040c0b9b 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '3.2.2' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goolf-1.4.10.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goolf-1.4.10.eb index 2b19cc8a13..e0a45d3a3a 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '3.2.2' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-4.1.13.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-4.1.13.eb index 7f28e21cd4..6ea68c4e6d 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '3.2.2' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-5.3.0.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-5.3.0.eb index 4ab3604a00..e61f976c13 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '3.2.2' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.0.3-ictce-5.5.0.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.0.3-ictce-5.5.0.eb index 8d73e9399b..24e4243b5a 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.0.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.0.3-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ZeroMQ' version = '4.0.3' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goalf-1.1.0-no-OFED.eb index 17c57e3a33..9722f5606c 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.5' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goolf-1.4.10.eb index 37a22ea514..9aed2a6932 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.5' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb index 6f9f29cdf6..2e18c3c221 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.5' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb index f98d18e5a6..3ea3c48ed3 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.5' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb index e83e63b9a0..d2f50aacb7 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.5' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb index 000fa968a2..62745d552f 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.5' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-GCC-4.8.1.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-GCC-4.8.1.eb index a4fd2202ff..61a44ac90d 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-GCC-4.8.1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-GCC-4.8.2.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-GCC-4.8.2.eb index 1ea01ac224..eb13ffb722 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmpolf-1.1.6.eb index 386305c22a..8ff2614822 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmpolf-1.1.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.1.12rc1.eb index f5743c512f..226a64f7a2 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.1.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.2.7.eb index c9e43a88f7..48fed3624c 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.2.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgoolf-1.1.7.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgoolf-1.1.7.eb index 31e7f42168..1a47989ab0 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgoolf-1.1.7.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmpolf-1.4.8.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmpolf-1.4.8.eb index 92d4cdf564..0abf85da7c 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12.eb index 7c76a15ac9..524811dfd5 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12rc1.eb index c8968b88b1..93ea64e321 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12rc1.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.1.0-no-OFED.eb index 2f8eb6b8b5..2349edc7b6 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.5.12-no-OFED.eb index e008a0db4b..11979135cd 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.5.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gompi-1.4.12-no-OFED.eb index c3b54c089b..60e250ada0 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gompi-1.4.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolf-1.4.10.eb index 236fdcdc3b..ab6b94129c 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolf-1.5.14.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolf-1.5.14.eb index 52fc50eac3..e012746ef3 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolf-1.5.14.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb index 1ca5bc5bbe..a100b33695 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.10.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.10.eb index db3588af91..c028b11721 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.10.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.6.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.6.eb index b471f14d93..9728ddb7b2 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.1.13.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.1.13.eb index 9d9923836e..f713fd7cf7 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.2.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.2.0.eb index ac4741e288..1afe111ef5 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.2.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.3.0.eb index eefeec6086..115527d009 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.5.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.5.0.eb index fd81470bdd..07c5786ac6 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-intel-2014b.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-intel-2014b.eb index 0fd77e15a1..8aab462053 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-intel-2014b.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iomkl-4.6.13.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iomkl-4.6.13.eb index 7590e6e2cd..70d765ec12 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iomkl-4.6.13.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iomkl-4.6.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb index 3dc3f9dddf..bdb56c788c 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.7' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.8.2.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.8.2.eb index 403ff6fc84..d0162abd82 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb index 63df20ba2f..7ceb9c2b65 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goalf-1.5.12-no-OFED.eb index ae12b8259f..a3aeeef2fb 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goalf-1.5.12-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb index 986e3dfcf1..6cd26f940d 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb index 27d3151f32..4fe89ed538 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb index b2099d2818..caf2dc0994 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb index 248f31ff42..f62e4705f9 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.2.5.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.2.5.eb index c01d1b4c1f..4f273b2129 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.2.5.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.3.5.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.3.5.eb index 6a73536d22..434f52a5c9 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.3.5.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.3.5.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.1.2.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.1.2.eb index 457d596607..67693b864b 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.1.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014b.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014b.eb index ef77f5fc48..f986af06f4 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014b.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb index 56872ad351..3a10e30ffe 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zlib' version = '1.2.8' diff --git a/easybuild/easyconfigs/z/zsh/zsh-5.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zsh/zsh-5.0.2-goolf-1.4.10.eb index a29b8a9537..f585c174c3 100644 --- a/easybuild/easyconfigs/z/zsh/zsh-5.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zsh/zsh-5.0.2-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zsh' version = '5.0.2' diff --git a/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-4.1.13.eb b/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-4.1.13.eb index 9499744d7a..72db46c65f 100644 --- a/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zsh' version = '5.0.2' diff --git a/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-5.3.0.eb index 942cf2610b..7b99669170 100644 --- a/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'zsh' version = '5.0.2' diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb index 9a992f558c..35d2652e62 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'zsync' version = '0.6.2' diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb index 1ca29d4749..d756317c6c 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goolf-1.4.10.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'zsync' version = '0.6.2' diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb index d9bb674b26..406951135b 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'zsync' version = '0.6.2' diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb index 54b0aa906e..d72b794ff1 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html ## +easyblock = 'ConfigureMake' + name = 'zsync' version = '0.6.2' -- GitLab From 67ad0986da1afcb8a6c8c9554606291ccf999678 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 12 Dec 2014 14:28:53 +0100 Subject: [PATCH 0205/1217] add easyconfig for HDF5 v1.8.7 with gmpolf/1.4.8 --- .../h/HDF5/HDF5-1.8.7-gmpolf-1.4.8.eb | 23 +++++++++++++++++++ .../s/Szip/Szip-2.1-gmpolf-1.4.8.eb | 21 +++++++++++++++++ 2 files changed, 44 insertions(+) create mode 100644 easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-gmpolf-1.4.8.eb create mode 100644 easybuild/easyconfigs/s/Szip/Szip-2.1-gmpolf-1.4.8.eb diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-gmpolf-1.4.8.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-gmpolf-1.4.8.eb new file mode 100644 index 0000000000..3414ef7bde --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.7-gmpolf-1.4.8.eb @@ -0,0 +1,23 @@ +name = 'HDF5' +version = '1.8.7' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'gmpolf', 'version': '1.4.8'} +toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['configure_libtool.patch'] + +dependencies = [ + ('zlib', '1.2.7'), + ('Szip', '2.1'), +] + +buildopts = 'V=1 CFLAGS="$CFLAGS -std=c99"' + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-gmpolf-1.4.8.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-gmpolf-1.4.8.eb new file mode 100644 index 0000000000..c3f0738628 --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-gmpolf-1.4.8.eb @@ -0,0 +1,21 @@ +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'gmpolf', 'version': '1.4.8'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.so"] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' -- GitLab From 882adb7aaa539b539d930acce8eab4026ebd2a44 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 12 Dec 2014 15:20:38 +0100 Subject: [PATCH 0206/1217] Fix cairo bug --- easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb | 3 +++ 1 file changed, 3 insertions(+) diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb index 6e47d0bc01..ac1b504419 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb @@ -21,4 +21,7 @@ dependencies = [ ('bzip2', '1.0.6'), ] +# disable symbol lookup, which requires -lbfd, to avoid link issues with (non-PIC) libiberty.a provided by GCC +configopts = "--enable-symbol-lookup=no" + moduleclass = 'vis' -- GitLab From 553ac677c5f24ee837904aea951c3ea15c33aba9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 12 Dec 2014 15:25:42 +0100 Subject: [PATCH 0207/1217] improve error message on automagic fallback to ConfigureMake --- test/easyconfigs/easyconfigs.py | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index c0e5e46e8e..faeb282db5 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -223,8 +223,9 @@ def template_easyconfig_test(self, spec): app_class = get_easyblock_class(easyblock, name=name) # check that automagic fallback to ConfigureMake isn't done (deprecated behaviour) - tup = (spec, easyblock, app_class) - self.assertTrue(easyblock or not app_class is ConfigureMake, "no fallback to ConfigureMake: %s" % str(tup)) + fn = os.path.basename(spec) + error_msg = "%s relies on automagic fallback to ConfigureMake, should use easyblock = 'ConfigureMake' instead" % fn + self.assertTrue(easyblock or not app_class is ConfigureMake, error_msg) app = app_class(ec) -- GitLab From 2f6ba43b700abf69e49d42e119ff9aa4329a4b0b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 12 Dec 2014 16:28:16 +0100 Subject: [PATCH 0208/1217] fix screwup in GLib easyconfig filename --- .../{GLib-2.34.3-gmpolf-1.5.14.eb => GLib-2.34.3-goolf-1.5.14.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/g/GLib/{GLib-2.34.3-gmpolf-1.5.14.eb => GLib-2.34.3-goolf-1.5.14.eb} (100%) diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.34.3-gmpolf-1.5.14.eb b/easybuild/easyconfigs/g/GLib/GLib-2.34.3-goolf-1.5.14.eb similarity index 100% rename from easybuild/easyconfigs/g/GLib/GLib-2.34.3-gmpolf-1.5.14.eb rename to easybuild/easyconfigs/g/GLib/GLib-2.34.3-goolf-1.5.14.eb -- GitLab From 54bec96a5bb77850b120a1a595f2d95ab26aefd3 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 12 Dec 2014 21:09:21 +0100 Subject: [PATCH 0209/1217] add easyblock = 'ConfigureMake' to easyconfigs where it's missing (bis) --- easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gpsmpi-2014.12.eb | 2 ++ .../o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb | 2 ++ easybuild/easyconfigs/p/popt/popt-1.14-iccifort-2015.1.133.eb | 3 ++- easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-GCC-4.9.2.eb | 2 ++ .../easyconfigs/p/pscom/pscom-5.0.44-1-iccifort-2015.1.133.eb | 2 ++ easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-GCC-4.9.2.eb | 2 ++ .../easyconfigs/p/psmpi/psmpi-5.1.0-1-iccifort-2015.1.133.eb | 3 ++- 7 files changed, 14 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gpsmpi-2014.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gpsmpi-2014.12.eb index 702c146a6a..cb01772a4f 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gpsmpi-2014.12.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gpsmpi-2014.12.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.4' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb index 9444634267..1fb935b7e1 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.12' diff --git a/easybuild/easyconfigs/p/popt/popt-1.14-iccifort-2015.1.133.eb b/easybuild/easyconfigs/p/popt/popt-1.14-iccifort-2015.1.133.eb index ca688fee64..5a0c561291 100644 --- a/easybuild/easyconfigs/p/popt/popt-1.14-iccifort-2015.1.133.eb +++ b/easybuild/easyconfigs/p/popt/popt-1.14-iccifort-2015.1.133.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'popt' version = '1.14' @@ -17,4 +19,3 @@ sanity_check_paths = { } moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-GCC-4.9.2.eb b/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-GCC-4.9.2.eb index 7cab517cdf..dfe678ff56 100644 --- a/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-GCC-4.9.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'pscom' version = '5.0.44-1' homepage = 'http://www.par-tec.com' diff --git a/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-iccifort-2015.1.133.eb b/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-iccifort-2015.1.133.eb index 7acf1a6c0f..3e93e9239a 100644 --- a/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-iccifort-2015.1.133.eb +++ b/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-iccifort-2015.1.133.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'pscom' version = '5.0.44-1' homepage = 'http://www.par-tec.com' diff --git a/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-GCC-4.9.2.eb b/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-GCC-4.9.2.eb index cca03fc8d3..c310b1fc80 100644 --- a/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-GCC-4.9.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'psmpi' version = '5.1.0-1' diff --git a/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-iccifort-2015.1.133.eb b/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-iccifort-2015.1.133.eb index 41929f3e0f..2989b452c1 100644 --- a/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-iccifort-2015.1.133.eb +++ b/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-iccifort-2015.1.133.eb @@ -1,5 +1,6 @@ -name = 'psmpi' +easyblock = 'ConfigureMake' +name = 'psmpi' version = '5.1.0-1' homepage = 'https://github.com/ParaStation/psmpi2' -- GitLab From e285b683959a6407a2c13a1dd3aebbd98e6e4bf7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 12 Dec 2014 21:15:33 +0100 Subject: [PATCH 0210/1217] add easyblock = 'ConfigureMake' to popt easyconfig where it's missing --- easybuild/easyconfigs/p/popt/popt-1.16-GCC-4.9.2.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/p/popt/popt-1.16-GCC-4.9.2.eb b/easybuild/easyconfigs/p/popt/popt-1.16-GCC-4.9.2.eb index 9e73b46a1f..a64a52cc7f 100644 --- a/easybuild/easyconfigs/p/popt/popt-1.16-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/p/popt/popt-1.16-GCC-4.9.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'popt' version = "1.16" -- GitLab From 155c5ad7d8c43a093e973063769f2c33ca768761 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 13 Dec 2014 20:19:20 +0100 Subject: [PATCH 0211/1217] stop using deprecated 'makeopts', 'premakeopts' and 'shared_lib_ext' --- .../easyconfigs/h/HDF5/HDF5-1.8.13-intel-2014b.eb | 2 +- .../h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb | 2 +- .../easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb | 2 +- .../i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb | 2 +- .../i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb | 2 +- .../l/libibmad/libibmad-1.3.9-GCC-4.6.3.eb | 12 +++++------- .../l/libibmad/libibmad-1.3.9-GCC-4.7.2.eb | 12 +++++------- .../l/libibumad/libibumad-1.3.8-GCC-4.6.3.eb | 6 +++--- .../l/libibumad/libibumad-1.3.8-GCC-4.7.2.eb | 6 +++--- .../l/libibverbs/libibverbs-1.1.4-GCC-4.6.3.eb | 6 +++--- .../l/libibverbs/libibverbs-1.1.4-GCC-4.7.2.eb | 6 +++--- .../m/MUMPS/MUMPS-4.10.0-ictce-6.2.5-parmetis.eb | 2 +- .../m/Mesa/Mesa-7.11.2-ictce-4.1.13-Python-2.7.3.eb | 2 +- .../m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb | 2 +- .../easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb | 2 +- .../m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb | 2 +- .../easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb | 2 +- .../OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb | 2 +- .../OpenBLAS-0.2.6-cgmpich-1.1.6-LAPACK-3.4.2.eb | 2 +- ...enBLAS-0.2.6-cgmvapich2-1.1.12rc1-LAPACK-3.4.2.eb | 2 +- .../OpenBLAS-0.2.6-cgmvapich2-1.2.7-LAPACK-3.4.2.eb | 2 +- .../OpenBLAS-0.2.6-cgompi-1.1.7-LAPACK-3.4.2.eb | 2 +- .../OpenBLAS-0.2.6-gmpich-1.4.8-LAPACK-3.4.2.eb | 2 +- .../OpenBLAS-0.2.6-gmvapich2-1.7.12-LAPACK-3.4.2.eb | 2 +- ...penBLAS-0.2.6-gmvapich2-1.7.12rc1-LAPACK-3.4.2.eb | 2 +- .../OpenBLAS-0.2.6-gompi-1.3.12-LAPACK-3.4.2.eb | 2 +- .../OpenBLAS-0.2.6-gompi-1.4.10-LAPACK-3.4.2.eb | 2 +- ...enBLAS-0.2.6-gompi-1.4.10-no-OFED-LAPACK-3.4.2.eb | 2 +- .../OpenBLAS-0.2.6-ictce-5.3.0-LAPACK-3.4.2.eb | 2 +- .../OpenBLAS-0.2.8-gompi-1.5.14-LAPACK-3.5.0.eb | 2 +- ...enBLAS-0.2.8-gompi-1.5.14-no-OFED-LAPACK-3.5.0.eb | 2 +- .../OpenBLAS-0.2.8-gompi-1.6.10-LAPACK-3.4.2.eb | 2 +- .../OpenBLAS-0.2.8-gompic-2.6.10-LAPACK-3.4.2.eb | 2 +- .../OpenBLAS-0.2.8-ictce-5.3.0-LAPACK-3.4.2.eb | 2 +- .../OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0.eb | 2 +- .../o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3-no-OFED.eb | 2 +- .../easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb | 2 +- .../o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb | 2 +- .../o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb | 2 +- .../easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb | 2 +- .../o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2-no-OFED.eb | 2 +- .../easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb | 2 +- .../easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb | 2 +- .../o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb | 2 +- .../o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb | 2 +- .../easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb | 2 +- .../o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2-no-OFED.eb | 2 +- .../easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb | 2 +- .../OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb | 2 +- .../easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb | 2 +- .../o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb | 2 +- .../easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb | 2 +- .../easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb | 2 +- .../easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb | 2 +- 54 files changed, 70 insertions(+), 74 deletions(-) diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2014b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2014b.eb index dfd0250c7d..e20cda0940 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2014b.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2014b.eb @@ -16,7 +16,7 @@ patches = [ 'configure_libtool.patch', ] -makeopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' +buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' dependencies = [ ('zlib', '1.2.8'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb index e0eacc6b4c..8ffb9102ba 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2-serial.eb @@ -17,7 +17,7 @@ patches = [ 'configure_libtool.patch', ] -makeopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' +buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' dependencies = [ ('zlib', '1.2.8'), diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb index 029de071fa..5d8a6788d3 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-ictce-7.1.2.eb @@ -16,7 +16,7 @@ patches = [ 'configure_libtool.patch', ] -makeopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' +buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' dependencies = [ ('zlib', '1.2.8'), diff --git a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb index 53a8326dd6..2aebd3c1b6 100644 --- a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb +++ b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb @@ -23,7 +23,7 @@ sources = [SOURCE_TGZ] # gmake hdf5 -- IOR with POSIX, MPIIO, and HDF5 interfaces # gmake ncmpi -- IOR with POSIX, MPIIO, and NCMPI interfaces # gmake all -- IOR with POSIX, MPIIO, HDF5, and NCMPI interfaces -makeopts = ' mpiio' +buildopts = ' mpiio' files_to_copy = [(['src/C/IOR'], 'bin'), "README", "RELEASE_LOG", "UNDOCUMENTED_OPTIONS", "USER_GUIDE", "scripts", "testing"] diff --git a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb index 5f3c436fbb..50f1a0bd7d 100644 --- a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb +++ b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb @@ -23,7 +23,7 @@ sources = [SOURCE_TGZ] # gmake hdf5 -- IOR with POSIX, MPIIO, and HDF5 interfaces # gmake ncmpi -- IOR with POSIX, MPIIO, and NCMPI interfaces # gmake all -- IOR with POSIX, MPIIO, HDF5, and NCMPI interfaces -makeopts = ' mpiio' +buildopts = ' mpiio' files_to_copy = [(['src/C/IOR'], 'bin'), "README", "RELEASE_LOG", "UNDOCUMENTED_OPTIONS", "USER_GUIDE", "scripts", "testing"] diff --git a/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.6.3.eb b/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.6.3.eb index 14ee7cd15e..6978598f17 100644 --- a/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.6.3.eb @@ -13,14 +13,12 @@ toolchain = {'name': 'GCC', 'version': '4.6.3'} sources = [SOURCE_TAR_GZ] source_urls = ['https://www.openfabrics.org/downloads/management/'] -dependencies = [ - ('libibumad', '1.3.8'), - ] +dependencies = [('libibumad', '1.3.8')] sanity_check_paths = { - 'files': ['include/infiniband/mad.h', 'include/infiniband/mad_osd.h', - 'lib/libibmad.a', 'lib/libibmad.%s' % shared_lib_ext], - 'dirs': [], - } + 'files': ['include/infiniband/mad.h', 'include/infiniband/mad_osd.h', + 'lib/libibmad.a', 'lib/libibmad.%s' % SHLIB_EXT], + 'dirs': [], +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.7.2.eb b/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.7.2.eb index a5286010d3..355a23ab84 100644 --- a/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/l/libibmad/libibmad-1.3.9-GCC-4.7.2.eb @@ -13,14 +13,12 @@ toolchain = {'name': 'GCC', 'version': '4.7.2'} sources = [SOURCE_TAR_GZ] source_urls = ['https://www.openfabrics.org/downloads/management/'] -dependencies = [ - ('libibumad', '1.3.8'), - ] +dependencies = [('libibumad', '1.3.8')] sanity_check_paths = { - 'files': ['include/infiniband/mad.h', 'include/infiniband/mad_osd.h', - 'lib/libibmad.a', 'lib/libibmad.%s' % shared_lib_ext], - 'dirs': [], - } + 'files': ['include/infiniband/mad.h', 'include/infiniband/mad_osd.h', + 'lib/libibmad.a', 'lib/libibmad.%s' % SHLIB_EXT], + 'dirs': [], +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.6.3.eb b/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.6.3.eb index 36ad13885d..235f332fbf 100644 --- a/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.6.3.eb @@ -12,8 +12,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['https://www.openfabrics.org/downloads/management/'] sanity_check_paths = { - 'files': ['include/infiniband/umad.h', 'lib/libibumad.a', 'lib/libibumad.%s' % shared_lib_ext], - 'dirs': [], - } + 'files': ['include/infiniband/umad.h', 'lib/libibumad.a', 'lib/libibumad.%s' % SHLIB_EXT], + 'dirs': [], +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.7.2.eb b/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.7.2.eb index f280d555fc..7519907ee4 100644 --- a/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/l/libibumad/libibumad-1.3.8-GCC-4.7.2.eb @@ -12,8 +12,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['https://www.openfabrics.org/downloads/management/'] sanity_check_paths = { - 'files': ['include/infiniband/umad.h', 'lib/libibumad.a', 'lib/libibumad.%s' % shared_lib_ext], - 'dirs': [], - } + 'files': ['include/infiniband/umad.h', 'lib/libibumad.a', 'lib/libibumad.%s' % SHLIB_EXT], + 'dirs': [], +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.6.3.eb b/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.6.3.eb index a0166f7648..4f69234828 100644 --- a/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.6.3.eb @@ -13,8 +13,8 @@ sources = ['%s-%s-1.24.gb89d4d7.tar.gz' % (name, version)] source_urls = [homepage] sanity_check_paths = { - 'files': ['lib/libibverbs.a', 'lib/libibverbs.%s' % shared_lib_ext], - 'dirs': ['bin', 'include/infiniband'] - } + 'files': ['lib/libibverbs.a', 'lib/libibverbs.%s' % SHLIB_EXT], + 'dirs': ['bin', 'include/infiniband'], +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.7.2.eb b/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.7.2.eb index 23eae1bc76..a84a3a6a0a 100644 --- a/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/l/libibverbs/libibverbs-1.1.4-GCC-4.7.2.eb @@ -13,8 +13,8 @@ sources = ['%s-%s-1.24.gb89d4d7.tar.gz' % (name, version)] source_urls = [homepage] sanity_check_paths = { - 'files': ['lib/libibverbs.a', 'lib/libibverbs.%s' % shared_lib_ext], - 'dirs': ['bin', 'include/infiniband'] - } + 'files': ['lib/libibverbs.a', 'lib/libibverbs.%s' % SHLIB_EXT], + 'dirs': ['bin', 'include/infiniband'], +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-ictce-6.2.5-parmetis.eb b/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-ictce-6.2.5-parmetis.eb index 28f165fca1..68ae128bf8 100644 --- a/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-ictce-6.2.5-parmetis.eb +++ b/easybuild/easyconfigs/m/MUMPS/MUMPS-4.10.0-ictce-6.2.5-parmetis.eb @@ -17,6 +17,6 @@ dependencies = [ ] parallel = 1 -makeopts = 'all' +buildopts = 'all' moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.1.13-Python-2.7.3.eb index da570c9a0f..4f8581ed6a 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.1.13-Python-2.7.3.eb @@ -44,7 +44,7 @@ configopts += " --disable-driglx-direct --with-gallium-drivers='' --without-demo # package-config files for os dependencies are in an os specific place preconfigopts = ' PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' -premakeopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' +prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' sanity_check_paths = { 'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h', diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb index a109783953..6c2df30046 100644 --- a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb @@ -22,7 +22,7 @@ dependencies = [('zlib', '1.2.8')] parallel = 1 -makeopts = ' CC="$CC"' +buildopts = ' CC="$CC"' files_to_copy = [ (['mdtest'], 'bin'), diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb index 66f58f3260..d5a5cb84d4 100644 --- a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb @@ -22,7 +22,7 @@ dependencies = [('zlib', '1.2.8')] parallel = 1 -makeopts = ' CC="$CC"' +buildopts = ' CC="$CC"' files_to_copy = [ (['mdtest'], 'bin'), diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb index 2c8d4b291b..aaa3515150 100644 --- a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb @@ -22,7 +22,7 @@ dependencies = [('zlib', '1.2.8')] parallel = 1 -makeopts = ' CC="$CC"' +buildopts = ' CC="$CC"' files_to_copy = [ (['mdtest'], 'bin'), diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb index 9f77339a6f..28fb4bd0ad 100644 --- a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb @@ -22,7 +22,7 @@ dependencies = [('zlib', '1.2.8')] parallel = 1 -makeopts = ' CC="$CC"' +buildopts = ' CC="$CC"' files_to_copy = [ (['mdtest'], 'bin'), diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb index 1fb935b7e1..97ff1d323e 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb @@ -44,7 +44,7 @@ installopts = "USE_THREAD=1 PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmpich-1.1.6-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmpich-1.1.6-LAPACK-3.4.2.eb index 8991571a29..0f0ad8e226 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmpich-1.1.6-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmpich-1.1.6-LAPACK-3.4.2.eb @@ -46,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.1.12rc1-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.1.12rc1-LAPACK-3.4.2.eb index d1b894ad4f..01d8ea4334 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.1.12rc1-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.1.12rc1-LAPACK-3.4.2.eb @@ -46,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.2.7-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.2.7-LAPACK-3.4.2.eb index 2a74f0df57..7782701cd4 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.2.7-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgmvapich2-1.2.7-LAPACK-3.4.2.eb @@ -44,7 +44,7 @@ installopts = "PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgompi-1.1.7-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgompi-1.1.7-LAPACK-3.4.2.eb index db8c2a2ae9..578e937455 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgompi-1.1.7-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-cgompi-1.1.7-LAPACK-3.4.2.eb @@ -46,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich-1.4.8-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich-1.4.8-LAPACK-3.4.2.eb index 3e70f7b290..2f4a7d5c4f 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich-1.4.8-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmpich-1.4.8-LAPACK-3.4.2.eb @@ -46,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12-LAPACK-3.4.2.eb index eeff1a610e..4153c047a3 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12-LAPACK-3.4.2.eb @@ -46,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12rc1-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12rc1-LAPACK-3.4.2.eb index c49d67d7dd..8cedf904c5 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12rc1-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gmvapich2-1.7.12rc1-LAPACK-3.4.2.eb @@ -46,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.3.12-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.3.12-LAPACK-3.4.2.eb index 3418f3debf..11d637fd23 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.3.12-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.3.12-LAPACK-3.4.2.eb @@ -46,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-LAPACK-3.4.2.eb index c2e3d7dd6c..bd9785f7cc 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-LAPACK-3.4.2.eb @@ -46,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-no-OFED-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-no-OFED-LAPACK-3.4.2.eb index 3f7e1416e6..26e470d952 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-no-OFED-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-gompi-1.4.10-no-OFED-LAPACK-3.4.2.eb @@ -46,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-ictce-5.3.0-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-ictce-5.3.0-LAPACK-3.4.2.eb index a4874f4acc..16af9a1249 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-ictce-5.3.0-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.6-ictce-5.3.0-LAPACK-3.4.2.eb @@ -46,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-LAPACK-3.5.0.eb index 2e2671a3ee..c183debe56 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-LAPACK-3.5.0.eb @@ -45,7 +45,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-no-OFED-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-no-OFED-LAPACK-3.5.0.eb index 4d5c3d17b5..9e6ecd2ba6 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-no-OFED-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.5.14-no-OFED-LAPACK-3.5.0.eb @@ -45,7 +45,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.6.10-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.6.10-LAPACK-3.4.2.eb index ad039bff77..ba2f665b5b 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.6.10-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompi-1.6.10-LAPACK-3.4.2.eb @@ -45,7 +45,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompic-2.6.10-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompic-2.6.10-LAPACK-3.4.2.eb index 94eeca4083..3cf7d53637 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompic-2.6.10-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-gompic-2.6.10-LAPACK-3.4.2.eb @@ -46,7 +46,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-ictce-5.3.0-LAPACK-3.4.2.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-ictce-5.3.0-LAPACK-3.4.2.eb index 7986d74efa..dbc806f461 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-ictce-5.3.0-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.8-ictce-5.3.0-LAPACK-3.4.2.eb @@ -45,7 +45,7 @@ installopts = threading + " PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0.eb index 77ba44c791..d0e54d0995 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.9-GCC-4.8.3-LAPACK-3.5.0.eb @@ -44,7 +44,7 @@ installopts = "USE_THREAD=1 PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3-no-OFED.eb index e0f830eab3..e568f8411e 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3-no-OFED.eb @@ -19,7 +19,7 @@ configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mca_common_sm", "mpi_cxx", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mca_common_sm", "mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "open-pal", "open-rte"]], 'dirs': ["include/openmpi/ompi/mpi/cxx"], diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb index 5a1b40ca4c..7a690ab154 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb @@ -23,7 +23,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mca_common_sm", "mpi_cxx", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mca_common_sm", "mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "open-pal", "open-rte"]], 'dirs': ["include/openmpi/ompi/mpi/cxx"], diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb index 3e27daefc2..65a5c05009 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb @@ -26,7 +26,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mca_common_sm", "mpi_cxx", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mca_common_sm", "mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "otfaux", "otf", diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb index 736321bbb0..e8dab7a8ac 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb @@ -27,7 +27,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb index 50044641a4..bd0832e690 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb @@ -27,7 +27,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2-no-OFED.eb index 1157c6a64a..983eb22945 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2-no-OFED.eb @@ -21,7 +21,7 @@ configopts += '--disable-dlopen ' # statically link component, don't do dynamic sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_f77" ,"mpi_f90", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77" ,"mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb index 6f9c77110f..1505eba3ad 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb @@ -27,7 +27,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb index c5baab15d2..cbe729175a 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb @@ -30,7 +30,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + ["include/%s.h" % x for x in ["mpi-ext", "mpif-common", "mpif-config", "mpif", "mpif-mpi-io", "mpi", "mpi_portable_platform"]], diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb index b2e9553b14..90dc3e3449 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb @@ -20,7 +20,7 @@ configopts += '--disable-dlopen ' # statically link component, don't do dynamic sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb index a1c91281fa..5e9b5fcda8 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb @@ -20,7 +20,7 @@ configopts += '--disable-dlopen ' # statically link component, don't do dynamic sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb index ebf8a047ae..a0f0714984 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb @@ -26,7 +26,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2-no-OFED.eb index 0fa765f1f1..6cac76d97d 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2-no-OFED.eb @@ -23,7 +23,7 @@ dependencies = [('hwloc', '1.8.1')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb index 65c16a9637..4cad97973f 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb @@ -29,7 +29,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb index cb819404af..905ab46028 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb @@ -26,7 +26,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mca_common_sm", "mpi_cxx", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mca_common_sm", "mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "otfaux", diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb index 0530b57251..a9ae46a639 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb @@ -29,7 +29,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_mpifh", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb index 6ca36b4be9..5f84390df9 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb @@ -29,7 +29,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_mpifh", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb index 1b2a3512d0..7431826b3c 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb @@ -27,7 +27,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_mpifh", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb index 4a8aad95e6..5101540bd3 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-foss-2014b.eb @@ -31,7 +31,7 @@ dependencies = [ # RELION expects FLTK to be in external/fltk-1.3.0 configopts = ['--enable-mpi --enable-openmp && ln -s $EBROOTFLTK/include external/fltk-1.3.0'] -makeopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11 -lXft -lfontconfig -lXext -lXinerama" ' +buildopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11 -lXft -lfontconfig -lXext -lXinerama" ' installopts = " && cp %(installdir)s/bin/relion_maingui %(installdir)s/bin/relion " sanity_check_paths = { diff --git a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb index ef1b4125d7..7b003f1cbf 100644 --- a/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb +++ b/easybuild/easyconfigs/r/RELION/RELION-1.3-intel-2014b.eb @@ -32,7 +32,7 @@ dependencies = [ # RELION expects FLTK to be in external/fltk-1.3.0 configopts = ['--enable-mpi --enable-openmp && ln -s $EBROOTFLTK/include external/fltk-1.3.0'] -makeopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11 -lXft -lfontconfig -lXext -lXinerama" ' +buildopts = 'LIBS="-lfftw3_threads -lfftw3 -lm -lpthread -lfltk -lX11 -lXft -lfontconfig -lXext -lXinerama" ' # users expect the maingui binary to be called relion installopts = " && cp %(installdir)s/bin/relion_maingui %(installdir)s/bin/relion " -- GitLab From a7a1524a77bd3c76d43f625f6bc8e6be03df3bd4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 13 Dec 2014 20:20:34 +0100 Subject: [PATCH 0212/1217] enable triggering errors on use of deprecated functionality by defining $EASYBUILD_DEPRECATED prior to initialising the EasyBuild configuration --- test/easyconfigs/easyconfigs.py | 2 ++ 1 file changed, 2 insertions(+) diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index faeb282db5..0463ba8631 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -59,6 +59,8 @@ single_tests_ok = True class EasyConfigTest(TestCase): """Baseclass for easyconfig testcases.""" + os.environ['EASYBUILD_DEPRECATED'] = '2.0' + # initialize configuration (required for e.g. default modules_tool setting) eb_go = eboptions.parse_options() config.init(eb_go.options, eb_go.get_options_by_section('config')) -- GitLab From d463add9ebfe55e6a065352f926cb92019f31225 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 15 Dec 2014 12:02:31 +0100 Subject: [PATCH 0213/1217] fix style issues in ANTs easyconfig, add missing CMake easyconfig --- .../a/ANTs/ANTs-2.1.0rc3-goolf-1.5.14.eb | 28 +++++++++++++++++++ ...ANTs-v2.1.0rc3-82-ga1547fe-goolf-1.5.14.eb | 17 ----------- .../c/CMake/CMake-3.0.2-goolf-1.5.14.eb | 20 +++++++++++++ 3 files changed, 48 insertions(+), 17 deletions(-) create mode 100644 easybuild/easyconfigs/a/ANTs/ANTs-2.1.0rc3-goolf-1.5.14.eb delete mode 100644 easybuild/easyconfigs/a/ANTs/ANTs-v2.1.0rc3-82-ga1547fe-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.0.2-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/a/ANTs/ANTs-2.1.0rc3-goolf-1.5.14.eb b/easybuild/easyconfigs/a/ANTs/ANTs-2.1.0rc3-goolf-1.5.14.eb new file mode 100644 index 0000000000..61fc318236 --- /dev/null +++ b/easybuild/easyconfigs/a/ANTs/ANTs-2.1.0rc3-goolf-1.5.14.eb @@ -0,0 +1,28 @@ +easyblock = 'CMakeMake' + +name = 'ANTs' +version = '2.1.0rc3' + +homepage = 'http://stnava.github.io/ANTs/' +description = """ANTs extracts information from complex datasets that include imaging. ANTs is useful for managing, + interpreting and visualizing multidimensional data.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True} + +source_urls = ['https://github.com/stnava/ANTs/archive/'] +sources = ['v%(version)s.tar.gz'] + +builddependencies = [('CMake', '3.0.2')] + +skipsteps = ['install'] +buildopts = ' && mkdir -p %(installdir)s && cp -a * %(installdir)s/' + +separate_build_dir = True + +sanity_check_paths = { + 'files': ['bin/ANTS'], + 'dirs': ['lib'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/a/ANTs/ANTs-v2.1.0rc3-82-ga1547fe-goolf-1.5.14.eb b/easybuild/easyconfigs/a/ANTs/ANTs-v2.1.0rc3-82-ga1547fe-goolf-1.5.14.eb deleted file mode 100644 index c4a05245f1..0000000000 --- a/easybuild/easyconfigs/a/ANTs/ANTs-v2.1.0rc3-82-ga1547fe-goolf-1.5.14.eb +++ /dev/null @@ -1,17 +0,0 @@ -name = 'ANTs' -version = '2.1.0rc3-82-ga1547fe' - -homepage = 'http://stnava.github.io/ANTs/' -description = """ANTs extracts information from complex datasets that include imaging. ANTs is useful for managing, interpreting and visualizing multidimensional data.""" - -toolchain = {'name': 'goolf', 'version': '1.5.14'} -toolchainopts = {'pic': True} -easyblock = 'CMakeMake' - -sources = ['stnava-ANTs-v%(version)s.tar.gz'] - -skipsteps = ['install'] -buildopts = ' && cp -r * %(installdir)s' -builddependencies = [('CMake', '2.8.12')] -configopts = "-DCMAKE_C_COMPILER=`which gcc` -DCMAKE_CXX_COMPILER=`which g++`" -separate_build_dir = True diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.0.2-goolf-1.5.14.eb b/easybuild/easyconfigs/c/CMake/CMake-3.0.2-goolf-1.5.14.eb new file mode 100644 index 0000000000..3af7544fc1 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.0.2-goolf-1.5.14.eb @@ -0,0 +1,20 @@ +name = 'CMake' +version = '3.0.2' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From 2bf4621563edc1bda11c50a78af4054591d07f86 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 15 Dec 2014 12:19:22 +0100 Subject: [PATCH 0214/1217] explicitely specify ConfigureMake easyblock, automagic fallback is deprecated --- easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb | 2 ++ easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2014b.eb | 2 ++ .../GObject-Introspection-1.42.0-intel-2014b.eb | 2 ++ easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2014b.eb | 2 ++ .../easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb | 2 ++ easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb | 2 ++ easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2014b.eb | 2 ++ easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb | 2 ++ easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb | 1 + easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb | 2 ++ easybuild/easyconfigs/p/PCRE/PCRE-8.35-intel-2014b.eb | 2 ++ easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb | 2 ++ easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb | 2 ++ 13 files changed, 25 insertions(+) diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb b/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb index ac1b504419..6f945ad25b 100644 --- a/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb +++ b/easybuild/easyconfigs/c/cairo/cairo-1.12.18-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "cairo" version = '1.12.18' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2014b.eb b/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2014b.eb index 6a2dd6f9f2..be10bd30c3 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2014b.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GLib' version = '2.40.0' diff --git a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb index bb74f6f055..eb6899b805 100644 --- a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb +++ b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.42.0-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GObject-Introspection' version = '1.42.0' diff --git a/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2014b.eb b/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2014b.eb index c070d72dcd..b673ea80e1 100644 --- a/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2014b.eb +++ b/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'GTS' version = '0.7.6' diff --git a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb index 594e6f8142..9439f32c2b 100644 --- a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb +++ b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Ghostscript' version = '9.14' diff --git a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb index f87c237077..c23e8f17a1 100644 --- a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb +++ b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Graphviz' version = '2.38.0' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2014b.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2014b.eb index b5dab16898..a0c6e92339 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2014b.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'gettext' version = '0.19.2' diff --git a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb index f608dab2a5..ba609bc0fd 100644 --- a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb +++ b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'HarfBuzz' version = '0.9.35' diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb index cb623e327f..6dcd19de43 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb @@ -9,6 +9,7 @@ # This work implements a part of the HPCBIOS project and is a component of the policy: # http://hpcbios.readthedocs.org/en/latest/ ## +easyblock = 'ConfigureMake' name = 'LibTIFF' version = '4.0.3' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb index e0d78b7d80..81f2d376c9 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libffi' version = '3.1' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.35-intel-2014b.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.35-intel-2014b.eb index 919d282faa..fd30422f0b 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.35-intel-2014b.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.35-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'PCRE' version = '8.35' diff --git a/easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb b/easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb index 0cadb6fba6..eba092fa74 100644 --- a/easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Pango' version = '1.36.7' diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb b/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb index 681e7f4094..dc69def433 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "pixman" version = '0.32.6' -- GitLab From 28cb53247ffbf6a4e28661ac2f1303d7c3447d87 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 15 Dec 2014 17:20:27 +0100 Subject: [PATCH 0215/1217] fix CLHEP by adding -gcc to $CXXFLAGS --- easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb index 61c66a1cb8..6d8acd7afc 100644 --- a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb @@ -15,6 +15,6 @@ sources = [SOURCELOWER_TGZ] source_urls = ['http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/'] # CLHEP compiles with icc instead of icpc -configopts = "CXX=icc" +configopts = 'CXX="$CC" CXXFLAGS="$CXXFLAGS -gcc"' moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb index d1dda5abc6..eef6276574 100644 --- a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb @@ -16,6 +16,6 @@ sources = [SOURCELOWER_TGZ] source_urls = ['http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/'] # CLHEP compiles with icc instead of icpc -configopts = "CXX=icc" +configopts = 'CXX="$CC" CXXFLAGS="$CXXFLAGS -gcc"' moduleclass = 'numlib' -- GitLab From ab6eb508157270249726aec3fab2ae2fe9ac1e35 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 15 Dec 2014 17:32:43 +0100 Subject: [PATCH 0216/1217] add 'parallel = 1', since parallel build appear broken --- easybuild/easyconfigs/a/ANTs/ANTs-2.1.0rc3-goolf-1.5.14.eb | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/a/ANTs/ANTs-2.1.0rc3-goolf-1.5.14.eb b/easybuild/easyconfigs/a/ANTs/ANTs-2.1.0rc3-goolf-1.5.14.eb index 61fc318236..1e8a2bf6f6 100644 --- a/easybuild/easyconfigs/a/ANTs/ANTs-2.1.0rc3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/a/ANTs/ANTs-2.1.0rc3-goolf-1.5.14.eb @@ -16,7 +16,9 @@ sources = ['v%(version)s.tar.gz'] builddependencies = [('CMake', '3.0.2')] skipsteps = ['install'] -buildopts = ' && mkdir -p %(installdir)s && cp -a * %(installdir)s/' +buildopts = ' && mkdir -p %(installdir)s && cp -r * %(installdir)s/' + +parallel = 1 separate_build_dir = True -- GitLab From 8bf50a63355802d84acb0d7a2f47681f5d8541a5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 15 Dec 2014 17:34:53 +0100 Subject: [PATCH 0217/1217] add easyblock = 'ConfigureMake' in Szip easyconfig file --- easybuild/easyconfigs/s/Szip/Szip-2.1-gmpolf-1.4.8.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-gmpolf-1.4.8.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-gmpolf-1.4.8.eb index c3f0738628..b6931f92b4 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-gmpolf-1.4.8.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Szip' version = '2.1' -- GitLab From 9e8461fce3ad613b55d608b4769eb8fdbef046c0 Mon Sep 17 00:00:00 2001 From: pescobar Date: Mon, 15 Dec 2014 20:56:36 +0100 Subject: [PATCH 0218/1217] Chimera easyconfig --- .../c/Chimera/Chimera-1.10-linux_x86_64.eb | 27 +++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb diff --git a/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb b/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb new file mode 100644 index 0000000000..ca756f9a77 --- /dev/null +++ b/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb @@ -0,0 +1,27 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +name = "Chimera" +version = "1.10" +versionsuffix = "-linux_x86_64" + +homepage = 'https://www.cgl.ucsf.edu/chimera/' +description = """ UCSF Chimera is a highly extensible program for interactive visualization + and analysis of molecular structures and related data, including density maps, supramolecular + assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. """ + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['%(namelower)s-%(version)s%(versionsuffix)s.bin'] + +# unzip is required to uncompress the provided .bin file +osdependencies = ['unzip'] + +sanity_check_paths = { + 'files': ["bin/chimera"], + 'dirs': [""] +} + +moduleclass = 'bio' -- GitLab From 9291dd6680ee4df0e8cc3e3bb0bcf8146b1acac6 Mon Sep 17 00:00:00 2001 From: pescobar Date: Mon, 15 Dec 2014 21:13:18 +0100 Subject: [PATCH 0219/1217] added download url. Fixed sanity check --- easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb b/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb index ca756f9a77..5e9ad2796e 100644 --- a/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb +++ b/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb @@ -14,6 +14,7 @@ description = """ UCSF Chimera is a highly extensible program for interactive vi toolchain = {'name': 'dummy', 'version': 'dummy'} +# no public download URL. Go to https://www.cgl.ucsf.edu/chimera/download.html sources = ['%(namelower)s-%(version)s%(versionsuffix)s.bin'] # unzip is required to uncompress the provided .bin file @@ -21,7 +22,7 @@ osdependencies = ['unzip'] sanity_check_paths = { 'files': ["bin/chimera"], - 'dirs': [""] + 'dirs': [] } moduleclass = 'bio' -- GitLab From b168e656d677d85d04ff9e9e64eb3860a3c646b2 Mon Sep 17 00:00:00 2001 From: pescobar Date: Mon, 15 Dec 2014 22:06:40 +0100 Subject: [PATCH 0220/1217] new Velvet easyconfigs --- ...1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_31.eb | 26 +++++++++++++++++++ ...1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_57.eb | 25 ++++++++++++++++++ ...1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_63.eb | 25 ++++++++++++++++++ 3 files changed, 76 insertions(+) create mode 100644 easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_31.eb create mode 100644 easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_57.eb create mode 100644 easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_63.eb diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_31.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_31.eb new file mode 100644 index 0000000000..586a750173 --- /dev/null +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_31.eb @@ -0,0 +1,26 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 The Cyprus Institute +# Authors:: Thekla Loizou , Andreas Panteli +# License:: MIT/GPL +# +## + +name = 'Velvet' +version = '1.2.10' +versionsuffix = '-mt-MAXKMERLENGTH_31' + +homepage = 'http://www.ebi.ac.uk/~zerbino/velvet/' +description = """Sequence assembler for very short reads""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True, 'openmp': True} + +sources = ['%(namelower)s_%(version)s.tgz'] +source_urls = ['http://www.ebi.ac.uk/~zerbino/%(namelower)s'] + +# by default MAXKMERLENGTH=31 but defined here to keep all the easyconfigs homogeneous +buildopts = "OPENMP=1 MAXKMERLENGTH=%s" % versionsuffix.split('_')[1] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_57.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_57.eb new file mode 100644 index 0000000000..5224ce9530 --- /dev/null +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_57.eb @@ -0,0 +1,25 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 The Cyprus Institute +# Authors:: Thekla Loizou , Andreas Panteli +# License:: MIT/GPL +# +## + +name = 'Velvet' +version = '1.2.10' +versionsuffix = '-mt-MAXKMERLENGTH_57' + +homepage = 'http://www.ebi.ac.uk/~zerbino/velvet/' +description = """Sequence assembler for very short reads""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True, 'openmp': True} + +sources = ['%(namelower)s_%(version)s.tgz'] +source_urls = ['http://www.ebi.ac.uk/~zerbino/%(namelower)s'] + +buildopts = "OPENMP=1 MAXKMERLENGTH=%s" % versionsuffix.split('_')[1] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_63.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_63.eb new file mode 100644 index 0000000000..0a5d4a1eec --- /dev/null +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_63.eb @@ -0,0 +1,25 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 The Cyprus Institute +# Authors:: Thekla Loizou , Andreas Panteli +# License:: MIT/GPL +# +## + +name = 'Velvet' +version = '1.2.10' +versionsuffix = '-mt-MAXKMERLENGTH_63' + +homepage = 'http://www.ebi.ac.uk/~zerbino/velvet/' +description = """Sequence assembler for very short reads""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True, 'openmp': True} + +sources = ['%(namelower)s_%(version)s.tgz'] +source_urls = ['http://www.ebi.ac.uk/~zerbino/%(namelower)s'] + +buildopts = "OPENMP=1 MAXKMERLENGTH=%s" % versionsuffix.split('_')[1] + +moduleclass = 'bio' -- GitLab From 6e5de397deaf1d06311884d6e3d152aea262cd11 Mon Sep 17 00:00:00 2001 From: pescobar Date: Mon, 15 Dec 2014 22:12:58 +0100 Subject: [PATCH 0221/1217] switched to $CFLAGS as @boegel suggested --- .../easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb index e814686b4d..e04f16e4d5 100644 --- a/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb @@ -25,7 +25,7 @@ start_dir = 'source' # # We overwrite CPPFLAGS in the makefile with easybuild toolchainopts which will be something like # CPPFLAGS=-O3 -funroll-loops -march=native" -makeopts = 'CPPFLAGS="$CPPFLAGS"' +makeopts = 'CPPFLAGS="$CFLAGS"' files_to_copy = [(['dialign-tx'], 'bin')] -- GitLab From 8e554770a3c4adde5713a15945123a20fabd3238 Mon Sep 17 00:00:00 2001 From: pescobar Date: Mon, 15 Dec 2014 22:17:19 +0100 Subject: [PATCH 0222/1217] switched makeopts to buildopts --- .../easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb index e04f16e4d5..f6fd6246c4 100644 --- a/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/DIALIGN-TX/DIALIGN-TX-1.0.2-goolf-1.4.10.eb @@ -25,7 +25,7 @@ start_dir = 'source' # # We overwrite CPPFLAGS in the makefile with easybuild toolchainopts which will be something like # CPPFLAGS=-O3 -funroll-loops -march=native" -makeopts = 'CPPFLAGS="$CFLAGS"' +buildopts = 'CPPFLAGS="$CFLAGS"' files_to_copy = [(['dialign-tx'], 'bin')] -- GitLab From 004dcb46c34669c6a072bb421cc59f51a23d989e Mon Sep 17 00:00:00 2001 From: pescobar Date: Mon, 15 Dec 2014 22:22:14 +0100 Subject: [PATCH 0223/1217] renamed as @boegel suggested --- ...XKMERLENGTH_31.eb => Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb} | 0 ...XKMERLENGTH_57.eb => Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb} | 0 ...XKMERLENGTH_63.eb => Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb} | 0 3 files changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/v/Velvet/{Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_31.eb => Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb} (100%) rename easybuild/easyconfigs/v/Velvet/{Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_57.eb => Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb} (100%) rename easybuild/easyconfigs/v/Velvet/{Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_63.eb => Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb} (100%) diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_31.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb similarity index 100% rename from easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_31.eb rename to easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_57.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb similarity index 100% rename from easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_57.eb rename to easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_63.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb similarity index 100% rename from easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-MAXKMERLENGTH_63.eb rename to easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb -- GitLab From f2c5190c915e5549b0efabd4d64b981195bb1cc2 Mon Sep 17 00:00:00 2001 From: pescobar Date: Mon, 15 Dec 2014 22:23:28 +0100 Subject: [PATCH 0224/1217] fixed versionsuffix --- .../v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb | 2 +- .../v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb | 2 +- .../v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb index 586a750173..9c3573c3bc 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb @@ -9,7 +9,7 @@ name = 'Velvet' version = '1.2.10' -versionsuffix = '-mt-MAXKMERLENGTH_31' +versionsuffix = '-mt-kmer_31' homepage = 'http://www.ebi.ac.uk/~zerbino/velvet/' description = """Sequence assembler for very short reads""" diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb index 5224ce9530..3556eea248 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb @@ -9,7 +9,7 @@ name = 'Velvet' version = '1.2.10' -versionsuffix = '-mt-MAXKMERLENGTH_57' +versionsuffix = '-mt-kmer_57' homepage = 'http://www.ebi.ac.uk/~zerbino/velvet/' description = """Sequence assembler for very short reads""" diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb index 0a5d4a1eec..56dd2ed094 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb @@ -9,7 +9,7 @@ name = 'Velvet' version = '1.2.10' -versionsuffix = '-mt-MAXKMERLENGTH_63' +versionsuffix = '-mt-kmer_63' homepage = 'http://www.ebi.ac.uk/~zerbino/velvet/' description = """Sequence assembler for very short reads""" -- GitLab From 6e11230329cbe3a475365f0fc64b10d1b790b276 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 15 Dec 2014 22:32:09 +0100 Subject: [PATCH 0225/1217] add patch to fix broken test in Go --- .../easyconfigs/g/Go/Go-1.2.1-GCC-4.8.2.eb | 2 + .../g/Go/Go-1.2.1_fix-time-test.patch | 66 +++++++++++++++++++ 2 files changed, 68 insertions(+) create mode 100644 easybuild/easyconfigs/g/Go/Go-1.2.1_fix-time-test.patch diff --git a/easybuild/easyconfigs/g/Go/Go-1.2.1-GCC-4.8.2.eb b/easybuild/easyconfigs/g/Go/Go-1.2.1-GCC-4.8.2.eb index e4b4cdae45..4987f6eb38 100644 --- a/easybuild/easyconfigs/g/Go/Go-1.2.1-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/g/Go/Go-1.2.1-GCC-4.8.2.eb @@ -10,6 +10,8 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} sources = ['%(namelower)s%(version)s.src.tar.gz'] source_urls = ['https://go.googlecode.com/files'] +patches = ['Go-%(version)s_fix-time-test.patch'] + sanity_check_paths = { 'files': ['bin/go', 'bin/gofmt'], 'dirs': ['api', 'doc', 'include', 'pkg'], diff --git a/easybuild/easyconfigs/g/Go/Go-1.2.1_fix-time-test.patch b/easybuild/easyconfigs/g/Go/Go-1.2.1_fix-time-test.patch new file mode 100644 index 0000000000..15d912a647 --- /dev/null +++ b/easybuild/easyconfigs/g/Go/Go-1.2.1_fix-time-test.patch @@ -0,0 +1,66 @@ +see https://github.com/golang/go/issues/8547 and https://github.com/golang/go/commit/5e70140521ac2e5c004de8cd61321d3a51619ae6 +diff --git a/src/pkg/time/time_test.go b/src/pkg/time/time_test.go +index a7c6d55..ecc5c8f 100644 +--- a/src/pkg/time/time_test.go ++++ b/src/pkg/time/time_test.go +@@ -183,39 +183,45 @@ func TestParse(t *testing.T) { + } + } + +-func TestParseInSydney(t *testing.T) { +- loc, err := LoadLocation("Australia/Sydney") ++func TestParseInLocation(t *testing.T) { ++ // Check that Parse (and ParseInLocation) understand that ++ // Feb 01 AST (Arabia Standard Time) and Feb 01 AST (Atlantic Standard Time) ++ // are in different time zones even though both are called AST ++ ++ baghdad, err := LoadLocation("Asia/Baghdad") + if err != nil { + t.Fatal(err) + } + +- // Check that Parse (and ParseInLocation) understand +- // that Feb EST and Aug EST are different time zones in Sydney +- // even though both are called EST. +- t1, err := ParseInLocation("Jan 02 2006 MST", "Feb 01 2013 EST", loc) ++ t1, err := ParseInLocation("Jan 02 2006 MST", "Feb 01 2013 AST", baghdad) + if err != nil { + t.Fatal(err) + } +- t2 := Date(2013, February, 1, 00, 00, 00, 0, loc) ++ t2 := Date(2013, February, 1, 00, 00, 00, 0, baghdad) + if t1 != t2 { +- t.Fatalf("ParseInLocation(Feb 01 2013 EST, Sydney) = %v, want %v", t1, t2) ++ t.Fatalf("ParseInLocation(Feb 01 2013 AST, Baghdad) = %v, want %v", t1, t2) + } + _, offset := t1.Zone() +- if offset != 11*60*60 { +- t.Fatalf("ParseInLocation(Feb 01 2013 EST, Sydney).Zone = _, %d, want _, %d", offset, 11*60*60) ++ if offset != 3*60*60 { ++ t.Fatalf("ParseInLocation(Feb 01 2013 AST, Baghdad).Zone = _, %d, want _, %d", offset, 3*60*60) ++ } ++ ++ blancSablon, err := LoadLocation("America/Blanc-Sablon") ++ if err != nil { ++ t.Fatal(err) + } + +- t1, err = ParseInLocation("Jan 02 2006 MST", "Aug 01 2013 EST", loc) ++ t1, err = ParseInLocation("Jan 02 2006 MST", "Feb 01 2013 AST", blancSablon) + if err != nil { + t.Fatal(err) + } +- t2 = Date(2013, August, 1, 00, 00, 00, 0, loc) ++ t2 = Date(2013, February, 1, 00, 00, 00, 0, blancSablon) + if t1 != t2 { +- t.Fatalf("ParseInLocation(Aug 01 2013 EST, Sydney) = %v, want %v", t1, t2) ++ t.Fatalf("ParseInLocation(Feb 01 2013 AST, Blanc-Sablon) = %v, want %v", t1, t2) + } + _, offset = t1.Zone() +- if offset != 10*60*60 { +- t.Fatalf("ParseInLocation(Aug 01 2013 EST, Sydney).Zone = _, %d, want _, %d", offset, 10*60*60) ++ if offset != -4*60*60 { ++ t.Fatalf("ParseInLocation(Feb 01 2013 AST, Blanc-Sablon).Zone = _, %d, want _, %d", offset, -4*60*60) + } + } + -- GitLab From bfcbaa98256ed50810637fb54cbfed4962bb980d Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Tue, 16 Dec 2014 09:04:01 +0100 Subject: [PATCH 0226/1217] Cuby 4 --- easybuild/easyconfigs/c/Cuby/Cuby-4.eb | 27 ++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/c/Cuby/Cuby-4.eb diff --git a/easybuild/easyconfigs/c/Cuby/Cuby-4.eb b/easybuild/easyconfigs/c/Cuby/Cuby-4.eb new file mode 100644 index 0000000000..df3ddacfad --- /dev/null +++ b/easybuild/easyconfigs/c/Cuby/Cuby-4.eb @@ -0,0 +1,27 @@ +easyblock = "PackedBinary" + +name = "Cuby" +version = '4' + +homepage = 'http://cuby.molecular.cz/cuby4/' +description = """Cuby is a computational chemistry framework written in ruby. + For users, it provides an unified access to various computational + methods available in difefrent software packages. For developers, + Cuby is much more - it is a complex framework that provides + object-oriented access to the data enetering the calculations and + to their results, making it easy to create new computational + protocols by combining existing blocks of the framework.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +#Source can be obtained via http://cuby.molecular.cz/?page=Downloads +sources = ['cuby4.tgz'] + +dependencies = [('Ruby', '2.1.5', '-intel-2014b')] + +sanity_check_paths = { + 'files': ['cuby4%s' % x for x in ['', '.rb' ]], + 'dirs': ['classes'], +} + +moduleclass = 'chem' -- GitLab From 7fab968501875d52065f821bdd6a9512e2edce0c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bal=C3=A1zs=20Hajgat=C3=B3?= Date: Tue, 16 Dec 2014 09:26:17 +0100 Subject: [PATCH 0227/1217] Update ffmpeg-2.4-intel-2014b.eb --- easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014b.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014b.eb b/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014b.eb index d735964164..a9bbbfc3c1 100644 --- a/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014b.eb +++ b/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ffmpeg' version = '2.4' -- GitLab From fc46cbc01f46fd54d38f313041393327f3afce24 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bal=C3=A1zs=20Hajgat=C3=B3?= Date: Tue, 16 Dec 2014 09:27:36 +0100 Subject: [PATCH 0228/1217] Update JasPer-1.900.1-intel-2014b.eb --- easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2014b.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2014b.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2014b.eb index dae0c952ca..d148f3dede 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2014b.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2014b.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'JasPer' version = '1.900.1' -- GitLab From aab3dc9dcdceb3d1bef6ad20c93bc17f0b9a554d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bal=C3=A1zs=20Hajgat=C3=B3?= Date: Tue, 16 Dec 2014 09:52:31 +0100 Subject: [PATCH 0229/1217] Update tcsh-6.18.01-intel-2014b.eb --- easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb index 561bbdc7fd..648d6836c1 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2014b.eb @@ -9,6 +9,7 @@ # This work implements a part of the HPCBIOS project and is a component of the policy: # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' name = 'tcsh' version = '6.18.01' -- GitLab From a5900d22e3b8f943f02c9ac777f9c83060c044e7 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bal=C3=A1zs=20Hajgat=C3=B3?= Date: Tue, 16 Dec 2014 09:55:09 +0100 Subject: [PATCH 0230/1217] Update Ruby-2.1.5-intel-2014b.eb --- easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb index 643d229d54..32eca44aae 100644 --- a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb @@ -6,6 +6,8 @@ # License: MIT # Authors: Aaron Zauner # ---------------------------------------------------------------------------- +easyblock = 'ConfigureMake' + name = 'Ruby' version = '2.1.5' -- GitLab From 369f8d7d1d2f58e6263d9b52290334fe601786b1 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 16 Dec 2014 15:04:01 +0100 Subject: [PATCH 0231/1217] style cleanup in GHC easyconfigs --- .../g/GHC/GHC-7.6.2-goalf-1.1.0-no-OFED.eb | 24 +++++-------------- .../g/GHC/GHC-7.6.2-goolf-1.4.10.eb | 24 +++++-------------- .../g/GHC/GHC-7.8.3-goalf-1.1.0-no-OFED.eb | 24 +++++-------------- .../g/GHC/GHC-7.8.3-goolf-1.4.10.eb | 24 +++++-------------- 4 files changed, 24 insertions(+), 72 deletions(-) diff --git a/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goalf-1.1.0-no-OFED.eb index 5c100c1d83..9a068844e1 100644 --- a/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goalf-1.1.0-no-OFED.eb @@ -23,23 +23,11 @@ builddependencies = [ configopts = " --enable-error-on-warning=no" sanity_check_paths = { - 'files': ["bin/%s" % x for x in - ['ghc', - 'ghc-7.6.2', - 'ghci', - 'ghci-7.6.2', - 'ghc-pkg', - 'ghc-pkg-7.6.2', - 'haddock', - 'haddock-ghc-7.6.2', - 'hp2ps', - 'hpc', - 'hsc2hs', - 'runghc', - 'runghc-7.6.2', - 'runhaskell']] + - [], - 'dirs':[] - } + 'files': ["bin/%s" % x for x in ['ghc', 'ghc-%(version)s', 'ghci', 'ghci-%(version)s', 'ghc-pkg', + 'ghc-pkg-%(version)s', 'haddock', 'haddock-ghc-%(version)s', + 'hp2ps', 'hpc', 'hsc2hs', 'runghc', 'runghc-%(version)s', + 'runhaskell']], + 'dirs': [], +} moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goolf-1.4.10.eb index 1a4178063b..36f3fcc67a 100644 --- a/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goolf-1.4.10.eb @@ -22,23 +22,11 @@ builddependencies = [ configopts = " --enable-error-on-warning=no" sanity_check_paths = { - 'files': ["bin/%s" % x for x in - ['ghc', - 'ghc-7.6.2', - 'ghci', - 'ghci-7.6.2', - 'ghc-pkg', - 'ghc-pkg-7.6.2', - 'haddock', - 'haddock-ghc-7.6.2', - 'hp2ps', - 'hpc', - 'hsc2hs', - 'runghc', - 'runghc-7.6.2', - 'runhaskell']] + - [], - 'dirs':[] - } + 'files': ["bin/%s" % x for x in ['ghc', 'ghc-%(version)s', 'ghci', 'ghci-%(version)s', 'ghc-pkg', + 'ghc-pkg-%(version)s', 'haddock', 'haddock-ghc-%(version)s', + 'hp2ps', 'hpc', 'hsc2hs', 'runghc', 'runghc-%(version)s', + 'runhaskell']], + 'dirs': [], +} moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goalf-1.1.0-no-OFED.eb index 3323ecebdb..8fecfa9a31 100644 --- a/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goalf-1.1.0-no-OFED.eb @@ -22,23 +22,11 @@ builddependencies = [ configopts = " --enable-error-on-warning=no" sanity_check_paths = { - 'files': ["bin/%s" % x for x in - ['ghc', - 'ghc-7.8.3', - 'ghci', - 'ghci-7.8.3', - 'ghc-pkg', - 'ghc-pkg-7.8.3', - 'haddock', - 'haddock-ghc-7.8.3', - 'hp2ps', - 'hpc', - 'hsc2hs', - 'runghc', - 'runghc-7.8.3', - 'runhaskell']] + - [], - 'dirs':[] - } + 'files': ["bin/%s" % x for x in ['ghc', 'ghc-%(version)s', 'ghci', 'ghci-%(version)s', 'ghc-pkg', + 'ghc-pkg-%(version)s', 'haddock', 'haddock-ghc-%(version)s', + 'hp2ps', 'hpc', 'hsc2hs', 'runghc', 'runghc-%(version)s', + 'runhaskell']], + 'dirs': [], +} moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goolf-1.4.10.eb index 7d9830c026..ea5b087cdd 100644 --- a/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goolf-1.4.10.eb @@ -22,23 +22,11 @@ builddependencies = [ configopts = " --enable-error-on-warning=no" sanity_check_paths = { - 'files': ["bin/%s" % x for x in - ['ghc', - 'ghc-7.8.3', - 'ghci', - 'ghci-7.8.3', - 'ghc-pkg', - 'ghc-pkg-7.8.3', - 'haddock', - 'haddock-ghc-7.8.3', - 'hp2ps', - 'hpc', - 'hsc2hs', - 'runghc', - 'runghc-7.8.3', - 'runhaskell']] + - [], - 'dirs':[] - } + 'files': ["bin/%s" % x for x in ['ghc', 'ghc-%(version)s', 'ghci', 'ghci-%(version)s', 'ghc-pkg', + 'ghc-pkg-%(version)s', 'haddock', 'haddock-ghc-%(version)s', + 'hp2ps', 'hpc', 'hsc2hs', 'runghc', 'runghc-%(version)s', + 'runhaskell']], + 'dirs': [], +} moduleclass = 'compiler' -- GitLab From d122ac2553cb5821ebff2ecc6f148ac183004634 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 16 Dec 2014 20:16:43 +0100 Subject: [PATCH 0232/1217] only set $EASYBUILD_DEPRECATED for Python 2.6 and up --- test/easyconfigs/easyconfigs.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index 0463ba8631..4b9aff3b0e 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -59,7 +59,8 @@ single_tests_ok = True class EasyConfigTest(TestCase): """Baseclass for easyconfig testcases.""" - os.environ['EASYBUILD_DEPRECATED'] = '2.0' + if LooseVersion(sys.version) >= LooseVersion('2.6'): + os.environ['EASYBUILD_DEPRECATED'] = '2.0' # initialize configuration (required for e.g. default modules_tool setting) eb_go = eboptions.parse_options() -- GitLab From 07355575fb7d19c00e1010e8d3b05de17f0e18cf Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 16 Dec 2014 20:46:57 +0100 Subject: [PATCH 0233/1217] Add easyblock parameter --- easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb index ec081dd4ac..a50c05d1d7 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb @@ -9,6 +9,7 @@ # This work implements a part of the HPCBIOS project and is a component of the policy: # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html ## +easyblock = 'ConfigureMake' name = 'gnuplot' version = '4.6.6' -- GitLab From 7b3dcf51d9f1f697235d17ad9bfd0ed5be4639d9 Mon Sep 17 00:00:00 2001 From: pescobar Date: Tue, 16 Dec 2014 20:55:34 +0100 Subject: [PATCH 0234/1217] added easyblock = 'ConfigureMake' --- easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb index 27ecc64563..93dfcd4cac 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'HTSlib' version = '1.1' -- GitLab From 2c2371cdd51ad9203732ac5d5aa2cf2b8c673121 Mon Sep 17 00:00:00 2001 From: pescobar Date: Tue, 16 Dec 2014 21:07:33 +0100 Subject: [PATCH 0235/1217] added easyblock=configuremake line --- .../g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb | 6 ++++-- .../g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb | 4 +++- 2 files changed, 7 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb index 8caec6cbce..16bdffb2f2 100644 --- a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb @@ -3,17 +3,19 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'GMAP-GSNAP' version = '2014-01-21' homepage = 'http://research-pub.gene.com/gmap/' description = ''' GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences - GSNAP: Genomic Short-read Nucleotide Alignment Program ''' + GSNAP: Genomic Short-read Nucleotide Alignment Program toolchain = {'name': 'goolf', 'version': '1.4.10'} -# with this deps you can use standard compressed files +# with these deps you can use standard compressed files # to support files in gobby format take a look at README for extra dependencies # http://research-pub.gene.com/gmap/src/README dependencies = [ diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb index ae02b74dda..dd92913268 100644 --- a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'GMAP-GSNAP' version = "2014-06-10" @@ -13,7 +15,7 @@ description = ''' toolchain = {'name': 'goolf', 'version': '1.4.10'} -# with this deps you can use standard compressed files +# with these deps you can use standard compressed files # to support files in gobby format take a look at README for extra dependencies # http://research-pub.gene.com/gmap/src/README dependencies = [ -- GitLab From 30182a7a3b430cb8643723b891e7f317e0daee36 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 16 Dec 2014 21:40:37 +0100 Subject: [PATCH 0236/1217] fix use of deprecated makeopts and fallback to default ConfigureMake easyblock --- .../easyconfigs/h/h5py/h5py-2.2.1-goolf-1.4.10-Python-2.7.3.eb | 2 +- .../easyconfigs/h/h5py/h5py-2.2.1-ictce-4.1.13-Python-2.7.3.eb | 2 +- easybuild/easyconfigs/l/libxc/libxc-2.0.3-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/l/libxc/libxc-2.0.3-ictce-4.1.13.eb | 2 ++ 4 files changed, 6 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.2.1-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-goolf-1.4.10-Python-2.7.3.eb index 804c376cf4..9852693c15 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.2.1-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-goolf-1.4.10-Python-2.7.3.eb @@ -20,7 +20,7 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % (python, pythonver) # make sure that MPI features are enabled (new in h5py v2.2) -makeopts = '--mpi' +buildopts = '--mpi' dependencies = [ (python, pythonver), diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-4.1.13-Python-2.7.3.eb index d366366f0e..7f4bdd782b 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-4.1.13-Python-2.7.3.eb @@ -20,7 +20,7 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % (python, pythonver) # make sure that MPI features are enabled (new in h5py v2.2) -makeopts = '--mpi' +buildopts = '--mpi' dependencies = [ (python, pythonver), diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.3-goolf-1.4.10.eb index eeb4529f02..119c74e739 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.3-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.3' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.3-ictce-4.1.13.eb index 321de01d28..64b37d779c 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.3-ictce-4.1.13.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'libxc' version = '2.0.3' -- GitLab From c3824180f995d1cf22f0a4fa1bb5f8f7b7b48d6e Mon Sep 17 00:00:00 2001 From: pescobar Date: Tue, 16 Dec 2014 21:41:31 +0100 Subject: [PATCH 0237/1217] fixed typowq --- .../g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb index 16bdffb2f2..d455c7c728 100644 --- a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb @@ -11,7 +11,7 @@ version = '2014-01-21' homepage = 'http://research-pub.gene.com/gmap/' description = ''' GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences - GSNAP: Genomic Short-read Nucleotide Alignment Program + GSNAP: Genomic Short-read Nucleotide Alignment Program ''' toolchain = {'name': 'goolf', 'version': '1.4.10'} -- GitLab From 6a7357d92bbd92c4e7c300afefc776e117bbb178 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 16 Dec 2014 21:47:35 +0100 Subject: [PATCH 0238/1217] fix deprecated fallback to ConfigureMake easyblock --- .../easyconfigs/h/hwloc/hwloc-1.9-iccifort-2013_sp1.4.211.eb | 3 ++- .../o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb | 3 ++- .../o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb | 2 ++ .../o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb | 3 ++- 4 files changed, 8 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.9-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.9-iccifort-2013_sp1.4.211.eb index a40a4c8053..528befdb9a 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.9-iccifort-2013_sp1.4.211.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.9-iccifort-2013_sp1.4.211.eb @@ -1,4 +1,5 @@ -# Built with EasyBuild version 1.15.2 on 2014-11-26_14-48-19 +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.9' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb index f080d8cdf4..69e33124b4 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb @@ -1,4 +1,5 @@ -# Built with EasyBuild version 1.15.2 on 2014-11-26_19-40-34 +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.5' versionsuffix = '-no-OFED' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb index da5ae78308..0eee441dd4 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.6.5' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb index 0ed7516048..75c509e034 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb @@ -1,4 +1,5 @@ -# Built with EasyBuild version 1.15.2 on 2014-11-26_14-55-01 +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.8.3' versionsuffix = '-no-OFED' -- GitLab From 87fa9aeef69bf1110d002871433e2154e189424b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 16 Dec 2014 21:56:10 +0100 Subject: [PATCH 0239/1217] replace shared_lib_ext with SHLIB_EXT --- .../o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb | 2 +- .../o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb index 69e33124b4..4d2c94f271 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb @@ -20,7 +20,7 @@ dependencies = [('hwloc', '1.9')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mca_common_sm", "mpi_cxx", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mca_common_sm", "mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "otfaux", diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb index 75c509e034..9beccee040 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb @@ -22,7 +22,7 @@ dependencies = [('hwloc', '1.9')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_mpifh", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + -- GitLab From 1163cbf1334e26efa62a52d36f968d55a4cf09e7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 16 Dec 2014 21:58:43 +0100 Subject: [PATCH 0240/1217] replace makeopts by buildopts --- easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb index 90de128946..798d558246 100644 --- a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb @@ -21,7 +21,7 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} source_urls = ['https://github.com/bedops/bedops/archive/'] sources = ['v%(version)s.tar.gz'] -makeopts = ' static && make install' +buildopts = ' static && make install' parallel = 1 -- GitLab From 870af6f048d6e669640bdfea49568223f0b838ef Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 16 Dec 2014 22:02:35 +0100 Subject: [PATCH 0241/1217] replace shared_lib_ext with SHLIB_EXT --- .../o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb | 2 +- .../o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb index 0eee441dd4..5164388442 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb @@ -26,7 +26,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mca_common_sm", "mpi_cxx", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mca_common_sm", "mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "otfaux", diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb index bce53677ed..efe454a9c2 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb @@ -26,7 +26,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_mpifh", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + -- GitLab From 567e509a0378c804ebaf414e244037b861fd2c3c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 16 Dec 2014 22:13:54 +0100 Subject: [PATCH 0242/1217] fix deprecated fallback to ConfigureMake easyblock --- .../o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb index efe454a9c2..23f7fbec5a 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = '1.8.3' -- GitLab From 5eead9d0f5904a739cbf52842e09330365319942 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 16 Dec 2014 22:38:17 +0100 Subject: [PATCH 0243/1217] fix style issues --- easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb index 49bf289dde..1a8d964de1 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb @@ -5,7 +5,7 @@ # Modified by: Robert Schmidt # Ottawa Hospital Research Institute - Bioinformatics Team -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'Bowtie2' version = '2.2.4' @@ -19,7 +19,7 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin toolchain = {'name': 'goolf', 'version': '1.4.10'} -sources = ['%s-%s-source.zip' % (name.lower(), version)] +sources = ['%(namelower)s-%(version)s-source.zip'] source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] files_to_copy = [ -- GitLab From 5fa64ec496dc601202635b76962ba115515f7a31 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Tue, 16 Dec 2014 23:08:02 +0100 Subject: [PATCH 0244/1217] Comments added --- easybuild/easyconfigs/a/ant/ant-1.9.3-Java-1.7.0_60.eb | 4 ++-- easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_60.eb | 4 ++-- .../easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb | 8 ++++++-- 3 files changed, 10 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/a/ant/ant-1.9.3-Java-1.7.0_60.eb b/easybuild/easyconfigs/a/ant/ant-1.9.3-Java-1.7.0_60.eb index a757cbe9a0..ad986bd576 100644 --- a/easybuild/easyconfigs/a/ant/ant-1.9.3-Java-1.7.0_60.eb +++ b/easybuild/easyconfigs/a/ant/ant-1.9.3-Java-1.7.0_60.eb @@ -7,8 +7,8 @@ description = """Apache Ant is a Java library and command-line tool whose missio toolchain = {'name': 'dummy', 'version': ''} -sources = ['apache-%s-%s-src.tar.gz' % (name, version)] -source_urls = ['http://archive.apache.org/dist/%s/source/' % name] +sources = ['apache-%(name)s-%(version)s-src.tar.gz'] +source_urls = ['http://archive.apache.org/dist/%(name)s/source/'] java = 'Java' javaver = '1.7.0_60' diff --git a/easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_60.eb b/easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_60.eb index 19940e6a0f..64746de053 100644 --- a/easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_60.eb +++ b/easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_60.eb @@ -8,8 +8,8 @@ description = """A programmer-oriented testing framework for Java.""" toolchain = {'name': 'dummy', 'version': ''} -sources = ['%s-%s.jar' % (name.lower(), version)] -source_urls = ['http://search.maven.org/remotecontent?filepath=junit/junit/%s/' % version] +sources = ['%(namelower)s-%(version)s.jar'] +source_urls = ['http://search.maven.org/remotecontent?filepath=junit/junit/%(version)s/'] java = 'Java' javaver = '1.7.0_60' diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb index c1fcff8987..6629dbb938 100644 --- a/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb @@ -13,9 +13,9 @@ toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'opt': True, 'optarch': True} sources = [SOURCELOWER_ZIP] -source_urls = [('http://sourceforge.net/projects/opencvlibrary/files/opencv-unix/%s' % version, 'download')] +source_urls = [('http://sourceforge.net/projects/opencvlibrary/files/opencv-unix/%(version)s', 'download')] -patches = ['OpenCV-%s_with_IPP.patch' % version] +patches = ['OpenCV-%(version)s_with_IPP.patch'] osdependencies = ['gtk2-devel'] @@ -45,6 +45,8 @@ dependencies = [ preconfigopts = 'export IPPROOT=$EBROOTICC/ipp && ' configopts = '-DCMAKE_BUILD_TYPE=RELEASE ' +configopts += '-DBUILD_PYTHON_SUPPORT=ON ' +configopts += '-DPYTHON_PACKAGES_PATH=$EBROOTPYTHON/lib/python%s ' % pythonshortver configopts += '-DZLIB_LIBRARY=$EBROOTZLIB/lib/libz.so ' configopts += '-DZLIB_INCLUDE_DIR=$EBROOTZLIB/include ' configopts += '-DTIFF_LIBRARY=$EBROOTLIBTIFF/lib/libtiff.so ' @@ -56,6 +58,8 @@ configopts += '-DJPEG_INCLUDE_DIR=$EBROOTLIBJPEGMINTURBO/include ' configopts += '-DJASPER_LIBRARY=$EBROOTJASPER/lib/libjasper.a ' configopts += '-DJASPER_INCLUDE_DIR=$EBROOTJASPER/include ' configopts += '-DWITH_IPP=ON ' +configopts += '-DENABLE_SSE=ON -DENABLE_SSE2=ON -DENABLE_SSE3=ON ' +configopts += '-DWITH_CUDA=OFF ' sanity_check_paths = { 'files': ['lib/libopencv_core.so'] + -- GitLab From 609a9692c777716c44e719b32376fd8e3d3403a5 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Wed, 17 Dec 2014 03:28:44 +0100 Subject: [PATCH 0245/1217] add wherever: easyblock = 'ConfigureMake' Signed-off-by: Fotis Georgatos --- .../easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb | 2 ++ .../easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb | 2 ++ .../easyconfigs/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb | 2 ++ .../m/MAFFT/MAFFT-7.130-with-extensions-ictce-5.3.0.eb | 2 ++ easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb | 2 ++ 11 files changed, 22 insertions(+) diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb index 60550f5635..2bc0ea310e 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'Exonerate' version = '2.2.0' diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb index 69f1442377..36527565d8 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'Exonerate' version = '2.2.0' diff --git a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb index a9915dbdff..a3b3378d12 100644 --- a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = "FSA" version = "1.15.8" diff --git a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb index 037a69fcc4..04a32282f2 100644 --- a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = "FSA" version = "1.15.8" diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb index 766222f0f1..fa3f5214e9 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'Infernal' version = "1.1" diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb index b9331ab8e9..47503953c4 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'Infernal' version = "1.1" diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb index e64ab0b0d9..bb45fb46c0 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'Infernal' version = "1.1" diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb index 2aaa4dd946..5f9369ccab 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'Infernal' version = "1.1" diff --git a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-with-extensions-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-with-extensions-ictce-5.3.0.eb index 7fd327efda..6bf747d607 100644 --- a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-with-extensions-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-with-extensions-ictce-5.3.0.eb @@ -3,6 +3,8 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel +easyblock = 'ConfigureMake' + name = 'MAFFT' version = '7.130' versionsuffix = '-with-extensions' diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb index e04563db6e..19e446bc55 100644 --- a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = "SMALT" version = "0.7.5" diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb index 1930c64969..ea469d6b78 100644 --- a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = "SMALT" version = "0.7.5" -- GitLab From 7003265903b25767ff4d133ea36905dae918d6d4 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Wed, 17 Dec 2014 03:40:22 +0100 Subject: [PATCH 0246/1217] fix headers and trim whitespace Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb | 4 ++-- easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb | 4 ++-- .../i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb | 4 ++-- easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb | 4 ++-- easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb | 4 ++-- easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb | 4 ++-- .../easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb | 3 ++- .../easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb | 1 - easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb | 4 ++-- easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb | 4 ++-- easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb | 4 ++-- easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb | 4 ++-- 12 files changed, 22 insertions(+), 22 deletions(-) diff --git a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb index a3b3378d12..0f49be8035 100644 --- a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2014 University of Luxembourg, Swiss Institute of Bioinformatics -# Authors:: Fotis Georgatos, Pablo Escobar Lopez +# Copyright:: Copyright 2012-2014 Uni.Lu/NTUA, Swiss Institute of Bioinformatics +# Authors:: Fotis Georgatos , Pablo Escobar Lopez # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb index 04a32282f2..27159a0ac8 100644 --- a/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FSA/FSA-1.15.8-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2014 University of Luxembourg, Swiss Institute of Bioinformatics -# Authors:: Fotis Georgatos, Pablo Escobar Lopez +# Copyright:: Copyright 2012-2014 Uni.Lu/NTUA, Swiss Institute of Bioinformatics +# Authors:: Fotis Georgatos , Pablo Escobar Lopez # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb index fa3f5214e9..67c9b4b47c 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goalf-1.1.0-no-OFED.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb index 47503953c4..33a8943618 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb index bb45fb46c0..aa9857ce93 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-4.0.6.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb index 5f9369ccab..10d6e8c986 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb index b6c3429f3e..051737c067 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb @@ -17,7 +17,8 @@ version = '1.1rc1' homepage = 'http://infernal.janelia.org/' description = """Infernal ('INFERence of RNA ALignment') is for searching DNA sequence databases -for RNA structure and sequence similarities.""" + for RNA structure and sequence similarities.""" + toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True} diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb index 705db63559..d47730c4ff 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb @@ -19,7 +19,6 @@ homepage = 'http://infernal.janelia.org/' description = """Infernal ('INFERence of RNA ALignment') is for searching DNA sequence databases for RNA structure and sequence similarities.""" - toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'pic': True} diff --git a/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb index da877e2d72..59d3a92f69 100644 --- a/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PRANK/PRANK-130820-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb index a40acd6d3c..cc4ff83fdd 100644 --- a/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PRANK/PRANK-130820-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb index 19e446bc55..a2509710ab 100644 --- a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb index ea469d6b78..97b9385894 100644 --- a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # -- GitLab From 6fbb974b9beb13756601b96573d59a50fcb5c4de Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 17 Dec 2014 08:52:34 +0100 Subject: [PATCH 0247/1217] fix deprecated fallback to ConfigureMake easyblock in CMake easyconfig --- easybuild/easyconfigs/c/CMake/CMake-3.0.2-goolf-1.5.14.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.0.2-goolf-1.5.14.eb b/easybuild/easyconfigs/c/CMake/CMake-3.0.2-goolf-1.5.14.eb index 3af7544fc1..86c6c20869 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-3.0.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-3.0.2-goolf-1.5.14.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CMake' version = '3.0.2' -- GitLab From 83b025c92657488e953c628823c70824f37b72f9 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Wed, 17 Dec 2014 11:02:24 +0100 Subject: [PATCH 0248/1217] Boegels comments added --- easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb index 6629dbb938..3da865854a 100644 --- a/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb @@ -46,7 +46,8 @@ preconfigopts = 'export IPPROOT=$EBROOTICC/ipp && ' configopts = '-DCMAKE_BUILD_TYPE=RELEASE ' configopts += '-DBUILD_PYTHON_SUPPORT=ON ' -configopts += '-DPYTHON_PACKAGES_PATH=$EBROOTPYTHON/lib/python%s ' % pythonshortver +configopts += '-DPYTHON_PACKAGES_PATH=$EBROOTPYTHON/lib/python%s/site-packages ' % pythonshortver +configopts += '-DBUILD_NEW_PYTHON_SUPPORT=ON ' configopts += '-DZLIB_LIBRARY=$EBROOTZLIB/lib/libz.so ' configopts += '-DZLIB_INCLUDE_DIR=$EBROOTZLIB/include ' configopts += '-DTIFF_LIBRARY=$EBROOTLIBTIFF/lib/libtiff.so ' -- GitLab From 37db1354cc9e0317fdcbf9f30e406701ff0c922b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 17 Dec 2014 11:39:35 +0100 Subject: [PATCH 0249/1217] fix remark w.r.t. commented out dep --- easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb index eeb8aa96e3..04b605f5a4 100644 --- a/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb @@ -16,7 +16,6 @@ dependencies = [ ('CLHEP', '2.1.1.0'), ('ROOT', 'v5.34.01'), ('CMake', '2.8.4'), -# ('libXt', '1.1.4'), ] buildopts = "CPATH=$EBROOTROOT/include/root:$CPATH" -- GitLab From e95af2cfa8a05173c1afa6597474ad1c743808dc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 17 Dec 2014 11:44:14 +0100 Subject: [PATCH 0250/1217] remove buildopts for ROOT $CPATH, should be included in ROOT module instead --- easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb index 04b605f5a4..1b62309c54 100644 --- a/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb @@ -18,8 +18,6 @@ dependencies = [ ('CMake', '2.8.4'), ] -buildopts = "CPATH=$EBROOTROOT/include/root:$CPATH" - parallel = 1 moduleclass = 'cae' -- GitLab From ad70a71933a0733795ac15a2293b962d010dc00f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 17 Dec 2014 11:45:16 +0100 Subject: [PATCH 0251/1217] remove buildopts in GATE easyconfig that are handled by GATE easyblock --- easybuild/easyconfigs/g/GATE/GATE-6.2-ictce-4.0.6.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GATE/GATE-6.2-ictce-4.0.6.eb index 720671b961..3fe22c082c 100644 --- a/easybuild/easyconfigs/g/GATE/GATE-6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2-ictce-4.0.6.eb @@ -20,6 +20,4 @@ dependencies = [ ('CMake', '2.8.4'), ] -buildopts = 'V=1 CXX="$CXX" CXXFLAGS="$CXXFLAGS -gcc -DGC_DEFAULT_PLATFORM=\\\'openPBS\\\'" LD="$CXX -L$EBROOTICC/compiler/lib/intel64"' - moduleclass = 'cae' -- GitLab From 2843e396e0e57601760446fcaf99a230c69787dc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 17 Dec 2014 11:53:04 +0100 Subject: [PATCH 0252/1217] fix deprecated fallback to ConfigureMake easyblock in CLHEP easyconfigs --- .../easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goalf-1.1.0-no-OFED.eb | 2 ++ easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb | 2 ++ 4 files changed, 8 insertions(+) diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goalf-1.1.0-no-OFED.eb index 8a5facff39..d48a6dc1a5 100644 --- a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goalf-1.1.0-no-OFED.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CLHEP' version = '2.1.1.0' diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goolf-1.4.10.eb index f9f4f41e38..44f5feeb1c 100644 --- a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CLHEP' version = '2.1.1.0' diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb index 71db56ea69..6d8acd7afc 100644 --- a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-4.0.6.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CLHEP' version = '2.1.1.0' diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb index f022e8c51b..eef6276574 100644 --- a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-ictce-5.3.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'CLHEP' version = '2.1.1.0' -- GitLab From c67d9da5f1433b68af8a1bbf22ba141cc37f2b2a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 17 Dec 2014 12:01:37 +0100 Subject: [PATCH 0253/1217] fix WRF/WPS download URLs --- .../easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb | 2 +- easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb | 2 +- easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb | 2 +- easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb | 2 +- .../easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb | 2 +- easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb | 2 +- easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb | 2 +- easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb | 2 +- easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb | 2 +- easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb | 2 +- easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb | 2 +- easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb | 2 +- easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb | 2 +- easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb | 2 +- .../easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb | 2 +- easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb | 2 +- easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb | 2 +- easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb | 2 +- .../easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb | 2 +- easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb | 2 +- easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb | 2 +- easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb | 2 +- easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb | 2 +- easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb | 2 +- easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb | 2 +- easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb | 2 +- easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb | 2 +- easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb | 2 +- easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb | 2 +- easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb | 2 +- easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb | 2 +- easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb | 2 +- 32 files changed, 32 insertions(+), 32 deletions(-) diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb index bf9ebc38cd..853e2f41c0 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] buildtype = "dmpar" versionsuffix = '-%s' % buildtype diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb index cf9f032fe1..d853580031 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] buildtype = "dmpar" versionsuffix = '-%s' % buildtype diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb index 8431eafd57..6b56e57e10 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] buildtype = "dmpar" versionsuffix = '-%s' % buildtype diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb index 9a70c0a0be..67bb02d604 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] buildtype = "dmpar" versionsuffix = '-%s' % buildtype diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb index 9e0cde67a1..18c6bd43e4 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb index 38cbdd299d..7c52991cfb 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb index ceaf726698..820346017d 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb index ef8b3b3cc6..610fbb0bc5 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb index a520db3494..a1a0ac2954 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb index a11ffd3dd5..9c1f592e6a 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'iqacml', 'version': '3.7.3'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb index 3819367697..b71384fa9b 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb index daef6c10e6..3e2acac5f7 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb index 7981e0271c..357df0d625 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # WPS v3.5.1 tarball was changed at some point, a previous version had checksum 0dd6b0b51321c836d3e60764f00ecb85 checksums = ['ce0eb551d29e04f688e02d522d327c2c'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb index f332d97a3e..9e4efb1191 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # WPS v3.5.1 tarball was changed at some point, a previous version had checksum 0dd6b0b51321c836d3e60764f00ecb85 checksums = ['ce0eb551d29e04f688e02d522d327c2c'] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb index cbe8459962..fd6567eda0 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb index ed91ae6945..5314a46556 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb index c3795e834f..745124269e 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb index 7c8dcaae6f..68ae9eadde 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb index 1173c7f617..2c0b5f721e 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] netcdf_version = '4.2' diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb index f105c2bc7f..4d83adb5c1 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb index 12ed056cc6..c33775c147 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb index 84094255a4..6ca52d50b4 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb index 227be5752c..2ecf98d856 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb index 458c18466a..d3bc9ddce2 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'iqacml', 'version': '3.7.3'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb index 50f973fe2a..a5ff2235fd 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb index e7fbb9722a..b789d96e90 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb index 7dbefef99f..a4a958faaf 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb index 1449f6bc08..c30f0fe947 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb index e3b04c023c..e96b53dd2f 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'goolf', 'version': '1.5.14'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb index 52493be663..9f3edf98c3 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb index f02edb4567..1b921da46b 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb index 3fa4476f24..38a576a4ab 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb @@ -10,7 +10,7 @@ toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www.mmm.ucar.edu/wrf/src/'] +source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] -- GitLab From 63d68cb669f7ec416e7177399dc412b6a20102cc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 17 Dec 2014 12:07:20 +0100 Subject: [PATCH 0254/1217] retain fallback source URL for WRF/WPS --- .../easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb | 5 ++++- .../easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb | 5 ++++- .../easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb | 5 ++++- .../easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb | 5 ++++- .../easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb | 5 ++++- .../easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb | 5 ++++- easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb | 5 ++++- 32 files changed, 128 insertions(+), 32 deletions(-) diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb index 853e2f41c0..0c0831472f 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] buildtype = "dmpar" versionsuffix = '-%s' % buildtype diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb index d853580031..3b965cb042 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] buildtype = "dmpar" versionsuffix = '-%s' % buildtype diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb index 6b56e57e10..78ed56dc90 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] buildtype = "dmpar" versionsuffix = '-%s' % buildtype diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb index 67bb02d604..d64c83159c 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] buildtype = "dmpar" versionsuffix = '-%s' % buildtype diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb index 18c6bd43e4..003449e4ee 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb index 7c52991cfb..2a18400e37 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb index 820346017d..161a1623fd 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb index 610fbb0bc5..d9fd18721f 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb @@ -11,7 +11,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb index a1a0ac2954..751251a2f2 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb index 9c1f592e6a..2eb02ef3e8 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'iqacml', 'version': '3.7.3'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb index b71384fa9b..f3b36000b9 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb index 3e2acac5f7..41300edffd 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb index 357df0d625..485de44f03 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # WPS v3.5.1 tarball was changed at some point, a previous version had checksum 0dd6b0b51321c836d3e60764f00ecb85 checksums = ['ce0eb551d29e04f688e02d522d327c2c'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb index 9e4efb1191..5a73672d07 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # WPS v3.5.1 tarball was changed at some point, a previous version had checksum 0dd6b0b51321c836d3e60764f00ecb85 checksums = ['ce0eb551d29e04f688e02d522d327c2c'] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb index fd6567eda0..55c9090355 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb index 5314a46556..e4fa546f43 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb index 745124269e..dea425ef3e 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb index 68ae9eadde..4feb926732 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb index 2c0b5f721e..0f5db45d1f 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] netcdf_version = '4.2' diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb index 4d83adb5c1..cd9c026b07 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb index c33775c147..6036cc3695 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb index 6ca52d50b4..be74956012 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb index 2ecf98d856..82949e688c 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb index d3bc9ddce2..d56d0d7b2e 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'iqacml', 'version': '3.7.3'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb index a5ff2235fd..ba3c82bad3 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb index b789d96e90..41c5c771b9 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb index a4a958faaf..876887783b 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb index c30f0fe947..e57fe620a0 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb index e96b53dd2f..3b2b8ef24d 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'goolf', 'version': '1.5.14'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb index 9f3edf98c3..0de8d2cb85 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb index 1b921da46b..404c7d4b08 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb index 38a576a4ab..011841b2c3 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb @@ -10,7 +10,10 @@ toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = ['http://www2.mmm.ucar.edu/wrf/src/'] +source_urls = [ + http://www2.mmm.ucar.edu/wrf/src/, + http://www.mmm.ucar.edu/wrf/src/, +] # csh is used by WRF install scripts builddependencies = [('tcsh', '6.18.01')] -- GitLab From cf58d361e4a32d4f6e413e66eef3ac12629a8799 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 17 Dec 2014 12:10:53 +0100 Subject: [PATCH 0255/1217] fix quoting in WRF/WPS source URLs --- .../easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb | 4 ++-- .../easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb | 4 ++-- .../easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb | 4 ++-- .../easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb | 4 ++-- easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb | 4 ++-- 32 files changed, 64 insertions(+), 64 deletions(-) diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb index 0c0831472f..6dec18fa36 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] buildtype = "dmpar" diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb index 3b965cb042..358a8dd26d 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-goolf-1.4.10-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] buildtype = "dmpar" diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb index 78ed56dc90..c6888e98ca 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-3.2.2.u3-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] buildtype = "dmpar" diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb index d64c83159c..0e47915802 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.3.1-ictce-5.3.0-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] buildtype = "dmpar" diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb index 003449e4ee..c92992f5a7 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4-goalf-1.1.0-no-OFED-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb index 2a18400e37..295ae8c118 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4-goolf-1.4.10-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb index 161a1623fd..be3566f62b 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-3.2.2.u3-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb index d9fd18721f..b40541f0a2 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4-ictce-5.3.0-dmpar.eb @@ -12,8 +12,8 @@ toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb index 751251a2f2..8e3d2604d5 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb index 2eb02ef3e8..7d70493e14 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb index f3b36000b9..aed3bf66ad 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-4.1.13-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb index 41300edffd..67bdbc3366 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.5-ictce-5.3.0-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] patches = ['WPS_netCDF-Fortran_seperate_path.patch'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb index 485de44f03..2be0977a7f 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-4.1.13-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # WPS v3.5.1 tarball was changed at some point, a previous version had checksum 0dd6b0b51321c836d3e60764f00ecb85 checksums = ['ce0eb551d29e04f688e02d522d327c2c'] diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb index 5a73672d07..40eaf8e5e6 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.5.1-ictce-5.3.0-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': True} sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # WPS v3.5.1 tarball was changed at some point, a previous version had checksum 0dd6b0b51321c836d3e60764f00ecb85 checksums = ['ce0eb551d29e04f688e02d522d327c2c'] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb index 55c9090355..4108dab25a 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goalf-1.1.0-no-OFED-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # csh is used by WRF install scripts diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb index e4fa546f43..ac201744e6 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-goolf-1.4.10-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # csh is used by WRF install scripts diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb index dea425ef3e..eeb8fd0f17 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-3.2.2.u3-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # csh is used by WRF install scripts diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb index 4feb926732..6243841c8d 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.3.1-ictce-5.3.0-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # csh is used by WRF install scripts diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb index 0f5db45d1f..f1d896a412 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4-goalf-1.1.0-no-OFED-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] netcdf_version = '4.2' diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb index cd9c026b07..90972b76b0 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4-goolf-1.4.10-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # csh is used by WRF install scripts diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb index 6036cc3695..b2316db8a4 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-3.2.2.u3-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # csh is used by WRF install scripts diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb index be74956012..3d5729d791 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4-ictce-5.3.0-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # csh is used by WRF install scripts diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb index 82949e688c..6c03d82854 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4.1-ictce-5.3.0-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # csh is used by WRF install scripts diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb index d56d0d7b2e..5a2accb533 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.4.1-iqacml-3.7.3-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # csh is used by WRF install scripts diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb index ba3c82bad3..1839047837 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5-goolf-1.4.10-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # csh is used by WRF install scripts diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb index 41c5c771b9..ddf90400b4 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-4.1.13-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # csh is used by WRF install scripts diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb index 876887783b..f8d471504c 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5-ictce-5.3.0-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # csh is used by WRF install scripts diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb index e57fe620a0..3a08ca8ce7 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.4.10-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # csh is used by WRF install scripts diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb index 3b2b8ef24d..aca6ed1e40 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # csh is used by WRF install scripts diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb index 0de8d2cb85..9f5c44886e 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-4.1.13-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # csh is used by WRF install scripts diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb index 404c7d4b08..f408dd6f1e 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-ictce-5.3.0-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # csh is used by WRF install scripts diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb index 011841b2c3..e55129bc1c 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2014b-dmpar.eb @@ -11,8 +11,8 @@ toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] source_urls = [ - http://www2.mmm.ucar.edu/wrf/src/, - http://www.mmm.ucar.edu/wrf/src/, + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', ] # csh is used by WRF install scripts -- GitLab From 6eec7a04a2704746cf0ef93a4cd5622481202d82 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 17 Dec 2014 14:22:38 +0100 Subject: [PATCH 0256/1217] remove unused patch file --- easybuild/easyconfigs/g/GATE/GATE-6.2_unistd.patch | 10 ---------- 1 file changed, 10 deletions(-) delete mode 100644 easybuild/easyconfigs/g/GATE/GATE-6.2_unistd.patch diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2_unistd.patch b/easybuild/easyconfigs/g/GATE/GATE-6.2_unistd.patch deleted file mode 100644 index 7ebf1af3e5..0000000000 --- a/easybuild/easyconfigs/g/GATE/GATE-6.2_unistd.patch +++ /dev/null @@ -1,10 +0,0 @@ ---- gate_v6.2/cluster_tools/jobsplitter/include/GateMacfileParser.hh.orig 2014-12-02 11:50:23.586463425 +0100 -+++ gate_v6.2/cluster_tools/jobsplitter/include/GateMacfileParser.hh 2014-12-02 11:51:45.498508680 +0100 -@@ -19,6 +19,7 @@ - #include - #include - #include -+#include - - using namespace std; - -- GitLab From bfbcb591cce36180c651bffcb6de188f011fc1ca Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 17 Dec 2014 14:50:33 +0100 Subject: [PATCH 0257/1217] use correct patch file in GATE 6.2 goolf easyconfig --- easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb index 0def719593..f0862bba48 100644 --- a/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb @@ -13,7 +13,7 @@ source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration patches = [ 'GATE-%(version)s_Makefile-prefix.patch', - 'GATE-v%(version)s_GCC-4.7.patch', + 'GATE-%(version)s_GCC-4.7.patch', ] dependencies = [ -- GitLab From 7bcb5ac31cf03ffd1559e4f91a163ec59e7c0109 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Wed, 17 Dec 2014 15:31:27 +0100 Subject: [PATCH 0258/1217] Autoconf dep removed --- easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb index e3c5f86d83..ae2c3c32ff 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb @@ -24,7 +24,6 @@ sources = ['ocaml-%(version)s.tar.gz'] sourcedir = name.lower() + '-' + '.'.join(version.split('.')[0:-1]) source_urls = ['http://caml.inria.fr/pub/distrib/%s' % sourcedir] -builddependencies = [('Autoconf', '2.69')] dependencies = [('ncurses', '5.9')] prefix_opt = "-prefix " -- GitLab From b82159c67ed9a4964159c65785fdb576926971b8 Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Wed, 17 Dec 2014 09:38:21 -0500 Subject: [PATCH 0259/1217] reverting zlib bump --- easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb | 2 +- easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb index 74c52d795b..c3c1e8454e 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb @@ -25,7 +25,7 @@ patches = ['SAMtools-1.1_Makefile.patch'] dependencies = [ ('ncurses', '5.9'), - ('zlib', '1.2.8'), + ('zlib', '1.2.7'), ] parallel = 1 diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb index 7512878824..429fdeca0a 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb @@ -27,7 +27,7 @@ patches = ['SAMtools-1.1_Makefile.patch'] dependencies = [ ('ncurses', '5.9'), - ('zlib', '1.2.8'), + ('zlib', '1.2.7'), ] parallel = 1 -- GitLab From 6c47745c8c73a3c9cc396930300e14b62725ddb1 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Sun, 26 Oct 2014 01:12:07 +0200 Subject: [PATCH 0260/1217] prepare for Lmod/5.8 --- .../easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb | 25 +++++++++++ easybuild/easyconfigs/l/Lmod/README.TXT | 35 --------------- easybuild/easyconfigs/l/Lmod/README.rst | 45 +++++++++++++++++++ easybuild/easyconfigs/l/Lmod/sourceme | 4 +- 4 files changed, 72 insertions(+), 37 deletions(-) create mode 100644 easybuild/easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb delete mode 100644 easybuild/easyconfigs/l/Lmod/README.TXT create mode 100644 easybuild/easyconfigs/l/Lmod/README.rst diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb new file mode 100644 index 0000000000..95a5ccbf3e --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb @@ -0,0 +1,25 @@ +name = "Lmod" +version = "5.8" + +homepage = "http://sourceforge.net/projects/lmod/" +description = """Lmod is a Lua based module system. Modules allow for dynamic modification + of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod + for a complete description. Lmod is a new implementation that easily handles the MODULEPATH + Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCE_TAR_BZ2] +source_urls = [ + 'http://sourceforge.net/projects/lmod/files/', + 'http://sourceforge.net/projects/lmod/files/Testing' +] + +dependencies = [("Lua", "5.1.4-8")] + +sanity_check_paths = { + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], + 'dirs': [] +} + +moduleclass = "tools" diff --git a/easybuild/easyconfigs/l/Lmod/README.TXT b/easybuild/easyconfigs/l/Lmod/README.TXT deleted file mode 100644 index 8922b05a78..0000000000 --- a/easybuild/easyconfigs/l/Lmod/README.TXT +++ /dev/null @@ -1,35 +0,0 @@ - -Summary: - -This directory contains (hopefully) sufficient gear in order to let you -bootstrap towards the Lmod implementation of environment modules. - -Howto: - -Assuming you have successfully used the bootstrap procedure of EasyBuild, -you should be able to initiate a recursive build of the following bits: - - `time eb Lmod-5.7-GCC-4.8.2.eb -r` - -l/Lmod/Lmod-5.7-GCC-4.8.2.eb ### so, you just aim for this one, with "-r" -l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb -n/ncurses/ncurses-5.9-GCC-4.8.2.eb -g/GCC/GCC-4.8.2.eb - -This set is expected to be the needed substrate to launch you towards Lmod, -which gets activated with the `sourceme` script sitting in the same directory: - -`source sourceme` # N.B. it does direct assignments on environment variables; that's intentional - -Then try: - -`ml av` # ie. the Lmod equivalent to `module avail` ; it should work - -If so, now you implemented the better instance of: https://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-17.html -Lmod's caching can help to work with *buildsets*; ref. https://fosdem.org/2014/schedule/event/hpc_devroom_hpcbios/ -You should now be able to try alternative Lmod/Lua versions, toggle cache, and so forth. - -enjoy, -Fotis - -2014-07-15 diff --git a/easybuild/easyconfigs/l/Lmod/README.rst b/easybuild/easyconfigs/l/Lmod/README.rst new file mode 100644 index 0000000000..f26f58a20d --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/README.rst @@ -0,0 +1,45 @@ +Summary +======= + +This directory contains (hopefully) sufficient gear in order to let you +bootstrap towards the Lmod implementation of environment modules. + +Howto +===== + +Assuming you have successfully used the bootstrap procedure of EasyBuild, +you should be able to initiate a recursive build of the following bits:: + + time eb Lmod-5.8-GCC-4.8.2.eb -r + +which is going to build the following modules/easyconfigs:: + + l/Lmod/Lmod-5.8-GCC-4.8.2.eb ### so, you just aim for this one, with "-r" + l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb + n/ncurses/ncurses-5.9-GCC-4.8.2.eb + g/GCC/GCC-4.8.2.eb + +If you are trying this under macosx, take care of the following aspects, as well: + +- export EASYBUILD_OPTARCH='' +- time eb GCC-4.8.2.eb --try-amend=parallel=1 +- time eb Lmod-5.8-GCC-4.8.2.eb -r ## ncurses should automatically kick a special patch + +This operation is expected to be the needed substrate to launch you towards Lmod, +which gets activated with the `sourceme` script sitting in the same directory:: + + source sourceme ## N.B. it does direct assignments on environment variables; that's intentional + +Then try:: + + ml av ## ie. the Lmod equivalent to `module avail` ; it should just work + +If so, now you implemented the better instance of: https://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-17.html +Lmod's caching can help to work with *buildsets*; ref. https://fosdem.org/2014/schedule/event/hpc_devroom_hpcbios/ +You should now be able to try alternative Lmod/Lua versions, toggle cache, and so forth. + +enjoy, +Fotis + +2014-10-26 + diff --git a/easybuild/easyconfigs/l/Lmod/sourceme b/easybuild/easyconfigs/l/Lmod/sourceme index f347d3eb52..6462b395ba 100644 --- a/easybuild/easyconfigs/l/Lmod/sourceme +++ b/easybuild/easyconfigs/l/Lmod/sourceme @@ -2,7 +2,7 @@ # # This script helps to implement policy: https://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-17.html # -# prereq: Lmod/5.7-GCC-4.8.2 +# prereq: Lmod/5.8-GCC-4.8.2 # prereq: Lua/5.1.4-8-GCC-4.8.2 # # build prereqs, take a note: GCC/4.8.2 & ncurses/5.9 @@ -12,7 +12,7 @@ EASYBUILD_PREFIX=${EASYBUILD_PREFIX:-"$HOME/.local/easybuild"} TOOLCHAIN="GCC-4.8.2" VERSIONLUA="5.1.4-8" -VERSIONLMOD="5.7" +VERSIONLMOD="5.8" PREFIXLUA=$EASYBUILD_PREFIX/software/Lua/$VERSIONLUA-$TOOLCHAIN PREFIXLMOD=$EASYBUILD_PREFIX/software/Lmod/$VERSIONLMOD-$TOOLCHAIN/lmod/$VERSIONLMOD -- GitLab From a9d6f422e24378baec657e5df0cecde504b3b30f Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Sun, 26 Oct 2014 16:41:22 +0100 Subject: [PATCH 0261/1217] improve readme.rst Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/l/Lmod/README.rst | 29 ++++++++++--------------- 1 file changed, 12 insertions(+), 17 deletions(-) diff --git a/easybuild/easyconfigs/l/Lmod/README.rst b/easybuild/easyconfigs/l/Lmod/README.rst index f26f58a20d..48753e0ac6 100644 --- a/easybuild/easyconfigs/l/Lmod/README.rst +++ b/easybuild/easyconfigs/l/Lmod/README.rst @@ -10,33 +10,28 @@ Howto Assuming you have successfully used the bootstrap procedure of EasyBuild, you should be able to initiate a recursive build of the following bits:: - time eb Lmod-5.8-GCC-4.8.2.eb -r + EASYBUILD_OPTARCH= time eb Lmod-5.8-GCC-4.8.2.eb -r which is going to build the following modules/easyconfigs:: - l/Lmod/Lmod-5.8-GCC-4.8.2.eb ### so, you just aim for this one, with "-r" - l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb - n/ncurses/ncurses-5.9-GCC-4.8.2.eb - g/GCC/GCC-4.8.2.eb + g/GCC/GCC-4.8.2.eb ## if this breaks use: --try-amend=parallel=1 + n/ncurses/ncurses-5.9-GCC-4.8.2.eb ## On MacOSX, this should pick a special patch + l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb ## Lmod is written in Lua, which needs ncurses + l/Lmod/Lmod-5.8-GCC-4.8.2.eb ## Lmod should be built with -r, to build the above -If you are trying this under macosx, take care of the following aspects, as well: +This operation is expected to be the needed substrate to launch you towards Lmod; +Lmod facility gets activated with the `sourceme` script available next to this file:: -- export EASYBUILD_OPTARCH='' -- time eb GCC-4.8.2.eb --try-amend=parallel=1 -- time eb Lmod-5.8-GCC-4.8.2.eb -r ## ncurses should automatically kick a special patch - -This operation is expected to be the needed substrate to launch you towards Lmod, -which gets activated with the `sourceme` script sitting in the same directory:: - - source sourceme ## N.B. it does direct assignments on environment variables; that's intentional + source sourceme ## N.B. direct assignments on environment variables are intentional here Then try:: - ml av ## ie. the Lmod equivalent to `module avail` ; it should just work + ml av ## ie. the Lmod equivalent to `module avail` ; it should just work -If so, now you implemented the better instance of: https://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-17.html +If so, now you implemented the better instance of environment modules implementations: + https://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-17.html Lmod's caching can help to work with *buildsets*; ref. https://fosdem.org/2014/schedule/event/hpc_devroom_hpcbios/ -You should now be able to try alternative Lmod/Lua versions, toggle cache, and so forth. +You should now be able to try alternative Lmod/Lua versions, toggle the cache, and so forth. enjoy, Fotis -- GitLab From d1cae9cae39b789a2ec70752551d10681e89be02 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 17 Dec 2014 15:51:09 +0100 Subject: [PATCH 0262/1217] fix deprecated fallback to ConfigureMake easyblock in Lmod 5.8 easyconfig --- easybuild/easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb index 95a5ccbf3e..adb13e8e65 100644 --- a/easybuild/easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.8-GCC-4.8.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lmod" version = "5.8" -- GitLab From 333609ecb91e581302514ab16e9b2299d1632084 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 17 Dec 2014 16:13:05 +0100 Subject: [PATCH 0263/1217] add missing zlib 1.2.7 foss/2014b easyconfig --- .../z/zlib/zlib-1.2.7-foss-2014b.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.7-foss-2014b.eb diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-foss-2014b.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-foss-2014b.eb new file mode 100644 index 0000000000..3368016589 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-foss-2014b.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.7' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From c1581d04b3953c4f9ff14a43b611f4807b08769d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 17 Dec 2014 17:26:21 +0100 Subject: [PATCH 0264/1217] fix naming of GMAP-GSNAP easyconfigs that were named GMAP + descr style fix --- .../GMAP-GSNAP-2013-11-27-goolf-1.4.10.eb} | 7 ++++--- .../GMAP-GSNAP-2013-11-27-ictce-5.3.0.eb} | 7 ++++--- .../GMAP-GSNAP-2013-11-27-ictce-5.5.0.eb} | 7 ++++--- .../g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb | 5 ++--- .../g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb | 5 ++--- 5 files changed, 16 insertions(+), 15 deletions(-) rename easybuild/easyconfigs/g/{GMAP/GMAP-2013-11-27-goolf-1.4.10.eb => GMAP-GSNAP/GMAP-GSNAP-2013-11-27-goolf-1.4.10.eb} (68%) rename easybuild/easyconfigs/g/{GMAP/GMAP-2013-11-27-ictce-5.3.0.eb => GMAP-GSNAP/GMAP-GSNAP-2013-11-27-ictce-5.3.0.eb} (68%) rename easybuild/easyconfigs/g/{GMAP/GMAP-2013-11-27-ictce-5.5.0.eb => GMAP-GSNAP/GMAP-GSNAP-2013-11-27-ictce-5.5.0.eb} (68%) diff --git a/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-goolf-1.4.10.eb similarity index 68% rename from easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-goolf-1.4.10.eb rename to easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-goolf-1.4.10.eb index b43b269c3d..451fc7c456 100644 --- a/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-goolf-1.4.10.eb @@ -1,15 +1,16 @@ easyblock = 'ConfigureMake' -name = 'GMAP' +name = 'GMAP-GSNAP' version = '2013-11-27' homepage = 'http://research-pub.gene.com/gmap/' -description = "A Genomic Mapping and Alignment Program for mRNA and EST Sequences" +description = """GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences + GSNAP: Genomic Short-read Nucleotide Alignment Program""" toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['http://research-pub.gene.com/gmap/src/'] -sources = ['%(namelower)s-gsnap-%(version)s.tar.gz'] +sources = ['%(namelower)s-%(version)s.tar.gz'] dependencies = [ ('bzip2', '1.0.6'), diff --git a/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-ictce-5.3.0.eb similarity index 68% rename from easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-ictce-5.3.0.eb rename to easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-ictce-5.3.0.eb index bd210fa4da..eaca9cab2b 100644 --- a/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-ictce-5.3.0.eb @@ -1,15 +1,16 @@ easyblock = 'ConfigureMake' -name = 'GMAP' +name = 'GMAP-GSNAP' version = '2013-11-27' homepage = 'http://research-pub.gene.com/gmap/' -description = "A Genomic Mapping and Alignment Program for mRNA and EST Sequences" +description = """GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences + GSNAP: Genomic Short-read Nucleotide Alignment Program""" toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ['http://research-pub.gene.com/gmap/src/'] -sources = ['%(namelower)s-gsnap-%(version)s.tar.gz'] +sources = ['%(namelower)s-%(version)s.tar.gz'] dependencies = [ ('bzip2', '1.0.6'), diff --git a/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-ictce-5.5.0.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-ictce-5.5.0.eb similarity index 68% rename from easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-ictce-5.5.0.eb rename to easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-ictce-5.5.0.eb index 4f8e4ce300..fb499f088b 100644 --- a/easybuild/easyconfigs/g/GMAP/GMAP-2013-11-27-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2013-11-27-ictce-5.5.0.eb @@ -1,15 +1,16 @@ easyblock = 'ConfigureMake' -name = 'GMAP' +name = 'GMAP-GSNAP' version = '2013-11-27' homepage = 'http://research-pub.gene.com/gmap/' -description = "A Genomic Mapping and Alignment Program for mRNA and EST Sequences" +description = """GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences + GSNAP: Genomic Short-read Nucleotide Alignment Program""" toolchain = {'name': 'ictce', 'version': '5.5.0'} source_urls = ['http://research-pub.gene.com/gmap/src/'] -sources = ['%(namelower)s-gsnap-%(version)s.tar.gz'] +sources = ['%(namelower)s-%(version)s.tar.gz'] dependencies = [ ('bzip2', '1.0.6'), diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb index d455c7c728..3ce82b5b2d 100644 --- a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb @@ -9,9 +9,8 @@ name = 'GMAP-GSNAP' version = '2014-01-21' homepage = 'http://research-pub.gene.com/gmap/' -description = ''' - GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences - GSNAP: Genomic Short-read Nucleotide Alignment Program ''' +description = """GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences + GSNAP: Genomic Short-read Nucleotide Alignment Program""" toolchain = {'name': 'goolf', 'version': '1.4.10'} diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb index dd92913268..746e7c4f53 100644 --- a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb @@ -9,9 +9,8 @@ name = 'GMAP-GSNAP' version = "2014-06-10" homepage = 'http://research-pub.gene.com/gmap/' -description = ''' - GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences - GSNAP: Genomic Short-read Nucleotide Alignment Program ''' +description = """GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences + GSNAP: Genomic Short-read Nucleotide Alignment Program""" toolchain = {'name': 'goolf', 'version': '1.4.10'} -- GitLab From 9ceb44f85bbff02da35f35b5769e759b6f5e09db Mon Sep 17 00:00:00 2001 From: pescobar Date: Wed, 17 Dec 2014 17:48:12 +0100 Subject: [PATCH 0265/1217] latest picard easyconfig --- easybuild/easyconfigs/p/picard/picard-1.119.eb | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 easybuild/easyconfigs/p/picard/picard-1.119.eb diff --git a/easybuild/easyconfigs/p/picard/picard-1.119.eb b/easybuild/easyconfigs/p/picard/picard-1.119.eb new file mode 100644 index 0000000000..cb362554cd --- /dev/null +++ b/easybuild/easyconfigs/p/picard/picard-1.119.eb @@ -0,0 +1,14 @@ +name = 'picard' +version = '1.119' + +homepage = 'http://sourceforge.net/projects/picard' +description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%(name)s-tools-%(version)s.zip'] + +dependencies = [('Java', '1.7.0_10')] + +moduleclass = 'bio' -- GitLab From 1f37186566610bdb625e7f96bd301a709502615c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 17 Dec 2014 21:15:26 +0100 Subject: [PATCH 0266/1217] fix filename of CUDA easyconfig with versionsuffix --- .../{CUDA-5.0.35-1-GCC-4.6.4.eb => CUDA-5.0.35-GCC-4.6.4-1.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/c/CUDA/{CUDA-5.0.35-1-GCC-4.6.4.eb => CUDA-5.0.35-GCC-4.6.4-1.eb} (100%) diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1-GCC-4.6.4.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-GCC-4.6.4-1.eb similarity index 100% rename from easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1-GCC-4.6.4.eb rename to easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-GCC-4.6.4-1.eb -- GitLab From 4eeec539ff9c587afe1d21440f5f8c4975c7499b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 17 Dec 2014 22:42:45 +0100 Subject: [PATCH 0267/1217] fix easyconfig filenames, enhance unit test to check easyconfig filenames --- ...-2.0-beta-linux64.eb => BayesTraits-2.0-Beta-Linux64.eb} | 0 .../b/bc/{bc-1.06-GCC-4.8.2.eb => bc-1.06.95-GCC-4.8.2.eb} | 0 ...5.20.0.eb => DBD-mysql-4.028-intel-2014b-Perl-5.20.0.eb} | 0 ...5.3.0-R-2.15.3.eb => fmri-1.5-0-ictce-5.3.0-R-2.15.3.eb} | 0 ...M-library-20130406-045632_pre-release-3_Linux-x86_64.eb} | 0 ...erl-5.20.0.eb => GSSAPI-0.28-intel-2014b-Perl-5.20.0.eb} | 0 ...n-2.7.8.eb => libXext-1.3.2-intel-2014b-Python-2.7.8.eb} | 0 ...goolf-1.4.10.eb => libcircle-0.2.0-rc.1-goolf-1.4.10.eb} | 0 ...1-ictce-5.3.0.eb => libcircle-0.2.0-rc.1-ictce-5.3.0.eb} | 0 ...-2.7.5.eb => Modeller-9.13-goolf-1.4.10-Python-2.7.5.eb} | 0 ...-5.4.0_Linux_x86_64.eb => Molekel-5.4.0-Linux_x86_64.eb} | 0 ....0.2-bare.eb => ncdf4-1.6.1-ictce-5.3.0-R-3.0.2-bare.eb} | 0 ...-5.3.0-R-3.0.2.eb => ncdf4-1.6.1-ictce-5.3.0-R-3.0.2.eb} | 0 ...ango-1.36-intel-2014b.eb => Pango-1.36.7-intel-2014b.eb} | 0 ...-goolf-1.4.10.eb => PhyML-20131016-goolf-1.4.10devel.eb} | 0 ...3.234-ictce-4.1.13.eb => packmol-13.243-ictce-4.1.13.eb} | 0 ...-goolf-1.4.10.eb => SURF-1.0-goolf-1.4.10-LINUXAMD64.eb} | 0 ....3.eb => scikit-learn-0.14-ictce-4.1.13-Python-2.7.5.eb} | 0 ...goolf-1.4.10.eb => sickle-1.210-goolf-1.4.10-bab15f7.eb} | 0 test/easyconfigs/easyconfigs.py | 6 ++++++ 20 files changed, 6 insertions(+) rename easybuild/easyconfigs/b/BayesTraits/{BayesTraits-2.0-beta-linux64.eb => BayesTraits-2.0-Beta-Linux64.eb} (100%) rename easybuild/easyconfigs/b/bc/{bc-1.06-GCC-4.8.2.eb => bc-1.06.95-GCC-4.8.2.eb} (100%) rename easybuild/easyconfigs/d/DBD-mysql/{DBD-mysql-intel-2014b-Perl-5.20.0.eb => DBD-mysql-4.028-intel-2014b-Perl-5.20.0.eb} (100%) rename easybuild/easyconfigs/f/fmri/{fmri-1.5.0-ictce-5.3.0-R-2.15.3.eb => fmri-1.5-0-ictce-5.3.0-R-2.15.3.eb} (100%) rename easybuild/easyconfigs/g/GEM-library/{GEM-library_20130406-045632_pre-release-3_Linux-x86_64.eb => GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb} (100%) rename easybuild/easyconfigs/g/GSSAPI/{GSSAPI-0.27-intel-2014b-Perl-5.20.0.eb => GSSAPI-0.28-intel-2014b-Perl-5.20.0.eb} (100%) rename easybuild/easyconfigs/l/libXext/{libXext-1.3.2-intel-2014-Python-2.7.8.eb => libXext-1.3.2-intel-2014b-Python-2.7.8.eb} (100%) rename easybuild/easyconfigs/l/libcircle/{libcircle-0.20-rc.1-goolf-1.4.10.eb => libcircle-0.2.0-rc.1-goolf-1.4.10.eb} (100%) rename easybuild/easyconfigs/l/libcircle/{libcircle-0.20-rc.1-ictce-5.3.0.eb => libcircle-0.2.0-rc.1-ictce-5.3.0.eb} (100%) rename easybuild/easyconfigs/m/Modeller/{Modeller-9.13-Python-2.7.5.eb => Modeller-9.13-goolf-1.4.10-Python-2.7.5.eb} (100%) rename easybuild/easyconfigs/m/Molekel/{Molekel-5.4.0_Linux_x86_64.eb => Molekel-5.4.0-Linux_x86_64.eb} (100%) rename easybuild/easyconfigs/n/ncdf4/{ncdf4-1.6.5-ictce-5.3.0-R-3.0.2-bare.eb => ncdf4-1.6.1-ictce-5.3.0-R-3.0.2-bare.eb} (100%) rename easybuild/easyconfigs/n/ncdf4/{ncdf4-1.6.5-ictce-5.3.0-R-3.0.2.eb => ncdf4-1.6.1-ictce-5.3.0-R-3.0.2.eb} (100%) rename easybuild/easyconfigs/p/Pango/{Pango-1.36-intel-2014b.eb => Pango-1.36.7-intel-2014b.eb} (100%) rename easybuild/easyconfigs/p/PhyML/{PhyML-20131016-devel-goolf-1.4.10.eb => PhyML-20131016-goolf-1.4.10devel.eb} (100%) rename easybuild/easyconfigs/p/packmol/{packmol-13.234-ictce-4.1.13.eb => packmol-13.243-ictce-4.1.13.eb} (100%) rename easybuild/easyconfigs/s/SURF/{SURF-1.0-goolf-1.4.10.eb => SURF-1.0-goolf-1.4.10-LINUXAMD64.eb} (100%) rename easybuild/easyconfigs/s/scikit-learn/{scikit-learn-0.14-ictce-4.1.13-Python-2.7.3.eb => scikit-learn-0.14-ictce-4.1.13-Python-2.7.5.eb} (100%) rename easybuild/easyconfigs/s/sickle/{sickle-1.210-goolf-1.4.10.eb => sickle-1.210-goolf-1.4.10-bab15f7.eb} (100%) diff --git a/easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-beta-linux64.eb b/easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-Beta-Linux64.eb similarity index 100% rename from easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-beta-linux64.eb rename to easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-Beta-Linux64.eb diff --git a/easybuild/easyconfigs/b/bc/bc-1.06-GCC-4.8.2.eb b/easybuild/easyconfigs/b/bc/bc-1.06.95-GCC-4.8.2.eb similarity index 100% rename from easybuild/easyconfigs/b/bc/bc-1.06-GCC-4.8.2.eb rename to easybuild/easyconfigs/b/bc/bc-1.06.95-GCC-4.8.2.eb diff --git a/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-4.028-intel-2014b-Perl-5.20.0.eb similarity index 100% rename from easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-intel-2014b-Perl-5.20.0.eb rename to easybuild/easyconfigs/d/DBD-mysql/DBD-mysql-4.028-intel-2014b-Perl-5.20.0.eb diff --git a/easybuild/easyconfigs/f/fmri/fmri-1.5.0-ictce-5.3.0-R-2.15.3.eb b/easybuild/easyconfigs/f/fmri/fmri-1.5-0-ictce-5.3.0-R-2.15.3.eb similarity index 100% rename from easybuild/easyconfigs/f/fmri/fmri-1.5.0-ictce-5.3.0-R-2.15.3.eb rename to easybuild/easyconfigs/f/fmri/fmri-1.5-0-ictce-5.3.0-R-2.15.3.eb diff --git a/easybuild/easyconfigs/g/GEM-library/GEM-library_20130406-045632_pre-release-3_Linux-x86_64.eb b/easybuild/easyconfigs/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb similarity index 100% rename from easybuild/easyconfigs/g/GEM-library/GEM-library_20130406-045632_pre-release-3_Linux-x86_64.eb rename to easybuild/easyconfigs/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb diff --git a/easybuild/easyconfigs/g/GSSAPI/GSSAPI-0.27-intel-2014b-Perl-5.20.0.eb b/easybuild/easyconfigs/g/GSSAPI/GSSAPI-0.28-intel-2014b-Perl-5.20.0.eb similarity index 100% rename from easybuild/easyconfigs/g/GSSAPI/GSSAPI-0.27-intel-2014b-Perl-5.20.0.eb rename to easybuild/easyconfigs/g/GSSAPI/GSSAPI-0.28-intel-2014b-Perl-5.20.0.eb diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014-Python-2.7.8.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b-Python-2.7.8.eb similarity index 100% rename from easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014-Python-2.7.8.eb rename to easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b-Python-2.7.8.eb diff --git a/easybuild/easyconfigs/l/libcircle/libcircle-0.20-rc.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-goolf-1.4.10.eb similarity index 100% rename from easybuild/easyconfigs/l/libcircle/libcircle-0.20-rc.1-goolf-1.4.10.eb rename to easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-goolf-1.4.10.eb diff --git a/easybuild/easyconfigs/l/libcircle/libcircle-0.20-rc.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-ictce-5.3.0.eb similarity index 100% rename from easybuild/easyconfigs/l/libcircle/libcircle-0.20-rc.1-ictce-5.3.0.eb rename to easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-ictce-5.3.0.eb diff --git a/easybuild/easyconfigs/m/Modeller/Modeller-9.13-Python-2.7.5.eb b/easybuild/easyconfigs/m/Modeller/Modeller-9.13-goolf-1.4.10-Python-2.7.5.eb similarity index 100% rename from easybuild/easyconfigs/m/Modeller/Modeller-9.13-Python-2.7.5.eb rename to easybuild/easyconfigs/m/Modeller/Modeller-9.13-goolf-1.4.10-Python-2.7.5.eb diff --git a/easybuild/easyconfigs/m/Molekel/Molekel-5.4.0_Linux_x86_64.eb b/easybuild/easyconfigs/m/Molekel/Molekel-5.4.0-Linux_x86_64.eb similarity index 100% rename from easybuild/easyconfigs/m/Molekel/Molekel-5.4.0_Linux_x86_64.eb rename to easybuild/easyconfigs/m/Molekel/Molekel-5.4.0-Linux_x86_64.eb diff --git a/easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.5-ictce-5.3.0-R-3.0.2-bare.eb b/easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.1-ictce-5.3.0-R-3.0.2-bare.eb similarity index 100% rename from easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.5-ictce-5.3.0-R-3.0.2-bare.eb rename to easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.1-ictce-5.3.0-R-3.0.2-bare.eb diff --git a/easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.5-ictce-5.3.0-R-3.0.2.eb b/easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.1-ictce-5.3.0-R-3.0.2.eb similarity index 100% rename from easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.5-ictce-5.3.0-R-3.0.2.eb rename to easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.1-ictce-5.3.0-R-3.0.2.eb diff --git a/easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb b/easybuild/easyconfigs/p/Pango/Pango-1.36.7-intel-2014b.eb similarity index 100% rename from easybuild/easyconfigs/p/Pango/Pango-1.36-intel-2014b.eb rename to easybuild/easyconfigs/p/Pango/Pango-1.36.7-intel-2014b.eb diff --git a/easybuild/easyconfigs/p/PhyML/PhyML-20131016-devel-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PhyML/PhyML-20131016-goolf-1.4.10devel.eb similarity index 100% rename from easybuild/easyconfigs/p/PhyML/PhyML-20131016-devel-goolf-1.4.10.eb rename to easybuild/easyconfigs/p/PhyML/PhyML-20131016-goolf-1.4.10devel.eb diff --git a/easybuild/easyconfigs/p/packmol/packmol-13.234-ictce-4.1.13.eb b/easybuild/easyconfigs/p/packmol/packmol-13.243-ictce-4.1.13.eb similarity index 100% rename from easybuild/easyconfigs/p/packmol/packmol-13.234-ictce-4.1.13.eb rename to easybuild/easyconfigs/p/packmol/packmol-13.243-ictce-4.1.13.eb diff --git a/easybuild/easyconfigs/s/SURF/SURF-1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SURF/SURF-1.0-goolf-1.4.10-LINUXAMD64.eb similarity index 100% rename from easybuild/easyconfigs/s/SURF/SURF-1.0-goolf-1.4.10.eb rename to easybuild/easyconfigs/s/SURF/SURF-1.0-goolf-1.4.10-LINUXAMD64.eb diff --git a/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.14-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.14-ictce-4.1.13-Python-2.7.5.eb similarity index 100% rename from easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.14-ictce-4.1.13-Python-2.7.3.eb rename to easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.14-ictce-4.1.13-Python-2.7.5.eb diff --git a/easybuild/easyconfigs/s/sickle/sickle-1.210-goolf-1.4.10.eb b/easybuild/easyconfigs/s/sickle/sickle-1.210-goolf-1.4.10-bab15f7.eb similarity index 100% rename from easybuild/easyconfigs/s/sickle/sickle-1.210-goolf-1.4.10.eb rename to easybuild/easyconfigs/s/sickle/sickle-1.210-goolf-1.4.10-bab15f7.eb diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index 4b9aff3b0e..d339976033 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -48,6 +48,7 @@ from easybuild.framework.easyconfig.easyconfig import get_easyblock_class from easybuild.framework.easyconfig.tools import dep_graph, get_paths_for, process_easyconfig from easybuild.tools import config from easybuild.tools.module_naming_scheme import GENERAL_CLASS +from easybuild.tools.module_naming_scheme.utilities import det_full_ec_version from easybuild.tools.robot import resolve_dependencies @@ -215,6 +216,11 @@ def template_easyconfig_test(self, spec): else: self.assertTrue(False, "easyconfig %s does not contain blocks, yields only one parsed easyconfig" % spec) + # check easyconfig file name + expected_fn = '%s-%s.eb' % (ec['name'], det_full_ec_version(ec)) + msg = "Filename '%s' of parsed easconfig matches expected filename '%s'" % (spec, expected_fn) + self.assertEqual(os.path.basename(spec), expected_fn, msg) + # sanity check for software name name = fetch_parameter_from_easyconfig_file(spec, 'name') self.assertTrue(ec['name'], name) -- GitLab From c2a700e5233018acf847e37f8045680d74ea4283 Mon Sep 17 00:00:00 2001 From: Bart Verleye Date: Thu, 18 Dec 2014 11:22:18 +1300 Subject: [PATCH 0268/1217] adding suitesparse eb file for goolf 1.5.14 --- ...eSparse-4.2.1-goolf-1.5.14-ParMETIS-4.0.3.eb | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.2.1-goolf-1.5.14-ParMETIS-4.0.3.eb diff --git a/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.2.1-goolf-1.5.14-ParMETIS-4.0.3.eb b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.2.1-goolf-1.5.14-ParMETIS-4.0.3.eb new file mode 100644 index 0000000000..0a08f2a7fe --- /dev/null +++ b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.2.1-goolf-1.5.14-ParMETIS-4.0.3.eb @@ -0,0 +1,17 @@ +name = 'SuiteSparse' +version = '4.2.1' + +homepage = 'http://www.cise.ufl.edu/research/sparse/SuiteSparse/' +description = """SuiteSparse is a collection of libraries manipulate sparse matrices.""" +toolchain = {'name': 'goolf', 'version': '1.5.14'} # tweaked by EasyBuild (was: {'name': 'goolf', 'version': '1.4.10'}) +toolchainopts = {'opt': True, 'unroll': True, 'pic': True, 'static': True} + +source_urls = ['http://www.cise.ufl.edu/research/sparse/SuiteSparse/'] +sources = [SOURCE_TAR_GZ] + +parmetis = 'ParMETIS' +parmetis_ver = '4.0.3' +versionsuffix = '-%s-%s' % (parmetis, parmetis_ver) +dependencies = [(parmetis, parmetis_ver)] + +moduleclass = 'numlib' -- GitLab From 46b0e5c3042d0a89e1bcc2428a46b36ef6c1b6aa Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 18 Dec 2014 08:51:18 +0100 Subject: [PATCH 0269/1217] bump version to 1.16.0.0 and update release notes --- RELEASE_NOTES | 46 ++++++++++++++++++++++++++++++++++++++++++++-- setup.py | 2 +- 2 files changed, 45 insertions(+), 3 deletions(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index a1d28661cd..ecad092752 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -1,8 +1,50 @@ This file contains a description of the major changes to the easybuild-easyconfigs EasyBuild package. For more detailed information, please see the git log. -The latest version of easybuild-easyconfig provides 2,809 easyconfig files, for 511 different software packages -and 34 different (compiler) toolchains. +These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html. + +The latest version of easybuild-easyconfig provides 3,066 easyconfig files, for 551 different software packages +and 32 different (compiler) toolchains. + +v1.16.0.0 (December 18th 2014) +------------------------------ + +feature + bugfix release +- added example easyconfig files for 39 new software packages: + ANTs (#1232), BEOPS (#1264), Chhimera (#1255), ctffind (#1249), DBD-SQLite (#1064), DBD-mysql (#1063), + DIALIGN-TX (#668), ffmpeg (#1088), GObject-Introspection (#1079), GTS (#1079), Graphviz (#1079), GraphViz2 (#1079), + grace (#1131), HarfBuzz (#1079), HTSlib (#1161), GSSAPI (#1048), Kerberos_V5 (#1048), libevent (#1063), + libXdmcp (#1129), libXft (#1017), libXinerama (#1017), libXrender (#1017), Maven (#1094), MySQL (#1063), + Net-LibIDN (#1060), OpenCV (#1088), OpenMD (#1105), Qhull (#1105), Pango (#1079), psmpi (#1245, #1246), + RELION (#1017), renderproto (#1017), rjags (#1125), runjags (#1125), SPRNG (#1138, #1141), xineramaproto (#1017), + XML-Dumper (#1061), XML-Parser (#1061), XML-Twig (#1061) +- added easyconfigs for new toolchains + intel/2014.10 & intel/2014.11 (#1219), intel-para/2014.12 (#1246), gpsolf/2014.12 (#1245), iompi/6.6.4 (#1215) +- include easyblock = 'ConfigureMake' in relevant easyconfigs to deal with deprecation of automagic fallback to ConfigureMake (#1248) + - see also easybuild-framework#1113 and Automagic fallback to ConfigureMake +- clean up use of deprecated functionality in existing easyconfigs (#1252, #1259) + - stop using deprecated makeopts, premakeopts and shared_lib_ext + - check for use of deprecated functionality in easyconfigs unit tests + - see also http://easybuild.readthedocs.org/en/latest/Deprecated-functionality.html#easyconfig-parameters +- various other enhancements, including: + - also build fftw3_threads libraries, and enhance sanity checks (#1013) + - add unit test to verify specified sanity_check_paths (#1119) + - update and clean up README, refer to http://easybuild.readthedocs.org documentation (#1184, #1224) +- various bug fixes, including: + - fix unit tests w.r.t. changes in framework (#1146) + - remove unnecessary build dependencies for OpenMPI (#1168) + - remove duplicate line in OpenMPI easyconfigs (#1207) + - fix affiliation/mail address for Fotis in headers (#1237) + - fix permissions of easyconfig files for consistency (#1210) + - disable symbol lookup feature in cairo to fix build on SL6 (#1241) + - fix easyconfig gmpolf toolchain w.r.t. MPICH software name (#1217) + - see also easybuild-framework#1112 + - fix source_urls for WRF and WPS (#1225) + - fix and clean up GATE easyconfigs (#1228) + - fix broken CLHEP builds by including -gcc in $CXXFLAGS (#1254) + - add patch to fix broken test in Go (#1257) + - fix name of GMAP easyconfigs, should be GMAP-GSNAP (#1268) + - fix easyconfig filenames, enhance unit test to check easyconfig filenames (#1271) v1.15.2.0 (October 7th 2014) ---------------------------- diff --git a/setup.py b/setup.py index dbe78d3aa3..dcf405901d 100644 --- a/setup.py +++ b/setup.py @@ -41,7 +41,7 @@ from distutils import log # note: release candidates should be versioned as a pre-release, e.g. "1.1rc1" # 1.1-rc1 would indicate a post-release, i.e., and update of 1.1, so beware! -VERSION = "1.16.0.0dev" +VERSION = "1.16.0.0" API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From cdf289ecbdf2ff8d23e4d9673e1e329e40d007c6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 18 Dec 2014 09:28:14 +0100 Subject: [PATCH 0270/1217] bump version to 1.16.1.0dev --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index dcf405901d..2a6a3c3331 100644 --- a/setup.py +++ b/setup.py @@ -41,7 +41,7 @@ from distutils import log # note: release candidates should be versioned as a pre-release, e.g. "1.1rc1" # 1.1-rc1 would indicate a post-release, i.e., and update of 1.1, so beware! -VERSION = "1.16.0.0" +VERSION = "1.16.1.0dev" API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From 969c1fa9e430494ca0a689e305c02aff0b01aaba Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 18 Dec 2014 09:29:22 +0100 Subject: [PATCH 0271/1217] bump version to 2.0.0dev --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 2a6a3c3331..ca2b23a34b 100644 --- a/setup.py +++ b/setup.py @@ -41,7 +41,7 @@ from distutils import log # note: release candidates should be versioned as a pre-release, e.g. "1.1rc1" # 1.1-rc1 would indicate a post-release, i.e., and update of 1.1, so beware! -VERSION = "1.16.1.0dev" +VERSION = "2.0.0dev" API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From 673cc408037e2f740a1b1d59833217e8ea30f37c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 18 Dec 2014 11:35:37 +0100 Subject: [PATCH 0272/1217] fix version to v1.16.0.0 --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index ca2b23a34b..dcf405901d 100644 --- a/setup.py +++ b/setup.py @@ -41,7 +41,7 @@ from distutils import log # note: release candidates should be versioned as a pre-release, e.g. "1.1rc1" # 1.1-rc1 would indicate a post-release, i.e., and update of 1.1, so beware! -VERSION = "2.0.0dev" +VERSION = "1.16.0.0" API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From bcaebbfe66ec636b95ba5671d1c3866892287f3e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 18 Dec 2014 11:42:03 +0100 Subject: [PATCH 0273/1217] add easyconfig file to CMake v3.1.0 with intel/2014b --- .../c/CMake/CMake-3.1.0-intel-2014b.eb | 22 +++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.1.0-intel-2014b.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.1.0-intel-2014b.eb b/easybuild/easyconfigs/c/CMake/CMake-3.1.0-intel-2014b.eb new file mode 100644 index 0000000000..40eb55b4f3 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.1.0-intel-2014b.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.1.0' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From 57b09efeb59a19b826111b1b7a5c36fd4a81995b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 18 Dec 2014 11:51:59 +0100 Subject: [PATCH 0274/1217] add easyconfig file for EasyBuild v1.16.0 --- .../e/EasyBuild/EasyBuild-1.16.0.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb new file mode 100644 index 0000000000..248cce692e --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb @@ -0,0 +1,29 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = "1.16.0" + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.0.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' -- GitLab From 6f7ebab19c8a9a97544360a107e18af5e9532ee3 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 18 Dec 2014 12:16:33 +0100 Subject: [PATCH 0275/1217] bump version to 1.16.1.0dev --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index dcf405901d..2a6a3c3331 100644 --- a/setup.py +++ b/setup.py @@ -41,7 +41,7 @@ from distutils import log # note: release candidates should be versioned as a pre-release, e.g. "1.1rc1" # 1.1-rc1 would indicate a post-release, i.e., and update of 1.1, so beware! -VERSION = "1.16.0.0" +VERSION = "1.16.1.0dev" API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From e020198be42c9fdb95e16513c8a8f1c8be21bb1a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 18 Dec 2014 12:16:52 +0100 Subject: [PATCH 0276/1217] bump version to 2.0.0.0dev --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 2a6a3c3331..6fdb0b240f 100644 --- a/setup.py +++ b/setup.py @@ -41,7 +41,7 @@ from distutils import log # note: release candidates should be versioned as a pre-release, e.g. "1.1rc1" # 1.1-rc1 would indicate a post-release, i.e., and update of 1.1, so beware! -VERSION = "1.16.1.0dev" +VERSION = "2.0.0.0dev" API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From 75860b4c51c93d301268a87a078ec920e67a929f Mon Sep 17 00:00:00 2001 From: Bart Verleye Date: Fri, 19 Dec 2014 10:30:32 +1300 Subject: [PATCH 0277/1217] deleting file that does not belong here --- ...eSparse-4.2.1-goolf-1.5.14-ParMETIS-4.0.3.eb | 17 ----------------- 1 file changed, 17 deletions(-) delete mode 100644 easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.2.1-goolf-1.5.14-ParMETIS-4.0.3.eb diff --git a/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.2.1-goolf-1.5.14-ParMETIS-4.0.3.eb b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.2.1-goolf-1.5.14-ParMETIS-4.0.3.eb deleted file mode 100644 index 0a08f2a7fe..0000000000 --- a/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.2.1-goolf-1.5.14-ParMETIS-4.0.3.eb +++ /dev/null @@ -1,17 +0,0 @@ -name = 'SuiteSparse' -version = '4.2.1' - -homepage = 'http://www.cise.ufl.edu/research/sparse/SuiteSparse/' -description = """SuiteSparse is a collection of libraries manipulate sparse matrices.""" -toolchain = {'name': 'goolf', 'version': '1.5.14'} # tweaked by EasyBuild (was: {'name': 'goolf', 'version': '1.4.10'}) -toolchainopts = {'opt': True, 'unroll': True, 'pic': True, 'static': True} - -source_urls = ['http://www.cise.ufl.edu/research/sparse/SuiteSparse/'] -sources = [SOURCE_TAR_GZ] - -parmetis = 'ParMETIS' -parmetis_ver = '4.0.3' -versionsuffix = '-%s-%s' % (parmetis, parmetis_ver) -dependencies = [(parmetis, parmetis_ver)] - -moduleclass = 'numlib' -- GitLab From 6e17908a83f05b488b5e9404d56be46e2f894c1d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 19 Dec 2014 11:47:25 +0100 Subject: [PATCH 0278/1217] set default easyblock for ConfigureMake in TEMPLATE.eb --- easybuild/easyconfigs/TEMPLATE.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/TEMPLATE.eb b/easybuild/easyconfigs/TEMPLATE.eb index e772048a10..69759ec8da 100644 --- a/easybuild/easyconfigs/TEMPLATE.eb +++ b/easybuild/easyconfigs/TEMPLATE.eb @@ -1,6 +1,7 @@ # Note: # This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild # It was auto-generated based on a template easyconfig, so it should be used with care. +easyblock = 'ConfigureMake' name = 'NAME' version = 'VERSION' -- GitLab From 026d2b68583df39f89f498b9195b6f37d7aa9ea6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 19 Dec 2014 12:28:02 +0100 Subject: [PATCH 0279/1217] fix deprecated fallback to ConfigureMake easyblock in HPL easyconfig --- easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb index 97b6ceedd3..0499481e32 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'HPL' version = '2.1' -- GitLab From 7da3b15e3f8f70af877a6c3c6cc6ae92a9314306 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 19 Dec 2014 13:10:30 +0100 Subject: [PATCH 0280/1217] fix deprecated fallback to ConfigureMake easyblock in easyconfigs --- easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015a.eb | 2 ++ easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb | 2 ++ easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.9.2.eb | 2 ++ easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb | 2 ++ easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb | 2 ++ 5 files changed, 10 insertions(+) diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015a.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015a.eb index b6d23c7948..3967193a7c 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015a.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015a.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FFTW' version = '3.3.4' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb index 225cb3be6a..b069065183 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'HPL' version = '2.1' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.9.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.9.2.eb index ad5c55a64a..f86d5d11ab 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.9.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'hwloc' version = '1.10.0' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb index 86b6e12faa..a301fa3256 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'numactl' version = '2.0.10' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb index a4320661c9..05c5764ce4 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenMPI' version = "1.8.3" -- GitLab From 198f163eb73466136825cbe3dadd5419f0f43ec8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 19 Dec 2014 13:13:13 +0100 Subject: [PATCH 0281/1217] fix deprecated fallback to ConfigureMake easyblock in OpenBLAS easyconfig --- .../o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb index 182dbbd22f..0721947c6e 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'OpenBLAS' version = '0.2.13' -- GitLab From a3af9be886a767faa67784dae43cd58f10079268 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 19 Dec 2014 13:14:08 +0100 Subject: [PATCH 0282/1217] replace shared_lib_ext with SHLIB_EXT --- .../o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb index 0721947c6e..1291a991d1 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.9.2-LAPACK-3.5.0.eb @@ -44,7 +44,7 @@ installopts = "USE_THREAD=1 PREFIX=%(installdir)s" sanity_check_paths = { 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % shared_lib_ext], + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], 'dirs': [], } -- GitLab From 73e3518aa45646bfc63ecf881356a76b0de5fb9d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 19 Dec 2014 13:14:26 +0100 Subject: [PATCH 0283/1217] replace shared_lib_ext with SHLIB_EXT (2) --- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb index 05c5764ce4..f9db89a192 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb @@ -27,7 +27,7 @@ else: sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, shared_lib_ext) for libfile in ["mpi_cxx", "mpi_mpifh", + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"]] + -- GitLab From 946f11a493fbc130f74184c270d0b036ad8b6e49 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 19 Dec 2014 13:17:58 +0100 Subject: [PATCH 0284/1217] fix deprecated fallback to ConfigureMake easyblock in ScaLAPACK easyconfig --- .../ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb index be40d5d1ed..9b5e39a268 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ScaLAPACK' version = '2.0.2' -- GitLab From b6ebd645e9cb6a0d7f921b95b68099290d366f27 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 19 Dec 2014 13:46:23 +0100 Subject: [PATCH 0285/1217] bump to v1.16.1.0 + update release notes --- RELEASE_NOTES | 5 +++++ setup.py | 2 +- 2 files changed, 6 insertions(+), 1 deletion(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index ecad092752..01b1286c29 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -6,6 +6,11 @@ These release notes can also be consulted at http://easybuild.readthedocs.org/en The latest version of easybuild-easyconfig provides 3,066 easyconfig files, for 551 different software packages and 32 different (compiler) toolchains. +v1.16.1.0 (December 19th 2014) +------------------------------ + +- set default easyblock to ConfigureMake in TEMPLATE.eb (#1277) + v1.16.0.0 (December 18th 2014) ------------------------------ diff --git a/setup.py b/setup.py index 2a6a3c3331..a37161620a 100644 --- a/setup.py +++ b/setup.py @@ -41,7 +41,7 @@ from distutils import log # note: release candidates should be versioned as a pre-release, e.g. "1.1rc1" # 1.1-rc1 would indicate a post-release, i.e., and update of 1.1, so beware! -VERSION = "1.16.1.0dev" +VERSION = "1.16.1.0" API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From 79b14335e6d822505f90ec651c71ba26ecdef2e0 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 19 Dec 2014 14:20:48 +0100 Subject: [PATCH 0286/1217] add easyconfig file for EasyBuild v1.16.1 --- .../e/EasyBuild/EasyBuild-1.16.1.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb new file mode 100644 index 0000000000..83ed95495c --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb @@ -0,0 +1,29 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = "1.16.1" + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.0.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' -- GitLab From 68bdd2ba33bb179f279248bb05d7bb6b90bc8d4d Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 19 Dec 2014 16:30:07 +0100 Subject: [PATCH 0287/1217] add GCC-4.8.4 --- .../g/GCC/GCC-4.8.4-CLooG-multilib.eb | 40 +++++++++++++++++++ .../easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb | 38 ++++++++++++++++++ easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb | 28 +++++++++++++ 3 files changed, 106 insertions(+) create mode 100644 easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb create mode 100644 easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb create mode 100644 easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb new file mode 100644 index 0000000000..df7997f1cb --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb @@ -0,0 +1,40 @@ +name = "GCC" +version = '4.8.4' +versionsuffix = "-CLooG-multilib" + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://www.bastoul.net/cloog/pages/download/', # CLooG official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] +sources = [ + SOURCELOWER_TAR_GZ, + 'gmp-5.1.3.tar.bz2', + 'mpfr-3.1.2.tar.gz', + 'mpc-1.0.1.tar.gz', + 'cloog-0.18.1.tar.gz', + 'isl-0.11.1.tar.bz2', +] + +languages = ['c', 'c++', 'fortran', 'lto'] + +withcloog = True +withisl = True +clooguseisl = True + +multilib = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb new file mode 100644 index 0000000000..149e638932 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb @@ -0,0 +1,38 @@ +ame = "GCC" +version = '4.8.4' +versionsuffix = "-CLooG" + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://www.bastoul.net/cloog/pages/download/', # CLooG official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] +sources = [ + SOURCELOWER_TAR_GZ, + 'gmp-5.1.3.tar.bz2', + 'mpfr-3.1.2.tar.gz', + 'mpc-1.0.1.tar.gz', + 'cloog-0.18.0.tar.gz', + 'isl-0.11.1.tar.bz2', +] + +languages = ['c', 'c++', 'fortran', 'lto'] + +withcloog = True +withisl = True +clooguseisl = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb new file mode 100644 index 0000000000..36662c73c5 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb @@ -0,0 +1,28 @@ +name = "GCC" +version = '4.8.4' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official +] +sources = [ + SOURCELOWER_TAR_GZ, + 'gmp-5.1.3.tar.bz2', + 'mpfr-3.1.2.tar.gz', + 'mpc-1.0.1.tar.gz', +] + +languages = ['c', 'c++', 'fortran', 'lto'] + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' -- GitLab From 7002b45c0b143bcbf72531b905c0ce6c447d4c6a Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Sat, 20 Dec 2014 15:25:39 +0100 Subject: [PATCH 0288/1217] Fix typo --- easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb index 149e638932..7dfd911188 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb @@ -1,4 +1,4 @@ -ame = "GCC" +name = "GCC" version = '4.8.4' versionsuffix = "-CLooG" -- GitLab From b5c8060b45cb6a89ee08b847f73f0efc590931eb Mon Sep 17 00:00:00 2001 From: Bart Verleye Date: Mon, 22 Dec 2014 14:37:34 +1300 Subject: [PATCH 0289/1217] configs for AFNI and PyQt, adding R config for goolf-1.5.14' --- .../easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb | 275 ++++++++++++++++++ 1 file changed, 275 insertions(+) create mode 100644 easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb b/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb new file mode 100644 index 0000000000..c06ef496d4 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb @@ -0,0 +1,275 @@ +name = 'R' +version = '3.1.2' +bioc_version = '3.0' #2.14' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +#toolchain = {'name': 'iomkl', 'version': '6.5.4'} +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'precise': True, 'opt': True} # 'openmp' is enabled in R by default +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +#preconfigopts = 'BLAS_LIBS="$LIBBLAS_MT" LAPACK_LIBS="$LIBLAPACK_MT"' # use multi-thread BLAS/LAPACK +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' # use multi-thread BLAS/LAPACK + +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.2'), # or 6.3 + ('ncurses', '5.9'), + ('libpng', '1.6.10'), # for plotting # or 1.6.12 + ('libxml2', '2.9.1'), # for XML + ('SQLite', '3.8.4.3'), # for RSQLite + ('GEOS', '3.3.5'), # for rgeos, which is for spacetime + ('cURL', '7.29.0'), # for RCurl +# ('netCDF-parallel', '4.2'), # for pbdNCDF4 + ('Java', '1.8.0_5', '', True), # Java bindings are built if Java is found, might as well provide it +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['R', 'Rscript']] + + ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', + 'R.h', 'Rinterface.h', 'Rinternals.h', + 'Rmath.h', 'Rversion.h', 'S.h']] + + ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + + ['lib64/R/lib/libR.so'], + 'dirs': [] +} + + +def ext_options_extra(**kw): + options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.r-project.org/src/contrib', # alternative for current packages + ], + 'source_tmpl': '%(name)s_%(version)s.tar.gz', + } + for (name, value) in kw.items(): + options[name] = value + return options + +ext_options = ext_options_extra() + +if "easybuild R extension patching is still broken": + snow_options = ext_options_extra( + source_tmpl = '%(name)s_%(version)s-hpcpatched.tar.gz', source_urls = []) +else: + snow_options = ext_options_extra( + patches = ['snowfixedmpi.patch']) + +bioconductor_options = ext_options_extra( + source_urls = ['http://www.bioconductor.org/packages/%s/bioc/src/contrib/' % bioc_version]) + + +# Left out from original ictce easyconfig: translations & tcltk (extensions), libjpeg-turbo (dep) + +exts_list = [ + # default libraries, only here to sanity check their presence + 'base', + 'compiler', + 'datasets', + 'graphics', + 'grDevices', + 'grid', + 'methods', + 'parallel', + 'splines', + 'stats', + 'stats4', + 'tools', + 'utils', + + # non-standard libraries, should be specified with fixed versions! + ('Rmpi', '0.6-5', ext_options), + ('snow', '0.3-13', snow_options), + ('snowfall', '1.84-6', ext_options), + ('iterators', '1.0.7', ext_options), + ('codetools', '0.2-9', ext_options), + ('foreach', '1.4.2', ext_options), + ('doMPI', '0.2', ext_options), + ('doParallel', '1.0.8', ext_options), + ('rJava', '0.9-6', ext_options), + ('irace', '1.05', ext_options), + ('lattice', '0.20-29', ext_options), + ('RColorBrewer', '1.0-5', ext_options), + ('latticeExtra', '0.6-26', ext_options), + ('Matrix', '1.1-4', ext_options), + ('png', '0.1-7', ext_options), + ('Rcpp', '0.11.3', ext_options), + ('RcppEigen', '0.3.2.2.0', ext_options), + ('quadprog', '1.5-5', ext_options), + ('BB', '2014.10-1', ext_options), + ('MASS', '7.3-35', ext_options), + ('class', '7.3-11', ext_options), + ('e1071', '1.6-4', ext_options), + ('nnet', '7.3-8', ext_options), + ('car', '2.0-21', ext_options), + ('colorspace', '1.2-4', ext_options), + ('DEoptimR', '1.0-2', ext_options), + ('robustbase', '0.92-1', ext_options), + ('sp', '1.0-16', ext_options), + ('vcd', '1.3-2', ext_options), + ('rpart', '4.1-8', ext_options), + ('randomForest', '4.6-10', ext_options), + ('mice', '2.22', ext_options), + ('nlme', '3.1-118', ext_options), + ('nloptr', '1.0.4', ext_options), + ('minqa', '1.2.4', ext_options), + ('lme4', '1.1-7', ext_options), + ('ape', '3.1-4', ext_options), + ('mgcv', '1.8-3', ext_options), + ('logistf', '1.21', ext_options), + ('bitops', '1.0-6', ext_options), + ('RCurl', '1.95-4.3', ext_options), # For rtracklayer + ('boot', '1.3-13', ext_options), + ('foreign', '0.8-61', ext_options), + ('survival', '2.37-7', ext_options), + ('gam', '1.09.1', ext_options), + ('gamlss.data', '4.2-7', ext_options), + ('gamlss.dist', '4.3-1', ext_options), + ('hwriter', '1.3.2', ext_options), + ('KernSmooth', '2.23-13', ext_options), + ('zoo', '1.7-11', ext_options), + ('lmtest', '0.9-33', ext_options), + ('mnormt', '1.5-1', ext_options), + ('mvtnorm', '1.0-1', ext_options), + ('numDeriv', '2012.9-1', ext_options), + ('coda', '0.16-1', ext_options), + ('pscl', '1.4.6', ext_options), + ('sandwich', '2.3-2', ext_options), + ('sfsmisc', '1.0-26', ext_options), + ('spatial', '7.3-8', ext_options), + ('VGAM', '0.9-5', ext_options), + ('waveslim', '1.7.3', ext_options), + ('profileModel', '0.5-9', ext_options), + ('brglm', '0.5-9', ext_options), + ('deSolve', '1.11', ext_options), + ('tseriesChaos', '0.1-13', ext_options), + ('tseries', '0.10-32', ext_options), + ('neuRosim', '0.2-10', ext_options), + ('fastICA', '1.2-0', ext_options), + ('R.methodsS3', '1.6.1', ext_options), + ('R.oo', '1.18.0', ext_options), + ('Rniftilib', '0.0-32', ext_options), + ('igraph', '0.7.1', ext_options), + ('gbm', '2.1', ext_options), + ('stringr', '0.6.2', ext_options), + ('plyr', '1.8.1', ext_options), + ('reshape', '0.8.5', ext_options), + ('reshape2', '1.4', ext_options), + ('dichromat', '2.0-0', ext_options), + ('Formula', '1.1-2', ext_options), + ('cluster', '1.15.3', ext_options), + ('acepack', '1.3-3.3', ext_options), + ('Hmisc', '3.14-5', ext_options), + ('munsell', '0.4.2', ext_options), + ('labeling', '0.3', ext_options), + ('scales', '0.2.4', ext_options), + ('fastcluster', '1.1.13', ext_options), + ('digest', '0.6.4', ext_options), + ('gtable', '0.1.2', ext_options), + ('proto', '0.3-10', ext_options), + ('ggplot2', '1.0.0', ext_options), + ('maptools', '0.8-30', ext_options), + ('intervals', '0.15.0', ext_options), + ('xts', '0.9-7', ext_options), + ('rgeos', '0.3-8', ext_options), + ('spacetime', '1.1-1', ext_options), + ('FNN', '1.1', ext_options), + ('gstat', '1.0-19', ext_options), + ('deldir', '0.1-6', ext_options), + ('LearnBayes', '2.15', ext_options), + ('abind', '1.4-0', ext_options), + ('spdep', '0.5-77', ext_options), + ('splancs', '2.01-36', ext_options), + ('DCluster', '0.2-6', ext_options), + ('tensor', '1.5', ext_options), + ('polyclip', '1.3-0', ext_options), + ('goftest', '1.0-2', ext_options), + ('spatstat', '1.39-1', ext_options), + + ('getopt', '1.20.0', ext_options), + ('optparse', '1.2.0', ext_options), # for QIIME + ('permute', '0.8-3', ext_options), + ('vegan', '2.2-0', ext_options), # for QIIME + + ('spam', '1.0-1', ext_options), + ('RandomFields', '3.0.35', ext_options), # 3.0.44 requires Tcl etc. + ('geoR', '1.7-4.1', ext_options), + ('geoRglm', '0.9-4', ext_options), + ('R2WinBUGS', '2.1-19', ext_options), + ('R2OpenBUGS', '3.2-2.2', ext_options), + ('akima', '0.5-11', ext_options), + ('rjags', '3-14', ext_options), + ('R2jags', '0.04-03', ext_options), + ('DBI', '0.3.1', ext_options), + ('xtable', '1.7-4', ext_options), + ('RSQLite', '1.0.0', ext_options), + ('locfit', '1.5-9.1', ext_options), + ('lpSolve', '5.6.10', ext_options), + ('glmmML', '1.0', ext_options), + ('survey', '3.30-3', ext_options), + ('rlecuyer', '0.3-3', ext_options), + ('crs', '0.15-23', ext_options), + ('dclone', '2.0-0', ext_options), + + ('caTools', '1.17.1', ext_options), + ('gtools', '3.4.1', ext_options), + ('gdata', '2.13.3', ext_options), + ('gplots', '2.14.2', ext_options), + ('gsalib', '2.0', ext_options), + ('inline', '0.3.13', ext_options), + ('RcppArmadillo', '0.4.500.0', ext_options), + + ('XML', '3.98-1.1', ext_options), + ('spgrass6', '0.8-6', ext_options), + + ('checkmate', '1.5.0', ext_options), + ('BBmisc', '1.8', ext_options), + ('fail', '1.2', ext_options), + ('brew', '1.0-6', ext_options), + ('base64enc', '0.1-2', ext_options), + ('sendmailR', '1.2-1', ext_options), + ('BatchJobs', '1.5', ext_options), + + ('BiocInstaller', '1.16.1', bioconductor_options), + ('BiocGenerics', '0.12.1', bioconductor_options), + ('Biobase', '2.26.0', bioconductor_options), + ('S4Vectors', '0.4.0', bioconductor_options), + ('IRanges', '2.0.0', bioconductor_options), + ('XVector', '0.6.0', bioconductor_options), + ('zlibbioc', '1.12.0', bioconductor_options), + ('Biostrings', '2.34.0', bioconductor_options), + ('GenomeInfoDb', '1.2.3', bioconductor_options), + ('AnnotationDbi', '1.28.1', bioconductor_options), + ('GenomicRanges', '1.18.1', bioconductor_options), + ('Rsamtools', '1.18.2', bioconductor_options), + ('BiocParallel', '1.0.0', bioconductor_options), + ('GenomicAlignments', '1.2.1', bioconductor_options), + ('rtracklayer', '1.26.2', bioconductor_options), + ('BSgenome', '1.34.0', bioconductor_options), + ('graph', '1.44.0', bioconductor_options), + ('annotate', '1.44.0', bioconductor_options), + ('genefilter', '1.48.1', bioconductor_options), + ('geneplotter', '1.44.0', bioconductor_options), + ('DESeq', '1.18.0', bioconductor_options), + ('DESeq2', '1.6.2', bioconductor_options), + ('ShortRead', '1.24.0', bioconductor_options), + + ('rlecuyer', '0.3-3', ext_options), + ('pbdMPI', '0.2-5', ext_options), + ('pbdSLAP', '0.1-9', ext_options), + ('pbdBASE', '0.2-3', ext_options), # with icc: Rtools/tools.c(41): error: incorrect use of va_start + ('pbdDMAT', '0.2-3', ext_options), # depends on pdbBASE + #('pbdNCDF4', '0.1-4', ext_options), # add parallel netCDF as a dependency if this gets added + + #('BH', '1.54.0-5', ext_options), # Boost headers for rstan + #('rstan', '2.4', ext_options_extra(source_urls = ['http://rstan.org/repo/src/contrib/'])), +] + +moduleclass = 'lang' -- GitLab From 9474643f13bb40f1c95e0ffe761076ce7b1d398b Mon Sep 17 00:00:00 2001 From: Bart Verleye Date: Mon, 22 Dec 2014 14:42:52 +1300 Subject: [PATCH 0290/1217] adding config for SIP too --- .../s/SIP/SIP-4.16.4-goolf-1.5.14.eb | 20 +++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100644 easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14.eb new file mode 100644 index 0000000000..5b0fc8c465 --- /dev/null +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMakePythonPackage' +name = 'SIP' +version = '4.16.4' + +homepage = 'http://www.riverbankcomputing.com/software/sip/' +description = """ +SIP is a tool that makes it very easy to create Python bindings for C and C++ +libraries. It was originally developed to create PyQt, the Python bindings +for the Qt toolkit, but can be used to create bindings for any C or C++ library. +""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://sourceforge.net/projects/pyqt/files/sip/sip-4.16.4'] + +dependencies = [('Python', '2.7.6')] + +configopts = " configure.py" + -- GitLab From 628557f8279cd72c1b40dbbe933e8dcf90199a7c Mon Sep 17 00:00:00 2001 From: Bart Verleye Date: Mon, 22 Dec 2014 15:00:33 +1300 Subject: [PATCH 0291/1217] adding more configs --- .../AFNI/AFNI-linux_openmp_64-goolf-1.5.14.eb | 33 +++++++++++++++++++ .../PyQt/PyQt-x11-gpl-4.11.3-goolf-1.5.14.eb | 25 ++++++++++++++ 2 files changed, 58 insertions(+) create mode 100644 easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/p/PyQt/PyQt-x11-gpl-4.11.3-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14.eb b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14.eb new file mode 100644 index 0000000000..d90c936191 --- /dev/null +++ b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14.eb @@ -0,0 +1,33 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Bart Verleye +# Center for eResearch, Auckland + + +name = 'AFNI' +version = 'linux_openmp_64' +# see VersionDate in caps3 output + +easyblock = 'PackedBinary' + +homepage = 'http://afni.nimh.nih.gov' +description = """Free software for analysis and display of FMRI data """ + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +source_urls = [('http://afni.nimh.nih.gov/pub/dist/tgz/')] +sources = ['%(version)s.tgz'] + +dependencies = [ + ('R', '3.1.2'), + ('PyQt', 'x11-gpl-4.11.3'), +] + +osdependencies = [ + ('libXp','tcsh') +] + +sanity_check_paths = { + 'files': ['afni'], + 'dirs': [], +} + diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-x11-gpl-4.11.3-goolf-1.5.14.eb b/easybuild/easyconfigs/p/PyQt/PyQt-x11-gpl-4.11.3-goolf-1.5.14.eb new file mode 100644 index 0000000000..6c3e97606d --- /dev/null +++ b/easybuild/easyconfigs/p/PyQt/PyQt-x11-gpl-4.11.3-goolf-1.5.14.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMakePythonPackage' +name = 'PyQt' +version = 'x11-gpl-4.11.3' + + + + +homepage = 'http://www.riverbankcomputing.co.uk/software/pyqt' +description = """ +PyQt is a set of Python v2 and v3 bindings for Digia's Qt application framework +and runs on all platforms supported by Qt including Windows, MacOS/X and Linux. +PyQt5 supports Qt v5. PyQt4 supports Qt v4 and will build against Qt v5. +The bindings are implemented as a set of Python modules and contain over 620 classes. +""" +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://sourceforge.net/projects/pyqt/files/PyQt4/PyQt-4.11.3'] + +dependencies = [('Python', '2.7.6'), + ('SIP','4.16.4'), + ('Qt','4.8.5')] + +configopts = " configure-ng.py --confirm-license" + -- GitLab From 1bfc8ce6fc6b1042d4e41ce4407536ef2d3b21cb Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 6 Jan 2015 13:55:51 +0100 Subject: [PATCH 0292/1217] bump to OpenMPI v1.8.4 in foss/2015a --- easybuild/easyconfigs/f/foss/foss-2015a.eb | 2 +- .../o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb | 38 +++++++++++++++++++ 2 files changed, 39 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/f/foss/foss-2015a.eb b/easybuild/easyconfigs/f/foss/foss-2015a.eb index a7ffc225bc..4aea01af45 100644 --- a/easybuild/easyconfigs/f/foss/foss-2015a.eb +++ b/easybuild/easyconfigs/f/foss/foss-2015a.eb @@ -28,7 +28,7 @@ comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) # because of toolchain preperation functions dependencies = [ comp, - ('OpenMPI', '1.8.3', '', comp), + ('OpenMPI', '1.8.4', '', comp), (blaslib, blasver, blassuff, comp), ('FFTW', '3.3.4', '', comp_mpi_tc), ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb new file mode 100644 index 0000000000..6b3ec45d87 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb @@ -0,0 +1,38 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.8.4' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +dependencies = [('hwloc', '1.10.0')] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +# needed for --with-openib +if OS_NAME in ['debian', 'ubuntu']: + osdependencies = ['libibverbs-dev'] +else: + # OK for OS_NAME == redhat, fedora, RHEL, SL, centos + osdependencies = ['libibverbs-devel'] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' -- GitLab From 2fcd880748f3254c5a8d2e50c2dc3f8e06fef33a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 6 Jan 2015 16:45:03 +0100 Subject: [PATCH 0293/1217] also bump OpenMPI version to 1.8.4 in gompi/2015a easyconfig --- easybuild/easyconfigs/g/gompi/gompi-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/gompi/gompi-2015a.eb b/easybuild/easyconfigs/g/gompi/gompi-2015a.eb index c4f7317ea1..149ce234a6 100644 --- a/easybuild/easyconfigs/g/gompi/gompi-2015a.eb +++ b/easybuild/easyconfigs/g/gompi/gompi-2015a.eb @@ -16,7 +16,7 @@ comp = (compname, compver) # compiler toolchain dependencies dependencies = [ comp, - ('OpenMPI', '1.8.3', '', comp), + ('OpenMPI', '1.8.4', '', comp), ] moduleclass = 'toolchain' -- GitLab From 9b6f3b6aa0b7c1c1da93d730068fec5505c6762c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 6 Jan 2015 16:54:05 +0100 Subject: [PATCH 0294/1217] remove faulty 'easyblock = ConfigureMake' line from ScaLAPACK easyconfig --- .../ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb index 9b5e39a268..be40d5d1ed 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'ScaLAPACK' version = '2.0.2' -- GitLab From 1f06c2c43c152b2170605a2af9a5d159535e45a2 Mon Sep 17 00:00:00 2001 From: pescobar Date: Tue, 6 Jan 2015 17:15:25 +0100 Subject: [PATCH 0295/1217] added newer cutadapt versions. Updated download url --- .../cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb | 37 +++++++++++++++++++ .../cutadapt-1.5-foss-2014b-Python-2.7.8.eb | 37 +++++++++++++++++++ .../cutadapt-1.6-foss-2014b-Python-2.7.8.eb | 37 +++++++++++++++++++ .../cutadapt-1.7-foss-2014b-Python-2.7.8.eb | 37 +++++++++++++++++++ .../cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb | 37 +++++++++++++++++++ 5 files changed, 185 insertions(+) create mode 100644 easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb create mode 100644 easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb create mode 100644 easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb create mode 100644 easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb create mode 100644 easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000..cf67752ee4 --- /dev/null +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics (SIB) +# Biozentrum - University of Basel + +easyblock = "PythonPackage" + +name = 'cutadapt' +version = '1.4.1' + +homepage = 'http://code.google.com/p/cutadapt/' +description = """ cutadapt removes adapter sequences from high-throughput sequencing data. + This is usually necessary when the read length of the sequencing machine is longer than + the molecule that is sequenced, for example when sequencing microRNAs. """ + +toolchain = {'name': 'foss', 'version': '2014b'} + +source_urls = ['https://github.com/marcelm/cutadapt/archive/'] +sources = ['v%(version)s.tar.gz'] + +python = 'Python' +pyver = '2.7.8' +pyshortver = '.'.join(pyver.split('.')[:2]) + +versionsuffix = "-%s-%s" % (python, pyver) + +dependencies = [ + (python, pyver), +] + +sanity_check_paths = { + 'files': ['bin/cutadapt',], + 'dirs': [], +} + +moduleclass = 'bio' + diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000..f9435f3efa --- /dev/null +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics (SIB) +# Biozentrum - University of Basel + +easyblock = "PythonPackage" + +name = 'cutadapt' +version = '1.5' + +homepage = 'http://code.google.com/p/cutadapt/' +description = """ cutadapt removes adapter sequences from high-throughput sequencing data. + This is usually necessary when the read length of the sequencing machine is longer than + the molecule that is sequenced, for example when sequencing microRNAs. """ + +toolchain = {'name': 'foss', 'version': '2014b'} + +source_urls = ['https://github.com/marcelm/cutadapt/archive/'] +sources = ['v%(version)s.tar.gz'] + +python = 'Python' +pyver = '2.7.8' +pyshortver = '.'.join(pyver.split('.')[:2]) + +versionsuffix = "-%s-%s" % (python, pyver) + +dependencies = [ + (python, pyver), +] + +sanity_check_paths = { + 'files': ['bin/cutadapt',], + 'dirs': [], +} + +moduleclass = 'bio' + diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000..b165a51c0c --- /dev/null +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics (SIB) +# Biozentrum - University of Basel + +easyblock = "PythonPackage" + +name = 'cutadapt' +version = '1.6' + +homepage = 'http://code.google.com/p/cutadapt/' +description = """ cutadapt removes adapter sequences from high-throughput sequencing data. + This is usually necessary when the read length of the sequencing machine is longer than + the molecule that is sequenced, for example when sequencing microRNAs. """ + +toolchain = {'name': 'foss', 'version': '2014b'} + +source_urls = ['https://github.com/marcelm/cutadapt/archive/'] +sources = ['v%(version)s.tar.gz'] + +python = 'Python' +pyver = '2.7.8' +pyshortver = '.'.join(pyver.split('.')[:2]) + +versionsuffix = "-%s-%s" % (python, pyver) + +dependencies = [ + (python, pyver), +] + +sanity_check_paths = { + 'files': ['bin/cutadapt',], + 'dirs': [], +} + +moduleclass = 'bio' + diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000..fbe7a035d3 --- /dev/null +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics (SIB) +# Biozentrum - University of Basel + +easyblock = "PythonPackage" + +name = 'cutadapt' +version = '1.7' + +homepage = 'http://code.google.com/p/cutadapt/' +description = """ cutadapt removes adapter sequences from high-throughput sequencing data. + This is usually necessary when the read length of the sequencing machine is longer than + the molecule that is sequenced, for example when sequencing microRNAs. """ + +toolchain = {'name': 'foss', 'version': '2014b'} + +source_urls = ['https://github.com/marcelm/cutadapt/archive/'] +sources = ['v%(version)s.tar.gz'] + +python = 'Python' +pyver = '2.7.8' +pyshortver = '.'.join(pyver.split('.')[:2]) + +versionsuffix = "-%s-%s" % (python, pyver) + +dependencies = [ + (python, pyver), +] + +sanity_check_paths = { + 'files': ['bin/cutadapt',], + 'dirs': [], +} + +moduleclass = 'bio' + diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb new file mode 100644 index 0000000000..a5093a2f21 --- /dev/null +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics (SIB) +# Biozentrum - University of Basel + +easyblock = "PythonPackage" + +name = 'cutadapt' +version = '1.7.1' + +homepage = 'http://code.google.com/p/cutadapt/' +description = """ cutadapt removes adapter sequences from high-throughput sequencing data. + This is usually necessary when the read length of the sequencing machine is longer than + the molecule that is sequenced, for example when sequencing microRNAs. """ + +toolchain = {'name': 'foss', 'version': '2014b'} + +source_urls = ['https://github.com/marcelm/cutadapt/archive/'] +sources = ['v%(version)s.tar.gz'] + +python = 'Python' +pyver = '2.7.8' +pyshortver = '.'.join(pyver.split('.')[:2]) + +versionsuffix = "-%s-%s" % (python, pyver) + +dependencies = [ + (python, pyver), +] + +sanity_check_paths = { + 'files': ['bin/cutadapt',], + 'dirs': [], +} + +moduleclass = 'bio' + -- GitLab From 21757161bea8c410c4b475331f0c5c17b1b5f518 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 6 Jan 2015 17:36:58 +0100 Subject: [PATCH 0296/1217] remove faulty 'easyblock = ConfigureMake' line from HPL easyconfig --- easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb index b069065183..225cb3be6a 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015a.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'HPL' version = '2.1' -- GitLab From 73e2d86f007d4cc9e26b251de413115628dce5b9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 7 Jan 2015 08:28:00 +0100 Subject: [PATCH 0297/1217] remove faulty 'easyblock = ConfigureMake' line from HPL easyconfig --- easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb index 0499481e32..97b6ceedd3 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015a.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'HPL' version = '2.1' -- GitLab From 0369d07767d633f78d96f70a54b266138f81e4a4 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 7 Jan 2015 10:24:25 +0100 Subject: [PATCH 0298/1217] Added libelf --- .../easyconfigs/l/libelf/libelf-0.8.13.eb | 27 +++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/l/libelf/libelf-0.8.13.eb diff --git a/easybuild/easyconfigs/l/libelf/libelf-0.8.13.eb b/easybuild/easyconfigs/l/libelf/libelf-0.8.13.eb new file mode 100644 index 0000000000..59c9c0bdc6 --- /dev/null +++ b/easybuild/easyconfigs/l/libelf/libelf-0.8.13.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libelf' +version = '0.8.13' + +homepage = 'http://www.mr511.de/software/english.html' +description = """TEMPLATE DESCRIPTION""" + +toolchain = {'name': 'dummy', 'version': ''} +toolchainopts = {} + +# For sources line to work correctly with --try-software-version, you MUST employ %s OR use a construct like SOURCE_TAR_GZ +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.mr511.de/software/'] + +patches = [] + +dependencies = [] + +# The sanity test MUST be tuned before going production and submitting your contribution to upstream git repositories +sanity_check_paths = { + 'files': [], + 'dirs': ["."] +} + +# You SHOULD change the following line; Kindly consult other easyconfigs for possible options +moduleclass = 'devel' -- GitLab From 41296a5cfe67f9c63cf5d33c06b629ef271535bf Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 7 Jan 2015 10:24:49 +0100 Subject: [PATCH 0299/1217] Added libdwarf --- .../l/libdwarf/libdwarf-20140805.eb | 32 +++++++++++++++++++ 1 file changed, 32 insertions(+) create mode 100644 easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb diff --git a/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb b/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb new file mode 100644 index 0000000000..1ad9fa408a --- /dev/null +++ b/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb @@ -0,0 +1,32 @@ +easyblock = 'MakeCp' + +name = 'libdwarf' +version = '20140805' + +homepage = 'http://www.prevanders.net/dwarf.html' +description = """The DWARF Debugging Information Format is of interest to programmers working on compilers +and debuggers (and anyone interested in reading or writing DWARF information))""" + +toolchain = {'name': 'dummy', 'version': ''} +toolchainopts = {} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.prevanders.net'] + +with_configure = True +preconfigopts = "CFLAGS='-fPIC' " +configopts = "--enable-shared " + +# dirty... +prebuildopts = ' LD_LIBRARY_PATH="../libdwarf:$LD_LIBRARY_PATH" ' + +files_to_copy = [(["dwarfdump2/dwarfdump"], "bin"), (["libdwarf/libdwarf.a", "libdwarf/libdwarf.so"], "lib"), (["libdwarf/libdwarf.h"], "include")] + +dependencies = [('libelf', '0.8.13')] + +sanity_check_paths = { + 'files': [], + 'dirs': ["."] +} + +moduleclass = 'devel' -- GitLab From 5d4a18222f959132917ce21c815f71fc75b5db96 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 7 Jan 2015 11:39:32 +0100 Subject: [PATCH 0300/1217] Small correction to libdwarf --- easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb b/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb index 1ad9fa408a..0dd518092c 100644 --- a/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb +++ b/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb @@ -13,17 +13,17 @@ toolchainopts = {} sources = [SOURCE_TAR_GZ] source_urls = ['http://www.prevanders.net'] +dependencies = [('libelf', '0.8.13')] + with_configure = True -preconfigopts = "CFLAGS='-fPIC' " +preconfigopts = "CFLAGS='-fPIC $CFLAGS' " configopts = "--enable-shared " -# dirty... +# This is dirty but libdwarf cannot find it's own library in the build process... prebuildopts = ' LD_LIBRARY_PATH="../libdwarf:$LD_LIBRARY_PATH" ' files_to_copy = [(["dwarfdump2/dwarfdump"], "bin"), (["libdwarf/libdwarf.a", "libdwarf/libdwarf.so"], "lib"), (["libdwarf/libdwarf.h"], "include")] -dependencies = [('libelf', '0.8.13')] - sanity_check_paths = { 'files': [], 'dirs': ["."] -- GitLab From 03ead8f176259c9fd786764171106a8ceeede752 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 7 Jan 2015 15:03:00 +0100 Subject: [PATCH 0301/1217] add easyconfigs for IMB with different toolchains --- .../i/IMB/IMB-4.0.1-goolf-1.5.14-no-OFED.eb | 30 +++++++++++++++++++ .../i/IMB/IMB-4.0.1-goolf-1.6.10.eb | 30 +++++++++++++++++++ .../i/IMB/IMB-4.0.1-intel-2015a.eb | 28 +++++++++++++++++ 3 files changed, 88 insertions(+) create mode 100644 easybuild/easyconfigs/i/IMB/IMB-4.0.1-goolf-1.5.14-no-OFED.eb create mode 100644 easybuild/easyconfigs/i/IMB/IMB-4.0.1-goolf-1.6.10.eb create mode 100644 easybuild/easyconfigs/i/IMB/IMB-4.0.1-intel-2015a.eb diff --git a/easybuild/easyconfigs/i/IMB/IMB-4.0.1-goolf-1.5.14-no-OFED.eb b/easybuild/easyconfigs/i/IMB/IMB-4.0.1-goolf-1.5.14-no-OFED.eb new file mode 100644 index 0000000000..fdead3abb2 --- /dev/null +++ b/easybuild/easyconfigs/i/IMB/IMB-4.0.1-goolf-1.5.14-no-OFED.eb @@ -0,0 +1,30 @@ +easyblock = 'MakeCp' + +name = 'IMB' +version = '4.0.1' + +homepage = 'https://software.intel.com/en-us/articles/intel-mpi-benchmarks' +description = """The Intel MPI Benchmarks perform a set of MPI performance measurements for point-to-point and + global communication operations for a range of message sizes""" + +toolchain = {'name': 'goolf', 'version': '1.5.14-no-OFED'} +toolchainopts = {'usempi': True} + +source_urls = ['https://software.intel.com/sites/default/files/managed/34/aa/'] +sources = ['%(name)s_%(version)s.tgz'] + +prebuildopts = "cd src && " +# not built, requires MPI-3 support not present yet in OpenMPI v1.6.x: NBC, RMA +targets = ['MPI1', 'EXT', 'IO'] +buildopts = ["-f make_mpich IMB-%s MPI_HOME=$EBROOTOPENMPI" % t for t in targets] + +parallel = 1 + +files_to_copy = [(['src/IMB-*'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/IMB-%s' % t for t in targets], + 'dirs': [], +} + +moduleclass = 'perf' diff --git a/easybuild/easyconfigs/i/IMB/IMB-4.0.1-goolf-1.6.10.eb b/easybuild/easyconfigs/i/IMB/IMB-4.0.1-goolf-1.6.10.eb new file mode 100644 index 0000000000..d89a160077 --- /dev/null +++ b/easybuild/easyconfigs/i/IMB/IMB-4.0.1-goolf-1.6.10.eb @@ -0,0 +1,30 @@ +easyblock = 'MakeCp' + +name = 'IMB' +version = '4.0.1' + +homepage = 'https://software.intel.com/en-us/articles/intel-mpi-benchmarks' +description = """The Intel MPI Benchmarks perform a set of MPI performance measurements for point-to-point and + global communication operations for a range of message sizes""" + +toolchain = {'name': 'goolf', 'version': '1.6.10'} +toolchainopts = {'usempi': True} + +source_urls = ['https://software.intel.com/sites/default/files/managed/34/aa/'] +sources = ['%(name)s_%(version)s.tgz'] + +prebuildopts = "cd src && " +# RMA not built, due to missing required MPI-3 support in OpenMPI v1.7.3 +targets = ['MPI1', 'EXT', 'IO', 'NBC'] +buildopts = ["-f make_mpich IMB-%s MPI_HOME=$EBROOTOPENMPI" % t for t in targets] + +parallel = 1 + +files_to_copy = [(['src/IMB-*'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/IMB-%s' % t for t in targets], + 'dirs': [], +} + +moduleclass = 'perf' diff --git a/easybuild/easyconfigs/i/IMB/IMB-4.0.1-intel-2015a.eb b/easybuild/easyconfigs/i/IMB/IMB-4.0.1-intel-2015a.eb new file mode 100644 index 0000000000..5880d96917 --- /dev/null +++ b/easybuild/easyconfigs/i/IMB/IMB-4.0.1-intel-2015a.eb @@ -0,0 +1,28 @@ +easyblock = 'MakeCp' + +name = 'IMB' +version = '4.0.1' + +homepage = 'https://software.intel.com/en-us/articles/intel-mpi-benchmarks' +description = """The Intel MPI Benchmarks perform a set of MPI performance measurements for point-to-point and + global communication operations for a range of message sizes""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'usempi': True} + +source_urls = ['https://software.intel.com/sites/default/files/managed/34/aa/'] +sources = ['%(name)s_%(version)s.tgz'] + +prebuildopts = "cd src && " +buildopts = "all" + +parallel = 1 + +files_to_copy = [(['src/IMB-*'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/IMB-EXT', 'bin/IMB-IO', 'bin/IMB-MPI1', 'bin/IMB-NBC', 'bin/IMB-RMA'], + 'dirs': [], +} + +moduleclass = 'perf' -- GitLab From aafcf8180cb010aeae778a9fc58302a7ca6026ef Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 7 Jan 2015 15:18:51 +0100 Subject: [PATCH 0302/1217] libdwarf: install more --- easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb b/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb index 0dd518092c..caec041840 100644 --- a/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb +++ b/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb @@ -22,7 +22,7 @@ configopts = "--enable-shared " # This is dirty but libdwarf cannot find it's own library in the build process... prebuildopts = ' LD_LIBRARY_PATH="../libdwarf:$LD_LIBRARY_PATH" ' -files_to_copy = [(["dwarfdump2/dwarfdump"], "bin"), (["libdwarf/libdwarf.a", "libdwarf/libdwarf.so"], "lib"), (["libdwarf/libdwarf.h"], "include")] +files_to_copy = [(["dwarfdump2/dwarfdump"], "bin"), (["libdwarf/libdwarf.a", "libdwarf/libdwarf.so"], "lib"), (["libdwarf/libdwarf.h", "libdwarf/dwarf.h"], "include")] sanity_check_paths = { 'files': [], -- GitLab From 66e8cee2f2ac412821b7626cdd93f4f462ca8577 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Wed, 7 Jan 2015 15:36:28 +0100 Subject: [PATCH 0303/1217] added new cufflinks --- .../b/Boost/Boost-1.55.0-intel-2015a.eb | 25 ++++++++++++++++ .../b/bzip2/bzip2-1.0.6-intel-2015a.eb | 15 ++++++++++ .../Cufflinks/Cufflinks-2.2.1-intel-2015a.eb | 29 +++++++++++++++++++ .../e/Eigen/Eigen-3.2.3-intel-2015a.eb | 16 ++++++++++ .../libreadline-6.3-intel-2015a.eb | 27 +++++++++++++++++ .../n/ncurses/ncurses-5.9-intel-2015a.eb | 15 ++++++++++ .../s/SAMtools/SAMtools-0.1.19-intel-2015a.eb | 21 ++++++++++++++ .../z/zlib/zlib-1.2.8-intel-2015a.eb | 24 +++++++++++++++ 8 files changed, 172 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2015a.eb create mode 100644 easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-intel-2015a.eb create mode 100644 easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.2.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/e/Eigen/Eigen-3.2.3-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2015a.eb create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb create mode 100644 easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-intel-2015a.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015a.eb diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2015a.eb b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2015a.eb new file mode 100644 index 0000000000..39ae5a52a4 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2015a.eb @@ -0,0 +1,25 @@ +name = 'Boost' +version = '1.55.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +pythonversion = '2.7.8' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-intel-2015a.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-intel-2015a.eb new file mode 100644 index 0000000000..5ab2c3867d --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-intel-2015a.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.2.1-intel-2015a.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.2.1-intel-2015a.eb new file mode 100644 index 0000000000..29554f44db --- /dev/null +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.2.1-intel-2015a.eb @@ -0,0 +1,29 @@ +easyblock = 'EB_Cufflinks' +name = 'Cufflinks' +version = '2.2.1' + +homepage = 'http://cole-trapnell-lab.github.io/cufflinks/' +description = """Transcript assembly, differential expression, and differential regulation for RNA-Seq""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/'] + +dependencies = [ + ('Boost', '1.55.0', '-Python-2.7.8'), # issues with boost > 1.55, see https://github.com/cole-trapnell-lab/cufflinks/issues/3 + ('SAMtools', '0.1.19'), + ('Eigen', '3.2.3'), + ('zlib', '1.2.8'), +] + +configopts = '--enable-intel64 --with-boost=$EBROOTBOOST --with-bam-libdir=${EBROOTSAMTOOLS}/lib' +preconfigopts = 'CPPFLAGS=-I$EBROOTEIGEN/include' + +sanity_check_paths = { + 'files': ['bin/cufflinks'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.3-intel-2015a.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.3-intel-2015a.eb new file mode 100644 index 0000000000..559c4eb64c --- /dev/null +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.3-intel-2015a.eb @@ -0,0 +1,16 @@ +easyblock = 'EB_Eigen' + +name = 'Eigen' +version = '3.2.3' + +homepage = 'http://eigen.tuxfamily.org/index.php?title=Main_Page' +description = """Eigen is a C++ template library for linear algebra: + matrices, vectors, numerical solvers, and related algorithms.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get'] +sources = ['%(version)s.tar.bz2'] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2015a.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2015a.eb new file mode 100644 index 0000000000..1461617d20 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2015a.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb new file mode 100644 index 0000000000..3bcfd50e3f --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb @@ -0,0 +1,15 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-intel-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-intel-2015a.eb new file mode 100644 index 0000000000..d053a9fc39 --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-intel-2015a.eb @@ -0,0 +1,21 @@ +name = 'SAMtools' +version = '0.1.19' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [('http://sourceforge.net/projects/samtools/files/%(namelower)s/%(version)s', 'download')] + +patches = ['SAMtools-0.1.19_Makefile-ncurses.patch'] + +dependencies = [ + ('ncurses', '5.9'), + ('zlib', '1.2.8'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015a.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015a.eb new file mode 100644 index 0000000000..81a7fb149f --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From d859b4e4978c9107a9955c070e790bb046ead184 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Wed, 7 Jan 2015 16:16:31 +0100 Subject: [PATCH 0304/1217] fixed filename --- ....0-intel-2015a.eb => Boost-1.55.0-intel-2015a-Python-2.7.8.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/b/Boost/{Boost-1.55.0-intel-2015a.eb => Boost-1.55.0-intel-2015a-Python-2.7.8.eb} (100%) diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2015a.eb b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2015a-Python-2.7.8.eb similarity index 100% rename from easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2015a.eb rename to easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2015a-Python-2.7.8.eb -- GitLab From 62b1140f7dd8db0e83e7f720a06eca0d1016c716 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Wed, 7 Jan 2015 16:26:42 +0100 Subject: [PATCH 0305/1217] added forgotten python --- .../p/Python/Python-2.7.8-intel-2015a.eb | 94 +++++++++++++++++++ 1 file changed, 94 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb new file mode 100644 index 0000000000..f55821e7cf --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb @@ -0,0 +1,94 @@ +name = 'Python' +version = '2.7.8' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.1' +scipyversion = '0.14.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# libffi build in python is still broken, see http://bugs.python.org/issue4130 +patches = ['python-2.7_libffi-include-xmmintrin.patch'] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +] + +# order is important! +# Version updated 08/JULY/2014 +exts_list = [ + ('setuptools', '5.4.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '1.5.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.3', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-1.8.0-mkl.patch', # % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['https://mpi4py.googlecode.com/files/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.9.1', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.20.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('dateutil', '2.2', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('paramiko', '1.14.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +moduleclass = 'lang' -- GitLab From b0b823f8caa5481d5d9b87b54c90eb8f6e133f63 Mon Sep 17 00:00:00 2001 From: Markus Geimer Date: Thu, 8 Jan 2015 08:52:17 +0100 Subject: [PATCH 0306/1217] Remove 'lto' from list of supported languages --- easybuild/easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.7.4-CLooG-PPL.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.7.4.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG-multilib.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.8.2-multilib.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.8.3.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG-multilib.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.9.0.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG-multilib.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.9.1.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb | 2 +- 29 files changed, 29 insertions(+), 29 deletions(-) diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb index a1d6e1e554..212d837eb2 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb @@ -29,7 +29,7 @@ sources = [ 'ppl-%s.tar.gz' % pplver, ] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] withcloog = True withppl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb b/easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb index d2eb78bb89..97b63a7dfa 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb @@ -20,7 +20,7 @@ sources = [ 'mpc-0.9.tar.gz', ] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb b/easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb index bf4adc61a6..612489b92c 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb @@ -20,7 +20,7 @@ sources = [ 'mpc-1.0.1.tar.gz', ] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] patches = ['mpfr-3.1.0-changes_fix.patch'] diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb index dd3b7c67d1..30d7d0fa79 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb @@ -31,7 +31,7 @@ sources = [ patches = ['mpfr-3.1.0-changes_fix.patch'] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] withcloog = True withppl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb index 8ad3d81634..1782b94bb7 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb @@ -22,7 +22,7 @@ source_urls = [ patches = ['mpfr-3.1.0-changes_fix.patch'] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb index 107e776983..4b5d149d00 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb @@ -31,7 +31,7 @@ sources = [ patches = ['mpfr-3.1.0-changes_fix.patch'] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] withcloog = True withppl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb index ec25afed60..ca98da2565 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb @@ -22,7 +22,7 @@ sources = [ patches = ['mpfr-3.1.0-changes_fix.patch'] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb index 7b4dfcf410..12e831324b 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb @@ -22,7 +22,7 @@ sources = [ patches = ['mpfr-3.1.0-changes_fix.patch'] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb index 61afac13bc..b9d63d8009 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb @@ -34,7 +34,7 @@ patches = [ 'mpfr-3.1.0-changes_fix.patch', ] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] withcloog = True withppl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb index ed1e5699b6..09e9dae03b 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb @@ -22,7 +22,7 @@ sources = [ patches = ['mpfr-3.1.0-changes_fix.patch'] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.4-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.4-CLooG-PPL.eb index 87bebedd2f..e5ae9ca655 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.4-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.4-CLooG-PPL.eb @@ -34,7 +34,7 @@ patches = [ 'mpfr-3.1.0-changes_fix.patch', ] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] withcloog = True withppl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.4.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.4.eb index c8b1b531be..986014a36d 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.4.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.4.eb @@ -22,7 +22,7 @@ sources = [ patches = ['mpfr-3.1.0-changes_fix.patch'] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb index e257f697f9..5ccb3091a1 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb @@ -26,7 +26,7 @@ sources = [ 'isl-0.11.1.tar.bz2', ] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] withcloog = True withisl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb index cc480ab69c..d59607eece 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb @@ -20,7 +20,7 @@ sources = [ 'mpc-1.0.1.tar.gz', ] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG-multilib.eb index 892ae0f738..64fb3ab48a 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG-multilib.eb @@ -26,7 +26,7 @@ sources = [ 'isl-0.11.1.tar.bz2', ] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] withcloog = True withisl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG.eb index c6d7f87e04..64e4242a83 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG.eb @@ -26,7 +26,7 @@ sources = [ 'isl-0.11.1.tar.bz2', ] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] withcloog = True withisl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-multilib.eb index 509d5e27ca..1e4a0b8b5b 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-multilib.eb @@ -21,7 +21,7 @@ sources = [ 'mpc-1.0.1.tar.gz', ] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] multilib = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb index cef0802601..dcddef3500 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb @@ -20,7 +20,7 @@ sources = [ 'mpc-1.0.1.tar.gz', ] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb index 955c1bb0d1..35b2688a1c 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb @@ -26,7 +26,7 @@ sources = [ 'isl-0.11.1.tar.bz2', ] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] withcloog = True withisl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.3.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.3.eb index c62aa710d1..b72eb0f106 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.3.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.3.eb @@ -20,7 +20,7 @@ sources = [ 'mpc-1.0.1.tar.gz', ] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG-multilib.eb index 849101f1a8..965fc73198 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG-multilib.eb @@ -31,7 +31,7 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] withcloog = True withisl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG.eb index 6c6607fa84..9a94681363 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG.eb @@ -31,7 +31,7 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] withcloog = True withisl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.0.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.0.eb index d05a279167..3f14a7a026 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.0.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.0.eb @@ -25,7 +25,7 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG-multilib.eb index 1c6798447b..77bc3a952c 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG-multilib.eb @@ -31,7 +31,7 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] withcloog = True withisl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG.eb index 287ec8d60b..c6f4f49acc 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG.eb @@ -31,7 +31,7 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] withcloog = True withisl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.1.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.1.eb index 2447e53ba3..c888d0b270 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.1.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.1.eb @@ -25,7 +25,7 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb index ed79986b4e..338efeb6d4 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb @@ -31,7 +31,7 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] withcloog = True withisl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb index defaf47449..82dd583d70 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb @@ -31,7 +31,7 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] withcloog = True withisl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb index 6761d69754..f1c7b80023 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb @@ -25,7 +25,7 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 -- GitLab From a827d6524350552bbf14d1b3a5cea326fee6d994 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 8 Jan 2015 09:25:03 +0100 Subject: [PATCH 0307/1217] Remove LTO from language list It's controlled by the withlto option (True by default). --- easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb | 2 +- easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb index df7997f1cb..ed620cefc6 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb @@ -26,7 +26,7 @@ sources = [ 'isl-0.11.1.tar.bz2', ] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] withcloog = True withisl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb index 7dfd911188..f700348861 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb @@ -26,7 +26,7 @@ sources = [ 'isl-0.11.1.tar.bz2', ] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] withcloog = True withisl = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb index 36662c73c5..fa49500c29 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb @@ -20,7 +20,7 @@ sources = [ 'mpc-1.0.1.tar.gz', ] -languages = ['c', 'c++', 'fortran', 'lto'] +languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 -- GitLab From e09ce064b4379bbce670b595dbd837378cde6a6b Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 8 Jan 2015 09:30:04 +0100 Subject: [PATCH 0308/1217] Updated libelf to working sanity check --- easybuild/easyconfigs/l/libelf/libelf-0.8.13.eb | 14 +++----------- 1 file changed, 3 insertions(+), 11 deletions(-) diff --git a/easybuild/easyconfigs/l/libelf/libelf-0.8.13.eb b/easybuild/easyconfigs/l/libelf/libelf-0.8.13.eb index 59c9c0bdc6..70fd760670 100644 --- a/easybuild/easyconfigs/l/libelf/libelf-0.8.13.eb +++ b/easybuild/easyconfigs/l/libelf/libelf-0.8.13.eb @@ -4,24 +4,16 @@ name = 'libelf' version = '0.8.13' homepage = 'http://www.mr511.de/software/english.html' -description = """TEMPLATE DESCRIPTION""" +description = """libelf is a free ELF object file access library""" toolchain = {'name': 'dummy', 'version': ''} -toolchainopts = {} -# For sources line to work correctly with --try-software-version, you MUST employ %s OR use a construct like SOURCE_TAR_GZ sources = [SOURCE_TAR_GZ] source_urls = ['http://www.mr511.de/software/'] -patches = [] - -dependencies = [] - -# The sanity test MUST be tuned before going production and submitting your contribution to upstream git repositories sanity_check_paths = { - 'files': [], - 'dirs': ["."] + 'files': ['lib/libelf.a', 'lib/libelf.so.0', 'include/libelf.h'], + 'dirs': ['lib/pkgconfig'] } -# You SHOULD change the following line; Kindly consult other easyconfigs for possible options moduleclass = 'devel' -- GitLab From 3f2058ee4d8218889c9d0039e0f40762a63f0585 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 8 Jan 2015 09:40:15 +0100 Subject: [PATCH 0309/1217] Add sanity check to libdwarf --- .../easyconfigs/l/libdwarf/libdwarf-20140805.eb | 13 ++++++++----- 1 file changed, 8 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb b/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb index caec041840..766259f641 100644 --- a/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb +++ b/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb @@ -8,7 +8,6 @@ description = """The DWARF Debugging Information Format is of interest to progra and debuggers (and anyone interested in reading or writing DWARF information))""" toolchain = {'name': 'dummy', 'version': ''} -toolchainopts = {} sources = [SOURCE_TAR_GZ] source_urls = ['http://www.prevanders.net'] @@ -16,17 +15,21 @@ source_urls = ['http://www.prevanders.net'] dependencies = [('libelf', '0.8.13')] with_configure = True -preconfigopts = "CFLAGS='-fPIC $CFLAGS' " +preconfigopts = 'CFLAGS="-fPIC $CFLAGS" ' configopts = "--enable-shared " # This is dirty but libdwarf cannot find it's own library in the build process... prebuildopts = ' LD_LIBRARY_PATH="../libdwarf:$LD_LIBRARY_PATH" ' -files_to_copy = [(["dwarfdump2/dwarfdump"], "bin"), (["libdwarf/libdwarf.a", "libdwarf/libdwarf.so"], "lib"), (["libdwarf/libdwarf.h", "libdwarf/dwarf.h"], "include")] +files_to_copy = [ + (["dwarfdump2/dwarfdump"], "bin"), + (["libdwarf/libdwarf.a", "libdwarf/libdwarf.so"], "lib"), + (["libdwarf/libdwarf.h", "libdwarf/dwarf.h"], "include"), +] sanity_check_paths = { - 'files': [], - 'dirs': ["."] + 'files': ["bin/dwarfdump", "lib/libdwarf.a", "lib/libdwarf.so", "include/libdwarf.h", "include/dwarf.h"], + 'dirs': ["bin", "lib"] } moduleclass = 'devel' -- GitLab From 143afe4fc516441b4dc67e9b7797f20334d9f62d Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 8 Jan 2015 09:42:05 +0100 Subject: [PATCH 0310/1217] Better sanity check for libdwarf --- easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb b/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb index 766259f641..802214fcf3 100644 --- a/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb +++ b/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb @@ -28,8 +28,8 @@ files_to_copy = [ ] sanity_check_paths = { - 'files': ["bin/dwarfdump", "lib/libdwarf.a", "lib/libdwarf.so", "include/libdwarf.h", "include/dwarf.h"], - 'dirs': ["bin", "lib"] + 'files': [], + 'dirs': ["bin", "lib", "include"] } moduleclass = 'devel' -- GitLab From ee03b2b4f43195b6301029299b2f67196b7b0b4c Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 9 Jan 2015 09:56:19 +0100 Subject: [PATCH 0311/1217] Use GCC toolchain for libelf and libdwarf --- easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb | 2 +- easybuild/easyconfigs/l/libelf/libelf-0.8.13.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb b/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb index 802214fcf3..c4e1b21a2a 100644 --- a/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb +++ b/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb @@ -7,7 +7,7 @@ homepage = 'http://www.prevanders.net/dwarf.html' description = """The DWARF Debugging Information Format is of interest to programmers working on compilers and debuggers (and anyone interested in reading or writing DWARF information))""" -toolchain = {'name': 'dummy', 'version': ''} +toolchain = {'name': 'GCC', 'version': '4.9.2'} sources = [SOURCE_TAR_GZ] source_urls = ['http://www.prevanders.net'] diff --git a/easybuild/easyconfigs/l/libelf/libelf-0.8.13.eb b/easybuild/easyconfigs/l/libelf/libelf-0.8.13.eb index 70fd760670..35722108c9 100644 --- a/easybuild/easyconfigs/l/libelf/libelf-0.8.13.eb +++ b/easybuild/easyconfigs/l/libelf/libelf-0.8.13.eb @@ -6,7 +6,7 @@ version = '0.8.13' homepage = 'http://www.mr511.de/software/english.html' description = """libelf is a free ELF object file access library""" -toolchain = {'name': 'dummy', 'version': ''} +toolchain = {'name': 'GCC', 'version': '4.9.2'} sources = [SOURCE_TAR_GZ] source_urls = ['http://www.mr511.de/software/'] -- GitLab From d019b3af17239eaa38a07d5e5ac1177d218a8187 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 9 Jan 2015 10:07:54 +0100 Subject: [PATCH 0312/1217] Rename file to GCC toolchain --- .../{libdwarf-20140805.eb => libdwarf-20140805-GCC-4.9.2.eb} | 0 .../l/libelf/{libelf-0.8.13.eb => libelf-0.8.13-GCC-4.9.2.eb} | 0 2 files changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/l/libdwarf/{libdwarf-20140805.eb => libdwarf-20140805-GCC-4.9.2.eb} (100%) rename easybuild/easyconfigs/l/libelf/{libelf-0.8.13.eb => libelf-0.8.13-GCC-4.9.2.eb} (100%) diff --git a/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb b/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805-GCC-4.9.2.eb similarity index 100% rename from easybuild/easyconfigs/l/libdwarf/libdwarf-20140805.eb rename to easybuild/easyconfigs/l/libdwarf/libdwarf-20140805-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/l/libelf/libelf-0.8.13.eb b/easybuild/easyconfigs/l/libelf/libelf-0.8.13-GCC-4.9.2.eb similarity index 100% rename from easybuild/easyconfigs/l/libelf/libelf-0.8.13.eb rename to easybuild/easyconfigs/l/libelf/libelf-0.8.13-GCC-4.9.2.eb -- GitLab From 131341fb654f67a73357093b9e5e4adc243f49c8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 9 Jan 2015 11:18:09 +0100 Subject: [PATCH 0313/1217] fix Libint dep in horton v1.2.1 easyconfigs --- .../h/horton/horton-1.2.1-goolf-1.4.10-Python-2.7.3.eb | 2 +- .../h/horton/horton-1.2.1-ictce-4.1.13-Python-2.7.3.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/h/horton/horton-1.2.1-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.2.1-goolf-1.4.10-Python-2.7.3.eb index a27558ac24..d1f6974e2a 100644 --- a/easybuild/easyconfigs/h/horton/horton-1.2.1-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/horton/horton-1.2.1-goolf-1.4.10-Python-2.7.3.eb @@ -23,7 +23,7 @@ dependencies = [ ('h5py', '2.2.1', versionsuffix), ('matplotlib', '1.2.1', versionsuffix), ('sympy', '0.7.2', versionsuffix), - ('libint2', '2.0.3'), + ('Libint', '2.0.3'), ('libxc', '2.0.3'), ] diff --git a/easybuild/easyconfigs/h/horton/horton-1.2.1-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/h/horton/horton-1.2.1-ictce-4.1.13-Python-2.7.3.eb index 57a24aa060..0379bf7556 100644 --- a/easybuild/easyconfigs/h/horton/horton-1.2.1-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/horton/horton-1.2.1-ictce-4.1.13-Python-2.7.3.eb @@ -23,7 +23,7 @@ dependencies = [ ('h5py', '2.2.1', versionsuffix), ('matplotlib', '1.2.1', versionsuffix), ('sympy', '0.7.2', versionsuffix), - ('libint2', '2.0.3'), + ('Libint', '2.0.3'), ('libxc', '2.0.3'), ] -- GitLab From 3ea9579f1e1f6eb740dc3b4f4aeedfd25f04dbc5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 9 Jan 2015 11:18:53 +0100 Subject: [PATCH 0314/1217] fix homepage in Libint v1 easyconfigs --- easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb | 2 +- easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb | 3 +-- easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb | 3 +-- easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb | 3 +-- 4 files changed, 4 insertions(+), 7 deletions(-) diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb index 34961f7588..b16d84b650 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb @@ -3,7 +3,7 @@ easyblock = 'ConfigureMake' name = 'Libint' version = '1.1.4' -homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +homepage = 'https://sourceforge.net/p/libint/' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb index 8118a5507e..5274a14b1b 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb @@ -3,11 +3,10 @@ easyblock = 'ConfigureMake' name = 'Libint' version = '1.1.4' -homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +homepage = 'https://sourceforge.net/p/libint/' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" - toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'opt': True, 'optarch': True} diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb index 663ec769c6..2add9d4356 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb @@ -3,11 +3,10 @@ easyblock = 'ConfigureMake' name = 'Libint' version = '1.1.4' -homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +homepage = 'https://sourceforge.net/p/libint/' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" - toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True, 'optarch': True} diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb index 30ddc9f19c..ec00bbac63 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb @@ -3,11 +3,10 @@ easyblock = 'ConfigureMake' name = 'Libint' version = '1.1.4' -homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +homepage = 'https://sourceforge.net/p/libint/' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" - toolchain = {'name': 'ictce', 'version': '5.5.0'} toolchainopts = {'opt': True, 'optarch': True} -- GitLab From 82a10031405c34792cc93ab5627df47e9d936f3b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 9 Jan 2015 11:19:08 +0100 Subject: [PATCH 0315/1217] fix easyblock line and homepage in Libint v2 easyconfigs --- easybuild/easyconfigs/l/Libint/Libint-2.0.3-goolf-1.4.10.eb | 4 +++- easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-4.1.13.eb | 4 +++- easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-5.5.0.eb | 4 +++- easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2014b.eb | 4 +++- 4 files changed, 12 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-goolf-1.4.10.eb index cd9044af15..bed13098d1 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-goolf-1.4.10.eb @@ -1,7 +1,9 @@ +easyblock = 'ConfigureMake' + name = 'Libint' version = '2.0.3' -homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +homepage = 'https://sourceforge.net/p/libint' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" diff --git a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-4.1.13.eb index d79c3c1677..de9be962dd 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-4.1.13.eb @@ -1,7 +1,9 @@ +easyblock = 'ConfigureMake' + name = 'Libint' version = '2.0.3' -homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +homepage = 'https://sourceforge.net/p/libint' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" diff --git a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-5.5.0.eb b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-5.5.0.eb index 74bb0c3a48..61abd35125 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-5.5.0.eb @@ -1,7 +1,9 @@ +easyblock = 'ConfigureMake' + name = 'Libint' version = '2.0.3' -homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +homepage = 'https://sourceforge.net/p/libint' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" diff --git a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2014b.eb b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2014b.eb index baba667d3c..21782713c2 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2014b.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2014b.eb @@ -1,7 +1,9 @@ +easyblock = 'ConfigureMake' + name = 'Libint' version = '2.0.3' -homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +homepage = 'https://sourceforge.net/p/libint' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" -- GitLab From da1e4c000e30b852029f1ca3b2a8625d7e4bda4d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 9 Jan 2015 11:35:50 +0100 Subject: [PATCH 0316/1217] fix Libint easyconfigs according to EB_Libint easyblock (revamped from EB_libint2) --- .../easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb | 6 ++---- .../l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb | 6 ++---- .../easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb | 6 ++---- .../easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb | 6 ++---- .../easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb | 6 ++---- easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb | 6 ++---- easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb | 6 ++---- .../easyconfigs/l/Libint/Libint-2.0.3-goolf-1.4.10.eb | 2 -- .../easyconfigs/l/Libint/Libint-2.0.3-ictce-4.1.13.eb | 2 -- easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-5.5.0.eb | 7 ------- easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2014b.eb | 7 ------- 11 files changed, 14 insertions(+), 46 deletions(-) diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb index c6bc75307e..b767fc8089 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'Libint' version = '1.1.4' @@ -8,12 +6,12 @@ description = """Libint library is used to evaluate the traditional (electron re matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" toolchain = {'name': 'gmacml', 'version': '1.7.0'} -toolchainopts = {'opt': True, 'optarch': True} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') -configopts = "--with-pic --enable-deriv --enable-r12" +configopts = "--enable-deriv --enable-r12" sanity_check_paths = { 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb index 223781541f..227b720824 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'Libint' version = '1.1.4' @@ -8,12 +6,12 @@ description = """Libint library is used to evaluate the traditional (electron re matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} -toolchainopts = {'opt': True, 'optarch': True} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') -configopts = "--with-pic --enable-deriv --enable-r12" +configopts = "--enable-deriv --enable-r12" sanity_check_paths = { 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb index 77d1fbe8e6..0be9a08b20 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'Libint' version = '1.1.4' @@ -7,12 +5,12 @@ homepage = 'https://sourceforge.net/p/libint/' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} -toolchainopts = {'opt': True, 'optarch': True} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') -configopts = "--with-pic --enable-deriv --enable-r12" +configopts = "--enable-deriv --enable-r12" sanity_check_paths = { 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb index b16d84b650..5f2d0e8f01 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'Libint' version = '1.1.4' @@ -8,12 +6,12 @@ description = """Libint library is used to evaluate the traditional (electron re matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} -toolchainopts = {'opt': True, 'optarch': True} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') -configopts = "--with-pic --enable-deriv --enable-r12" +configopts = "--enable-deriv --enable-r12" sanity_check_paths = { 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb index 5274a14b1b..f01c21c3c1 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'Libint' version = '1.1.4' @@ -8,12 +6,12 @@ description = """Libint library is used to evaluate the traditional (electron re matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" toolchain = {'name': 'ictce', 'version': '4.1.13'} -toolchainopts = {'opt': True, 'optarch': True} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') -configopts = "--with-pic --enable-deriv --enable-r12" +configopts = "--enable-deriv --enable-r12" sanity_check_paths = { 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb index 2add9d4356..a0892373de 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'Libint' version = '1.1.4' @@ -8,12 +6,12 @@ description = """Libint library is used to evaluate the traditional (electron re matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} -toolchainopts = {'opt': True, 'optarch': True} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') -configopts = "--with-pic --enable-deriv --enable-r12" +configopts = "--enable-deriv --enable-r12" sanity_check_paths = { 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb index ec00bbac63..3ab3e5d2a0 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'Libint' version = '1.1.4' @@ -8,12 +6,12 @@ description = """Libint library is used to evaluate the traditional (electron re matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" toolchain = {'name': 'ictce', 'version': '5.5.0'} -toolchainopts = {'opt': True, 'optarch': True} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') -configopts = "--with-pic --enable-shared --enable-deriv --enable-r12" +configopts = "--enable-deriv --enable-r12" sanity_check_paths = { 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + diff --git a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-goolf-1.4.10.eb index bed13098d1..b40eb92779 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-goolf-1.4.10.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'Libint' version = '2.0.3' diff --git a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-4.1.13.eb index de9be962dd..50b72b92d1 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-4.1.13.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'Libint' version = '2.0.3' diff --git a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-5.5.0.eb b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-5.5.0.eb index 61abd35125..dc184e8319 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-ictce-5.5.0.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'Libint' version = '2.0.3' @@ -13,9 +11,4 @@ toolchainopts = {'pic': True} sources = ['libint-%(version)s-stable.tgz'] source_urls = ['http://downloads.sourceforge.net/project/libint/libint-for-mpqc'] -sanity_check_paths = { - 'files': ['lib/libint2.a', 'lib/libint2.so', 'include/libint2/libint2.h'], - 'dirs': [], -} - moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2014b.eb b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2014b.eb index 21782713c2..78dc1f64e8 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2014b.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2014b.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'Libint' version = '2.0.3' @@ -13,9 +11,4 @@ toolchainopts = {'pic': True} sources = ['libint-%(version)s-stable.tgz'] source_urls = ['http://downloads.sourceforge.net/project/libint/libint-for-mpqc'] -sanity_check_paths = { - 'files': ['lib/libint2.a', 'lib/libint2.so', 'include/libint2/libint2.h'], - 'dirs': [], -} - moduleclass = 'chem' -- GitLab From 557ee1cd42ae430ba1fef9fd611f5468adcc5881 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 9 Jan 2015 12:03:32 +0100 Subject: [PATCH 0317/1217] include lib*.so in Libint v1 sanity check paths --- .../easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb | 7 ++++--- .../l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb | 7 ++++--- .../easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb | 7 ++++--- .../easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb | 7 ++++--- .../easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb | 7 ++++--- easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb | 7 ++++--- easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb | 7 ++++--- 7 files changed, 28 insertions(+), 21 deletions(-) diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb index b767fc8089..2c0f30db6f 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb @@ -14,9 +14,10 @@ source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'dow configopts = "--enable-deriv --enable-r12" sanity_check_paths = { - 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + - ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + - ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], 'dirs':[], } diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb index 227b720824..03c9b2dc7a 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb @@ -14,9 +14,10 @@ source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'dow configopts = "--enable-deriv --enable-r12" sanity_check_paths = { - 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + - ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + - ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], 'dirs':[], } diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb index 0be9a08b20..730a15d185 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb @@ -13,9 +13,10 @@ source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'dow configopts = "--enable-deriv --enable-r12" sanity_check_paths = { - 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + - ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + - ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], 'dirs':[], } diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb index 5f2d0e8f01..f3c3b23d4a 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb @@ -14,9 +14,10 @@ source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'dow configopts = "--enable-deriv --enable-r12" sanity_check_paths = { - 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + - ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + - ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], 'dirs':[], } diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb index f01c21c3c1..4e57ea2500 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb @@ -14,9 +14,10 @@ source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'dow configopts = "--enable-deriv --enable-r12" sanity_check_paths = { - 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + - ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + - ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], 'dirs':[], } diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb index a0892373de..785e595968 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb @@ -14,9 +14,10 @@ source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'dow configopts = "--enable-deriv --enable-r12" sanity_check_paths = { - 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + - ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + - ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], 'dirs':[], } diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb index 3ab3e5d2a0..401ec7cb9e 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb @@ -14,9 +14,10 @@ source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'dow configopts = "--enable-deriv --enable-r12" sanity_check_paths = { - 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + - ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + - ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], 'dirs':[], } -- GitLab From 28275d95f0c7d17b4c29adf5a35ec632dd8e338e Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Fri, 9 Jan 2015 15:42:22 +0100 Subject: [PATCH 0318/1217] fixed remarks --- .../easyconfigs/c/Cufflinks/Cufflinks-2.2.1-intel-2015a.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb | 2 ++ .../easyconfigs/s/SAMtools/SAMtools-0.1.19-intel-2015a.eb | 4 ++-- 3 files changed, 6 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.2.1-intel-2015a.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.2.1-intel-2015a.eb index 29554f44db..43da714323 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.2.1-intel-2015a.eb @@ -1,4 +1,3 @@ -easyblock = 'EB_Cufflinks' name = 'Cufflinks' version = '2.2.1' @@ -12,7 +11,8 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/'] dependencies = [ - ('Boost', '1.55.0', '-Python-2.7.8'), # issues with boost > 1.55, see https://github.com/cole-trapnell-lab/cufflinks/issues/3 + # issues with boost > 1.55, see https://github.com/cole-trapnell-lab/cufflinks/issues/3 + ('Boost', '1.55.0', '-Python-2.7.8'), ('SAMtools', '0.1.19'), ('Eigen', '3.2.3'), ('zlib', '1.2.8'), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb index f55821e7cf..57c70b100b 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb @@ -22,6 +22,8 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons ] # order is important! diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-intel-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-intel-2015a.eb index d053a9fc39..ff9ad1f2da 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-0.1.19-intel-2015a.eb @@ -2,7 +2,7 @@ name = 'SAMtools' version = '0.1.19' homepage = 'http://www.htslib.org/' -description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.""" toolchain = {'name': 'intel', 'version': '2015a'} @@ -11,7 +11,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_BZ2] source_urls = [('http://sourceforge.net/projects/samtools/files/%(namelower)s/%(version)s', 'download')] -patches = ['SAMtools-0.1.19_Makefile-ncurses.patch'] +patches = ['SAMtools-%(version)s_Makefile-ncurses.patch'] dependencies = [ ('ncurses', '5.9'), -- GitLab From 843fcbf0a9b63aff5810238fad16516b266c8752 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Fri, 9 Jan 2015 15:43:26 +0100 Subject: [PATCH 0319/1217] more remarks fixed --- easybuild/easyconfigs/e/Eigen/Eigen-3.2.3-intel-2015a.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.3-intel-2015a.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.3-intel-2015a.eb index 559c4eb64c..d9ce74d1cf 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.3-intel-2015a.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.3-intel-2015a.eb @@ -1,5 +1,3 @@ -easyblock = 'EB_Eigen' - name = 'Eigen' version = '3.2.3' -- GitLab From 5799dac9c2558ce2eeeeae388310a62874eca72b Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Fri, 9 Jan 2015 16:58:01 +0100 Subject: [PATCH 0320/1217] added six as dependency for dateutil --- easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb | 3 +++ 1 file changed, 3 insertions(+) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb index 57c70b100b..9d880d869f 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb @@ -65,6 +65,9 @@ exts_list = [ ('Cython', '0.20.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], -- GitLab From f43bba5fcffe96167ebd6b1b5d40771bbf776a1a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 9 Jan 2015 21:20:13 +0100 Subject: [PATCH 0321/1217] modify six version to 1.7.3, include ecdsa dep for paramiko --- easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb index 9d880d869f..4f8efafd39 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb @@ -65,7 +65,7 @@ exts_list = [ ('Cython', '0.20.2', { 'source_urls': ['http://www.cython.org/release/'], }), - ('six', '1.9.0', { + ('six', '1.7.3', { 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], }), ('dateutil', '2.2', { @@ -86,6 +86,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.14.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), -- GitLab From 13b9b1547211ef275a9ccb14caead710b8ba4bca Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 9 Jan 2015 22:08:43 +0100 Subject: [PATCH 0322/1217] add easyconfigs for R v3.1.2 with intel/2015a --- .../libjpeg-turbo-1.4.0-intel-2015a.eb | 24 ++ .../l/libpng/libpng-1.6.16-intel-2015a.eb | 19 ++ .../n/NASM/NASM-2.11.06-intel-2015a.eb | 31 ++ .../r/R/R-3.1.2-intel-2015a-bare.eb | 28 ++ .../easyconfigs/r/R/R-3.1.2-intel-2015a.eb | 314 ++++++++++++++++++ .../easyconfigs/r/R/Rmpi-0.6-5_impi5.patch | 12 + .../easyconfigs/r/R/geometry-0.3-5-icc.patch | 15 + 7 files changed, 443 insertions(+) create mode 100644 easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libpng/libpng-1.6.16-intel-2015a.eb create mode 100644 easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015a.eb create mode 100644 easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a-bare.eb create mode 100644 easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb create mode 100644 easybuild/easyconfigs/r/R/Rmpi-0.6-5_impi5.patch create mode 100644 easybuild/easyconfigs/r/R/geometry-0.3-5-icc.patch diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015a.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015a.eb new file mode 100644 index 0000000000..639a4e904b --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.4.0' + +homepage = 'http://sourceforge.net/libjpeg-turbo/' +description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG +compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('NASM', '2.11.06'), +] + +configopts = "--with-jpeg8" +runtest = "test" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.16-intel-2015a.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.16-intel-2015a.eb new file mode 100644 index 0000000000..23292508e7 --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.16-intel-2015a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.16' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015a.eb new file mode 100644 index 0000000000..058a25ffb3 --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-intel-2015a.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.11.06' + +homepage = 'http://www.nasm.us/' +description = """NASM: General-purpose x86 assembler""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a-bare.eb b/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a-bare.eb new file mode 100644 index 0000000000..0884c45575 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a-bare.eb @@ -0,0 +1,28 @@ +name = 'R' +version = '3.1.2' +versionsuffix = '-bare' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.16'), # for plotting in R + ('libjpeg-turbo', '1.4.0'), # for plottting in R + ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it +] + +exts_list = [] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb new file mode 100644 index 0000000000..6566de9534 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb @@ -0,0 +1,314 @@ +name = 'R' +version = '3.1.2' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.16'), # for plotting in R + ('libjpeg-turbo', '1.4.0'), # for plottting in R + ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it +] + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.r-project.org/src/contrib/', # current version of packages + 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': name_tmpl, +} +# Bioconductor packages have a different download url +bioconductor_options = { + 'source_urls': ['http://www.bioconductor.org/packages/3.0/bioc/src/contrib/'], + 'source_tmpl': name_tmpl, +} +# !! order of packages is important !! +# packages updated on January 8th 2015 +exts_list = [ + # default libraries, only here to sanity check their presence + 'base', + 'datasets', + 'graphics', + 'grDevices', + 'grid', + 'methods', + 'splines', + 'stats', + 'stats4', + 'tools', + 'utils', + # non-standard libraries, should be specified with fixed versions! + ('Rmpi', '0.6-5', dict(ext_options.items() + [('patches', ['Rmpi-0.6-5_impi5.patch'])])), + ('abind', '1.4-0', ext_options), + ('magic', '1.5-6', ext_options), + ('geometry', '0.3-4', dict(ext_options.items() + [('patches', ['geometry-0.3-4-icc.patch'])])), + ('bit', '1.1-12', ext_options), + ('filehash', '2.2-2', ext_options), + ('ff', '2.2-13', ext_options), + ('bnlearn', '3.6', ext_options), + ('bootstrap', '2014.4', ext_options), + ('combinat', '0.0-8', ext_options), + ('deal', '1.2-37', ext_options), + ('fdrtool', '1.2.13', ext_options), + ('formatR', '1.0', ext_options), + ('gtools', '3.4.1', ext_options), + ('gdata', '2.13.3', ext_options), + ('GSA', '1.03', ext_options), + ('highr', '0.4', ext_options), + ('infotheo', '1.2.0', ext_options), + ('lars', '1.2', ext_options), + ('lazy', '1.2-15', ext_options), + ('kernlab', '0.9-19', ext_options), + ('mime', '0.2', ext_options), + ('markdown', '0.7.4', ext_options), + ('mlbench', '2.1-1', ext_options), + ('NLP', '0.1-5', ext_options), + ('mclust', '4.4', ext_options), + ('RANN', '2.4.1', ext_options), + ('rmeta', '2.16', ext_options), + ('segmented', '0.5-1.0', ext_options), + ('som', '0.3-5', ext_options), + ('SuppDists', '1.1-9.1', ext_options), + ('stabledist', '0.6-6', ext_options), + ('survivalROC', '1.0.3', ext_options), + ('pspline', '1.0-16', ext_options), + ('timeDate', '3011.99', ext_options), + ('longmemo', '1.0-0', ext_options), + ('ADGofTest', '0.3', ext_options), + ('ade4', '1.6-2', ext_options), + ('AlgDesign', '1.1-7.3', ext_options), + ('base64enc', '0.1-2', ext_options), + ('BH', '1.55.0-3', ext_options), + ('brew', '1.0-6', ext_options), + ('Brobdingnag', '1.2-4', ext_options), + ('corpcor', '1.6.7', ext_options), + ('longitudinal', '1.1.10', ext_options), + ('checkmate', '1.5.1', ext_options), + ('cubature', '1.1-2', ext_options), + ('DEoptimR', '1.0-2', ext_options), + ('digest', '0.6.8', ext_options), + ('fastmatch', '1.0-4', ext_options), + ('ffbase', '0.11.3', ext_options), + ('iterators', '1.0.7', ext_options), + ('maps', '2.3-9', ext_options), + ('nnls', '1.4', ext_options), + ('sendmailR', '1.2-1', ext_options), + ('spam', '1.0-1', ext_options), + ('subplex', '1.1-4', ext_options), + ('stringr', '0.6.2', ext_options), + ('evaluate', '0.5.5', ext_options), + ('logspline', '2.1.5', ext_options), + ('ncbit', '2013.03.29', ext_options), + ('permute', '0.8-3', ext_options), + ('plotrix', '3.5-10', ext_options), + ('randomForest', '4.6-10', ext_options), + ('scatterplot3d', '0.3-35', ext_options), + ('SparseM', '1.6', ext_options), + ('tripack', '1.3-6', ext_options), + ('irace', '1.06', ext_options), + ('rJava', '0.9-6', ext_options), + ('lattice', '0.20-29', ext_options), + ('RColorBrewer', '1.1-2', ext_options), + ('latticeExtra', '0.6-26', ext_options), + ('Matrix', '1.1-4', ext_options), + ('png', '0.1-7', ext_options), + ('Rcpp', '0.11.3', ext_options), + ('RcppArmadillo', '0.4.600.0', ext_options), + ('plyr', '1.8.1', ext_options), + ('pROC', '1.7.3', ext_options), + ('quadprog', '1.5-5', ext_options), + ('BB', '2014.10-1', ext_options), + ('BBmisc', '1.8', ext_options), + ('fail', '1.2', ext_options), + ('rlecuyer', '0.3-3', ext_options), + ('snow', '0.3-13', ext_options), + ('MASS', '7.3-35', ext_options), + ('tree', '1.0-35', ext_options), + ('pls', '2.4-3', ext_options), + ('class', '7.3-11', ext_options), + ('e1071', '1.6-4', ext_options), + ('nnet', '7.3-8', ext_options), + ('car', '2.0-22', ext_options), + ('colorspace', '1.2-4', ext_options), + ('robustbase', '0.92-2', ext_options), + ('sp', '1.0-17', ext_options), + ('vcd', '1.3-2', ext_options), + ('snowfall', '1.84-6', ext_options), + ('rpart', '4.1-8', ext_options), + ('mice', '2.22', ext_options), + ('nlme', '3.1-118', ext_options), + ('urca', '1.2-8', ext_options), + ('fracdiff', '1.4-2', ext_options), + ('mgcv', '1.8-4', ext_options), + ('logistf', '1.21', ext_options), + ('akima', '0.5-11', ext_options), + ('bitops', '1.0-6', ext_options), + ('boot', '1.3-13', ext_options), + ('mixtools', '1.0.2', ext_options), + ('cluster', '1.15.3', ext_options), + ('gclus', '1.3.1', ext_options), + ('coda', '0.16-1', ext_options), + ('codetools', '0.2-9', ext_options), + ('foreach', '1.4.2', ext_options), + ('doMC', '1.3.3', ext_options), + ('DBI', '0.3.1', ext_options), + ('foreign', '0.8-62', ext_options), + ('survival', '2.37-7', ext_options), + ('gam', '1.09.1', ext_options), + ('gamlss.data', '4.2-7', ext_options), + ('gamlss.dist', '4.3-1', ext_options), + ('hwriter', '1.3.2', ext_options), + ('KernSmooth', '2.23-13', ext_options), + ('zoo', '1.7-11', ext_options), + ('xts', '0.9-7', ext_options), + ('TTR', '0.22-0', ext_options), + ('quantmod', '0.4-3', ext_options), + ('lmtest', '0.9-33', ext_options), + ('mnormt', '1.5-1', ext_options), + ('mvtnorm', '1.0-2', ext_options), + ('pcaPP', '1.9-60', ext_options), + ('numDeriv', '2012.9-1', ext_options), + ('lava', '1.3', ext_options), + ('prodlim', '1.5.1', ext_options), + ('pscl', '1.4.6', ext_options), + ('RSQLite', '1.0.0', ext_options), + ('BatchJobs', '1.5', ext_options), + ('sandwich', '2.3-2', ext_options), + ('sfsmisc', '1.0-27', ext_options), + ('spatial', '7.3-8', ext_options), + ('VGAM', '0.9-6', ext_options), + ('waveslim', '1.7.3', ext_options), + ('xtable', '1.7-4', ext_options), + ('profileModel', '0.5-9', ext_options), + ('brglm', '0.5-9', ext_options), + ('deSolve', '1.11', ext_options), + ('tseriesChaos', '0.1-13', ext_options), + ('tseries', '0.10-32', ext_options), + ('fastICA', '1.2-0', ext_options), + ('R.methodsS3', '1.6.1', ext_options), + ('R.oo', '1.18.0', ext_options), + ('cgdsr', '1.1.33', ext_options), + ('R.utils', '1.34.0', ext_options), + ('R.matlab', '3.1.1', ext_options), + ('BiocGenerics', '0.12.1', bioconductor_options), + ('Biobase', '2.26.0', bioconductor_options), + ('S4Vectors', '0.4.0', bioconductor_options), + ('IRanges', '2.0.1', bioconductor_options), + ('GenomeInfoDb', '1.2.4', bioconductor_options), + ('AnnotationDbi', '1.28.1', bioconductor_options), + ('XVector', '0.6.0', bioconductor_options), + ('zlibbioc', '1.12.0', bioconductor_options), + ('Biostrings', '2.34.1', bioconductor_options), + ('GenomicRanges', '1.18.4', bioconductor_options), + ('Rsamtools', '1.18.2', bioconductor_options), + ('BiocParallel', '1.0.0', bioconductor_options), + ('GenomicAlignments', '1.2.1', bioconductor_options), + ('ShortRead', '1.24.0', bioconductor_options), + ('graph', '1.44.1', bioconductor_options), + ('gbm', '2.1', ext_options), + ('dichromat', '2.0-0', ext_options), + ('Formula', '1.1-2', ext_options), + ('acepack', '1.3-3.3', ext_options), + ('Hmisc', '3.14-6', ext_options), + ('munsell', '0.4.2', ext_options), + ('labeling', '0.3', ext_options), + ('scales', '0.2.4', ext_options), + ('fastcluster', '1.1.15', ext_options), + ('reshape2', '1.4.1', ext_options), + ('chron', '2.3-45', ext_options), + ('data.table', '1.9.4', ext_options), + ('gtable', '0.1.2', ext_options), + ('proto', '0.3-10', ext_options), + ('ggplot2', '1.0.0', ext_options), + ('igraph', '0.7.1', ext_options), + ('GeneNet', '1.2.11', ext_options), + ('ape', '3.2', ext_options), + ('htmltools', '0.2.6', ext_options), + ('RJSONIO', '1.3-0', ext_options), + ('caTools', '1.17.1', ext_options), + ('gplots', '2.16.0', ext_options), + ('ROCR', '1.0-5', ext_options), + ('httpuv', '1.3.2', ext_options), + ('R6', '2.0.1', ext_options), + ('shiny', '0.10.2.2', ext_options), + ('adegenet', '1.4-2', ext_options), + ('phylobase', '0.6.8', ext_options), + ('adephylo', '1.1-6', ext_options), + ('animation', '2.3', ext_options), + ('bigmemory.sri', '0.1.3', ext_options), + ('bigmemory', '4.4.6', ext_options), + ('calibrate', '1.7.2', ext_options), + ('clusterGeneration', '1.3.1', ext_options), + ('raster', '2.3-12', ext_options), + ('dismo', '1.0-5', ext_options), + ('expm', '0.99-1.1', ext_options), + ('extrafontdb', '1.0', ext_options), + ('Rttf2pt1', '1.3.2', ext_options), + ('extrafont', '0.17', ext_options), + ('fields', '7.1', ext_options), + ('shapefiles', '0.7', ext_options), + ('fossil', '0.3.7', ext_options), + ('geiger', '2.0.3', ext_options), + ('glmnet', '1.9-8', ext_options), + ('gmp', '0.5-12', ext_options), + ('labdsv', '1.6-1', ext_options), + ('MatrixModels', '0.3-1.1', ext_options), + ('stabs', '0.5-0', ext_options), + ('mboost', '2.4-1', ext_options), + ('msm', '1.5', ext_options), + ('nor1mix', '1.2-0', ext_options), + ('np', '0.60-2', ext_options), + ('polynom', '1.3-8', ext_options), + ('partitions', '1.9-15', ext_options), + ('rgl', '0.95.1201', ext_options), + ('phangorn', '1.99-11', ext_options), + ('phytools', '0.4-31', ext_options), + ('vegan', '2.2-0', ext_options), + ('picante', '1.6-2', ext_options), + ('quantreg', '5.05', ext_options), + ('RcppEigen', '0.3.2.3.0', ext_options), + ('polspline', '1.1.9', ext_options), + ('TH.data', '1.0-6', ext_options), + ('multcomp', '1.3-8', ext_options), + ('rms', '4.2-1', ext_options), + ('RWekajars', '3.7.11-1', ext_options), + ('RWeka', '0.4-23', ext_options), + ('slam', '0.1-32', ext_options), + ('spacodiR', '0.13.0115', ext_options), + ('tm', '0.6', ext_options), + ('TraMineR', '1.8-8', ext_options), + ('untb', '1.7-2', ext_options), + ('chemometrics', '1.3.8', ext_options), + ('FNN', '1.1', ext_options), + #('forecast', '5.8', ext_options), # doesn't build +#/gpfs/scratch/projects/project_gpilot/vsc40023/software/icc/2015.1.133-GCC-4.9.2/composer_xe_2015.1.133/compiler/include/complex(220): error #308: member "std::complex::_M_value" (declared at line 1336 of "/gpfs/scratch/projects/project_gpilot/vsc40023/software/GCC/4.9.2/include/c++/4.9.2/complex") is inaccessible +# return ~__z._M_value; + #('Mcomp', '2.05', ext_options), + ('ipred', '0.9-3', ext_options), + ('knitr', '1.8', ext_options), + ('statmod', '1.4.20', ext_options), + ('miscTools', '0.6-16', ext_options), + ('maxLik', '1.2-4', ext_options), + ('mlogit', '0.2-4', ext_options), + ('getopt', '1.20.0', ext_options), + ('gsalib', '2.1', ext_options), + ('reshape', '0.8.5', ext_options), + ('optparse', '1.3.0', ext_options), + ('klaR', '0.6-12', ext_options), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/Rmpi-0.6-5_impi5.patch b/easybuild/easyconfigs/r/R/Rmpi-0.6-5_impi5.patch new file mode 100644 index 0000000000..236508841e --- /dev/null +++ b/easybuild/easyconfigs/r/R/Rmpi-0.6-5_impi5.patch @@ -0,0 +1,12 @@ +diff -ru Rmpi.orig/configure Rmpi/configure +--- Rmpi.orig/configure 2014-04-08 18:12:40.000000000 +0200 ++++ Rmpi/configure 2015-01-08 14:35:03.518018605 +0100 +@@ -3780,7 +3780,7 @@ + PKG_LIBS="-L${MPI_LIBPATH} -lmpich -lmpl -lopa ${MPI_LIBS}" + ;; + INTELMPI) +- PKG_LIBS="-Wl,-rpath,${MPI_LIBPATH} -L${MPI_LIBPATH} -lmpich -lmpigf -lmpigi ${MPI_LIBS}" ++ PKG_LIBS="-Wl,-rpath,${MPI_LIBPATH} -L${MPI_LIBPATH} -lmpi -lmpigf -lmpigi ${MPI_LIBS}" + ;; + CRAY) + PKG_LIBS="-L${MPI_LIBPATH} -lmpich_cray_default64 -lmpl -lopa ${MPI_LIBS}" diff --git a/easybuild/easyconfigs/r/R/geometry-0.3-5-icc.patch b/easybuild/easyconfigs/r/R/geometry-0.3-5-icc.patch new file mode 100644 index 0000000000..7e62596ef7 --- /dev/null +++ b/easybuild/easyconfigs/r/R/geometry-0.3-5-icc.patch @@ -0,0 +1,15 @@ +# Remove C++ code from a C header; was a workaround for older Intel compilers. +# It was for a macro that simply suppresses unused variable warnings +--- geometry-0.3.5/geometry.orig/src/qhull_a.h 2014-11-07 21:37:50.000000000 +0100 ++++ geometry-0.3.5/geometry/src/qhull_a.h 2015-01-08 13:02:17.000000000 +0100 +@@ -103,9 +103,7 @@ + # define QHULL_OS_WIN + #endif + #if defined(__INTEL_COMPILER) && !defined(QHULL_OS_WIN) +-template +-inline void qhullUnused(T &x) { (void)x; } +-# define QHULL_UNUSED(x) qhullUnused(x); ++# define QHULL_UNUSED(x) (x); + #else + # define QHULL_UNUSED(x) (void)x; + #endif -- GitLab From 3ea60c9a4beb2ad285b0c6a64a2e3fc0f0666f51 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 9 Jan 2015 22:29:33 +0100 Subject: [PATCH 0323/1217] add easyconfigs for CP2K v2.6.0 + deps with intel/2015a --- .../b/Bison/Bison-3.0.2-intel-2015a.eb | 22 +++++++++++ .../c/CP2K/CP2K-2.6.0-intel-2015a.eb | 38 +++++++++++++++++++ .../f/flex/flex-2.5.39-intel-2015a.eb | 14 +++++++ .../l/Libint/Libint-1.1.4-intel-2015a.eb | 24 ++++++++++++ .../l/libxc/libxc-2.2.1-intel-2015a.eb | 32 ++++++++++++++++ .../easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb | 23 +++++++++++ 6 files changed, 153 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2015a.eb create mode 100644 easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-2015a.eb create mode 100644 easybuild/easyconfigs/f/flex/flex-2.5.39-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2015a.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2015a.eb new file mode 100644 index 0000000000..c846b08785 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.2' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-2015a.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-2015a.eb new file mode 100644 index 0000000000..d44d1faa90 --- /dev/null +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-2015a.eb @@ -0,0 +1,38 @@ +name = 'CP2K' +version = '2.6.0' + +homepage = 'http://www.cp2k.org/' +description = """CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular + simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different + methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and + classical pair and many-body potentials. """ + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [SOURCEFORGE_SOURCE] + +patches = [ + 'CP2K-20131211-ifort-compiler-bug-fix.patch', + 'CP2K-2.4.0-fix_compile_date_lastsvn.patch', +] + +dependencies = [ + ('Libint', '1.1.4'), + ('libxc', '2.2.1'), +] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.2'), +] + +# don't use parallel make, results in compilation failure +# because Fortran module files aren't created before they are needed +parallel = 1 + +# regression test reports failures +ignore_regtest_fails = True + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-2015a.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-2015a.eb new file mode 100644 index 0000000000..859df83543 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-2015a.eb @@ -0,0 +1,14 @@ +name = 'flex' +version = '2.5.39' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2015a.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2015a.eb new file mode 100644 index 0000000000..2cf26e1b10 --- /dev/null +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2015a.eb @@ -0,0 +1,24 @@ +name = 'Libint' +version = '1.1.4' + +homepage = 'https://sourceforge.net/p/libint/' +description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body + matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') + +configopts = "--enable-deriv --enable-r12" + +sanity_check_paths = { + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], + 'dirs':[], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-2015a.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-2015a.eb new file mode 100644 index 0000000000..9ed080064b --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-2015a.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = '2.2.1' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'opt': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' + +# From the libxc mailing list +# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect +# a fully working testsuite soon (unless someone wants to volunteer to do +# it, of course ) In the meantime, unless the majority of the tests +# fail, your build should be fine. +#runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb new file mode 100644 index 0000000000..f842bdc90a --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2015a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From 797ea35173c8e4209389fad5c0d178402824eb4b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 9 Jan 2015 22:31:30 +0100 Subject: [PATCH 0324/1217] add easyconfig for Python v2.7.9 with intel/2015a --- .../o/OpenSSL/OpenSSL-1.0.1k-intel-2015a.eb | 24 +++++ .../p/Python/Python-2.7.9-intel-2015a.eb | 99 +++++++++++++++++++ 2 files changed, 123 insertions(+) create mode 100644 easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-intel-2015a.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-intel-2015a.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-intel-2015a.eb new file mode 100644 index 0000000000..3ffb667048 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-intel-2015a.eb @@ -0,0 +1,24 @@ +name = 'OpenSSL' +version = '1.0.1k' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +patches = [ + 'OpenSSL-1.0.1f_icc-fixes.patch', + 'OpenSSL-1.0.1i-fix_parallel_build-1.patch', +] + +dependencies = [('zlib', '1.2.8')] + +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb new file mode 100644 index 0000000000..d66c8a6594 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb @@ -0,0 +1,99 @@ +name = 'Python' +version = '2.7.9' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.1' +scipyversion = '0.14.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +# order is important! +# Version updated 08/JULY/2014 +exts_list = [ + ('setuptools', '11.3.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '6.0.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.4', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-1.8.0-mkl.patch', # % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['https://mpi4py.googlecode.com/files/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.21.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.2', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.15.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +moduleclass = 'lang' -- GitLab From e5c4aed146412e0769895a4cdbb0f13545588c2d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 9 Jan 2015 22:34:04 +0100 Subject: [PATCH 0325/1217] add missing easyconfigs for Java v1.8.0_25 --- easybuild/easyconfigs/j/Java/Java-1.8.0_25.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/j/Java/Java-1.8.0_25.eb diff --git a/easybuild/easyconfigs/j/Java/Java-1.8.0_25.eb b/easybuild/easyconfigs/j/Java/Java-1.8.0_25.eb new file mode 100644 index 0000000000..b2b319db51 --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.8.0_25.eb @@ -0,0 +1,15 @@ +name = 'Java' +version = '1.8.0_25' + +homepage = 'http://java.com/' +description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] + +moduleclass = 'lang' -- GitLab From 14ffda93809ed2c18483370286afbcda8633d04a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 9 Jan 2015 23:20:49 +0100 Subject: [PATCH 0326/1217] fix CP2K v2.6.0 patch --- .../c/CP2K/CP2K-2.6.0-ifort-compiler-bug-fix.patch | 12 ++++++++++++ .../easyconfigs/c/CP2K/CP2K-2.6.0-intel-2015a.eb | 2 +- 2 files changed, 13 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-ifort-compiler-bug-fix.patch diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-ifort-compiler-bug-fix.patch b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-ifort-compiler-bug-fix.patch new file mode 100644 index 0000000000..488cd1e631 --- /dev/null +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-ifort-compiler-bug-fix.patch @@ -0,0 +1,12 @@ +# workaround for ifort bug +# https://groups.google.com/forum/#!topic/cp2k/LorI2Z4pQgc +--- cp2k-2.6.0.orig/src/dbcsr/error/dbcsr_error_handling.F 2014-11-03 14:43:55.796144000 +0100 ++++ cp2k-2.6.0/src/dbcsr/error/dbcsr_error_handling.F 2015-01-09 12:40:08.052966729 +0100 +@@ -20,7 +20,6 @@ + !$ USE OMP_LIB + + IMPLICIT NONE +- PRIVATE + + ! procedures + PUBLIC :: dbcsr_error_set, dbcsr_error_stop diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-2015a.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-2015a.eb index d44d1faa90..e3cfc36850 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-2015a.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-2015a.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_BZ2] source_urls = [SOURCEFORGE_SOURCE] patches = [ - 'CP2K-20131211-ifort-compiler-bug-fix.patch', + 'CP2K-2.6.0-ifort-compiler-bug-fix.patch', 'CP2K-2.4.0-fix_compile_date_lastsvn.patch', ] -- GitLab From aed82c0f90428b52d544b1f1d611c21bfbe8e163 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 10 Jan 2015 15:39:13 +0100 Subject: [PATCH 0327/1217] style fixes in Libint v1.1.4 intel/2014b easyconfig --- .../l/Libint/Libint-1.1.4-intel-2014b.eb | 13 +++++++------ 1 file changed, 7 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb index 84d3d9f7a0..e84c9a7220 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb @@ -1,22 +1,23 @@ name = 'Libint' version = '1.1.4' -homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +homepage = 'https://sourceforge.net/p/libint/' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" toolchain = {'name': 'intel', 'version': '2014b'} -toolchainopts = {'opt': True, 'optarch': True} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') -configopts = "--with-pic --enable-shared --enable-deriv --enable-r12" +configopts = "--enable-deriv --enable-r12" sanity_check_paths = { - 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + - ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + - ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], 'dirs':[], } -- GitLab From 9c43f96b16714dec9f4ad2548ad82d2cc1bfbd26 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Sun, 11 Jan 2015 11:32:31 +0100 Subject: [PATCH 0328/1217] init gompi-1.6.10 w. OpenMPI/1.8.4-GCC-4.8.4 Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/g/gompi/gompi-1.6.20.eb | 25 ++++++++++++ .../h/hwloc/hwloc-1.10.0-GCC-4.8.4.eb | 23 +++++++++++ .../n/numactl/numactl-2.0.9-GCC-4.8.4.eb | 24 ++++++++++++ .../o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb | 38 +++++++++++++++++++ 4 files changed, 110 insertions(+) create mode 100644 easybuild/easyconfigs/g/gompi/gompi-1.6.20.eb create mode 100644 easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.8.4.eb create mode 100644 easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.4.eb create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb diff --git a/easybuild/easyconfigs/g/gompi/gompi-1.6.20.eb b/easybuild/easyconfigs/g/gompi/gompi-1.6.20.eb new file mode 100644 index 0000000000..a2dd8f90be --- /dev/null +++ b/easybuild/easyconfigs/g/gompi/gompi-1.6.20.eb @@ -0,0 +1,25 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = '1.6.20' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compname = 'GCC' +compver = '4.8.4' +comp = (compname, compver) + +mpilib = 'OpenMPI' +mpiver = '1.8.4' + +# compiler toolchain dependencies +dependencies = [ + comp, + (mpilib, mpiver, '', comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.8.4.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.8.4.eb new file mode 100644 index 0000000000..2d5251f89c --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.8.4.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = "1.10.0" + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +dependencies = [('numactl', '2.0.9')] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.4.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.4.eb new file mode 100644 index 0000000000..631c25771b --- /dev/null +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.4.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'numactl' +version = '2.0.9' + +homepage = 'http://oss.sgi.com/projects/libnuma/' +description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. +It does this by supplying a NUMA memory policy to the operating system before running your program. +The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" + +sources = [SOURCE_TAR_GZ] +source_urls = ["ftp://oss.sgi.com/www/projects/libnuma/download/"] + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +skipsteps = ['configure'] +installopts = "PREFIX=%(installdir)s libdir='${prefix}/lib'" + +sanity_check_paths = { + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb new file mode 100644 index 0000000000..bf74f56b70 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb @@ -0,0 +1,38 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = "1.8.4" + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +dependencies = [('hwloc', '1.10.0')] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +# needed for --with-openib +if OS_NAME in ['debian', 'ubuntu']: + osdependencies = ['libibverbs-dev'] +else: + # OK for OS_NAME == redhat, fedora, RHEL, SL, centos + osdependencies = ['libibverbs-devel'] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' -- GitLab From 4343d72938ddb933f53febcbf66ff1d9d687702f Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Sun, 11 Jan 2015 12:15:51 +0100 Subject: [PATCH 0329/1217] init fftw, openblas, scalapack w. gompi/1.6.20 Signed-off-by: Fotis Georgatos --- .../f/FFTW/FFTW-3.3.4-gompi-1.6.20.eb | 34 ++++++++++++ easybuild/easyconfigs/g/goolf/goolf-1.6.20.eb | 37 +++++++++++++ .../OpenBLAS-0.2.13-GCC-4.8.4-LAPACK-3.5.0.eb | 52 +++++++++++++++++++ ...mpi-1.6.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb | 29 +++++++++++ 4 files changed, 152 insertions(+) create mode 100644 easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.6.20.eb create mode 100644 easybuild/easyconfigs/g/goolf/goolf-1.6.20.eb create mode 100644 easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.8.4-LAPACK-3.5.0.eb create mode 100644 easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.6.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.6.20.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.6.20.eb new file mode 100644 index 0000000000..002bd8dda5 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.6.20.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'gompi', 'version': '1.6.20'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-quad-precision", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/goolf/goolf-1.6.20.eb b/easybuild/easyconfigs/g/goolf/goolf-1.6.20.eb new file mode 100644 index 0000000000..635ab13824 --- /dev/null +++ b/easybuild/easyconfigs/g/goolf/goolf-1.6.20.eb @@ -0,0 +1,37 @@ +easyblock = "Toolchain" + +name = 'goolf' +version = '1.6.20' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, including + OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp_name = 'GCC' +comp_version = '4.8.4' +comp = (comp_name, comp_version) + +blaslib = 'OpenBLAS' +blasver = '0.2.13' +blas = '%s-%s' % (blaslib, blasver) +blassuff = '-LAPACK-3.5.0' + +# toolchain used to build goolf dependencies +comp_mpi_tc_name = 'gompi' +comp_mpi_tc_ver = "%s" % version +comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) + +# compiler toolchain depencies +# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain +# because of toolchain preperation functions +dependencies = [ + ('GCC', '4.8.4'), + ('OpenMPI', '1.8.4', '', comp), # part of gompi-1.6.20 + (blaslib, blasver, blassuff, comp), + ('FFTW', '3.3.4', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.8.4-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.8.4-LAPACK-3.5.0.eb new file mode 100644 index 0000000000..c678bbcc6e --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.8.4-LAPACK-3.5.0.eb @@ -0,0 +1,52 @@ +easyblock = 'ConfigureMake' + +name = 'OpenBLAS' +version = '0.2.13' + +lapackver = '3.5.0' +versionsuffix = '-LAPACK-%s' % lapackver + +homepage = 'http://xianyi.github.com/OpenBLAS/' +description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +lapack_src = 'lapack-%s.tgz' % lapackver +large_src = 'large.tgz' +timing_src = 'timing.tgz' +sources = [ + 'v%(version)s.tar.gz', + lapack_src, + large_src, + timing_src, +] +source_urls = [ + # order matters, trying to download the LAPACK tarball from GitHub causes trouble + "http://www.netlib.org/lapack/", + "http://www.netlib.org/lapack/timing/", + "https://github.com/xianyi/OpenBLAS/archive/", +] + +patches = [ + (lapack_src, '.'), # copy LAPACK tarball to unpacked OpenBLAS dir + (large_src, '.'), + (timing_src, '.'), +] + +skipsteps = ['configure'] + +buildopts = 'BINARY=64 USE_THREAD=1 CC="$CC" FC="$F77" NO_AFFINITY=1' +installopts = "USE_THREAD=1 PREFIX=%(installdir)s" + +# extensive testing can be enabled by uncommenting the line below +#runtest = 'PATH=.:$PATH lapack-timing' + +sanity_check_paths = { + 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', + 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'numlib' + diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.6.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.6.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb new file mode 100644 index 0000000000..3931fb0ef3 --- /dev/null +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.6.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb @@ -0,0 +1,29 @@ +name = 'ScaLAPACK' +version = '2.0.2' + +homepage = 'http://www.netlib.org/scalapack/' +description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines + redesigned for distributed memory MIMD parallel computers.""" + +toolchain = {'name': 'gompi', 'version': '1.6.20'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = [SOURCELOWER_TGZ] + +comp_name = 'GCC' +comp_version = '4.8.4' +comp = (comp_name, comp_version) + +blaslib = 'OpenBLAS' +blasver = '0.2.13' +blassuff = '-LAPACK-3.5.0' + +versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) + +dependencies = [(blaslib, blasver, blassuff, comp)] + +## parallel build tends to fail, so disabling it +parallel = 1 + +moduleclass = 'numlib' -- GitLab From e28c188800d346499afe855af45cbdf29c66ed62 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Sun, 11 Jan 2015 12:23:24 +0100 Subject: [PATCH 0330/1217] add HPL/2.1 for goolf/1.6.20 Signed-off-by: Fotis Georgatos --- .../easyconfigs/h/HPL/HPL-2.1-goolf-1.6.20.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.6.20.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.6.20.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.6.20.eb new file mode 100644 index 0000000000..c245a1d304 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.6.20.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'goolf', 'version': '1.6.20'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' -- GitLab From 918b7b0325c18f74793babb548aaaf5e65d4a34d Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Sun, 11 Jan 2015 12:43:24 +0100 Subject: [PATCH 0331/1217] add moduleclass, wherever it was missing Signed-off-by: Fotis Georgatos --- .../g/Greenlet/Greenlet-0.4.2-ictce-5.5.0-Python-2.7.6.eb | 2 ++ easybuild/easyconfigs/h/HPL/HPL-2.1-gpsolf-2014.12.eb | 1 + .../h/h4toh5/h4toh5-2.2.2-linux-x86_64-static.eb | 2 ++ .../n/netaddr/netaddr-0.7.10-ictce-5.5.0-Python-2.7.6.eb | 5 +++-- .../n/netifaces/netifaces-0.8-ictce-5.5.0-Python-2.7.6.eb | 6 ++++-- .../p/ParMGridGen/ParMGridGen-1.0-goolf-1.4.10.eb | 1 + .../p/ParMGridGen/ParMGridGen-1.0-ictce-4.1.13.eb | 1 + .../s/SOAPdenovo2/SOAPdenovo2-r240-goolf-1.4.10.eb | 2 ++ .../s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.3.0.eb | 2 ++ .../s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.5.0.eb | 2 ++ 10 files changed, 20 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/g/Greenlet/Greenlet-0.4.2-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/g/Greenlet/Greenlet-0.4.2-ictce-5.5.0-Python-2.7.6.eb index ae5c1573ae..757c5d4553 100644 --- a/easybuild/easyconfigs/g/Greenlet/Greenlet-0.4.2-ictce-5.5.0-Python-2.7.6.eb +++ b/easybuild/easyconfigs/g/Greenlet/Greenlet-0.4.2-ictce-5.5.0-Python-2.7.6.eb @@ -31,3 +31,5 @@ sanity_check_paths = { 'lib/python%s/site-packages/greenlet.so' % pythonshortversion], 'dirs': [], } + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-gpsolf-2014.12.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-gpsolf-2014.12.eb index 5e3c46df7b..26abf7963c 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-gpsolf-2014.12.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-gpsolf-2014.12.eb @@ -14,3 +14,4 @@ source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] # fix Make dependencies, so parallel build also works patches = ['HPL_parallel-make.patch'] +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/h4toh5/h4toh5-2.2.2-linux-x86_64-static.eb b/easybuild/easyconfigs/h/h4toh5/h4toh5-2.2.2-linux-x86_64-static.eb index 9701129849..5f42f6f666 100644 --- a/easybuild/easyconfigs/h/h4toh5/h4toh5-2.2.2-linux-x86_64-static.eb +++ b/easybuild/easyconfigs/h/h4toh5/h4toh5-2.2.2-linux-x86_64-static.eb @@ -18,3 +18,5 @@ sanity_check_paths = { 'files': ['bin/%s' % x for x in ['h5toh4', 'h5toh4']], 'dirs': [], } + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netaddr/netaddr-0.7.10-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/n/netaddr/netaddr-0.7.10-ictce-5.5.0-Python-2.7.6.eb index dd70ce8320..172dead842 100644 --- a/easybuild/easyconfigs/n/netaddr/netaddr-0.7.10-ictce-5.5.0-Python-2.7.6.eb +++ b/easybuild/easyconfigs/n/netaddr/netaddr-0.7.10-ictce-5.5.0-Python-2.7.6.eb @@ -4,8 +4,7 @@ name = 'netaddr' version = '0.7.10' homepage = 'https://pypi.python.org/pypi/netaddr' -description = """Pythonic manipulation of IPv4, IPv6, CIDR, EUI and MAC network -addresses""" +description = """Pythonic manipulation of IPv4, IPv6, CIDR, EUI and MAC network addresses""" toolchain = {'name': 'ictce', 'version': '5.5.0'} @@ -22,3 +21,5 @@ dependencies = [ ] options = {'modulename': 'netaddr'} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/netifaces/netifaces-0.8-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/n/netifaces/netifaces-0.8-ictce-5.5.0-Python-2.7.6.eb index 3bbd0c1fca..7994c5fb6e 100644 --- a/easybuild/easyconfigs/n/netifaces/netifaces-0.8-ictce-5.5.0-Python-2.7.6.eb +++ b/easybuild/easyconfigs/n/netifaces/netifaces-0.8-ictce-5.5.0-Python-2.7.6.eb @@ -5,8 +5,8 @@ version = '0.8' homepage = 'https://pypi.python.org/pypi/netifaces' description = """netifaces provides a (hopefully portable-ish) way for Python -programmers to get access to a list of the network interfaces on the local -machine, and to obtain the addresses of those network interfaces.""" + programmers to get access to a list of the network interfaces on the local + machine, and to obtain the addresses of those network interfaces.""" toolchain = {'name': 'ictce', 'version': '5.5.0'} @@ -23,3 +23,5 @@ dependencies = [ ] options = {'modulename': 'netifaces'} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-goolf-1.4.10.eb index 95cdc88072..f34ede0c95 100644 --- a/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-goolf-1.4.10.eb @@ -24,3 +24,4 @@ files_to_copy = [ (['libmgrid.a', 'libparmgrid.a'], 'lib'), ] +moduleclass = 'math' diff --git a/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-ictce-4.1.13.eb b/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-ictce-4.1.13.eb index 345412c3a4..9e0d4404c2 100644 --- a/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/ParMGridGen/ParMGridGen-1.0-ictce-4.1.13.eb @@ -24,3 +24,4 @@ files_to_copy = [ (['libmgrid.a', 'libparmgrid.a'], 'lib'), ] +moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-goolf-1.4.10.eb index f630ed6839..9a31af40cd 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-goolf-1.4.10.eb @@ -36,3 +36,5 @@ sanity_check_paths = { 'files': ['bin/SOAPdenovo-63mer', 'bin/SOAPdenovo-127mer'], 'dirs': [], } + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.3.0.eb index 05c5b5cfbb..98fc2a7d48 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.3.0.eb @@ -36,3 +36,5 @@ sanity_check_paths = { 'files': ['bin/SOAPdenovo-63mer', 'bin/SOAPdenovo-127mer'], 'dirs': [], } + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.5.0.eb index 897f658237..4f0d8353ab 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.5.0.eb @@ -36,3 +36,5 @@ sanity_check_paths = { 'files': ['bin/SOAPdenovo-63mer', 'bin/SOAPdenovo-127mer'], 'dirs': [], } + +moduleclass = 'bio' -- GitLab From 7337ef9ad5fba8a585dc2132daa09a843120c15f Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Sun, 11 Jan 2015 12:50:58 +0100 Subject: [PATCH 0332/1217] fix header typos Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb | 2 +- easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb | 4 ++-- easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb | 4 ++-- easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb | 4 ++-- easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb | 4 ++-- easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb | 4 ++-- 7 files changed, 12 insertions(+), 12 deletions(-) diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb index f8d2902688..d78acf92e2 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.4.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2014 +# Copyright:: Copyright 2014, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb index f26c22af1f..e0ea8f21ce 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.10.0-goolf-1.6.10.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2014 +# Copyright:: Copyright 2014, NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb index ebb147c47f..45906bfb00 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.4.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2014 -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2014, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb index 3d8806025a..289cbf479a 100644 --- a/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb +++ b/easybuild/easyconfigs/c/Chapel/Chapel-1.9.0-goolf-1.6.10.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2014 -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2014, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ ## diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb index a50c05d1d7..7112a25a66 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.6-intel-2014b.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb index 6dcd19de43..a1c8f2c16c 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb index c3c1e8454e..a7bfe7aa51 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine -# Authors:: Robert Schmidt ,Cedric Laczny , Fotis Georgatos +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos # License:: MIT/GPL # $Id$ # -- GitLab From de1a7e23f0a63109827b9f0fe3bcad305bcc5b34 Mon Sep 17 00:00:00 2001 From: Benjamin Roberts Date: Mon, 12 Jan 2015 13:45:30 +1300 Subject: [PATCH 0333/1217] Supplememtary easyconfigs for GSL --- .../easyconfigs/g/GSL/GSL-1.15-goolf-1.5.14.eb | 18 ++++++++++++++++++ .../easyconfigs/g/GSL/GSL-1.16-goolf-1.5.14.eb | 18 ++++++++++++++++++ .../easyconfigs/g/GSL/GSL-1.16-ictce-5.4.0.eb | 18 ++++++++++++++++++ 3 files changed, 54 insertions(+) create mode 100644 easybuild/easyconfigs/g/GSL/GSL-1.15-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.4.0.eb diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.15-goolf-1.5.14.eb b/easybuild/easyconfigs/g/GSL/GSL-1.15-goolf-1.5.14.eb new file mode 100644 index 0000000000..d19efed940 --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-1.15-goolf-1.5.14.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '1.15' + +homepage = 'http://www.gnu.org/software/gsl/' +description = """The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. +The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.5.14.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.5.14.eb new file mode 100644 index 0000000000..4b5f9bf2c3 --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.5.14.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '1.16' + +homepage = 'http://www.gnu.org/software/gsl/' +description = """The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. +The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} + +source_urls = ['http://ftpmirror.gnu.org/gsl/'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.4.0.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.4.0.eb new file mode 100644 index 0000000000..9d1699e64d --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.4.0.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '1.16' + +homepage = 'http://www.gnu.org/software/gsl/' +description = """The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. + The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.""" + +toolchain = {'name': 'ictce', 'version': '5.4.0'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +moduleclass = 'numlib' -- GitLab From 6e2bc3be75dc2011c3623c5991d17e40e9af1224 Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 13 Jan 2015 15:56:03 +0100 Subject: [PATCH 0334/1217] Updated OpenSSL to latests release in intel/2015a --- .../o/OpenSSL/OpenSSL-1.0.1k-intel-2015a.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-intel-2015a.eb diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-intel-2015a.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-intel-2015a.eb new file mode 100644 index 0000000000..3ffb667048 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-intel-2015a.eb @@ -0,0 +1,24 @@ +name = 'OpenSSL' +version = '1.0.1k' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +patches = [ + 'OpenSSL-1.0.1f_icc-fixes.patch', + 'OpenSSL-1.0.1i-fix_parallel_build-1.patch', +] + +dependencies = [('zlib', '1.2.8')] + +runtest = 'test' + +moduleclass = 'system' -- GitLab From 036cebf2cda39198ed33da1c7492bb56b137a3da Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 13 Jan 2015 15:56:43 +0100 Subject: [PATCH 0335/1217] Updated Python and its extensions to latest version in intel/2015a --- .../p/Python/Python-2.7.9-intel-2015a.eb | 99 +++++++++++++++++++ 1 file changed, 99 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb new file mode 100644 index 0000000000..75d66eb6d9 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb @@ -0,0 +1,99 @@ +name = 'Python' +version = '2.7.9' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.1' +scipyversion = '0.14.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +# order is important! +# Version updated 08/JULY/2014 +exts_list = [ + ('setuptools', '11.3.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '6.0.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.4', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-1.8.0-mkl.patch', # % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['https://mpi4py.googlecode.com/files/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.21.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.0', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.15.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +moduleclass = 'lang' -- GitLab From 997de87d385aef72063032650ee2e61c62223391 Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 14 Jan 2015 16:18:20 +0100 Subject: [PATCH 0336/1217] Added Szip easyconfig for intel --- .../s/Szip/Szip-2.1-intel-2015a.eb | 23 +++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015a.eb diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015a.eb new file mode 100644 index 0000000000..989df56176 --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.so"] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' -- GitLab From aee5bf2b250a93db0aa0b4d15bcee999f599f26e Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 14 Jan 2015 16:26:07 +0100 Subject: [PATCH 0337/1217] Added HDF5 intel easyconfig for non-parallel I/O --- .../h/HDF5/HDF5-1.8.14-intel-2015a.eb | 27 +++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a.eb diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a.eb new file mode 100644 index 0000000000..e065e66761 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a.eb @@ -0,0 +1,27 @@ +name = 'HDF5' +version = '1.8.14' +versionsuffix = '-serial' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5-1.8.13_configure_intel.patch', + 'configure_libtool.patch', +] + +buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' + +dependencies = [ + ('zlib', '1.2.8'), + ('Szip', '2.1'), +] + +moduleclass = 'data' -- GitLab From 9ea9a2690092ec55f1630e1ee5d5db9c1920f0ce Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 14 Jan 2015 16:46:47 +0100 Subject: [PATCH 0338/1217] Added parallel I/O version of HDF5 for intel --- .../h/HDF5/HDF5-1.8.14-intel-2015a-gpfs.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-gpfs.eb diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-gpfs.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-gpfs.eb new file mode 100644 index 0000000000..04695ce84a --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-gpfs.eb @@ -0,0 +1,28 @@ +name = 'HDF5' +version = '1.8.14' +versionsuffix = '-gpfs' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} +configopts = "--enable-gpfs" + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5-1.8.13_configure_intel.patch', + 'configure_libtool.patch', +] + +buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' + +dependencies = [ + ('zlib', '1.2.8'), + ('Szip', '2.1'), +] + +moduleclass = 'data' -- GitLab From d05fecc7fb352ee356b3cdcfa2b4be1a774bfaeb Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 14 Jan 2015 16:48:12 +0100 Subject: [PATCH 0339/1217] Renamed EB file for non-parallel I/O for clarity --- ...F5-1.8.14-intel-2015a.eb => HDF5-1.8.14-intel-2015a-eerial.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/h/HDF5/{HDF5-1.8.14-intel-2015a.eb => HDF5-1.8.14-intel-2015a-eerial.eb} (100%) diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-eerial.eb similarity index 100% rename from easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a.eb rename to easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-eerial.eb -- GitLab From c681d202676c50fdaa5bfc50a43339aa611d0928 Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 14 Jan 2015 17:13:47 +0100 Subject: [PATCH 0340/1217] updated easyconfigs for autotools --- .../a/Autoconf/Autoconf-2.69-GCC-4.9.2.eb | 26 +++++++++++++++ .../a/Automake/Automake-1.15-GCC-4.9.2.eb | 33 +++++++++++++++++++ .../easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb | 23 +++++++++++++ 3 files changed, 82 insertions(+) create mode 100644 easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.2.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.2.eb new file mode 100644 index 0000000000..51f5dfe227 --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.2.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can adapt the + packages to many kinds of UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template file that lists the + operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", + "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb new file mode 100644 index 0000000000..b24d010c0a --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.2.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb new file mode 100644 index 0000000000..372d1c346d --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From 67bd17d7ee43bc9f5426970977648cec468ff4e2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 15 Jan 2015 10:37:31 +0100 Subject: [PATCH 0341/1217] fix remark location of osdependencies, make sure both OpenSSL and openssl-dev osdeps are included in all Python easyconfigs --- easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb | 4 ++-- .../easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb | 4 ++-- .../easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb | 4 ++-- .../easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb | 4 ++-- .../p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb | 5 +++-- easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb | 5 +++-- easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb | 4 ++-- .../easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb | 4 ++-- easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb | 5 +++-- 37 files changed, 77 insertions(+), 74 deletions(-) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb index 7a975980fe..ff29af2bc6 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb index c0a121ef71..2f60efe4e8 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -78,6 +80,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb index 2e5b1c3cc2..b4f548c18b 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb index 3cc5940708..9d2c604f4f 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -78,6 +80,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb index f8a7666f78..c252a8b3de 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb index 262c91f061..4884b52b0d 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb index c22d902c71..5099772f2d 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb index 4e3149189f..9128d74b49 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb index 0f28917f5c..d938b3fc62 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb index 678cacbe75..0c4da5c164 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb index 11ffa16a41..a68d931926 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb @@ -24,6 +24,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb index 97c9a23292..ee7ccd4bb7 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb @@ -24,6 +24,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb index 79e4bbcd67..a3d24d3fdc 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -78,6 +80,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb index 1ccc5c12ca..f3bd0f8344 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -78,6 +80,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb index 3a167c9f92..222cd4f42c 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb @@ -24,6 +24,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb index 1ad8450e3d..7a6d81adf0 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb @@ -25,6 +25,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -84,6 +86,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb index df55e62340..f158ddf7ab 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -78,6 +80,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb index 968045a415..9143f9dad2 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb index 464a9c0441..04a5632f9c 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb @@ -25,6 +25,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -83,6 +85,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb index 54b6d1a65f..ec4553c1d9 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb @@ -25,6 +25,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -81,6 +83,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb index d513f80632..08888d2dbf 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb @@ -25,6 +25,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -81,6 +83,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb index 4a7605ab2c..65a60725ea 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb @@ -26,6 +26,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '0.6c11', { @@ -85,6 +87,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb index 44158cd159..412a7bf0bb 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '1.4.2', { @@ -80,6 +82,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb index 6a17a47968..19c362a204 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb @@ -25,6 +25,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '1.4.2', { @@ -83,6 +85,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb index af561484ae..2ff03f4dc6 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb @@ -25,6 +25,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '1.4.2', { @@ -83,6 +85,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb index 6594db177f..3f5392e4f4 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '5.4.1', { @@ -87,6 +89,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb index dd7a8d8f1e..55934a4956 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb @@ -25,8 +25,11 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! # Version updated 08/JULY/2014 exts_list = [ @@ -92,6 +95,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb index 64f8e11174..a759b23e31 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb @@ -22,8 +22,11 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! # Version updated 08/JULY/2014 exts_list = [ @@ -89,6 +92,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb index d66c8a6594..b23a1d3ab2 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb @@ -23,6 +23,8 @@ dependencies = [ # nice to have an up to date openssl for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! # Version updated 08/JULY/2014 exts_list = [ @@ -94,6 +96,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb index 236304395e..9073a17f5a 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('distribute', '0.6.26', { @@ -64,6 +66,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb index fbb78f9e84..3821b8b221 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('distribute', '0.6.26', { @@ -64,6 +66,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb index c6cedb61ef..c38ebb9c2d 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb @@ -24,6 +24,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('distribute', '0.6.26', { @@ -66,6 +68,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb index 38875e2a4f..316d7e01f3 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('distribute', '0.6.26', { @@ -64,6 +66,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb index 73c3832a10..ccb66beda5 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb @@ -22,6 +22,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '1.1.1', { @@ -42,6 +44,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb index 8cd8056d73..b8c6c3ff36 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb @@ -24,6 +24,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '1.1.1', { @@ -44,6 +46,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb index 27461c4521..9f533cb4ea 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb @@ -24,6 +24,8 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! exts_list = [ ('setuptools', '1.1.1', { @@ -44,6 +46,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb index df2e52ef20..2383e63c46 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb @@ -22,8 +22,11 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! # Version updated 08/JULY/2014 exts_list = [ @@ -91,6 +94,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' -- GitLab From 4c97abc8c23b0bf7523d2bdb19d35a82215ec02d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 15 Jan 2015 10:38:47 +0100 Subject: [PATCH 0342/1217] include bare version of Python/2.7.9 with intel/2015a --- .../p/Python/Python-2.7.9-intel-2015a-bare.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb new file mode 100644 index 0000000000..d2a6be35eb --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb @@ -0,0 +1,29 @@ +name = 'Python' +version = '2.7.9' +versionsuffix = '-bare' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# bare installation: no extensions included +exts_list = [] + +moduleclass = 'lang' -- GitLab From aa85ab45bb298a52fe6f62e1110cfaa293377212 Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 15 Jan 2015 13:27:43 +0100 Subject: [PATCH 0343/1217] Moved configopts as requested --- easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-gpfs.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-gpfs.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-gpfs.eb index 04695ce84a..081c94297d 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-gpfs.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-gpfs.eb @@ -8,7 +8,6 @@ description = """HDF5 is a unique technology suite that makes possible the manag toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -configopts = "--enable-gpfs" source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] @@ -18,6 +17,7 @@ patches = [ 'configure_libtool.patch', ] +configopts = "--enable-gpfs" buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' dependencies = [ -- GitLab From b31a52b422a69b297c758d45d5960eea2630569b Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 15 Jan 2015 13:30:24 +0100 Subject: [PATCH 0344/1217] Fixed bypo in file name --- ...14-intel-2015a-eerial.eb => HDF5-1.8.14-intel-2015a-serial.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/h/HDF5/{HDF5-1.8.14-intel-2015a-eerial.eb => HDF5-1.8.14-intel-2015a-serial.eb} (100%) diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-eerial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb similarity index 100% rename from easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-eerial.eb rename to easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb -- GitLab From d9f9be566187f972b87b0628833c7cfdf7ccefee Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 15 Jan 2015 15:21:55 +0100 Subject: [PATCH 0345/1217] Removed unnecessary buildopts --- easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb index e065e66761..0db92859a2 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.14-intel-2015a-serial.eb @@ -17,8 +17,6 @@ patches = [ 'configure_libtool.patch', ] -buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' - dependencies = [ ('zlib', '1.2.8'), ('Szip', '2.1'), -- GitLab From 208b19b516eef1c782792c2352cad660bb6a29f1 Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 15 Jan 2015 15:49:58 +0100 Subject: [PATCH 0346/1217] Added GCC version of ncurses --- .../n/ncurses/ncurses-5.9-GCC-4.9.2.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.9.2.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.9.2.eb new file mode 100644 index 0000000000..78b7618284 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.9.2.eb @@ -0,0 +1,15 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' -- GitLab From e41ce4c1453aca73f2444a2da51c458fbf555681 Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 15 Jan 2015 15:57:53 +0100 Subject: [PATCH 0347/1217] Added GCC CMake --- .../c/CMake/CMake-3.1.0-GCC-4.9.2.eb | 22 +++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.1.0-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.1.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/CMake/CMake-3.1.0-GCC-4.9.2.eb new file mode 100644 index 0000000000..ff876ee8db --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.1.0-GCC-4.9.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.1.0' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From 81e58819b7e8b67ad14afae3a2347a277d1161f9 Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 15 Jan 2015 16:27:48 +0100 Subject: [PATCH 0348/1217] Added GCC Bash --- .../easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb b/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb new file mode 100644 index 0000000000..5a4362dd71 --- /dev/null +++ b/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit +# Authors:: Valentin Plugaru +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html +## + +name = 'Bash' +version = '4.3' + +homepage = 'http://www.gnu.org/software/bash' +description = """Bash is an sh-compatible command language interpreter that executes commands + read from the standard input or from a file. Bash also incorporates useful features from the + Korn and C shells (ksh and csh).""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://ftp.gnu.org/gnu/%(namelower)s'] + +sanity_check_paths = { + 'files': ["bin/bash"], + 'dirs': [] +} + +moduleclass = 'tools' -- GitLab From b0c15b015c1f642882a1c7d15653b0a1bc53d4a9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 15 Jan 2015 22:17:43 +0100 Subject: [PATCH 0349/1217] add easyconfig for Perl v5.20.1 (bare) with intel/2015a --- .../p/Perl/Perl-5.20.1-intel-2015a-bare.eb | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 easybuild/easyconfigs/p/Perl/Perl-5.20.1-intel-2015a-bare.eb diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.1-intel-2015a-bare.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.1-intel-2015a-bare.eb new file mode 100644 index 0000000000..fcafa63e1e --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.1-intel-2015a-bare.eb @@ -0,0 +1,17 @@ +name = 'Perl' +version = '5.20.1' +versionsuffix = '-bare' + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +# bare, no extensions +exts_list = [] + +moduleclass = 'lang' -- GitLab From d4e97d3d9f8ff5a016ab25ff568000a9f6d73e37 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 15 Jan 2015 22:40:12 +0100 Subject: [PATCH 0350/1217] fix mpi4py source_urls in Python easyconfigs --- easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb | 2 +- .../easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb | 2 +- .../easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb | 2 +- .../easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb | 2 +- .../easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb | 2 +- 35 files changed, 35 insertions(+), 35 deletions(-) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb index ff29af2bc6..09f3055b4f 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb @@ -45,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb index 2f60efe4e8..42193d47f3 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb @@ -43,7 +43,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb index b4f548c18b..1afb913fc7 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb @@ -45,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb index 9d2c604f4f..e06519fa69 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb @@ -43,7 +43,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb index c252a8b3de..d2a397a75d 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb @@ -45,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb index 4884b52b0d..911d601c84 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb @@ -45,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb index 5099772f2d..fc55e54136 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb @@ -45,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb index 9128d74b49..ddb8cca034 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb @@ -45,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb index d938b3fc62..30918d38a9 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb @@ -45,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb index 0c4da5c164..4134226fe7 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb @@ -45,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb index a68d931926..3674e8503a 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb @@ -45,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb index ee7ccd4bb7..c79f20595e 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb @@ -45,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb index a3d24d3fdc..35b2b5b200 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb @@ -43,7 +43,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb index f3bd0f8344..7aebaedcf4 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb @@ -43,7 +43,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb index 222cd4f42c..664ee1f1a8 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb @@ -45,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb index 7a6d81adf0..bc49ef2fca 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb @@ -49,7 +49,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb index f158ddf7ab..0c368fb252 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb @@ -43,7 +43,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb index 9143f9dad2..9bb670b9f9 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb @@ -45,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb index 04a5632f9c..50f7775759 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb index ec4553c1d9..2ddde79dbd 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb @@ -46,7 +46,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb index 08888d2dbf..f1a9ed5672 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb @@ -46,7 +46,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb index 65a60725ea..1fba318bda 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb @@ -50,7 +50,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb index 412a7bf0bb..f9fa5f9c80 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb @@ -45,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3.1', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb index 19c362a204..d5ea67a210 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3.1', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb index 2ff03f4dc6..ad9bec4d24 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3.1', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb index 3f5392e4f4..727caedb4d 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb @@ -45,7 +45,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3.1', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb index 55934a4956..7c555315ab 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb @@ -55,7 +55,7 @@ exts_list = [ 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb index a759b23e31..606015815c 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb @@ -52,7 +52,7 @@ exts_list = [ 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb index 4f8efafd39..8f5509ad1f 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb @@ -51,7 +51,7 @@ exts_list = [ 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb index a53f2176a2..f807c51fcc 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb @@ -50,7 +50,7 @@ exts_list = [ 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb index 9073a17f5a..5908968a8a 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb @@ -46,7 +46,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb index 3821b8b221..f3672941f6 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb @@ -46,7 +46,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb index c38ebb9c2d..46621b251d 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb index 316d7e01f3..202bdb8ade 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb @@ -46,7 +46,7 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('mpi4py', '1.3', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb index 2383e63c46..aa223ede51 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb @@ -52,7 +52,7 @@ exts_list = [ 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], -- GitLab From 90d0b2209cdf8d08df47074e7f04a538c301ca70 Mon Sep 17 00:00:00 2001 From: Benjamin Roberts Date: Fri, 16 Jan 2015 13:58:27 +1300 Subject: [PATCH 0351/1217] Implemented GNU_SOURCE macro --- easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.5.14.eb | 2 +- easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-1.3.12.eb | 2 +- easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-2.6.10.eb | 2 +- easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-6.2.5.eb | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.4.10.eb index e84b9ab73d..108a2f3dc5 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.4.10.eb @@ -10,7 +10,7 @@ The library provides a wide range of mathematical routines such as random number toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} -source_urls = ['http://ftpmirror.gnu.org/gsl/'] +source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.5.14.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.5.14.eb index 4b5f9bf2c3..ffcd9e4804 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolf-1.5.14.eb @@ -10,7 +10,7 @@ The library provides a wide range of mathematical routines such as random number toolchain = {'name': 'goolf', 'version': '1.5.14'} toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} -source_urls = ['http://ftpmirror.gnu.org/gsl/'] +source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-1.3.12.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-1.3.12.eb index e8786d7d1a..875d7306f5 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-1.3.12.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-1.3.12.eb @@ -10,7 +10,7 @@ The library provides a wide range of mathematical routines such as random number toolchain = {'name': 'goolfc', 'version': '1.3.12'} toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} -source_urls = ['http://ftpmirror.gnu.org/gsl/'] +source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-2.6.10.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-2.6.10.eb index cf7dda1aff..9d9ca82812 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-2.6.10.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-goolfc-2.6.10.eb @@ -10,7 +10,7 @@ The library provides a wide range of mathematical routines such as random number toolchain = {'name': 'goolfc', 'version': '2.6.10'} toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} -source_urls = ['http://ftpmirror.gnu.org/gsl/'] +source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.3.0.eb index e94c14b23e..7005ed5e6a 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-5.3.0.eb @@ -10,7 +10,7 @@ description = """The GNU Scientific Library (GSL) is a numerical library for C a toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} -source_urls = ['http://ftpmirror.gnu.org/gsl/'] +source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-6.2.5.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-6.2.5.eb index e5967da16f..958500b4dd 100644 --- a/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-ictce-6.2.5.eb @@ -10,7 +10,7 @@ description = """The GNU Scientific Library (GSL) is a numerical library for C a toolchain = {'name': 'ictce', 'version': '6.2.5'} toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} -source_urls = ['http://ftpmirror.gnu.org/gsl/'] +source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" -- GitLab From 924de582574e54f088d3a20e36d53706de6e3d96 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Fri, 16 Jan 2015 09:10:20 +0100 Subject: [PATCH 0352/1217] Added intel/2014b toolchain --- .../easyconfigs/c/Cuby/{Cuby-4.eb => Cuby-4-intel-2014b.eb} | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) rename easybuild/easyconfigs/c/Cuby/{Cuby-4.eb => Cuby-4-intel-2014b.eb} (88%) diff --git a/easybuild/easyconfigs/c/Cuby/Cuby-4.eb b/easybuild/easyconfigs/c/Cuby/Cuby-4-intel-2014b.eb similarity index 88% rename from easybuild/easyconfigs/c/Cuby/Cuby-4.eb rename to easybuild/easyconfigs/c/Cuby/Cuby-4-intel-2014b.eb index df3ddacfad..fee6df968e 100644 --- a/easybuild/easyconfigs/c/Cuby/Cuby-4.eb +++ b/easybuild/easyconfigs/c/Cuby/Cuby-4-intel-2014b.eb @@ -12,12 +12,12 @@ description = """Cuby is a computational chemistry framework written in ruby. to their results, making it easy to create new computational protocols by combining existing blocks of the framework.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'intel', 'version': '2014b'} #Source can be obtained via http://cuby.molecular.cz/?page=Downloads sources = ['cuby4.tgz'] -dependencies = [('Ruby', '2.1.5', '-intel-2014b')] +dependencies = [('Ruby', '2.1.5')] sanity_check_paths = { 'files': ['cuby4%s' % x for x in ['', '.rb' ]], -- GitLab From bc178cb444bda45234ba109cd84c84e9965b1cb0 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 16 Jan 2015 10:44:28 +0100 Subject: [PATCH 0353/1217] libelf: extend sanity check --- easybuild/easyconfigs/l/libelf/libelf-0.8.13-GCC-4.9.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libelf/libelf-0.8.13-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libelf/libelf-0.8.13-GCC-4.9.2.eb index 35722108c9..f0033e4acf 100644 --- a/easybuild/easyconfigs/l/libelf/libelf-0.8.13-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/l/libelf/libelf-0.8.13-GCC-4.9.2.eb @@ -12,7 +12,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://www.mr511.de/software/'] sanity_check_paths = { - 'files': ['lib/libelf.a', 'lib/libelf.so.0', 'include/libelf.h'], + 'files': ['lib/libelf.a', 'lib/libelf.so', 'lib/libelf.so.0', 'include/libelf.h'], 'dirs': ['lib/pkgconfig'] } -- GitLab From 6a0a1a23bb1efdaa4abf3a112a9f14c2ed360c21 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 16 Jan 2015 14:38:30 +0100 Subject: [PATCH 0354/1217] Added GCC easyconfig for Bison --- .../b/Bison/Bison-3.0.3-GCC-4.9.2.eb | 22 +++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-3.0.3-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.3-GCC-4.9.2.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.3-GCC-4.9.2.eb new file mode 100644 index 0000000000..78a6fda211 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.3-GCC-4.9.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.3' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' -- GitLab From 816ffb2ef88166c4032397818e766483124e7914 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 16 Jan 2015 14:38:53 +0100 Subject: [PATCH 0355/1217] Added GCC easyconfig for flex --- .../easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2.eb | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2.eb new file mode 100644 index 0000000000..aa0074d8e2 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2.eb @@ -0,0 +1,14 @@ +name = 'flex' +version = '2.5.38' +easyblock = 'ConfigureMake' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' -- GitLab From f7be6ce938f33fd2905ac2475af36f699bf41b82 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 16 Jan 2015 15:09:57 +0100 Subject: [PATCH 0356/1217] Added GCC easyconfig for Grep --- .../easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb b/easybuild/easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb new file mode 100644 index 0000000000..83ddea8db0 --- /dev/null +++ b/easybuild/easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb @@ -0,0 +1,18 @@ +name = 'Grep' +version = '2.21' +easyblock = 'ConfigureMake' + +homepage = 'http://http://www.gnu.org/software/grep/' +description = """The grep command searches one or more input files for lines containing a match to a specified pattern. By default, grep prints the matching lines.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_XZ] +source_urls = ['http://ftp.gnu.org/gnu/%(namelower)s'] + +sanity_check_paths = { + 'files': [], + 'dirs': ["bin"] +} + +moduleclass = 'tools' -- GitLab From 00af706fc6d0de62adef9cc3adcf8e7d0edefb2a Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 16 Jan 2015 15:15:34 +0100 Subject: [PATCH 0357/1217] Added GCC easyconfig for Parallel --- .../p/Parallel/Parallel-20141122-GCC-4.9.2.eb | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb b/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb new file mode 100644 index 0000000000..47c50f5b0a --- /dev/null +++ b/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb @@ -0,0 +1,17 @@ +name = 'parallel' +version = '20141122' + +homepage = 'http://savannah.gnu.org/projects/parallel/' +description = """parallel: Build and execute shell commands in parallel""" + +sources = [SOURCE_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/parallel'] + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sanity_check_paths = { + 'files': ['bin/parallel'], + 'dirs': [] +} + +moduleclass = 'tools' -- GitLab From 5e2aba1079abfd80a24a0f697b4447a6838a4001 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 16 Jan 2015 15:25:56 +0100 Subject: [PATCH 0358/1217] Added GCC easyconfig for zlib --- .../z/zlib/zlib-1.2.8-GCC-4.9.2.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb new file mode 100644 index 0000000000..1b3b05c520 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From c8336c7901f8adfe38d7ed91c3073e6a97613572 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 16 Jan 2015 15:32:30 +0100 Subject: [PATCH 0359/1217] add easyconfig for FDTD_Solutions 8.11.337 --- .../f/FDTD_Solutions/FDTD_Solutions-8.11.337.eb | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 easybuild/easyconfigs/f/FDTD_Solutions/FDTD_Solutions-8.11.337.eb diff --git a/easybuild/easyconfigs/f/FDTD_Solutions/FDTD_Solutions-8.11.337.eb b/easybuild/easyconfigs/f/FDTD_Solutions/FDTD_Solutions-8.11.337.eb new file mode 100644 index 0000000000..ddfd8fc85d --- /dev/null +++ b/easybuild/easyconfigs/f/FDTD_Solutions/FDTD_Solutions-8.11.337.eb @@ -0,0 +1,14 @@ +name = 'FDTD_Solutions' +version = '8.11.337' + +homepage = 'http://www.lumerical.com/tcad-products/fdtd/' +description = """High performance FDTD-method Maxwell solver for the design, analysis and optimization +of nanophotonic devices, processes and materials.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = [SOURCE_TAR_GZ] + +patches = ['FDTD_install-script.patch'] + +moduleclass = 'cae' -- GitLab From 733e88a68fdc19f0be5ee80a12563420fe713bdd Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 16 Jan 2015 16:53:28 +0100 Subject: [PATCH 0360/1217] Added GCC easyconfig for OpenSSL --- .../o/OpenSSL/OpenSSL-1.0.1k-GCC-4.9.2.eb | 23 +++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-GCC-4.9.2.eb new file mode 100644 index 0000000000..39a21a3a41 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +name = 'OpenSSL' +version = '1.0.1k' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +patches = [ + 'OpenSSL-1.0.1i-fix_parallel_build-1.patch', +] + +dependencies = [('zlib', '1.2.8')] + +runtest = 'test' + +moduleclass = 'system' -- GitLab From 941804876b91a5adf674588facfab170774b987a Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 16 Jan 2015 16:56:10 +0100 Subject: [PATCH 0361/1217] Added GCC easyconfig for cURL --- .../c/cURL/cURL-7.40.0-GCC-4.9.2.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb new file mode 100644 index 0000000000..a255ee57a4 --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.40.0' + +homepage = 'http://curl.haxx.se' +description = """libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, + POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports + SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, + proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, + Kerberos), file transfer resume, http proxy tunneling and more.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://curl.haxx.se/download/'] + +dependencies = [('OpenSSL', '1.0.1k')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' -- GitLab From 9158bb9f87ee8914818c8a90a31a3324bc777501 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 16 Jan 2015 20:51:03 +0100 Subject: [PATCH 0362/1217] Added intel easyconfig for cURL --- .../c/cURL/cURL-7.40.0-intel-2015a.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb new file mode 100644 index 0000000000..09288a6a9b --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.40.0' + +homepage = 'http://curl.haxx.se' +description = """libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, + POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports + SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, + proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, + Kerberos), file transfer resume, http proxy tunneling and more.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://curl.haxx.se/download/'] + +dependencies = [('OpenSSL', '1.0.1k')] + +configopts = "--with-ssl=$EBROOTOPENSSL" + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' -- GitLab From 7f76c0c612b5fea2ac32f05b5a33ea2adae1fd58 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 16 Jan 2015 23:06:08 +0100 Subject: [PATCH 0363/1217] Fixed URL --- easybuild/easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb b/easybuild/easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb index 83ddea8db0..5e23d90ef2 100644 --- a/easybuild/easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb @@ -2,7 +2,7 @@ name = 'Grep' version = '2.21' easyblock = 'ConfigureMake' -homepage = 'http://http://www.gnu.org/software/grep/' +homepage = 'http://www.gnu.org/software/grep/' description = """The grep command searches one or more input files for lines containing a match to a specified pattern. By default, grep prints the matching lines.""" toolchain = {'name': 'GCC', 'version': '4.9.2'} -- GitLab From 7884046a6b2aca809321df3d367752378c054a96 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 16 Jan 2015 23:06:57 +0100 Subject: [PATCH 0364/1217] Moved easyblock line --- easybuild/easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb b/easybuild/easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb index 5e23d90ef2..43c5a459fa 100644 --- a/easybuild/easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/Grep/Grep-2.21-GCC-4.9.2.eb @@ -1,6 +1,7 @@ +easyblock = 'ConfigureMake' + name = 'Grep' version = '2.21' -easyblock = 'ConfigureMake' homepage = 'http://www.gnu.org/software/grep/' description = """The grep command searches one or more input files for lines containing a match to a specified pattern. By default, grep prints the matching lines.""" -- GitLab From 933788a81c84e5a4c37eef4b870d6e821b651508 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 16 Jan 2015 23:08:43 +0100 Subject: [PATCH 0365/1217] Fixed typo in name --- easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb b/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb index 47c50f5b0a..9760a2ba6a 100644 --- a/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb @@ -1,4 +1,4 @@ -name = 'parallel' +name = 'Parallel' version = '20141122' homepage = 'http://savannah.gnu.org/projects/parallel/' -- GitLab From 38dc6e46fb6a52dc00144b93d2ef8963e5f9af3f Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 16 Jan 2015 23:09:38 +0100 Subject: [PATCH 0366/1217] Added easyblock --- easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb b/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb index 9760a2ba6a..0cfb95cf67 100644 --- a/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Parallel' version = '20141122' -- GitLab From d2fbb4afe31933e65f8be53f2ac40cb849a77680 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 16 Jan 2015 23:26:12 +0100 Subject: [PATCH 0367/1217] Fixed problem name versus URL --- easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb b/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb index 0cfb95cf67..370f2c2b26 100644 --- a/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb @@ -6,7 +6,7 @@ version = '20141122' homepage = 'http://savannah.gnu.org/projects/parallel/' description = """parallel: Build and execute shell commands in parallel""" -sources = [SOURCE_TAR_BZ2] +sources = [SOURCELOWER_TAR_BZ2] source_urls = ['http://ftp.gnu.org/gnu/parallel'] toolchain = {'name': 'GCC', 'version': '4.9.2'} -- GitLab From 7d81e90a035275ae25994e445a1fadf980036e8e Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 16 Jan 2015 23:36:25 +0100 Subject: [PATCH 0368/1217] Changed OpenSSL dependency to osdependency --- easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb | 2 +- easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb index a255ee57a4..8a95e9847b 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb @@ -16,7 +16,7 @@ toolchain = {'name': 'GCC', 'version': '4.9.2'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] -dependencies = [('OpenSSL', '1.0.1k')] +osdependencies = [('openssl-devel', 'libssl-dev')] configopts = "--with-ssl=$EBROOTOPENSSL" diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb index 09288a6a9b..adade02462 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb @@ -16,7 +16,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] -dependencies = [('OpenSSL', '1.0.1k')] +osdependencies = [('openssl-devel', 'libssl-dev')] configopts = "--with-ssl=$EBROOTOPENSSL" -- GitLab From a24b144c8206cc1be3a8f8586b29ac3a91f8fbdd Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 16 Jan 2015 23:37:54 +0100 Subject: [PATCH 0369/1217] fix double http:// in FoldX easyconfigs --- easybuild/easyconfigs/f/FoldX/FoldX-2.5.2.eb | 2 +- easybuild/easyconfigs/f/FoldX/FoldX-3.0-beta5.1.eb | 2 +- easybuild/easyconfigs/f/FoldX/FoldX-3.0-beta6.eb | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/f/FoldX/FoldX-2.5.2.eb b/easybuild/easyconfigs/f/FoldX/FoldX-2.5.2.eb index 7ebc139c10..fc612da0cb 100644 --- a/easybuild/easyconfigs/f/FoldX/FoldX-2.5.2.eb +++ b/easybuild/easyconfigs/f/FoldX/FoldX-2.5.2.eb @@ -1,7 +1,7 @@ name = 'FoldX' version = '2.5.2' -homepage = 'http://http://foldx.crg.es/' +homepage = 'http://foldx.crg.es/' description = """FoldX is used to provide a fast and quantitative estimation of the importance of the interactions contributing to the stability of proteins and protein complexes.""" diff --git a/easybuild/easyconfigs/f/FoldX/FoldX-3.0-beta5.1.eb b/easybuild/easyconfigs/f/FoldX/FoldX-3.0-beta5.1.eb index 13c3d91c35..64799c2a13 100644 --- a/easybuild/easyconfigs/f/FoldX/FoldX-3.0-beta5.1.eb +++ b/easybuild/easyconfigs/f/FoldX/FoldX-3.0-beta5.1.eb @@ -1,7 +1,7 @@ name = 'FoldX' version = '3.0-beta5.1' -homepage = 'http://http://foldx.crg.es/' +homepage = 'http://foldx.crg.es/' description = """FoldX is used to provide a fast and quantitative estimation of the importance of the interactions contributing to the stability of proteins and protein complexes.""" diff --git a/easybuild/easyconfigs/f/FoldX/FoldX-3.0-beta6.eb b/easybuild/easyconfigs/f/FoldX/FoldX-3.0-beta6.eb index 6be87cd663..7585ccc7fc 100644 --- a/easybuild/easyconfigs/f/FoldX/FoldX-3.0-beta6.eb +++ b/easybuild/easyconfigs/f/FoldX/FoldX-3.0-beta6.eb @@ -1,7 +1,7 @@ name = 'FoldX' version = '3.0-beta6' -homepage = 'http://http://foldx.crg.es/' +homepage = 'http://foldx.crg.es/' description = """FoldX is used to provide a fast and quantitative estimation of the importance of the interactions contributing to the stability of proteins and protein complexes.""" -- GitLab From f7041377d33a55b23cc807368cbaefa01c02e0f0 Mon Sep 17 00:00:00 2001 From: gjbex Date: Sat, 17 Jan 2015 00:02:54 +0100 Subject: [PATCH 0370/1217] Fixed version number in file versus file name problem; fixed easyblock position --- easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2.eb | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2.eb index aa0074d8e2..9b7e0571f2 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2.eb @@ -1,7 +1,8 @@ -name = 'flex' -version = '2.5.38' easyblock = 'ConfigureMake' +name = 'flex' +version = '2.5.39' + homepage = 'http://flex.sourceforge.net/' description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" -- GitLab From b10cc2959842f3df824d8fb871ec8ab14ac97d09 Mon Sep 17 00:00:00 2001 From: gjbex Date: Sat, 17 Jan 2015 00:24:11 +0100 Subject: [PATCH 0371/1217] Added dependency on module OpenSSL again as comment, and commented out configopts for consistency --- easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb | 4 +++- easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb | 4 +++- 2 files changed, 6 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb index 8a95e9847b..7009ac53e5 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb @@ -16,9 +16,11 @@ toolchain = {'name': 'GCC', 'version': '4.9.2'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +# dependencies = [('OpenSSL', '1.0.1k')] + osdependencies = [('openssl-devel', 'libssl-dev')] -configopts = "--with-ssl=$EBROOTOPENSSL" +# configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb index adade02462..7a5f70d693 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb @@ -16,9 +16,11 @@ toolchain = {'name': 'intel', 'version': '2015a'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] +# dependencies = [('OpenSSL', '1.0.1k')] + osdependencies = [('openssl-devel', 'libssl-dev')] -configopts = "--with-ssl=$EBROOTOPENSSL" +# configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], -- GitLab From 82c167415d431ca7aa28bc717d841c6cbdd49f1e Mon Sep 17 00:00:00 2001 From: gjbex Date: Sat, 17 Jan 2015 00:39:02 +0100 Subject: [PATCH 0372/1217] Added missing easyblock --- easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb b/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb index 5a4362dd71..a28a47d602 100644 --- a/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ## +easyblock = 'ConfigureMake' + name = 'Bash' version = '4.3' -- GitLab From ec0fa2971be8fe119ee7c8212944781b008fc945 Mon Sep 17 00:00:00 2001 From: gjbex Date: Sat, 17 Jan 2015 00:41:52 +0100 Subject: [PATCH 0373/1217] Hm, removed leading comments? --- easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb | 12 ------------ 1 file changed, 12 deletions(-) diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb b/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb index a28a47d602..42daba7ec6 100644 --- a/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb @@ -1,15 +1,3 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit -# Authors:: Valentin Plugaru -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html -## - easyblock = 'ConfigureMake' name = 'Bash' -- GitLab From 81a825923cf996712db72943dca2c970b7ff17aa Mon Sep 17 00:00:00 2001 From: gjbex Date: Sat, 17 Jan 2015 14:53:38 +0100 Subject: [PATCH 0374/1217] Reinserted comments since they do not influence test result --- easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb b/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb index 42daba7ec6..d02188852b 100644 --- a/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb @@ -1,3 +1,15 @@ +## +## This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +## +## Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit +## Authors:: Valentin Plugaru +## License:: MIT/GPL +## $Id$ +## +## This work implements a part of the HPCBIOS project and is a component of the policy: +## http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html +### +# easyblock = 'ConfigureMake' name = 'Bash' -- GitLab From 3daa93c71b915fccd61e2e46d2ad08a35c67c415 Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 10:01:15 +0100 Subject: [PATCH 0375/1217] Added intel easyconfig for latest Boost --- .../Boost-1.57.0-intel-2015a-Python-2.7.9.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.57.0-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.57.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..84fbb7d38c --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,25 @@ +name = 'Boost' +version = '1.57.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +pythonversion = '2.7.9' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' -- GitLab From 58e4a46bd4688eb2eab82ef958b3500d0d77c7dd Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 11:21:26 +0100 Subject: [PATCH 0376/1217] Added intel easyconfig for GMP --- .../g/GMP/GMP-5.1.3-intel-2015a.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/g/GMP/GMP-5.1.3-intel-2015a.eb diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-intel-2015a.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-intel-2015a.eb new file mode 100644 index 0000000000..d78c4c8288 --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-intel-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '5.1.3' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/gmp'] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' -- GitLab From 138d95142eb4d379cd31bf7e3e01886a50f601c7 Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 11:37:06 +0100 Subject: [PATCH 0377/1217] Added intel easyconfig for MPFR --- .../m/MPFR/MPFR-3.1.2-intel-2015a.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-intel-2015a.eb diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-intel-2015a.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-intel-2015a.eb new file mode 100644 index 0000000000..13a5f7f165 --- /dev/null +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-intel-2015a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'MPFR' +version = '3.1.2' + +homepage = 'http://www.mpfr.org' +description = """The MPFR library is a C library for multiple-precision + floating-point computations with correct rounding.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://www.mpfr.org/mpfr-%s/' % version] +sources = [SOURCELOWER_TAR_BZ2] + +patches = ['MPFR_ictce_remove-deprecated-mp.patch'] + +dependencies = [('GMP', '5.1.3')] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libmpfr.%s' % SHLIB_EXT, 'include/mpfr.h'], + 'dirs': [] +} + +moduleclass = 'math' -- GitLab From efe7a0af96eb7ae9eee0239f9f3ea113104c6a15 Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 11:43:15 +0100 Subject: [PATCH 0378/1217] Added intel easyconfig for MPC --- .../m/MPC/MPC-1.0.2-intel-2015a.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb diff --git a/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb new file mode 100644 index 0000000000..ccdaaf9027 --- /dev/null +++ b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'MPC' +version = '1.0.2' + +homepage = 'http://www.multiprecision.org/' +description = """Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal.""" + + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://www.multiprecision.org/mpc/download/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('GMP', '5.1.3'), + ('MPFR', '3.1.2')] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libmpc.so', 'include/mpc.h'], + 'dirs': [] + } + +moduleclass = 'math' -- GitLab From 57140956b1dd40785c908ca2cc8f5b060c4a5ab9 Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 11:50:39 +0100 Subject: [PATCH 0379/1217] Added intel easyconfig for GSL --- .../easyconfigs/g/GSL/GSL-1.16-intel-2015a.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/g/GSL/GSL-1.16-intel-2015a.eb diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-intel-2015a.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-intel-2015a.eb new file mode 100644 index 0000000000..79f876ac1d --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-intel-2015a.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '1.16' + +homepage = 'http://www.gnu.org/software/gsl/' +description = """The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. + The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +moduleclass = 'numlib' -- GitLab From 1c066a4b69d8c71f89cd5efb6befb83abf8a8159 Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 11:55:27 +0100 Subject: [PATCH 0380/1217] Added intel easyconfig for PCRE --- .../p/PCRE/PCRE-8.36-intel-2015a.eb | 20 +++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100644 easybuild/easyconfigs/p/PCRE/PCRE-8.36-intel-2015a.eb diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.36-intel-2015a.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.36-intel-2015a.eb new file mode 100644 index 0000000000..64ff0ffd54 --- /dev/null +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.36-intel-2015a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'PCRE' +version = '8.36' + +homepage = 'http://www.pcre.org/' +description = """ + The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax + and semantics as Perl 5. +""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +configopts = "--with-pic --disable-cpp" + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +moduleclass = 'devel' -- GitLab From 98d26d7613a91a3b41ef8cecfe1bd274a3c7c673 Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 12:03:49 +0100 Subject: [PATCH 0381/1217] Added intel easyconfig for sparsehash --- .../sparsehash-2.0.2-intel-2015a.eb | 20 +++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100644 easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-intel-2015a.eb diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-intel-2015a.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-intel-2015a.eb new file mode 100644 index 0000000000..30a64e487e --- /dev/null +++ b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-intel-2015a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'sparsehash' +version = '2.0.2' + +homepage = 'https://code.google.com/p/sparsehash/' +description = """An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['https://sparsehash.googlecode.com/files/'] + +sanity_check_paths = { + 'files': ['include/google/type_traits.h'], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From ab877a8cad7201f1ec980d9eb650e04478e0f4da Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 12:56:03 +0100 Subject: [PATCH 0382/1217] Added intel easyconfig for SWIG --- .../SWIG-3.0.3-intel-2015a-Python-2.7.9.eb | 23 +++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/s/SWIG/SWIG-3.0.3-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-3.0.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.3-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..5c199680f6 --- /dev/null +++ b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.3-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,23 @@ +name = 'SWIG' +version = '3.0.3' + +homepage = 'http://www.swig.org/' +description = """SWIG is a software development tool that connects programs written in C and C++ with + a variety of high-level programming languages.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +python = "Python" +pythonversion = '2.7.9' +versionsuffix = '-%s-%s' % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('PCRE', '8.36'), +] + +moduleclass = 'devel' -- GitLab From f0b88ac3a0297ddadacd7e685fc0eb187d782b9a Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 16:12:24 +0100 Subject: [PATCH 0383/1217] Style fix, indentation --- easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb index ccdaaf9027..2f267b76fc 100644 --- a/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb +++ b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb @@ -18,8 +18,8 @@ dependencies = [('GMP', '5.1.3'), runtest = 'check' sanity_check_paths = { - 'files': ['lib/libmpc.so', 'include/mpc.h'], - 'dirs': [] + 'files': ['lib/libmpc.so', 'include/mpc.h'], + 'dirs': [] } moduleclass = 'math' -- GitLab From 18b2708abdc70c2940d931d578eb8e0aeadd1b92 Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 16:14:37 +0100 Subject: [PATCH 0384/1217] Fixed style issue source_urls --- easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-intel-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-intel-2015a.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-intel-2015a.eb index 13a5f7f165..11e14c220a 100644 --- a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-intel-2015a.eb +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-intel-2015a.eb @@ -9,7 +9,7 @@ description = """The MPFR library is a C library for multiple-precision toolchain = {'name': 'intel', 'version': '2015a'} -source_urls = ['http://www.mpfr.org/mpfr-%s/' % version] +source_urls = ['http://www.mpfr.org/mpfr-%(version)s/'] sources = [SOURCELOWER_TAR_BZ2] patches = ['MPFR_ictce_remove-deprecated-mp.patch'] -- GitLab From 16e442779d44d42af03d90b53b7516cd7dff5dfc Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 16:18:32 +0100 Subject: [PATCH 0385/1217] Fixed style issues of description --- easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb index 2f267b76fc..2efb366e00 100644 --- a/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb +++ b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb @@ -4,8 +4,13 @@ name = 'MPC' version = '1.0.2' homepage = 'http://www.multiprecision.org/' -description = """Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal.""" - +description = """Gnu Mpc is a C library for the arithmetic of + complex numbers with arbitrarily high precision and correct + rounding of the result. It extends the principles of the IEEE-754 + standard for fixed precision real floating point numbers to + complex numbers, providing well-defined semantics for every + operation. At the same time, speed of operation at high precision + is a major design goal.""" toolchain = {'name': 'intel', 'version': '2015a'} -- GitLab From d7ed2ee966c5b0b2cfa357225b39b3fe23517017 Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 16:19:40 +0100 Subject: [PATCH 0386/1217] Fixed style issues in descripttion --- .../easyconfigs/s/sparsehash/sparsehash-2.0.2-intel-2015a.eb | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-intel-2015a.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-intel-2015a.eb index 30a64e487e..e90039667a 100644 --- a/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-intel-2015a.eb +++ b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-intel-2015a.eb @@ -4,7 +4,10 @@ name = 'sparsehash' version = '2.0.2' homepage = 'https://code.google.com/p/sparsehash/' -description = """An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed.""" +description = """An extremely memory-efficient hash_map + implementation. 2 bits/entry overhead! The SparseHash library + contains several hash-map implementations, including + implementations that optimize for space or speed.""" toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'pic': True} -- GitLab From e9e6be8ecbc7577289b74b196efd359a76970087 Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 21:37:09 +0100 Subject: [PATCH 0387/1217] Added foss easyconfig bzip2 --- .../easyconfigs/b/bzip2/bzip2-1.0.6-foss-2015a.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2015a.eb diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2015a.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2015a.eb new file mode 100644 index 0000000000..4b91fea95d --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2015a.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' -- GitLab From 4c51e517f10460b046556bd2670828d23d91b06b Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 21:37:42 +0100 Subject: [PATCH 0388/1217] Added foss easyconfig zlib --- .../z/zlib/zlib-1.2.8-foss-2015a.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015a.eb diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015a.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015a.eb new file mode 100644 index 0000000000..2011a3f3b4 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 8e5e09d16f2f2a84484b7b2bed81aa6633a7116d Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 21:42:04 +0100 Subject: [PATCH 0389/1217] Added foss easyconfig Szip --- .../easyconfigs/s/Szip/Szip-2.1-foss-2015a.eb | 23 +++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015a.eb diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015a.eb new file mode 100644 index 0000000000..5647497c3f --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.so"] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' -- GitLab From 5fff3b8f4849db243aac64d7ea5cbb146d0e443e Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 21:56:20 +0100 Subject: [PATCH 0390/1217] Added foss easyconfig for libreadline --- .../libreadline/libreadline-6.3-foss-2015a.eb | 27 +++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015a.eb diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015a.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015a.eb new file mode 100644 index 0000000000..353ca8a348 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015a.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' -- GitLab From 7c3028d163a45c42c8ac28cd401f84ca55cd4ea3 Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 22:00:14 +0100 Subject: [PATCH 0391/1217] Added foss easyconfig ncurses --- .../n/ncurses/ncurses-5.9-foss-2015a.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015a.eb diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015a.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015a.eb new file mode 100644 index 0000000000..2f9501c9ae --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015a.eb @@ -0,0 +1,15 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' -- GitLab From 0544f7f68fa99fed45749c812227bd6e7f881e87 Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 22:07:25 +0100 Subject: [PATCH 0392/1217] Added foss easyconfig Python-bare --- .../p/Python/Python-2.7.9-foss-2015a-bare.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb new file mode 100644 index 0000000000..3ee92cdc84 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb @@ -0,0 +1,29 @@ +name = 'Python' +version = '2.7.9' +versionsuffix = '-bare' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# bare installation: no extensions included +exts_list = [] + +moduleclass = 'lang' -- GitLab From e036e914c44b4a949430d43c645b15fe50b40468 Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 22:29:11 +0100 Subject: [PATCH 0393/1217] Added foss easyconfig for Python --- .../p/Python/Python-2.7.9-foss-2015a.eb | 99 +++++++++++++++++++ 1 file changed, 99 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb new file mode 100644 index 0000000000..f930b4b1e4 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb @@ -0,0 +1,99 @@ +name = 'Python' +version = '2.7.9' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.1' +scipyversion = '0.14.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# order is important! +# Version updated 08/JULY/2014 +exts_list = [ + ('setuptools', '11.3.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '6.0.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.4', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-1.8.0-mkl.patch', # % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.21.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.0', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.15.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), +] + +moduleclass = 'lang' -- GitLab From fa2f91d79bb080301e73d541d7384175848c666c Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 19 Jan 2015 23:21:48 +0100 Subject: [PATCH 0394/1217] Removed patch for MKL issue with numpy --- easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb | 3 --- 1 file changed, 3 deletions(-) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb index f930b4b1e4..ab478aa916 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb @@ -39,9 +39,6 @@ exts_list = [ }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': [ - 'numpy-1.8.0-mkl.patch', # % numpyversion, - ], }), ('scipy', scipyversion, { 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], -- GitLab From 764921c0ef4691caed3ee270f658a1111249b0df Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 20 Jan 2015 14:10:38 +0100 Subject: [PATCH 0395/1217] Fixed date --- easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb index ab478aa916..9cdf851d5f 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb @@ -26,7 +26,7 @@ dependencies = [ osdependencies = [('openssl-devel', 'libssl-dev')] # order is important! -# Version updated 08/JULY/2014 +# Version updated 19/JANUARY/2015 exts_list = [ ('setuptools', '11.3.1', { 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], -- GitLab From 531884662a6ab9ec2a294cd3e37bdd9550590e2b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 20 Jan 2015 15:51:33 +0100 Subject: [PATCH 0396/1217] style fix in comment w.r.t. Python extensions version update --- easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb index 9cdf851d5f..8ca80a6e43 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb @@ -26,7 +26,7 @@ dependencies = [ osdependencies = [('openssl-devel', 'libssl-dev')] # order is important! -# Version updated 19/JANUARY/2015 +# package versions updated Jan 19th 2015 exts_list = [ ('setuptools', '11.3.1', { 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb index f807c51fcc..632c8fb490 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb @@ -26,7 +26,7 @@ dependencies = [ osdependencies = [('openssl-devel', 'libssl-dev')] # order is important! -# Version updated 08/JULY/2014 +# package versions updated Jan 19th 2015 exts_list = [ ('setuptools', '11.3.1', { 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], -- GitLab From 5b5b12f8fcefdee1ec087b1cb3bfa3860b49355a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 20 Jan 2015 19:09:18 +0100 Subject: [PATCH 0397/1217] add easyconfig for CP2K 20131211 with intel/2014b --- .../b/Bison/Bison-2.7-intel-2014b.eb | 22 +++++++++++ .../c/CP2K/CP2K-20131211-intel-2014b.eb | 38 +++++++++++++++++++ .../l/libxc/libxc-2.0.1-intel-2014b.eb | 33 ++++++++++++++++ 3 files changed, 93 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-2.7-intel-2014b.eb create mode 100644 easybuild/easyconfigs/c/CP2K/CP2K-20131211-intel-2014b.eb create mode 100644 easybuild/easyconfigs/l/libxc/libxc-2.0.1-intel-2014b.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-intel-2014b.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-intel-2014b.eb new file mode 100644 index 0000000000..7cc3238fc2 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-intel-2014b.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '2.7' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-20131211-intel-2014b.eb b/easybuild/easyconfigs/c/CP2K/CP2K-20131211-intel-2014b.eb new file mode 100644 index 0000000000..613ab67679 --- /dev/null +++ b/easybuild/easyconfigs/c/CP2K/CP2K-20131211-intel-2014b.eb @@ -0,0 +1,38 @@ +name = 'CP2K' +version = '20131211' + +homepage = 'http://cp2k.berlios.de/index.html' +description = """CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular +simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different +methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and +classical pair and many-body potentials. """ + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} + +# Uses a svn checkout from 20131211 (r13439) +sources = [SOURCE_TAR_BZ2] + +patches = [ + 'CP2K-20131211-ifort-compiler-bug-fix.patch', + 'CP2K-2.4.0-fix_compile_date_lastsvn.patch', +] + +dependencies = [ + ('Libint', '1.1.4'), + ('libxc', '2.0.1'), +] + +builddependencies = [ + ('flex', '2.5.37'), + ('Bison', '2.7'), +] + +# don't use parallel make, results in compilation failure +# because Fortran module files aren't created before they are needed +parallel = 1 + +# regression test reports failures: 13/2450 segfault +ignore_regtest_fails = True + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-intel-2014b.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-intel-2014b.eb new file mode 100644 index 0000000000..666874c7a6 --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-intel-2014b.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = '2.0.1' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'opt': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS" FCCPP="$F77 -E" --enable-shared' + +# From the libxc mailing list +# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect +# a fully working testsuite soon (unless someone wants to volunteer to do +# it, of course ) In the meantime, unless the majority of the tests +# fail, your build should be fine. +#runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' + -- GitLab From d99f31eab59e6648a288f8567c0bcb268505112e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 20 Jan 2015 22:22:32 +0100 Subject: [PATCH 0398/1217] fix minor style remark --- easybuild/easyconfigs/l/libxc/libxc-2.0.1-intel-2014b.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-intel-2014b.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-intel-2014b.eb index 666874c7a6..d8bcb27988 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-intel-2014b.eb @@ -30,4 +30,3 @@ sanity_check_paths = { parallel = 1 moduleclass = 'chem' - -- GitLab From 3bfbea0aee3034d7bc4c5d1ca1e485fa118a5510 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 21 Jan 2015 12:17:38 +0100 Subject: [PATCH 0399/1217] include moar extensions suggested by @pescobar --- .../easyconfigs/r/R/R-3.1.2-intel-2015a.eb | 84 +++++++++++++++++-- 1 file changed, 79 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb index 6566de9534..f9a3d072b1 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb @@ -33,9 +33,14 @@ ext_options = { } # Bioconductor packages have a different download url bioconductor_options = { - 'source_urls': ['http://www.bioconductor.org/packages/3.0/bioc/src/contrib/'], + 'source_urls': [ + 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', + ], 'source_tmpl': name_tmpl, } + # !! order of packages is important !! # packages updated on January 8th 2015 exts_list = [ @@ -294,10 +299,6 @@ exts_list = [ ('untb', '1.7-2', ext_options), ('chemometrics', '1.3.8', ext_options), ('FNN', '1.1', ext_options), - #('forecast', '5.8', ext_options), # doesn't build -#/gpfs/scratch/projects/project_gpilot/vsc40023/software/icc/2015.1.133-GCC-4.9.2/composer_xe_2015.1.133/compiler/include/complex(220): error #308: member "std::complex::_M_value" (declared at line 1336 of "/gpfs/scratch/projects/project_gpilot/vsc40023/software/GCC/4.9.2/include/c++/4.9.2/complex") is inaccessible -# return ~__z._M_value; - #('Mcomp', '2.05', ext_options), ('ipred', '0.9-3', ext_options), ('knitr', '1.8', ext_options), ('statmod', '1.4.20', ext_options), @@ -309,6 +310,79 @@ exts_list = [ ('reshape', '0.8.5', ext_options), ('optparse', '1.3.0', ext_options), ('klaR', '0.6-12', ext_options), + ('neuRosim', '0.2-12', ext_options), + ('affyio', '1.34.0', bioconductor_options), + ('BiocInstaller', '1.16.1', bioconductor_options), + ('preprocessCore', '1.28.0', bioconductor_options), + ('affy', '1.44.0', bioconductor_options), + ('GO.db', '3.0.0', bioconductor_options), + ('limma', '3.22.4', bioconductor_options), + ('RBGL', '1.42.0', bioconductor_options), + ('org.Hs.eg.db', '3.0.0', bioconductor_options), + ('AnnotationForge', '1.8.1', bioconductor_options), + ('KEGG.db', '3.0.0', bioconductor_options), + ('annaffy', '1.38.0', bioconductor_options), + ('gcrma', '2.38.0', bioconductor_options), + ('oligoClasses', '1.28.0', bioconductor_options), + ('edgeR', '3.8.5', bioconductor_options), + ('PFAM.db', '3.0.0', bioconductor_options), + ('locfit', '1.5-9.1', ext_options), + ('gridExtra', '0.9.1', ext_options), + ('GGally', '0.5.0', ext_options), + ('baySeq', '2.0.50', bioconductor_options), + ('beanplot', '1.2', ext_options), + ('clValid', '0.6-6', ext_options), + ('qvalue', '1.40.0', bioconductor_options), + ('impute', '1.40.0', bioconductor_options), + ('matrixStats', '0.12.2', ext_options), + ('samr', '2.0', ext_options), + ('DEGseq', '1.20.0', bioconductor_options), + ('DiscriMiner', '0.1-29', ext_options), + ('ellipse', '0.3-8', ext_options), + ('leaps', '2.9', ext_options), + ('FactoMineR', '1.28', ext_options), + ('modeltools', '0.2-21', ext_options), + ('flexclust', '1.3-4', ext_options), + ('flexmix', '2.3-12', ext_options), + ('prabclus', '2.2-6', ext_options), + ('diptest', '0.75-6', ext_options), + ('trimcluster', '0.1-2', ext_options), + ('fpc', '2.1-9', ext_options), + ('BiasedUrn', '1.06.1', ext_options), + ('hgu133plus2.db', '3.0.0', bioconductor_options), + ('TeachingDemos', '2.9', ext_options), + ('jsonlite', '0.9.14', ext_options), + ('kohonen', '2.0.15', ext_options), + ('base64', '1.1', ext_options), + ('illuminaio', '0.8.0', bioconductor_options), + ('registry', '0.2', ext_options), + ('pkgmaker', '0.22', ext_options), + ('rngtools', '1.2.4', ext_options), + ('doRNG', '1.6', ext_options), + ('bumphunter', '1.6.0', bioconductor_options), + ('multtest', '2.22.0', bioconductor_options), + ('siggenes', '1.40.0', bioconductor_options), + ('nleqslv', '2.5', ext_options), + ('widgetTools', '1.44.0', bioconductor_options), + ('DynDoc', '1.44.0', bioconductor_options), + ('tkWidgets', '1.44.0', bioconductor_options), + ('Mfuzz', '2.26.0', bioconductor_options), + ('maSigPro', '1.38.0', bioconductor_options), + ('genoset', '1.20.0', bioconductor_options), + ('RGCCA', '2.0', ext_options), + ('pheatmap', '0.7.7', ext_options), + ('mixOmics', '5.0-3', ext_options), + ('multtest', '2.22.0', bioconductor_options), + ('NOISeq', '2.8.0', bioconductor_options), + ('openxlsx', '2.2.1', ext_options), + ('Rgraphviz', '2.10.0', bioconductor_options), + ('pvclust', '1.3-2', ext_options), + ('RCircos', '1.1.2', ext_options), + ('reshape', '0.8.5', ext_options), + ('RNASeqPower', '1.6.0', bioconductor_options), + ('VennDiagram', '1.6.9', ext_options), + ('xlsxjars', '0.6.1', ext_options), + ('xlsx', '0.5.7', ext_options), ] moduleclass = 'lang' -- GitLab From b5e6cb1cff13d498a8708bcf640c5004b6345a13 Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Wed, 21 Jan 2015 18:18:53 +0000 Subject: [PATCH 0400/1217] update for some weirdness upstream (package changed and no longer has configure script) --- .../l/libtool/libtool-2.4.2-GCC-4.9.2.eb | 16 ++++++++++++++++ .../n/numactl/numactl-2.0.10-GCC-4.9.2.eb | 6 ++++++ 2 files changed, 22 insertions(+) create mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb new file mode 100644 index 0000000000..5135bada26 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb @@ -0,0 +1,16 @@ +# Built with EasyBuild version 2.0.0dev on 2015-01-21_18-09-07 +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.2' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries +behind a consistent, portable interface.""" +toolchain = {'name': 'GCC', 'version': '4.9.2'} # tweaked by EasyBuild (was: {'name': 'GCC', 'version': '4.8.2'}) + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +moduleclass = 'lib' + diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb index a301fa3256..8f0da890ef 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb @@ -3,6 +3,8 @@ easyblock = 'ConfigureMake' name = 'numactl' version = '2.0.10' +checksums = ['682c38305b2596967881f3d77bc3fc9c'] + homepage = 'http://oss.sgi.com/projects/libnuma/' description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. @@ -11,6 +13,10 @@ The libnuma library provides convenient ways for you to add NUMA memory policies sources = [SOURCE_TAR_GZ] source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] +dependencies = [('Automake', '1.15'),('libtool', '2.4.2')] + +preconfigopts = './autogen.sh && ' + toolchain = {'name': 'GCC', 'version': '4.9.2'} sanity_check_paths = { -- GitLab From 725f056369652d0da477a06ec1f6227d0f4503e0 Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Wed, 21 Jan 2015 18:51:13 +0000 Subject: [PATCH 0401/1217] style cleanup for libtool per comments --- easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb index 5135bada26..3a5b27c490 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb @@ -1,4 +1,3 @@ -# Built with EasyBuild version 2.0.0dev on 2015-01-21_18-09-07 easyblock = 'ConfigureMake' name = 'libtool' @@ -7,10 +6,10 @@ version = '2.4.2' homepage = 'http://www.gnu.org/software/libtool' description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.""" -toolchain = {'name': 'GCC', 'version': '4.9.2'} # tweaked by EasyBuild (was: {'name': 'GCC', 'version': '4.8.2'}) + +toolchain = {'name': 'GCC', 'version': '4.9.2'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] moduleclass = 'lib' - -- GitLab From da6d7bb98bc88fe1c0945e73cd2553f2d19db0ba Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Wed, 21 Jan 2015 18:52:16 +0000 Subject: [PATCH 0402/1217] changing to builddeps and reformatting --- easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb index 8f0da890ef..b7ab2bfb57 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb @@ -13,7 +13,10 @@ The libnuma library provides convenient ways for you to add NUMA memory policies sources = [SOURCE_TAR_GZ] source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] -dependencies = [('Automake', '1.15'),('libtool', '2.4.2')] +builddependencies = [ + ('Automake', '1.15'), + ('libtool', '2.4.2'), +] preconfigopts = './autogen.sh && ' -- GitLab From 9c3065c68f2957a77d44158f37dfd8989d73f4cc Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Wed, 21 Jan 2015 19:09:14 +0000 Subject: [PATCH 0403/1217] cleanup spacing, order etc --- .../easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb | 2 +- .../easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb | 9 +++++---- 2 files changed, 6 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb index 3a5b27c490..fdeaf140c1 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb @@ -5,7 +5,7 @@ version = '2.4.2' homepage = 'http://www.gnu.org/software/libtool' description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries -behind a consistent, portable interface.""" + behind a consistent, portable interface.""" toolchain = {'name': 'GCC', 'version': '4.9.2'} diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb index b7ab2bfb57..8629235333 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb @@ -7,11 +7,13 @@ checksums = ['682c38305b2596967881f3d77bc3fc9c'] homepage = 'http://oss.sgi.com/projects/libnuma/' description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. -It does this by supplying a NUMA memory policy to the operating system before running your program. -The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" + It does this by supplying a NUMA memory policy to the operating system before running your program. + The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} -sources = [SOURCE_TAR_GZ] source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] +sources = [SOURCE_TAR_GZ] builddependencies = [ ('Automake', '1.15'), @@ -20,7 +22,6 @@ builddependencies = [ preconfigopts = './autogen.sh && ' -toolchain = {'name': 'GCC', 'version': '4.9.2'} sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], -- GitLab From 5f8c6c14a9757be62bea245b2f86e71e43d768ed Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 22 Jan 2015 09:41:53 +0100 Subject: [PATCH 0404/1217] Added vim swap files to gitignore --- .gitignore | 1 + ...eSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb | 18 ++++++++++++++++++ 2 files changed, 19 insertions(+) create mode 100644 easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb diff --git a/.gitignore b/.gitignore index e6534bd5b1..c6bb2c7fdd 100644 --- a/.gitignore +++ b/.gitignore @@ -6,3 +6,4 @@ LICENSE_HEADER build/ dist/ *egg-info/ +*.swp diff --git a/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb new file mode 100644 index 0000000000..4b14e1c797 --- /dev/null +++ b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb @@ -0,0 +1,18 @@ +name = 'SuiteSparse' +version = '4.4.3' + +homepage = 'http://www.cise.ufl.edu/research/sparse/SuiteSparse/' +description = """SuiteSparse is a collection of libraries manipulate sparse matrices.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'opt': True, 'unroll': True, 'pic': True, 'static': True} + +source_urls = ['http://www.cise.ufl.edu/research/sparse/SuiteSparse/'] +sources = [SOURCE_TAR_GZ] + +parmetis = 'ParMETIS' +parmetis_ver = '4.0.3' +versionsuffix = '-%s-%s' % (parmetis, parmetis_ver) +dependencies = [(parmetis, parmetis_ver)] + +moduleclass = 'numlib' -- GitLab From 0eecf91045d577231c83b4bc0fab1091d2835633 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 22 Jan 2015 10:54:48 +0100 Subject: [PATCH 0405/1217] fix style issues in AFNI easyconfig, remove incomplete/out-of-sync R 3.1.2 easyconfig --- ...-linux_openmp_64-goolf-1.5.14-20141023.eb} | 16 +- .../easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb | 275 ------------------ 2 files changed, 8 insertions(+), 283 deletions(-) rename easybuild/easyconfigs/a/AFNI/{AFNI-linux_openmp_64-goolf-1.5.14.eb => AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb} (72%) delete mode 100644 easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14.eb b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb similarity index 72% rename from easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14.eb rename to easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb index d90c936191..108fd2aeb2 100644 --- a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb @@ -1,33 +1,33 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # Author: Bart Verleye # Center for eResearch, Auckland - +easyblock = 'PackedBinary' name = 'AFNI' version = 'linux_openmp_64' -# see VersionDate in caps3 output - -easyblock = 'PackedBinary' +versionsuffix = '-20141023' homepage = 'http://afni.nimh.nih.gov' description = """Free software for analysis and display of FMRI data """ toolchain = {'name': 'goolf', 'version': '1.5.14'} -source_urls = [('http://afni.nimh.nih.gov/pub/dist/tgz/')] +source_urls = ['http://afni.nimh.nih.gov/pub/dist/tgz/'] sources = ['%(version)s.tgz'] +checksums = [''] dependencies = [ ('R', '3.1.2'), ('PyQt', 'x11-gpl-4.11.3'), + ('tcsh', '6.18.01'), + ('libXp', '1.0.2'), ] -osdependencies = [ - ('libXp','tcsh') -] +modextrapaths = {'PATH': ['']} sanity_check_paths = { 'files': ['afni'], 'dirs': [], } +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb b/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb deleted file mode 100644 index c06ef496d4..0000000000 --- a/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb +++ /dev/null @@ -1,275 +0,0 @@ -name = 'R' -version = '3.1.2' -bioc_version = '3.0' #2.14' - -homepage = 'http://www.r-project.org/' -description = """R is a free software environment for statistical computing and graphics.""" - -#toolchain = {'name': 'iomkl', 'version': '6.5.4'} -toolchain = {'name': 'goolf', 'version': '1.5.14'} -toolchainopts = {'precise': True, 'opt': True} # 'openmp' is enabled in R by default -sources = [SOURCE_TAR_GZ] -source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] - -#preconfigopts = 'BLAS_LIBS="$LIBBLAS_MT" LAPACK_LIBS="$LIBLAPACK_MT"' # use multi-thread BLAS/LAPACK -preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' # use multi-thread BLAS/LAPACK - -configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" -# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below -configopts += " --with-recommended-packages=no" - -dependencies = [ - ('libreadline', '6.2'), # or 6.3 - ('ncurses', '5.9'), - ('libpng', '1.6.10'), # for plotting # or 1.6.12 - ('libxml2', '2.9.1'), # for XML - ('SQLite', '3.8.4.3'), # for RSQLite - ('GEOS', '3.3.5'), # for rgeos, which is for spacetime - ('cURL', '7.29.0'), # for RCurl -# ('netCDF-parallel', '4.2'), # for pbdNCDF4 - ('Java', '1.8.0_5', '', True), # Java bindings are built if Java is found, might as well provide it -] - -sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['R', 'Rscript']] + - ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', - 'R.h', 'Rinterface.h', 'Rinternals.h', - 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], - 'dirs': [] -} - - -def ext_options_extra(**kw): - options = { - 'source_urls': [ - 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive - 'http://cran.r-project.org/src/contrib', # alternative for current packages - ], - 'source_tmpl': '%(name)s_%(version)s.tar.gz', - } - for (name, value) in kw.items(): - options[name] = value - return options - -ext_options = ext_options_extra() - -if "easybuild R extension patching is still broken": - snow_options = ext_options_extra( - source_tmpl = '%(name)s_%(version)s-hpcpatched.tar.gz', source_urls = []) -else: - snow_options = ext_options_extra( - patches = ['snowfixedmpi.patch']) - -bioconductor_options = ext_options_extra( - source_urls = ['http://www.bioconductor.org/packages/%s/bioc/src/contrib/' % bioc_version]) - - -# Left out from original ictce easyconfig: translations & tcltk (extensions), libjpeg-turbo (dep) - -exts_list = [ - # default libraries, only here to sanity check their presence - 'base', - 'compiler', - 'datasets', - 'graphics', - 'grDevices', - 'grid', - 'methods', - 'parallel', - 'splines', - 'stats', - 'stats4', - 'tools', - 'utils', - - # non-standard libraries, should be specified with fixed versions! - ('Rmpi', '0.6-5', ext_options), - ('snow', '0.3-13', snow_options), - ('snowfall', '1.84-6', ext_options), - ('iterators', '1.0.7', ext_options), - ('codetools', '0.2-9', ext_options), - ('foreach', '1.4.2', ext_options), - ('doMPI', '0.2', ext_options), - ('doParallel', '1.0.8', ext_options), - ('rJava', '0.9-6', ext_options), - ('irace', '1.05', ext_options), - ('lattice', '0.20-29', ext_options), - ('RColorBrewer', '1.0-5', ext_options), - ('latticeExtra', '0.6-26', ext_options), - ('Matrix', '1.1-4', ext_options), - ('png', '0.1-7', ext_options), - ('Rcpp', '0.11.3', ext_options), - ('RcppEigen', '0.3.2.2.0', ext_options), - ('quadprog', '1.5-5', ext_options), - ('BB', '2014.10-1', ext_options), - ('MASS', '7.3-35', ext_options), - ('class', '7.3-11', ext_options), - ('e1071', '1.6-4', ext_options), - ('nnet', '7.3-8', ext_options), - ('car', '2.0-21', ext_options), - ('colorspace', '1.2-4', ext_options), - ('DEoptimR', '1.0-2', ext_options), - ('robustbase', '0.92-1', ext_options), - ('sp', '1.0-16', ext_options), - ('vcd', '1.3-2', ext_options), - ('rpart', '4.1-8', ext_options), - ('randomForest', '4.6-10', ext_options), - ('mice', '2.22', ext_options), - ('nlme', '3.1-118', ext_options), - ('nloptr', '1.0.4', ext_options), - ('minqa', '1.2.4', ext_options), - ('lme4', '1.1-7', ext_options), - ('ape', '3.1-4', ext_options), - ('mgcv', '1.8-3', ext_options), - ('logistf', '1.21', ext_options), - ('bitops', '1.0-6', ext_options), - ('RCurl', '1.95-4.3', ext_options), # For rtracklayer - ('boot', '1.3-13', ext_options), - ('foreign', '0.8-61', ext_options), - ('survival', '2.37-7', ext_options), - ('gam', '1.09.1', ext_options), - ('gamlss.data', '4.2-7', ext_options), - ('gamlss.dist', '4.3-1', ext_options), - ('hwriter', '1.3.2', ext_options), - ('KernSmooth', '2.23-13', ext_options), - ('zoo', '1.7-11', ext_options), - ('lmtest', '0.9-33', ext_options), - ('mnormt', '1.5-1', ext_options), - ('mvtnorm', '1.0-1', ext_options), - ('numDeriv', '2012.9-1', ext_options), - ('coda', '0.16-1', ext_options), - ('pscl', '1.4.6', ext_options), - ('sandwich', '2.3-2', ext_options), - ('sfsmisc', '1.0-26', ext_options), - ('spatial', '7.3-8', ext_options), - ('VGAM', '0.9-5', ext_options), - ('waveslim', '1.7.3', ext_options), - ('profileModel', '0.5-9', ext_options), - ('brglm', '0.5-9', ext_options), - ('deSolve', '1.11', ext_options), - ('tseriesChaos', '0.1-13', ext_options), - ('tseries', '0.10-32', ext_options), - ('neuRosim', '0.2-10', ext_options), - ('fastICA', '1.2-0', ext_options), - ('R.methodsS3', '1.6.1', ext_options), - ('R.oo', '1.18.0', ext_options), - ('Rniftilib', '0.0-32', ext_options), - ('igraph', '0.7.1', ext_options), - ('gbm', '2.1', ext_options), - ('stringr', '0.6.2', ext_options), - ('plyr', '1.8.1', ext_options), - ('reshape', '0.8.5', ext_options), - ('reshape2', '1.4', ext_options), - ('dichromat', '2.0-0', ext_options), - ('Formula', '1.1-2', ext_options), - ('cluster', '1.15.3', ext_options), - ('acepack', '1.3-3.3', ext_options), - ('Hmisc', '3.14-5', ext_options), - ('munsell', '0.4.2', ext_options), - ('labeling', '0.3', ext_options), - ('scales', '0.2.4', ext_options), - ('fastcluster', '1.1.13', ext_options), - ('digest', '0.6.4', ext_options), - ('gtable', '0.1.2', ext_options), - ('proto', '0.3-10', ext_options), - ('ggplot2', '1.0.0', ext_options), - ('maptools', '0.8-30', ext_options), - ('intervals', '0.15.0', ext_options), - ('xts', '0.9-7', ext_options), - ('rgeos', '0.3-8', ext_options), - ('spacetime', '1.1-1', ext_options), - ('FNN', '1.1', ext_options), - ('gstat', '1.0-19', ext_options), - ('deldir', '0.1-6', ext_options), - ('LearnBayes', '2.15', ext_options), - ('abind', '1.4-0', ext_options), - ('spdep', '0.5-77', ext_options), - ('splancs', '2.01-36', ext_options), - ('DCluster', '0.2-6', ext_options), - ('tensor', '1.5', ext_options), - ('polyclip', '1.3-0', ext_options), - ('goftest', '1.0-2', ext_options), - ('spatstat', '1.39-1', ext_options), - - ('getopt', '1.20.0', ext_options), - ('optparse', '1.2.0', ext_options), # for QIIME - ('permute', '0.8-3', ext_options), - ('vegan', '2.2-0', ext_options), # for QIIME - - ('spam', '1.0-1', ext_options), - ('RandomFields', '3.0.35', ext_options), # 3.0.44 requires Tcl etc. - ('geoR', '1.7-4.1', ext_options), - ('geoRglm', '0.9-4', ext_options), - ('R2WinBUGS', '2.1-19', ext_options), - ('R2OpenBUGS', '3.2-2.2', ext_options), - ('akima', '0.5-11', ext_options), - ('rjags', '3-14', ext_options), - ('R2jags', '0.04-03', ext_options), - ('DBI', '0.3.1', ext_options), - ('xtable', '1.7-4', ext_options), - ('RSQLite', '1.0.0', ext_options), - ('locfit', '1.5-9.1', ext_options), - ('lpSolve', '5.6.10', ext_options), - ('glmmML', '1.0', ext_options), - ('survey', '3.30-3', ext_options), - ('rlecuyer', '0.3-3', ext_options), - ('crs', '0.15-23', ext_options), - ('dclone', '2.0-0', ext_options), - - ('caTools', '1.17.1', ext_options), - ('gtools', '3.4.1', ext_options), - ('gdata', '2.13.3', ext_options), - ('gplots', '2.14.2', ext_options), - ('gsalib', '2.0', ext_options), - ('inline', '0.3.13', ext_options), - ('RcppArmadillo', '0.4.500.0', ext_options), - - ('XML', '3.98-1.1', ext_options), - ('spgrass6', '0.8-6', ext_options), - - ('checkmate', '1.5.0', ext_options), - ('BBmisc', '1.8', ext_options), - ('fail', '1.2', ext_options), - ('brew', '1.0-6', ext_options), - ('base64enc', '0.1-2', ext_options), - ('sendmailR', '1.2-1', ext_options), - ('BatchJobs', '1.5', ext_options), - - ('BiocInstaller', '1.16.1', bioconductor_options), - ('BiocGenerics', '0.12.1', bioconductor_options), - ('Biobase', '2.26.0', bioconductor_options), - ('S4Vectors', '0.4.0', bioconductor_options), - ('IRanges', '2.0.0', bioconductor_options), - ('XVector', '0.6.0', bioconductor_options), - ('zlibbioc', '1.12.0', bioconductor_options), - ('Biostrings', '2.34.0', bioconductor_options), - ('GenomeInfoDb', '1.2.3', bioconductor_options), - ('AnnotationDbi', '1.28.1', bioconductor_options), - ('GenomicRanges', '1.18.1', bioconductor_options), - ('Rsamtools', '1.18.2', bioconductor_options), - ('BiocParallel', '1.0.0', bioconductor_options), - ('GenomicAlignments', '1.2.1', bioconductor_options), - ('rtracklayer', '1.26.2', bioconductor_options), - ('BSgenome', '1.34.0', bioconductor_options), - ('graph', '1.44.0', bioconductor_options), - ('annotate', '1.44.0', bioconductor_options), - ('genefilter', '1.48.1', bioconductor_options), - ('geneplotter', '1.44.0', bioconductor_options), - ('DESeq', '1.18.0', bioconductor_options), - ('DESeq2', '1.6.2', bioconductor_options), - ('ShortRead', '1.24.0', bioconductor_options), - - ('rlecuyer', '0.3-3', ext_options), - ('pbdMPI', '0.2-5', ext_options), - ('pbdSLAP', '0.1-9', ext_options), - ('pbdBASE', '0.2-3', ext_options), # with icc: Rtools/tools.c(41): error: incorrect use of va_start - ('pbdDMAT', '0.2-3', ext_options), # depends on pdbBASE - #('pbdNCDF4', '0.1-4', ext_options), # add parallel netCDF as a dependency if this gets added - - #('BH', '1.54.0-5', ext_options), # Boost headers for rstan - #('rstan', '2.4', ext_options_extra(source_urls = ['http://rstan.org/repo/src/contrib/'])), -] - -moduleclass = 'lang' -- GitLab From ae21d7547d6b4bf22f47adc0f7020a1c9e7069dc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 22 Jan 2015 11:20:46 +0100 Subject: [PATCH 0406/1217] style cleanup in PyQt and SIP easyconfigs, ad checksum in AFNI easyconfigs --- ...I-linux_openmp_64-goolf-1.5.14-20141023.eb | 4 +-- .../PyQt-4.11.3-goolf-1.5.14-Python-2.7.6.eb | 29 +++++++++++++++++++ .../PyQt/PyQt-x11-gpl-4.11.3-goolf-1.5.14.eb | 25 ---------------- .../SIP-4.16.4-goolf-1.5.14-Python-2.7.6.eb | 25 ++++++++++++++++ .../s/SIP/SIP-4.16.4-goolf-1.5.14.eb | 20 ------------- 5 files changed, 56 insertions(+), 47 deletions(-) create mode 100644 easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.6.eb delete mode 100644 easybuild/easyconfigs/p/PyQt/PyQt-x11-gpl-4.11.3-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.6.eb delete mode 100644 easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb index 108fd2aeb2..b6787ef029 100644 --- a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb +++ b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb @@ -14,11 +14,11 @@ toolchain = {'name': 'goolf', 'version': '1.5.14'} source_urls = ['http://afni.nimh.nih.gov/pub/dist/tgz/'] sources = ['%(version)s.tgz'] -checksums = [''] +checksums = ['8800092268d8bfc05611515b0795dae2'] dependencies = [ ('R', '3.1.2'), - ('PyQt', 'x11-gpl-4.11.3'), + ('PyQt', '4.11.3', '-Python-2.7.6'), ('tcsh', '6.18.01'), ('libXp', '1.0.2'), ] diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.6.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.6.eb new file mode 100644 index 0000000000..3bddca7274 --- /dev/null +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.6.eb @@ -0,0 +1,29 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Bart Verleye +# Center for eResearch, Auckland +easyblock = 'ConfigureMakePythonPackage' + +name = 'PyQt' +version = '4.11.3' + +homepage = 'http://www.riverbankcomputing.co.uk/software/pyqt' +description = """PyQt is a set of Python v2 and v3 bindings for Digia's Qt application framework.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = ['%(name)s-x11-gpl-%(version)s.tar.gz'] +source_urls = ['http://sourceforge.net/projects/pyqt/files/PyQt4/PyQt-x11-gpl-%(version)s'] + +python = 'Python' +pyver = '2.7.6' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), + ('SIP', '4.16.4', versionsuffix), + ('Qt', '4.8.5'), +] + +configopts = " configure-ng.py --confirm-license" + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-x11-gpl-4.11.3-goolf-1.5.14.eb b/easybuild/easyconfigs/p/PyQt/PyQt-x11-gpl-4.11.3-goolf-1.5.14.eb deleted file mode 100644 index 6c3e97606d..0000000000 --- a/easybuild/easyconfigs/p/PyQt/PyQt-x11-gpl-4.11.3-goolf-1.5.14.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'ConfigureMakePythonPackage' -name = 'PyQt' -version = 'x11-gpl-4.11.3' - - - - -homepage = 'http://www.riverbankcomputing.co.uk/software/pyqt' -description = """ -PyQt is a set of Python v2 and v3 bindings for Digia's Qt application framework -and runs on all platforms supported by Qt including Windows, MacOS/X and Linux. -PyQt5 supports Qt v5. PyQt4 supports Qt v4 and will build against Qt v5. -The bindings are implemented as a set of Python modules and contain over 620 classes. -""" -toolchain = {'name': 'goolf', 'version': '1.5.14'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://sourceforge.net/projects/pyqt/files/PyQt4/PyQt-4.11.3'] - -dependencies = [('Python', '2.7.6'), - ('SIP','4.16.4'), - ('Qt','4.8.5')] - -configopts = " configure-ng.py --confirm-license" - diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.6.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.6.eb new file mode 100644 index 0000000000..09fa92b8cd --- /dev/null +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.6.eb @@ -0,0 +1,25 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Bart Verleye +# Center for eResearch, Auckland +easyblock = 'ConfigureMakePythonPackage' + +name = 'SIP' +version = '4.16.4' + +homepage = 'http://www.riverbankcomputing.com/software/sip/' +description = """SIP is a tool that makes it very easy to create Python bindings for C and C++ libraries.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://sourceforge.net/projects/pyqt/files/sip/sip-%(version)s'] + +python = 'Python' +pyver = '2.7.6' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [(python, pyver)] + +configopts = "configure.py" + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14.eb deleted file mode 100644 index 5b0fc8c465..0000000000 --- a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14.eb +++ /dev/null @@ -1,20 +0,0 @@ -easyblock = 'ConfigureMakePythonPackage' -name = 'SIP' -version = '4.16.4' - -homepage = 'http://www.riverbankcomputing.com/software/sip/' -description = """ -SIP is a tool that makes it very easy to create Python bindings for C and C++ -libraries. It was originally developed to create PyQt, the Python bindings -for the Qt toolkit, but can be used to create bindings for any C or C++ library. -""" - -toolchain = {'name': 'goolf', 'version': '1.5.14'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://sourceforge.net/projects/pyqt/files/sip/sip-4.16.4'] - -dependencies = [('Python', '2.7.6')] - -configopts = " configure.py" - -- GitLab From ef2ea2ac734fe6cddd250168a6f92b82bb6fd343 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 22 Jan 2015 11:31:21 +0100 Subject: [PATCH 0407/1217] change Python version to 2.7.9 in PyQt/SIP easyconfigs --- .../a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb | 2 +- ...Python-2.7.6.eb => PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb} | 2 +- ...-Python-2.7.6.eb => SIP-4.16.4-goolf-1.5.14-Python-2.7.9.eb} | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) rename easybuild/easyconfigs/p/PyQt/{PyQt-4.11.3-goolf-1.5.14-Python-2.7.6.eb => PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb} (98%) rename easybuild/easyconfigs/s/SIP/{SIP-4.16.4-goolf-1.5.14-Python-2.7.6.eb => SIP-4.16.4-goolf-1.5.14-Python-2.7.9.eb} (97%) diff --git a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb index b6787ef029..83a0bf5863 100644 --- a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb +++ b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb @@ -18,7 +18,7 @@ checksums = ['8800092268d8bfc05611515b0795dae2'] dependencies = [ ('R', '3.1.2'), - ('PyQt', '4.11.3', '-Python-2.7.6'), + ('PyQt', '4.11.3', '-Python-2.7.9'), ('tcsh', '6.18.01'), ('libXp', '1.0.2'), ] diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.6.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb similarity index 98% rename from easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.6.eb rename to easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb index 3bddca7274..634473d36d 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.6.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb @@ -15,7 +15,7 @@ sources = ['%(name)s-x11-gpl-%(version)s.tar.gz'] source_urls = ['http://sourceforge.net/projects/pyqt/files/PyQt4/PyQt-x11-gpl-%(version)s'] python = 'Python' -pyver = '2.7.6' +pyver = '2.7.9' versionsuffix = '-%s-%s' % (python, pyver) dependencies = [ diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.6.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.9.eb similarity index 97% rename from easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.6.eb rename to easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.9.eb index 09fa92b8cd..20ee0d6828 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.6.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.9.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://sourceforge.net/projects/pyqt/files/sip/sip-%(version)s'] python = 'Python' -pyver = '2.7.6' +pyver = '2.7.9' versionsuffix = '-%s-%s' % (python, pyver) dependencies = [(python, pyver)] -- GitLab From 8f4db313d50b573d5c8ebd9c344944a9a3591e6a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 22 Jan 2015 11:36:58 +0100 Subject: [PATCH 0408/1217] bump Qt version in PyQt to 4.8.6 --- .../easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb index 634473d36d..3a7c99d3b4 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb @@ -21,7 +21,7 @@ versionsuffix = '-%s-%s' % (python, pyver) dependencies = [ (python, pyver), ('SIP', '4.16.4', versionsuffix), - ('Qt', '4.8.5'), + ('Qt', '4.8.6'), ] configopts = " configure-ng.py --confirm-license" -- GitLab From ae145f09928274687a1983ff1844c73f316123d3 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 22 Jan 2015 11:37:53 +0100 Subject: [PATCH 0409/1217] add easyconfig for Python 2.7.9 with goolf/1.5.14 --- .../libreadline-6.3-goolf-1.5.14.eb | 27 ++++++ .../p/Python/Python-2.7.9-goolf-1.5.14.eb | 96 +++++++++++++++++++ .../z/zlib/zlib-1.2.8-goolf-1.5.14.eb | 24 +++++ 3 files changed, 147 insertions(+) create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.5.14.eb new file mode 100644 index 0000000000..4e4a74b247 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.5.14.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb new file mode 100644 index 0000000000..2bf2418080 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb @@ -0,0 +1,96 @@ +name = 'Python' +version = '2.7.9' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.1' +scipyversion = '0.14.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# order is important! +# package versions updated Jan 19th 2015 +exts_list = [ + ('setuptools', '11.3.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '6.0.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.4', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.21.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.0', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.15.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb new file mode 100644 index 0000000000..8b2ff4d3a0 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From a6cd09d11325b18683b550ebd936fd3e109d63bc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 22 Jan 2015 11:39:45 +0100 Subject: [PATCH 0410/1217] add OpenSSL 1.0.1k easyconfig with goolf/1.5.14 --- .../o/OpenSSL/OpenSSL-1.0.1k-goolf-1.5.14.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-goolf-1.5.14.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-goolf-1.5.14.eb new file mode 100644 index 0000000000..7815b2d7b3 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1k-goolf-1.5.14.eb @@ -0,0 +1,24 @@ +name = 'OpenSSL' +version = '1.0.1k' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +patches = [ + 'OpenSSL-1.0.1f_icc-fixes.patch', + 'OpenSSL-1.0.1i-fix_parallel_build-1.patch', +] + +dependencies = [('zlib', '1.2.8')] + +runtest = 'test' + +moduleclass = 'system' -- GitLab From 38447f4f3d0f4e1a1d83401f028c22d1ed8bd037 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 22 Jan 2015 11:56:43 +0100 Subject: [PATCH 0411/1217] add easyconfig for R 3.1.2 with goolf/1.5.14 --- .../libjpeg-turbo-1.4.0-goolf-1.5.14.eb | 24 ++ .../l/libpng/libpng-1.6.16-goolf-1.5.14.eb | 19 + .../libreadline-6.3-goolf-1.5.14.eb | 27 ++ .../n/NASM/NASM-2.11.06-goolf-1.5.14.eb | 30 ++ .../easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb | 388 ++++++++++++++++++ .../z/zlib/zlib-1.2.8-goolf-1.5.14.eb | 24 ++ 6 files changed, 512 insertions(+) create mode 100644 easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/l/libpng/libpng-1.6.16-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.5.14.eb new file mode 100644 index 0000000000..6af6464ee6 --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.5.14.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.4.0' + +homepage = 'http://sourceforge.net/libjpeg-turbo/' +description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG +compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('NASM', '2.11.06'), +] + +configopts = "--with-jpeg8" +runtest = "test" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.16-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.16-goolf-1.5.14.eb new file mode 100644 index 0000000000..634458c7c9 --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.16-goolf-1.5.14.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.16' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.5.14.eb new file mode 100644 index 0000000000..4e4a74b247 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.5.14.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.5.14.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.5.14.eb new file mode 100644 index 0000000000..e4df9a5cd4 --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.5.14.eb @@ -0,0 +1,30 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.11.06' + +homepage = 'http://www.nasm.us/' +description = """NASM: General-purpose x86 assembler""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb b/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb new file mode 100644 index 0000000000..f244aa3da4 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb @@ -0,0 +1,388 @@ +name = 'R' +version = '3.1.2' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.16'), # for plotting in R + ('libjpeg-turbo', '1.4.0'), # for plottting in R + ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it +] + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.r-project.org/src/contrib/', # current version of packages + 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': name_tmpl, +} +# Bioconductor packages have a different download url +bioconductor_options = { + 'source_urls': [ + 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', + ], + 'source_tmpl': name_tmpl, +} + +# !! order of packages is important !! +# packages updated on January 8th 2015 +exts_list = [ + # default libraries, only here to sanity check their presence + 'base', + 'datasets', + 'graphics', + 'grDevices', + 'grid', + 'methods', + 'splines', + 'stats', + 'stats4', + 'tools', + 'utils', + # non-standard libraries, should be specified with fixed versions! + ('Rmpi', '0.6-5', dict(ext_options.items() + [('patches', ['Rmpi-0.6-5_impi5.patch'])])), + ('abind', '1.4-0', ext_options), + ('magic', '1.5-6', ext_options), + ('geometry', '0.3-4', dict(ext_options.items() + [('patches', ['geometry-0.3-4-icc.patch'])])), + ('bit', '1.1-12', ext_options), + ('filehash', '2.2-2', ext_options), + ('ff', '2.2-13', ext_options), + ('bnlearn', '3.6', ext_options), + ('bootstrap', '2014.4', ext_options), + ('combinat', '0.0-8', ext_options), + ('deal', '1.2-37', ext_options), + ('fdrtool', '1.2.13', ext_options), + ('formatR', '1.0', ext_options), + ('gtools', '3.4.1', ext_options), + ('gdata', '2.13.3', ext_options), + ('GSA', '1.03', ext_options), + ('highr', '0.4', ext_options), + ('infotheo', '1.2.0', ext_options), + ('lars', '1.2', ext_options), + ('lazy', '1.2-15', ext_options), + ('kernlab', '0.9-19', ext_options), + ('mime', '0.2', ext_options), + ('markdown', '0.7.4', ext_options), + ('mlbench', '2.1-1', ext_options), + ('NLP', '0.1-5', ext_options), + ('mclust', '4.4', ext_options), + ('RANN', '2.4.1', ext_options), + ('rmeta', '2.16', ext_options), + ('segmented', '0.5-1.0', ext_options), + ('som', '0.3-5', ext_options), + ('SuppDists', '1.1-9.1', ext_options), + ('stabledist', '0.6-6', ext_options), + ('survivalROC', '1.0.3', ext_options), + ('pspline', '1.0-16', ext_options), + ('timeDate', '3011.99', ext_options), + ('longmemo', '1.0-0', ext_options), + ('ADGofTest', '0.3', ext_options), + ('ade4', '1.6-2', ext_options), + ('AlgDesign', '1.1-7.3', ext_options), + ('base64enc', '0.1-2', ext_options), + ('BH', '1.55.0-3', ext_options), + ('brew', '1.0-6', ext_options), + ('Brobdingnag', '1.2-4', ext_options), + ('corpcor', '1.6.7', ext_options), + ('longitudinal', '1.1.10', ext_options), + ('checkmate', '1.5.1', ext_options), + ('cubature', '1.1-2', ext_options), + ('DEoptimR', '1.0-2', ext_options), + ('digest', '0.6.8', ext_options), + ('fastmatch', '1.0-4', ext_options), + ('ffbase', '0.11.3', ext_options), + ('iterators', '1.0.7', ext_options), + ('maps', '2.3-9', ext_options), + ('nnls', '1.4', ext_options), + ('sendmailR', '1.2-1', ext_options), + ('spam', '1.0-1', ext_options), + ('subplex', '1.1-4', ext_options), + ('stringr', '0.6.2', ext_options), + ('evaluate', '0.5.5', ext_options), + ('logspline', '2.1.5', ext_options), + ('ncbit', '2013.03.29', ext_options), + ('permute', '0.8-3', ext_options), + ('plotrix', '3.5-10', ext_options), + ('randomForest', '4.6-10', ext_options), + ('scatterplot3d', '0.3-35', ext_options), + ('SparseM', '1.6', ext_options), + ('tripack', '1.3-6', ext_options), + ('irace', '1.06', ext_options), + ('rJava', '0.9-6', ext_options), + ('lattice', '0.20-29', ext_options), + ('RColorBrewer', '1.1-2', ext_options), + ('latticeExtra', '0.6-26', ext_options), + ('Matrix', '1.1-4', ext_options), + ('png', '0.1-7', ext_options), + ('Rcpp', '0.11.3', ext_options), + ('RcppArmadillo', '0.4.600.0', ext_options), + ('plyr', '1.8.1', ext_options), + ('pROC', '1.7.3', ext_options), + ('quadprog', '1.5-5', ext_options), + ('BB', '2014.10-1', ext_options), + ('BBmisc', '1.8', ext_options), + ('fail', '1.2', ext_options), + ('rlecuyer', '0.3-3', ext_options), + ('snow', '0.3-13', ext_options), + ('MASS', '7.3-35', ext_options), + ('tree', '1.0-35', ext_options), + ('pls', '2.4-3', ext_options), + ('class', '7.3-11', ext_options), + ('e1071', '1.6-4', ext_options), + ('nnet', '7.3-8', ext_options), + ('car', '2.0-22', ext_options), + ('colorspace', '1.2-4', ext_options), + ('robustbase', '0.92-2', ext_options), + ('sp', '1.0-17', ext_options), + ('vcd', '1.3-2', ext_options), + ('snowfall', '1.84-6', ext_options), + ('rpart', '4.1-8', ext_options), + ('mice', '2.22', ext_options), + ('nlme', '3.1-118', ext_options), + ('urca', '1.2-8', ext_options), + ('fracdiff', '1.4-2', ext_options), + ('mgcv', '1.8-4', ext_options), + ('logistf', '1.21', ext_options), + ('akima', '0.5-11', ext_options), + ('bitops', '1.0-6', ext_options), + ('boot', '1.3-13', ext_options), + ('mixtools', '1.0.2', ext_options), + ('cluster', '1.15.3', ext_options), + ('gclus', '1.3.1', ext_options), + ('coda', '0.16-1', ext_options), + ('codetools', '0.2-9', ext_options), + ('foreach', '1.4.2', ext_options), + ('doMC', '1.3.3', ext_options), + ('DBI', '0.3.1', ext_options), + ('foreign', '0.8-62', ext_options), + ('survival', '2.37-7', ext_options), + ('gam', '1.09.1', ext_options), + ('gamlss.data', '4.2-7', ext_options), + ('gamlss.dist', '4.3-1', ext_options), + ('hwriter', '1.3.2', ext_options), + ('KernSmooth', '2.23-13', ext_options), + ('zoo', '1.7-11', ext_options), + ('xts', '0.9-7', ext_options), + ('TTR', '0.22-0', ext_options), + ('quantmod', '0.4-3', ext_options), + ('lmtest', '0.9-33', ext_options), + ('mnormt', '1.5-1', ext_options), + ('mvtnorm', '1.0-2', ext_options), + ('pcaPP', '1.9-60', ext_options), + ('numDeriv', 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a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb new file mode 100644 index 0000000000..8b2ff4d3a0 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 9aaa53c83e0298512250c9af85e8dd7f546559f4 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 22 Jan 2015 12:00:31 +0100 Subject: [PATCH 0412/1217] Likwid with intel/2015a --- .../l/likwid/likwid-3.1.3-intel-2015a.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a.eb diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a.eb b/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a.eb new file mode 100644 index 0000000000..3cef22858a --- /dev/null +++ b/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'likwid' +version = '3.1.3' + +homepage = 'http://code.google.com/p/likwid/' +description = """Likwid stands for Like I knew what I am doing. This project contributes easy to use + command line tools for Linux to support programmers in developing high performance multi threaded programs.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://ftp.fau.de/pub/likwid/'] + +skipsteps = ['configure'] +buildopts='CC="$CC" CFLAGS="$CFLAGS -std=c99"' +installopts = 'PREFIX=%(installdir)s' + +sanity_check_paths = { + 'files': ["bin/likwid-features", "bin/likwid-memsweeper", "bin/likwid-mpirun", "bin/likwid-perfctr", + "bin/likwid-perfscope", "bin/likwid-pin", "bin/likwid-powermeter", "bin/likwid-topology", + "lib/liblikwidpin.so", "lib/liblikwid.a"], + 'dirs': ["man/man1"] +} + +moduleclass = 'devel' -- GitLab From af18ad1373fe4cbb7198c561c02ea74fe7bf3c1c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 22 Jan 2015 12:06:19 +0100 Subject: [PATCH 0413/1217] add easyconfig for Qt 4.8.6 with goolf/1.5.14 --- .../g/GLib/GLib-2.40.0-goolf-1.5.14.eb | 21 ++++++++++++++++++ .../g/gettext/gettext-0.19.2-goolf-1.5.14.eb | 17 ++++++++++++++ .../l/libffi/libffi-3.1-goolf-1.5.14.eb | 22 +++++++++++++++++++ .../easyconfigs/q/Qt/Qt-4.8.6-goolf-1.5.14.eb | 19 ++++++++++++++++ 4 files changed, 79 insertions(+) create mode 100644 easybuild/easyconfigs/g/GLib/GLib-2.40.0-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/g/gettext/gettext-0.19.2-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/l/libffi/libffi-3.1-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/q/Qt/Qt-4.8.6-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.40.0-goolf-1.5.14.eb b/easybuild/easyconfigs/g/GLib/GLib-2.40.0-goolf-1.5.14.eb new file mode 100644 index 0000000000..70218fe010 --- /dev/null +++ b/easybuild/easyconfigs/g/GLib/GLib-2.40.0-goolf-1.5.14.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'GLib' +version = '2.40.0' + +homepage = 'http://www.gtk.org/' +description = """GLib is one of the base libraries of the GTK+ project""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://ftp.gnome.org/pub/gnome/sources/glib/%(version_major_minor)s/'] +sources = ['glib-%(version)s.tar.xz'] + +dependencies = [ + ('libffi', '3.1'), + ('gettext', '0.19.2'), +] +builddependencies = [('Python', '2.7.9')] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.2-goolf-1.5.14.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-goolf-1.5.14.eb new file mode 100644 index 0000000000..9cd1cbcdb9 --- /dev/null +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-goolf-1.5.14.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'gettext' +version = '0.19.2' + +homepage = 'http://www.gnu.org/software/gettext/' +description = """GNU `gettext' is an important step for the GNU Translation Project, as it is an asset on which we may +build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools +and documentation""" +toolchain = {'name': 'goolf', 'version': '1.5.14'} # tweaked by EasyBuild (was: {'name': 'intel', 'version': '2014b'}) + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = '--without-emacs' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.1-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libffi/libffi-3.1-goolf-1.5.14.eb new file mode 100644 index 0000000000..e4b687848f --- /dev/null +++ b/easybuild/easyconfigs/l/libffi/libffi-3.1-goolf-1.5.14.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'libffi' +version = '3.1' + +homepage = 'http://sourceware.org/libffi/' +description = """The libffi library provides a portable, high level programming interface to various calling +conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" +toolchain = {'name': 'goolf', 'version': '1.5.14'} # tweaked by EasyBuild (was: {'name': 'intel', 'version': '2014b'}) + +source_urls = [ + 'ftp://sourceware.org/pub/libffi/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', +] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['lib/libffi.%s' % SHLIB_EXT, 'lib/libffi.a'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.6-goolf-1.5.14.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.6-goolf-1.5.14.eb new file mode 100644 index 0000000000..6435694c00 --- /dev/null +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.6-goolf-1.5.14.eb @@ -0,0 +1,19 @@ +name = 'Qt' +version = '4.8.6' + +homepage = 'http://qt-project.org/' +description = "Qt is a comprehensive cross-platform C++ application framework." + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +source_urls = [ + 'http://origin.releases.qt-project.org/qt4/source/', + 'http://master.qt-project.org/archive/qt/%(version_major_minor)s/%(version)s/' +] +sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] + +patches = ['Qt-4.8.6_icc-qUnused.patch'] + +dependencies = [('GLib', '2.40.0')] + +moduleclass = 'devel' -- GitLab From cd1d83938c305a11c7a0b69b959e8572a3aaf745 Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 22 Jan 2015 12:08:37 +0100 Subject: [PATCH 0414/1217] Added intel easyconfig for ParMETIS --- .../p/ParMETIS/ParMETIS-4.0.3-intel-2015b.eb | 22 +++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015b.eb diff --git a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015b.eb b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015b.eb new file mode 100644 index 0000000000..815da9d042 --- /dev/null +++ b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015b.eb @@ -0,0 +1,22 @@ +name = 'ParMETIS' +version = '4.0.3' + +homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview' +description = """ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, + meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes + routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in + ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning + schemes.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} + +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD', +] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [('CMake', '3.1.0')] + +moduleclass = 'math' -- GitLab From 7859e2ee4c870dea9f48c4a8ed6faaabb1a1b372 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 22 Jan 2015 12:16:48 +0100 Subject: [PATCH 0415/1217] add easyconfig for libXp 1.0.2 with goolf/1.5.14 --- .../inputproto/inputproto-2.3-goolf-1.5.14.eb | 19 ++++ .../k/kbproto/kbproto-1.0.6-goolf-1.5.14.eb | 19 ++++ .../l/libX11/libX11-1.6.1-goolf-1.5.14.eb | 37 ++++++++ .../l/libXau/libXau-1.0.8-goolf-1.5.14.eb | 25 +++++ .../l/libXdmcp/libXdmcp-1.1.1-goolf-1.5.14.eb | 25 +++++ .../l/libXext/libXext-1.3.2-goolf-1.5.14.eb | 34 +++++++ .../l/libXp/libXp-1.0.2-goolf-1.5.14.eb | 30 ++++++ .../libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb | 35 +++++++ .../p/Python/Python-2.7.8-goolf-1.5.14.eb | 95 +++++++++++++++++++ .../printproto-1.0.5-goolf-1.5.14.eb | 19 ++++ ...xcb-proto-1.7-goolf-1.5.14-Python-2.7.8.eb | 27 ++++++ .../xextproto/xextproto-7.2.1-goolf-1.5.14.eb | 25 +++++ .../x/xproto/xproto-7.0.26-goolf-1.5.14.eb | 24 +++++ .../x/xtrans/xtrans-1.3.4-goolf-1.5.14.eb | 26 +++++ 14 files changed, 440 insertions(+) create mode 100644 easybuild/easyconfigs/i/inputproto/inputproto-2.3-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.5.14-Python-2.7.8.eb create mode 100644 easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/x/xproto/xproto-7.0.26-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-goolf-1.5.14.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-goolf-1.5.14.eb new file mode 100644 index 0000000000..56a7e864e0 --- /dev/null +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-goolf-1.5.14.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'inputproto' +version = '2.3' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org InputProto protocol headers.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in ['XI2.h', 'XI.h', 'XIproto.h', 'XI2proto.h']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-goolf-1.5.14.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-goolf-1.5.14.eb new file mode 100644 index 0000000000..9d5719533c --- /dev/null +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-goolf-1.5.14.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'kbproto' +version = '1.0.6' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org KBProto protocol headers.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in ['XKBgeom.h', 'XKB.h', 'XKBproto.h', 'XKBsrv.h', 'XKBstr.h']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.5.14.eb new file mode 100644 index 0000000000..1f3f05b34f --- /dev/null +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.5.14.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'libX11' +version = '1.6.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +pythonversion = '-Python-2.7.8' +builddependencies = [ + ('xextproto', '7.2.1'), + ('xcb-proto', '1.7', pythonversion), + ('kbproto', '1.0.6'), + ('inputproto', '2.3'), + ('xproto', '7.0.26'), +] + +dependencies = [ + ('libxcb', '1.8', pythonversion), + ('xtrans', '1.3.4'), +] + +sanity_check_paths = { + 'files': ['include/X11/%s' % x for x in [ + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.5.14.eb new file mode 100644 index 0000000000..e1924b4781 --- /dev/null +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.5.14.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libXau' +version = '1.0.8' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """The libXau package contains a library implementing the X11 Authorization Protocol. +This is useful for restricting client access to the display.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +dependencies = [ + ('xproto', '7.0.26'), +] + +sanity_check_paths = { + 'files': ['lib/%s' % x for x in ['libXau.a', 'libXau.so']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-goolf-1.5.14.eb new file mode 100644 index 0000000000..c63e8fb713 --- /dev/null +++ b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-goolf-1.5.14.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libXdmcp' +version = '1.1.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """The libXdmcp package contains a library implementing the X Display Manager Control Protocol. This is +useful for allowing clients to interact with the X Display Manager. +""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +builddependencies = [ + ('xproto', '7.0.26'), +] +sanity_check_paths = { + 'files': ['lib/%s' % x for x in ['%(name)s.a', '%(name)s.so']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.5.14.eb new file mode 100644 index 0000000000..730c692843 --- /dev/null +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.5.14.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'libXext' +version = '1.3.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """Common X Extensions library""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +dependencies = [ + ('libX11', '1.6.1'), + ('libXdmcp', '1.1.1'), +] + +builddependencies = [ + ('xproto','7.0.26'), + ('xextproto', '7.2.1'), +] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.5.14.eb new file mode 100644 index 0000000000..2b397002a4 --- /dev/null +++ b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.5.14.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'libXp' +version = '1.0.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """libXp provides the X print library.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('xextproto', '7.2.1'), + ('printproto', '1.0.5'), +] + +dependencies = [ + ('libX11', '1.6.1'), + ('libXext', '1.3.2'), + ('libXau', '1.0.8'), +] +sanity_check_paths = { + 'files': ['lib/%s' % x for x in ['libXp.a', 'libXp.so']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb new file mode 100644 index 0000000000..543b30f4e9 --- /dev/null +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'libxcb' +version = '1.8' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, + latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['libxcb-no-pthread-stubs.patch'] + +python = 'Python' +pyver = '2.7.8' +versionsuffix = '-%s-%s' % (python, pyver) +dependencies = [ + (python, pyver), + ('xcb-proto', '1.7', versionsuffix), +] + +preconfigopts = "rm -r aclocal.m4 configure Makefile.in ltmain.sh && ./autogen.sh && " + +sanity_check_paths = { + 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", + "-randr", "-record", "-render", "-res", "-screensaver", + "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", + "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'dirs': ['include/xcb', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb new file mode 100644 index 0000000000..df184b1c3e --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb @@ -0,0 +1,95 @@ +name = 'Python' +version = '2.7.8' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.8.1' +scipyversion = '0.14.0' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# libffi build in python is still broken, see http://bugs.python.org/issue4130 +patches = ['python-2.7_libffi-include-xmmintrin.patch'] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# order is important! +# Version updated 08/JULY/2014 +exts_list = [ + ('setuptools', '5.4.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '1.5.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.3', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-%s-mkl.patch' % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.9.1', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.20.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('dateutil', '2.2', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('paramiko', '1.14.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.5.14.eb b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.5.14.eb new file mode 100644 index 0000000000..b92c1df92c --- /dev/null +++ b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.5.14.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'printproto' +version = '1.0.5' + +homepage = 'http://xorg.freedesktop.org/' +description = """X.org PrintProto protocol headers.""" + +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sanity_check_paths = { + 'files': ['include/X11/extensions/Print.h', 'include/X11/extensions/Printstr.h'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.5.14-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.5.14-Python-2.7.8.eb new file mode 100644 index 0000000000..401760336f --- /dev/null +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.5.14-Python-2.7.8.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'xcb-proto' +version = '1.7' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, + latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +python = 'Python' +pyver = '2.7.8' +versionsuffix = '-%s-%s' % (python, pyver) +dependencies = [(python, pyver)] + +pyshortver = '.'.join(pyver.split('.')[0:2]) + +sanity_check_paths = { + 'files': ['lib/pkgconfig/xcb-proto.pc'], + 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.5.14.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.5.14.eb new file mode 100644 index 0000000000..6b4cef16fe --- /dev/null +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.5.14.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'xextproto' +version = '7.2.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """XExtProto protocol headers.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] + ], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-goolf-1.5.14.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-goolf-1.5.14.eb new file mode 100644 index 0000000000..a5635671e9 --- /dev/null +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-goolf-1.5.14.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'xproto' +version = '7.0.26' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "X protocol and ancillary headers" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs' : [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-goolf-1.5.14.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-goolf-1.5.14.eb new file mode 100644 index 0000000000..f6435d5d2b --- /dev/null +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-goolf-1.5.14.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'xtrans' +version = '1.3.4' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """xtrans includes a number of routines to make X implementations transport-independent; + at time of writing, it includes support for UNIX sockets, IPv4, IPv6, and DECnet. +""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +sanity_check_paths = { + 'files' : ['include/X11/Xtrans/%s' % x for x in [ + 'transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', + 'Xtranssock.c', 'Xtransutil.c' + ] + ], + 'dirs' : [] +} + +moduleclass = 'devel' -- GitLab From 7bdf12ff5adf13e2131dbd6c61b21c4ef2163d0b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 22 Jan 2015 12:40:37 +0100 Subject: [PATCH 0416/1217] add easyconfig for libXp 1.0.2 with intel/2015a --- .../inputproto/inputproto-2.3-intel-2015a.eb | 19 ++++++++++ .../k/kbproto/kbproto-1.0.6-intel-2015a.eb | 19 ++++++++++ .../l/libX11/libX11-1.6.1-intel-2015a.eb | 37 +++++++++++++++++++ .../l/libXau/libXau-1.0.8-intel-2015a.eb | 25 +++++++++++++ .../l/libXdmcp/libXdmcp-1.1.1-intel-2015a.eb | 25 +++++++++++++ .../l/libXext/libXext-1.3.2-intel-2015a.eb | 34 +++++++++++++++++ .../l/libXp/libXp-1.0.2-intel-2015a.eb | 30 +++++++++++++++ .../libxcb-1.8-intel-2015a-Python-2.7.8.eb | 35 ++++++++++++++++++ .../printproto-1.0.5-intel-2015a.eb | 19 ++++++++++ .../xcb-proto-1.7-intel-2015a-Python-2.7.8.eb | 27 ++++++++++++++ .../xextproto/xextproto-7.2.1-intel-2015a.eb | 25 +++++++++++++ .../x/xproto/xproto-7.0.26-intel-2015a.eb | 24 ++++++++++++ .../x/xtrans/xtrans-1.3.4-intel-2015a.eb | 26 +++++++++++++ 13 files changed, 345 insertions(+) create mode 100644 easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2015a.eb create mode 100644 easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libXp/libXp-1.0.2-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2015a-Python-2.7.8.eb create mode 100644 easybuild/easyconfigs/p/printproto/printproto-1.0.5-intel-2015a.eb create mode 100644 easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2015a-Python-2.7.8.eb create mode 100644 easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2015a.eb create mode 100644 easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2015a.eb diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2015a.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2015a.eb new file mode 100644 index 0000000000..0437a042db --- /dev/null +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2015a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'inputproto' +version = '2.3' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org InputProto protocol headers.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in ['XI2.h', 'XI.h', 'XIproto.h', 'XI2proto.h']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2015a.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2015a.eb new file mode 100644 index 0000000000..2d16cb0b13 --- /dev/null +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2015a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'kbproto' +version = '1.0.6' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org KBProto protocol headers.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in ['XKBgeom.h', 'XKB.h', 'XKBproto.h', 'XKBsrv.h', 'XKBstr.h']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2015a.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2015a.eb new file mode 100644 index 0000000000..70b695c73d --- /dev/null +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2015a.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'libX11' +version = '1.6.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +pythonversion = '-Python-2.7.8' +builddependencies = [ + ('xextproto', '7.2.1'), + ('xcb-proto', '1.7', pythonversion), + ('kbproto', '1.0.6'), + ('inputproto', '2.3'), + ('xproto', '7.0.26'), +] + +dependencies = [ + ('libxcb', '1.8', pythonversion), + ('xtrans', '1.3.4'), +] + +sanity_check_paths = { + 'files': ['include/X11/%s' % x for x in [ + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2015a.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2015a.eb new file mode 100644 index 0000000000..5deb59be94 --- /dev/null +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libXau' +version = '1.0.8' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """The libXau package contains a library implementing the X11 Authorization Protocol. +This is useful for restricting client access to the display.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +dependencies = [ + ('xproto', '7.0.26'), +] + +sanity_check_paths = { + 'files': ['lib/%s' % x for x in ['libXau.a', 'libXau.so']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2015a.eb b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2015a.eb new file mode 100644 index 0000000000..f1b75921a7 --- /dev/null +++ b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libXdmcp' +version = '1.1.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """The libXdmcp package contains a library implementing the X Display Manager Control Protocol. This is +useful for allowing clients to interact with the X Display Manager. +""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +builddependencies = [ + ('xproto', '7.0.26'), +] +sanity_check_paths = { + 'files': ['lib/%s' % x for x in ['%(name)s.a', '%(name)s.so']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2015a.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2015a.eb new file mode 100644 index 0000000000..b57d363d51 --- /dev/null +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2015a.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'libXext' +version = '1.3.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """Common X Extensions library""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +dependencies = [ + ('libX11', '1.6.1'), + ('libXdmcp', '1.1.1'), +] + +builddependencies = [ + ('xproto','7.0.26'), + ('xextproto', '7.2.1'), +] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-intel-2015a.eb b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-intel-2015a.eb new file mode 100644 index 0000000000..469ffffd9b --- /dev/null +++ b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-intel-2015a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'libXp' +version = '1.0.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """libXp provides the X print library.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('xextproto', '7.2.1'), + ('printproto', '1.0.5'), +] + +dependencies = [ + ('libX11', '1.6.1'), + ('libXext', '1.3.2'), + ('libXau', '1.0.8'), +] +sanity_check_paths = { + 'files': ['lib/%s' % x for x in ['libXp.a', 'libXp.so']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2015a-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2015a-Python-2.7.8.eb new file mode 100644 index 0000000000..3343368288 --- /dev/null +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2015a-Python-2.7.8.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'libxcb' +version = '1.8' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, + latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['libxcb-no-pthread-stubs.patch'] + +python = 'Python' +pyver = '2.7.8' +versionsuffix = '-%s-%s' % (python, pyver) +dependencies = [ + (python, pyver), + ('xcb-proto', '1.7', versionsuffix), +] + +preconfigopts = "rm -r aclocal.m4 configure Makefile.in ltmain.sh && ./autogen.sh && " + +sanity_check_paths = { + 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", + "-randr", "-record", "-render", "-res", "-screensaver", + "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", + "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'dirs': ['include/xcb', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-intel-2015a.eb b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-intel-2015a.eb new file mode 100644 index 0000000000..0e5bfb142c --- /dev/null +++ b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-intel-2015a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'printproto' +version = '1.0.5' + +homepage = 'http://xorg.freedesktop.org/' +description = """X.org PrintProto protocol headers.""" + +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'intel', 'version': '2015a'} + +sanity_check_paths = { + 'files': ['include/X11/extensions/Print.h', 'include/X11/extensions/Printstr.h'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2015a-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2015a-Python-2.7.8.eb new file mode 100644 index 0000000000..1a9784f1e8 --- /dev/null +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2015a-Python-2.7.8.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'xcb-proto' +version = '1.7' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, + latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'intel', 'version': '2015a'} + +python = 'Python' +pyver = '2.7.8' +versionsuffix = '-%s-%s' % (python, pyver) +dependencies = [(python, pyver)] + +pyshortver = '.'.join(pyver.split('.')[0:2]) + +sanity_check_paths = { + 'files': ['lib/pkgconfig/xcb-proto.pc'], + 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2015a.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2015a.eb new file mode 100644 index 0000000000..e1651c87e5 --- /dev/null +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'xextproto' +version = '7.2.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """XExtProto protocol headers.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] + ], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2015a.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2015a.eb new file mode 100644 index 0000000000..5c1117654b --- /dev/null +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'xproto' +version = '7.0.26' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "X protocol and ancillary headers" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs' : [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2015a.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2015a.eb new file mode 100644 index 0000000000..dc21e51c71 --- /dev/null +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2015a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'xtrans' +version = '1.3.4' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """xtrans includes a number of routines to make X implementations transport-independent; + at time of writing, it includes support for UNIX sockets, IPv4, IPv6, and DECnet. +""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +sanity_check_paths = { + 'files' : ['include/X11/Xtrans/%s' % x for x in [ + 'transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', + 'Xtranssock.c', 'Xtransutil.c' + ] + ], + 'dirs' : [] +} + +moduleclass = 'devel' -- GitLab From 24e4db05667a4aa49685cf8cc9509f5ac2205570 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 22 Jan 2015 13:18:30 +0100 Subject: [PATCH 0417/1217] add easyconfig for Qt 4.8.6 with intel/2015a --- .../g/GLib/GLib-2.40.0-intel-2015a.eb | 21 ++++++++++++++++++ .../g/gettext/gettext-0.19.2-intel-2015a.eb | 17 ++++++++++++++ .../l/libffi/libffi-3.1-intel-2015a.eb | 22 +++++++++++++++++++ .../easyconfigs/q/Qt/Qt-4.8.6-intel-2015a.eb | 19 ++++++++++++++++ 4 files changed, 79 insertions(+) create mode 100644 easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2015a.eb create mode 100644 easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/q/Qt/Qt-4.8.6-intel-2015a.eb diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2015a.eb b/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2015a.eb new file mode 100644 index 0000000000..6732978735 --- /dev/null +++ b/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2015a.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'GLib' +version = '2.40.0' + +homepage = 'http://www.gtk.org/' +description = """GLib is one of the base libraries of the GTK+ project""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://ftp.gnome.org/pub/gnome/sources/glib/%(version_major_minor)s/'] +sources = ['glib-%(version)s.tar.xz'] + +dependencies = [ + ('libffi', '3.1'), + ('gettext', '0.19.2'), +] +builddependencies = [('Python', '2.7.8')] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2015a.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2015a.eb new file mode 100644 index 0000000000..65626bf260 --- /dev/null +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2015a.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'gettext' +version = '0.19.2' + +homepage = 'http://www.gnu.org/software/gettext/' +description = """GNU `gettext' is an important step for the GNU Translation Project, as it is an asset on which we may +build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools +and documentation""" +toolchain = {'name': 'intel', 'version': '2015a'} # tweaked by EasyBuild (was: {'name': 'intel', 'version': '2014b'}) + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = '--without-emacs' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2015a.eb b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2015a.eb new file mode 100644 index 0000000000..389219f31a --- /dev/null +++ b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'libffi' +version = '3.1' + +homepage = 'http://sourceware.org/libffi/' +description = """The libffi library provides a portable, high level programming interface to various calling +conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" +toolchain = {'name': 'intel', 'version': '2015a'} # tweaked by EasyBuild (was: {'name': 'intel', 'version': '2014b'}) + +source_urls = [ + 'ftp://sourceware.org/pub/libffi/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', +] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['lib/libffi.%s' % SHLIB_EXT, 'lib/libffi.a'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.6-intel-2015a.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.6-intel-2015a.eb new file mode 100644 index 0000000000..aa253ef5eb --- /dev/null +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.6-intel-2015a.eb @@ -0,0 +1,19 @@ +name = 'Qt' +version = '4.8.6' + +homepage = 'http://qt-project.org/' +description = "Qt is a comprehensive cross-platform C++ application framework." + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [ + 'http://origin.releases.qt-project.org/qt4/source/', + 'http://master.qt-project.org/archive/qt/%(version_major_minor)s/%(version)s/' +] +sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] + +patches = ['Qt-4.8.6_icc-qUnused.patch'] + +dependencies = [('GLib', '2.40.0')] + +moduleclass = 'devel' -- GitLab From fcc14e706387fceba339add27ba207df86fe1883 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 22 Jan 2015 13:36:38 +0100 Subject: [PATCH 0418/1217] Fix remark for likwid --- easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a.eb b/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a.eb index 3cef22858a..63f25c7e42 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a.eb @@ -13,7 +13,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://ftp.fau.de/pub/likwid/'] skipsteps = ['configure'] -buildopts='CC="$CC" CFLAGS="$CFLAGS -std=c99"' +buildopts = 'CC="$CC" CFLAGS="$CFLAGS -std=c99"' installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { -- GitLab From f371e9711ed9f11698a454b774b181fc4e5a8bb0 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 22 Jan 2015 13:37:07 +0100 Subject: [PATCH 0419/1217] Added pinomp version of likwid --- .../likwid/likwid-3.1.3-intel-2015a-pinomp.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a-pinomp.eb diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a-pinomp.eb b/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a-pinomp.eb new file mode 100644 index 0000000000..40afa5ed6e --- /dev/null +++ b/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a-pinomp.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'likwid' +version = '3.1.3' +versionsuffix = '-pinomp' + +homepage = 'http://code.google.com/p/likwid/' +description = """Likwid stands for Like I knew what I am doing. This project contributes easy to use + command line tools for Linux to support programmers in developing high performance multi threaded programs.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://ftp.fau.de/pub/likwid/'] + +patches = ['pinomp-pthread-overload.patch'] + +skipsteps = ['configure'] +buildopts = 'CC="$CC" CFLAGS="$CFLAGS -std=c99"' +installopts = 'PREFIX=%(installdir)s' + +sanity_check_paths = { + 'files': ["bin/likwid-features", "bin/likwid-memsweeper", "bin/likwid-mpirun", "bin/likwid-perfctr", + "bin/likwid-perfscope", "bin/likwid-pin", "bin/likwid-powermeter", "bin/likwid-topology", + "lib/liblikwidpin.so", "lib/liblikwid.a"], + 'dirs': ["man/man1"] +} + +moduleclass = 'devel' -- GitLab From 29acf7df687fd0113b2b9e28290ffaf301d6c05a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 22 Jan 2015 13:49:09 +0100 Subject: [PATCH 0420/1217] include both lib and lib64 options in libffi sanity check --- easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb | 2 +- easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2015a.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb index 81f2d376c9..61d0b9f762 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb @@ -16,7 +16,7 @@ source_urls = [ sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['lib/libffi.%s' % SHLIB_EXT, 'lib/libffi.a'], + 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2015a.eb b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2015a.eb index 389219f31a..20e0d2ec2a 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2015a.eb @@ -15,7 +15,7 @@ source_urls = [ sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['lib/libffi.%s' % SHLIB_EXT, 'lib/libffi.a'], + 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], 'dirs': [], } -- GitLab From ee4b3ec77c363901e6dfd6bbde74576aed821b4c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 22 Jan 2015 13:50:01 +0100 Subject: [PATCH 0421/1217] include both lib and lib64 options in libffi sanity check --- easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb index 81f2d376c9..61d0b9f762 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014b.eb @@ -16,7 +16,7 @@ source_urls = [ sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['lib/libffi.%s' % SHLIB_EXT, 'lib/libffi.a'], + 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], 'dirs': [], } -- GitLab From b74122d8ea21fc148ab8d943cffa974d916f2dc2 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 22 Jan 2015 13:52:19 +0100 Subject: [PATCH 0422/1217] pinomp version of likwid does not work, removing --- .../likwid/likwid-3.1.3-intel-2015a-pinomp.eb | 29 ------------------- 1 file changed, 29 deletions(-) delete mode 100644 easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a-pinomp.eb diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a-pinomp.eb b/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a-pinomp.eb deleted file mode 100644 index 40afa5ed6e..0000000000 --- a/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a-pinomp.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'likwid' -version = '3.1.3' -versionsuffix = '-pinomp' - -homepage = 'http://code.google.com/p/likwid/' -description = """Likwid stands for Like I knew what I am doing. This project contributes easy to use - command line tools for Linux to support programmers in developing high performance multi threaded programs.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://ftp.fau.de/pub/likwid/'] - -patches = ['pinomp-pthread-overload.patch'] - -skipsteps = ['configure'] -buildopts = 'CC="$CC" CFLAGS="$CFLAGS -std=c99"' -installopts = 'PREFIX=%(installdir)s' - -sanity_check_paths = { - 'files': ["bin/likwid-features", "bin/likwid-memsweeper", "bin/likwid-mpirun", "bin/likwid-perfctr", - "bin/likwid-perfscope", "bin/likwid-pin", "bin/likwid-powermeter", "bin/likwid-topology", - "lib/liblikwidpin.so", "lib/liblikwid.a"], - 'dirs': ["man/man1"] -} - -moduleclass = 'devel' -- GitLab From a2ff4f58f819f79f20d2eb59540df93d278fe042 Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 22 Jan 2015 13:55:15 +0100 Subject: [PATCH 0423/1217] Using GCC CMake version rather than intel --- easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015b.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015b.eb b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015b.eb index 815da9d042..cc44b91b6e 100644 --- a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015b.eb +++ b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015b.eb @@ -17,6 +17,6 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -builddependencies = [('CMake', '3.1.0')] +builddependencies = [('CMake', '3.1.0', '-GCC-4.9.2', True)] moduleclass = 'math' -- GitLab From 587d4dfd750e9293a33b46099a652822c9637669 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 22 Jan 2015 13:58:47 +0100 Subject: [PATCH 0424/1217] include both lib and lib64 options in libffi sanity check (bis) --- easybuild/easyconfigs/l/libffi/libffi-3.1-goolf-1.5.14.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.1-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libffi/libffi-3.1-goolf-1.5.14.eb index e4b687848f..5f13eea056 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.1-goolf-1.5.14.eb @@ -15,7 +15,7 @@ source_urls = [ sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['lib/libffi.%s' % SHLIB_EXT, 'lib/libffi.a'], + 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], 'dirs': [], } -- GitLab From 314ba175c540a6f4185e49ff01280a5f64b32f5d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 22 Jan 2015 15:17:51 +0100 Subject: [PATCH 0425/1217] fix remarks --- easybuild/easyconfigs/g/gettext/gettext-0.19.2-goolf-1.5.14.eb | 3 ++- easybuild/easyconfigs/l/libffi/libffi-3.1-goolf-1.5.14.eb | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.2-goolf-1.5.14.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-goolf-1.5.14.eb index 9cd1cbcdb9..a1a642076c 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.19.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-goolf-1.5.14.eb @@ -7,7 +7,8 @@ homepage = 'http://www.gnu.org/software/gettext/' description = """GNU `gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation""" -toolchain = {'name': 'goolf', 'version': '1.5.14'} # tweaked by EasyBuild (was: {'name': 'intel', 'version': '2014b'}) + +toolchain = {'name': 'goolf', 'version': '1.5.14'} sources = [SOURCE_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.1-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libffi/libffi-3.1-goolf-1.5.14.eb index 5f13eea056..f44b4109bf 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.1-goolf-1.5.14.eb @@ -6,7 +6,8 @@ version = '3.1' homepage = 'http://sourceware.org/libffi/' description = """The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" -toolchain = {'name': 'goolf', 'version': '1.5.14'} # tweaked by EasyBuild (was: {'name': 'intel', 'version': '2014b'}) + +toolchain = {'name': 'goolf', 'version': '1.5.14'} source_urls = [ 'ftp://sourceware.org/pub/libffi/', -- GitLab From 506e99b75c39c1a25739dd9c0e52345d4256a72d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 22 Jan 2015 15:19:02 +0100 Subject: [PATCH 0426/1217] fix remarks --- easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2015a.eb | 3 ++- easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2015a.eb | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2015a.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2015a.eb index 65626bf260..c49302820d 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2015a.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2015a.eb @@ -7,7 +7,8 @@ homepage = 'http://www.gnu.org/software/gettext/' description = """GNU `gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation""" -toolchain = {'name': 'intel', 'version': '2015a'} # tweaked by EasyBuild (was: {'name': 'intel', 'version': '2014b'}) + +toolchain = {'name': 'intel', 'version': '2015a'} sources = [SOURCE_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2015a.eb b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2015a.eb index 20e0d2ec2a..96f55c01f8 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2015a.eb @@ -6,7 +6,8 @@ version = '3.1' homepage = 'http://sourceware.org/libffi/' description = """The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" -toolchain = {'name': 'intel', 'version': '2015a'} # tweaked by EasyBuild (was: {'name': 'intel', 'version': '2014b'}) + +toolchain = {'name': 'intel', 'version': '2015a'} source_urls = [ 'ftp://sourceware.org/pub/libffi/', -- GitLab From 96b75735cc08fd56fdef699d656899223bf28522 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Lopez Date: Thu, 22 Jan 2015 15:34:55 +0100 Subject: [PATCH 0427/1217] iomkl-2015.01 --- ...oc-1.10.0-iccifort-2015.1.133-GCC-4.9.2.eb | 20 ++++++++++ .../i/imkl/imkl-11.1.2.144-iompi-2015.01.eb | 21 ++++++++++ .../easyconfigs/i/iomkl/iomkl-2015.01.eb | 23 +++++++++++ .../easyconfigs/i/iompi/iompi-2015.01.eb | 21 ++++++++++ ...MPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb | 39 +++++++++++++++++++ 5 files changed, 124 insertions(+) create mode 100644 easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.1.133-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-iompi-2015.01.eb create mode 100644 easybuild/easyconfigs/i/iomkl/iomkl-2015.01.eb create mode 100644 easybuild/easyconfigs/i/iompi/iompi-2015.01.eb create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.1.133-GCC-4.9.2.eb new file mode 100644 index 0000000000..6adec23e71 --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.1.133-GCC-4.9.2.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.10.0' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'iccifort', 'version': '2015.1.133-GCC-4.9.2'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'system' + diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-iompi-2015.01.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-iompi-2015.01.eb new file mode 100644 index 0000000000..2559891bcc --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-iompi-2015.01.eb @@ -0,0 +1,21 @@ +name = 'imkl' +version = '11.1.2.144' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines +for science, engineering, and financial applications that require maximum performance. Core math functions include +BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iompi', 'version': '2015.01'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/iomkl/iomkl-2015.01.eb b/easybuild/easyconfigs/i/iomkl/iomkl-2015.01.eb new file mode 100644 index 0000000000..99018dea02 --- /dev/null +++ b/easybuild/easyconfigs/i/iomkl/iomkl-2015.01.eb @@ -0,0 +1,23 @@ +easyblock = "Toolchain" + +name = 'iomkl' +version = '2015.01' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2015.1.133-GCC-4.9.2' +comp = ('iccifort', compver) +ompi = 'OpenMPI' +ompiver = '1.8.4' + +dependencies = [ + ('icc', compver), + ('ifort', compver), + (ompi, ompiver, '', comp), + ('imkl', '11.1.2.144', '', ('iompi', version)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iompi/iompi-2015.01.eb b/easybuild/easyconfigs/i/iompi/iompi-2015.01.eb new file mode 100644 index 0000000000..42546adb88 --- /dev/null +++ b/easybuild/easyconfigs/i/iompi/iompi-2015.01.eb @@ -0,0 +1,21 @@ +easyblock = "Toolchain" + +name = 'iompi' +version = '2015.01' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Toolchain with Intel C, C++ and Fortran compilers, alongside OpenMPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2015.1.133-GCC-4.9.2' +comp = ('iccifort', compver) + +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('OpenMPI', '1.8.4', '', comp), +] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb new file mode 100644 index 0000000000..1e113d5dfd --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb @@ -0,0 +1,39 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.8.4' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'iccifort', 'version': '2015.1.133-GCC-4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +dependencies = [('hwloc', '1.10.0')] + +# needed for --with-openib +if OS_NAME in ['debian', 'ubuntu']: + osdependencies = ['libibverbs-dev'] +else: + # OK for OS_NAME == redhat, fedora, RHEL, SL, centos + osdependencies = ['libibverbs-devel'] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' -- GitLab From 82f7d70aa2447b3f38142915805efaddfdc48e48 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Lopez Date: Thu, 22 Jan 2015 16:34:39 +0100 Subject: [PATCH 0428/1217] added HPL easyconfig for test --- .../easyconfigs/h/HPL/HPL-2.1-iomkl-2015.01.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-iomkl-2015.01.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-iomkl-2015.01.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-iomkl-2015.01.eb new file mode 100644 index 0000000000..e2c8df3cc6 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-iomkl-2015.01.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'iomkl', 'version': '2015.01'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' -- GitLab From 2adefb368cb80c4f237ff48e14979f0eaa9a6e7c Mon Sep 17 00:00:00 2001 From: Pablo Escobar Lopez Date: Thu, 22 Jan 2015 22:16:29 +0100 Subject: [PATCH 0429/1217] some style fixes --- easybuild/easyconfigs/i/iomkl/iomkl-2015.01.eb | 5 +---- easybuild/easyconfigs/i/iompi/iompi-2015.01.eb | 3 +-- .../OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb | 6 +----- 3 files changed, 3 insertions(+), 11 deletions(-) diff --git a/easybuild/easyconfigs/i/iomkl/iomkl-2015.01.eb b/easybuild/easyconfigs/i/iomkl/iomkl-2015.01.eb index 99018dea02..aa85e82a98 100644 --- a/easybuild/easyconfigs/i/iomkl/iomkl-2015.01.eb +++ b/easybuild/easyconfigs/i/iomkl/iomkl-2015.01.eb @@ -9,14 +9,11 @@ description = """Intel Cluster Toolchain Compiler Edition provides Intel C/C++ a toolchain = {'name': 'dummy', 'version': 'dummy'} compver = '2015.1.133-GCC-4.9.2' -comp = ('iccifort', compver) -ompi = 'OpenMPI' -ompiver = '1.8.4' dependencies = [ ('icc', compver), ('ifort', compver), - (ompi, ompiver, '', comp), + ('OpenMPI', '1.8.4', '', ('iccifort', compver)), ('imkl', '11.1.2.144', '', ('iompi', version)), ] diff --git a/easybuild/easyconfigs/i/iompi/iompi-2015.01.eb b/easybuild/easyconfigs/i/iompi/iompi-2015.01.eb index 42546adb88..6392c4027f 100644 --- a/easybuild/easyconfigs/i/iompi/iompi-2015.01.eb +++ b/easybuild/easyconfigs/i/iompi/iompi-2015.01.eb @@ -9,12 +9,11 @@ description = """Toolchain with Intel C, C++ and Fortran compilers, alongside Op toolchain = {'name': 'dummy', 'version': 'dummy'} compver = '2015.1.133-GCC-4.9.2' -comp = ('iccifort', compver) dependencies = [ ('icc', compver), ('ifort', compver), - ('OpenMPI', '1.8.4', '', comp), + ('OpenMPI', '1.8.4', '', ('iccifort', compver)), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb index 1e113d5dfd..43c4c3d031 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb @@ -20,11 +20,7 @@ configopts += '--disable-dlopen ' # statically link component, don't do dynamic dependencies = [('hwloc', '1.10.0')] # needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + -- GitLab From f03619b2b01ad1fb34ff6c5393ade18112004d85 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Fri, 23 Jan 2015 09:02:13 +0100 Subject: [PATCH 0430/1217] drop comp variable Signed-off-by: Fotis Georgatos --- ...APACK-2.0.2-gompi-1.6.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb | 6 +----- 1 file changed, 1 insertion(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.6.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.6.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb index 3931fb0ef3..7c911189b3 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.6.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.6.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb @@ -11,17 +11,13 @@ toolchainopts = {'pic': True} source_urls = [homepage] sources = [SOURCELOWER_TGZ] -comp_name = 'GCC' -comp_version = '4.8.4' -comp = (comp_name, comp_version) - blaslib = 'OpenBLAS' blasver = '0.2.13' blassuff = '-LAPACK-3.5.0' versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) -dependencies = [(blaslib, blasver, blassuff, comp)] +dependencies = [(blaslib, blasver, blassuff, ('GCC', '4.8.4'))] ## parallel build tends to fail, so disabling it parallel = 1 -- GitLab From d7bb89816cbf876d700f1ef516097edccdf6be52 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Fri, 23 Jan 2015 09:27:35 +0100 Subject: [PATCH 0431/1217] bump in favor of numactl-2.0.10 Signed-off-by: Fotis Georgatos --- .../a/Autoconf/Autoconf-2.69-GCC-4.8.4.eb | 26 +++++++++++++++ .../a/Automake/Automake-1.15-GCC-4.8.4.eb | 33 +++++++++++++++++++ .../h/hwloc/hwloc-1.10.0-GCC-4.8.4.eb | 2 +- .../l/libtool/libtool-2.4.2-GCC-4.8.4.eb | 15 +++++++++ .../easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb | 23 +++++++++++++ .../n/numactl/numactl-2.0.10-GCC-4.8.4.eb | 31 +++++++++++++++++ 6 files changed, 129 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.4.eb create mode 100644 easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb create mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.4.eb create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb create mode 100644 easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.4.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.4.eb new file mode 100644 index 0000000000..2dc3403799 --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.8.4.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can adapt the + packages to many kinds of UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template file that lists the + operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", + "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb new file mode 100644 index 0000000000..bf119a1eaf --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.8.4.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.8.4.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.8.4.eb index 2d5251f89c..48456705b1 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.8.4.eb @@ -13,7 +13,7 @@ description = """The Portable Hardware Locality (hwloc) software package provide toolchain = {'name': 'GCC', 'version': '4.8.4'} -dependencies = [('numactl', '2.0.9')] +dependencies = [('numactl', '2.0.10')] configopts = "--enable-libnuma=$EBROOTNUMACTL" diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.4.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.4.eb new file mode 100644 index 0000000000..82d1212976 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.4.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.2' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb new file mode 100644 index 0000000000..90c7eb9017 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.8.4.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb new file mode 100644 index 0000000000..4e761b0ac5 --- /dev/null +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'numactl' +version = '2.0.10' + +checksums = ['682c38305b2596967881f3d77bc3fc9c'] + +homepage = 'http://oss.sgi.com/projects/libnuma/' +description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. + It does this by supplying a NUMA memory policy to the operating system before running your program. + The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] +sources = [SOURCE_TAR_GZ] + +builddependencies = [ + ('Automake', '1.15'), + ('libtool', '2.4.2'), +] + +preconfigopts = './autogen.sh && ' + + +sanity_check_paths = { + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} + +moduleclass = 'tools' -- GitLab From 8506833708dcc67a2d5732ce95ad8f286e56e457 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 23 Jan 2015 14:46:06 +0100 Subject: [PATCH 0432/1217] fix remarks --- .../a/Autoconf/Autoconf-2.69-goolf-1.5.14.eb | 25 ++++++++++++++ .../a/Automake/Automake-1.14-goolf-1.5.14.eb | 33 +++++++++++++++++++ .../k/kbproto/kbproto-1.0.6-goolf-1.5.14.eb | 2 +- .../l/libX11/libX11-1.6.1-goolf-1.5.14.eb | 2 +- .../libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb | 5 +++ .../printproto-1.0.5-goolf-1.5.14.eb | 6 ++-- ...xcb-proto-1.7-goolf-1.5.14-Python-2.7.8.eb | 4 +-- 7 files changed, 70 insertions(+), 7 deletions(-) create mode 100644 easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/a/Automake/Automake-1.14-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.5.14.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.5.14.eb new file mode 100644 index 0000000000..3ca1111122 --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.5.14.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure + software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual + user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating + system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.16')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", + "autoscan", "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-goolf-1.5.14.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-goolf-1.5.14.eb new file mode 100644 index 0000000000..64606d8726 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.14-goolf-1.5.14.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.14" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-goolf-1.5.14.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-goolf-1.5.14.eb index 9d5719533c..1b4c06dfef 100644 --- a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-goolf-1.5.14.eb @@ -9,7 +9,7 @@ description = """X.org KBProto protocol headers.""" toolchain = {'name': 'goolf', 'version': '1.5.14'} sources = [SOURCE_TAR_GZ] -source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] +source_urls = [XORG_PROTO_SOURCE] sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in ['XKBgeom.h', 'XKB.h', 'XKBproto.h', 'XKBsrv.h', 'XKBstr.h']], diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.5.14.eb index 1f3f05b34f..09434cd3d2 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.5.14.eb @@ -9,7 +9,7 @@ description = """X11 client-side library""" toolchain = {'name': 'goolf', 'version': '1.5.14'} sources = [SOURCE_TAR_GZ] -source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] +source_urls = [XORG_LIB_SOURCE] pythonversion = '-Python-2.7.8' builddependencies = [ diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb index 543b30f4e9..17ee8c1cb5 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb @@ -14,6 +14,11 @@ sources = [SOURCELOWER_TAR_GZ] patches = ['libxcb-no-pthread-stubs.patch'] +builddependencies = [ + ('Automake', '1.14'), + ('Autoconf', '2.69'), +] + python = 'Python' pyver = '2.7.8' versionsuffix = '-%s-%s' % (python, pyver) diff --git a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.5.14.eb b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.5.14.eb index b92c1df92c..c81ebb4993 100644 --- a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.5.14.eb @@ -6,11 +6,11 @@ version = '1.0.5' homepage = 'http://xorg.freedesktop.org/' description = """X.org PrintProto protocol headers.""" -source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] -sources = [SOURCELOWER_TAR_GZ] - toolchain = {'name': 'goolf', 'version': '1.5.14'} +source_urls = [XORG_PROTO_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + sanity_check_paths = { 'files': ['include/X11/extensions/Print.h', 'include/X11/extensions/Printstr.h'], 'dirs': [] diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.5.14-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.5.14-Python-2.7.8.eb index 401760336f..2c38355a2b 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.5.14-Python-2.7.8.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.5.14-Python-2.7.8.eb @@ -7,11 +7,11 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" +toolchain = {'name': 'goolf', 'version': '1.5.14'} + source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] -toolchain = {'name': 'goolf', 'version': '1.5.14'} - python = 'Python' pyver = '2.7.8' versionsuffix = '-%s-%s' % (python, pyver) -- GitLab From a75b92a2b46a355018fa280bc208dba97ea9f100 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 23 Jan 2015 14:52:53 +0100 Subject: [PATCH 0433/1217] added multitail --- .../m/multitail/fix_makefile.patch | 22 ++++++++++++++ .../multitail/multitail-6.2.1-intel-2015a.eb | 30 +++++++++++++++++++ 2 files changed, 52 insertions(+) create mode 100644 easybuild/easyconfigs/m/multitail/fix_makefile.patch create mode 100644 easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb diff --git a/easybuild/easyconfigs/m/multitail/fix_makefile.patch b/easybuild/easyconfigs/m/multitail/fix_makefile.patch new file mode 100644 index 0000000000..d653b43e6a --- /dev/null +++ b/easybuild/easyconfigs/m/multitail/fix_makefile.patch @@ -0,0 +1,22 @@ +diff -ur multitail-6.2.1.orig/Makefile multitail-6.2.1/Makefile +--- multitail-6.2.1.orig/Makefile 2014-02-16 15:06:54.000000000 +0100 ++++ multitail-6.2.1/Makefile 2015-01-23 14:02:43.704383230 +0100 +@@ -1,14 +1,14 @@ + include version + + UTF8_SUPPORT=yes +-DESTDIR=/ ++DESTDIR:=$(DESTDIR) + CONFIG_FILE=$(DESTDIR)/etc/multitail.conf + +-CC=gcc ++CC:=$(CC) + DEBUG=-g -D_FORTIFY_SOURCE=2 # -D_DEBUG # -pg # -D_DEBUG #-pg -W -pedantic # -pg #-fprofile-arcs + ifeq ($(UTF8_SUPPORT),yes) +-LDFLAGS+=-lpanelw -lncursesw -lutil -lm $(DEBUG) -rdynamic +-CFLAGS+=-funsigned-char -D`uname` -O2 -Wall -DVERSION=\"$(VERSION)\" $(DEBUG) -DCONFIG_FILE=\"$(CONFIG_FILE)\" -DUTF8_SUPPORT ++LDFLAGS:= $(LDFLAGS) -lpanelw -lncursesw -lutil -lm $(DEBUG) -rdynamic ++CFLAGS:= $(CFLAGS) -funsigned-char -D`uname` -O2 -Wall -DVERSION=\"$(VERSION)\" $(DEBUG) -DCONFIG_FILE=\"$(CONFIG_FILE)\" -DUTF8_SUPPORT + else + LDFLAGS+=-lpanel -lncurses -lutil -lm $(DEBUG) -rdynamic + CFLAGS+=-funsigned-char -D`uname` -O2 -Wall -DVERSION=\"$(VERSION)\" $(DEBUG) -DCONFIG_FILE=\"$(CONFIG_FILE)\" diff --git a/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb b/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb new file mode 100644 index 0000000000..784dea8301 --- /dev/null +++ b/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb @@ -0,0 +1,30 @@ +easyblock = 'MakeCp' + +name = 'multitail' +version = '6.2.1' + +homepage = 'http://www.vanheusden.com/multitail/' +description = """ MultiTail allows you to monitor logfiles and command output in multiple windows in a terminal, colorize, filter and merge.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TGZ] +source_urls = ['http://www.vanheusden.com/multitail/'] + +patches = ['fix_makefile.patch'] + +files_to_copy = [ +(['multitail'], 'bin'), +(['multitail.conf'], 'etc'), +] + +prebuildopts = 'DESTDIR=%(installdir)s ' + +dependencies = [("ncurses", "5.9")] + +sanity_check_paths = { + 'files': [], + 'dirs': ["."] +} + +moduleclass = 'tools' -- GitLab From 440de00676b80590f421822284b75a92f83ba5ba Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 23 Jan 2015 14:53:22 +0100 Subject: [PATCH 0434/1217] Added: sanity check to mulitail --- .../easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb b/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb index 784dea8301..e4beeeb18c 100644 --- a/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb @@ -23,7 +23,7 @@ prebuildopts = 'DESTDIR=%(installdir)s ' dependencies = [("ncurses", "5.9")] sanity_check_paths = { - 'files': [], + 'files': ['bin/multitail'], 'dirs': ["."] } -- GitLab From 57bf449dce0f26eda545d1c2f719bf8cfd6e9802 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 23 Jan 2015 14:55:08 +0100 Subject: [PATCH 0435/1217] Added note to patch --- easybuild/easyconfigs/m/multitail/fix_makefile.patch | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/m/multitail/fix_makefile.patch b/easybuild/easyconfigs/m/multitail/fix_makefile.patch index d653b43e6a..865d3b244b 100644 --- a/easybuild/easyconfigs/m/multitail/fix_makefile.patch +++ b/easybuild/easyconfigs/m/multitail/fix_makefile.patch @@ -1,3 +1,5 @@ +# Use the settings from easybuild +# by wpoely86@gmail.com diff -ur multitail-6.2.1.orig/Makefile multitail-6.2.1/Makefile --- multitail-6.2.1.orig/Makefile 2014-02-16 15:06:54.000000000 +0100 +++ multitail-6.2.1/Makefile 2015-01-23 14:02:43.704383230 +0100 -- GitLab From acc6edaafde205b51d9cf70b7124f6c06dbd0273 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 23 Jan 2015 15:13:33 +0100 Subject: [PATCH 0436/1217] Added intel easyconfig for SuiteSparse --- .../SuiteSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb index 4b14e1c797..861109ce91 100644 --- a/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb +++ b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb @@ -7,9 +7,11 @@ description = """SuiteSparse is a collection of libraries manipulate sparse matr toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'opt': True, 'unroll': True, 'pic': True, 'static': True} -source_urls = ['http://www.cise.ufl.edu/research/sparse/SuiteSparse/'] +source_urls = ['http://faculty.cse.tamu.edu/davis/SuiteSparse/'] sources = [SOURCE_TAR_GZ] +maxparallel = 1 + parmetis = 'ParMETIS' parmetis_ver = '4.0.3' versionsuffix = '-%s-%s' % (parmetis, parmetis_ver) -- GitLab From 7701b79c970c4dd613011e21b183e50901635395 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 23 Jan 2015 15:41:40 +0100 Subject: [PATCH 0437/1217] Added GCC easyconfig for GDB --- .../easyconfigs/g/GDB/GDB-7.8.2-GCC-4.9.2.eb | 23 +++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/g/GDB/GDB-7.8.2-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.8.2-GCC-4.9.2.eb b/easybuild/easyconfigs/g/GDB/GDB-7.8.2-GCC-4.9.2.eb new file mode 100644 index 0000000000..88f5913bb0 --- /dev/null +++ b/easybuild/easyconfigs/g/GDB/GDB-7.8.2-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'GDB' +version = '7.8.2' + +homepage = 'http://www.gnu.org/software/gdb/gdb.html' +description = "The GNU Project Debugger" + +sources = [SOURCELOWER_TAR_XZ] +source_urls = [GNU_SOURCE] + +toolchain = {'name': 'intel', 'version': '2015a'} + +dependencies = [('ncurses', '5.9')] + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/gdb', 'bin/gdbserver'], + 'dirs': [], +} + +moduleclass = 'debugger' -- GitLab From 73a3a3598f76f2c12ac328b0957dbc0c089bd279 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 23 Jan 2015 16:49:47 +0100 Subject: [PATCH 0438/1217] add easyconfig for WRF 3.6.1 with intel/2015a --- .../c/CMake/CMake-3.0.0-intel-2015a.eb | 22 ++++++++++ .../c/cURL/cURL-7.37.1-intel-2015a.eb | 27 +++++++++++++ .../d/Doxygen/Doxygen-1.8.7-intel-2015a.eb | 18 +++++++++ .../h/HDF5/HDF5-1.8.13-intel-2015a.eb | 26 ++++++++++++ .../j/JasPer/JasPer-1.900.1-intel-2015a.eb | 20 ++++++++++ .../netCDF-Fortran-4.4.0-intel-2015a.eb | 18 +++++++++ .../n/netCDF/netCDF-4.3.2-intel-2015a.eb | 31 ++++++++++++++ .../w/WRF/WRF-3.6.1-intel-2015a-dmpar.eb | 40 +++++++++++++++++++ 8 files changed, 202 insertions(+) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2015a.eb create mode 100644 easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.7-intel-2015a.eb create mode 100644 easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015a.eb create mode 100644 easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.0-intel-2015a.eb create mode 100644 easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-intel-2015a.eb create mode 100644 easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2015a-dmpar.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2015a.eb b/easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2015a.eb new file mode 100644 index 0000000000..82fcafc057 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.0.0' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2015a.eb new file mode 100644 index 0000000000..044a3da83e --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2015a.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.37.1' + +homepage = 'http://curl.haxx.se' +description = """libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, + POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports + SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, + proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, + Kerberos), file transfer resume, http proxy tunneling and more.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://curl.haxx.se/download/'] + +#dependencies = [('OpenSSL', '1.0.1i')] # OS dependency should be preferred for security reasons +osdependencies = [('openssl-devel', 'libssl-dev')] + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.7-intel-2015a.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.7-intel-2015a.eb new file mode 100644 index 0000000000..dc83824bc9 --- /dev/null +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.7-intel-2015a.eb @@ -0,0 +1,18 @@ +name = 'Doxygen' +version = '1.8.7' + +homepage = 'http://www.doxygen.org' +description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, + IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = ['%(namelower)s-%(version)s.src.tar.gz'] +source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.2'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015a.eb new file mode 100644 index 0000000000..16f7a03776 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015a.eb @@ -0,0 +1,26 @@ +name = 'HDF5' +version = '1.8.13' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5-%(version)s_configure_intel.patch', + 'configure_libtool.patch', +] + +buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' + +dependencies = [ + ('zlib', '1.2.8'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2015a.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2015a.eb new file mode 100644 index 0000000000..42630d7d0a --- /dev/null +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2015a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'JasPer' +version = '1.900.1' + +homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' +description = """The JasPer Project is an open-source initiative to provide a free + software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" +toolchain = {'name': 'intel', 'version': '2015a'} # tweaked by EasyBuild (was: {'name': 'intel', 'version': '2014b'}) +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_ZIP] +source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] + +sanity_check_paths = { + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.0-intel-2015a.eb b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.0-intel-2015a.eb new file mode 100644 index 0000000000..df1a839166 --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.0-intel-2015a.eb @@ -0,0 +1,18 @@ +name = 'netCDF-Fortran' +version = '4.4.0' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.unidata.ucar.edu/downloads/netcdf/ftp/'] + +dependencies = [('netCDF', '4.3.2')] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-intel-2015a.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-intel-2015a.eb new file mode 100644 index 0000000000..bb04604455 --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-intel-2015a.eb @@ -0,0 +1,31 @@ +name = 'netCDF' +version = '4.3.2' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.unidata.ucar.edu/downloads/netcdf/ftp/'] + +patches = ['netCDF-4.3.2-with-HDF-1.8.13.patch'] + +dependencies = [('HDF5', '1.8.13')] + +builddependencies = [ + ('CMake', '3.0.0'), + ('Doxygen', '1.8.7'), + ('cURL', '7.37.1'), +] + +# make sure both static and shared libs are built +configopts = [ + "-DCURL_LIBRARY=$EBROOTCURL/lib/libcurl.so -DCURL_INCLUDE_DIR=$EBROOTCURL/include -DBUILD_SHARED_LIBS=ON", + "-DCURL_LIBRARY=$EBROOTCURL/lib/libcurl.so -DCURL_INCLUDE_DIR=$EBROOTCURL/include -DBUILD_SHARED_LIBS=OFF", +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2015a-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2015a-dmpar.eb new file mode 100644 index 0000000000..c387f25407 --- /dev/null +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-intel-2015a-dmpar.eb @@ -0,0 +1,40 @@ +name = 'WRF' +version = '3.6.1' + +homepage = 'http://www.wrf-model.org' +description = """The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale + numerical weather prediction system designed to serve both operational forecasting and atmospheric + research needs.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 + +sources = ['%(name)sV%(version)s.TAR.gz'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] + +# csh is used by WRF install scripts +builddependencies = [('tcsh', '6.18.01')] + +dependencies = [ + ('JasPer', '1.900.1'), + ('netCDF', '4.3.2'), + ('netCDF-Fortran', '4.4.0'), +] + +patches = [ + 'WRF_parallel_build_fix.patch', + 'WRF-3.6.1_netCDF-Fortran_separate_path.patch', + 'WRF-3.6.1_known_problems.patch', + 'WRF_tests_limit-runtimes.patch', +] + +# limit parallel build to 20 +maxparallel = 20 + +buildtype = "dmpar" +versionsuffix = '-%s' % buildtype + +moduleclass = 'geo' -- GitLab From af8ce19b2ce0ae261e1b96624d8495cb939c5db7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 23 Jan 2015 16:55:04 +0100 Subject: [PATCH 0439/1217] add libtool build dep in libxcb easyconfig --- .../l/libtool/libtool-2.4.5-goolf-1.5.14.eb | 15 +++++++++++++++ .../libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb | 1 + 2 files changed, 16 insertions(+) create mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.5-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-goolf-1.5.14.eb new file mode 100644 index 0000000000..28e63562d7 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-goolf-1.5.14.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.5' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://ftp.gnu.org/gnu/%s' % name.lower()] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb index 17ee8c1cb5..91991fe021 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb @@ -17,6 +17,7 @@ patches = ['libxcb-no-pthread-stubs.patch'] builddependencies = [ ('Automake', '1.14'), ('Autoconf', '2.69'), + ('libtool', '2.4.5'), ] python = 'Python' -- GitLab From ae4a0c40574061b34940430b50b0374244f2bd8b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 23 Jan 2015 16:56:02 +0100 Subject: [PATCH 0440/1217] add missing tcsh easyconfig as dep for WRF --- .../t/tcsh/tcsh-6.18.01-intel-2015a.eb | 38 +++++++++++++++++++ 1 file changed, 38 insertions(+) create mode 100644 easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2015a.eb diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2015a.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2015a.eb new file mode 100644 index 0000000000..747d099188 --- /dev/null +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-intel-2015a.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit +# Authors:: Valentin Plugaru +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html +## +easyblock = 'ConfigureMake' + +name = 'tcsh' +version = '6.18.01' + +homepage = 'http://www.tcsh.org' +description = """Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). + It is a command language interpreter usable both as an interactive login shell and a shell script command + processor. It includes a command-line editor, programmable word completion, spelling correction, a history + mechanism, job control and a C-like syntax.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'ftp://ftp.astron.com/pub/%(namelower)s', + 'ftp://ftp.astron.com/pub/%(namelower)s/old', +] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/tcsh"], + 'dirs': [] +} + +moduleclass = 'tools' -- GitLab From 468a0e1e41c25ec1e10664a3598d3bf3ac086091 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 23 Jan 2015 17:00:54 +0100 Subject: [PATCH 0441/1217] add M4 as build dep for libtool --- .../l/libtool/libtool-2.4.5-goolf-1.5.14.eb | 2 ++ .../m/M4/M4-1.4.17-goolf-1.5.14.eb | 23 +++++++++++++++++++ 2 files changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.17-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-goolf-1.5.14.eb index 28e63562d7..89de693e51 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-goolf-1.5.14.eb @@ -12,4 +12,6 @@ toolchain = {'name': 'goolf', 'version': '1.5.14'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://ftp.gnu.org/gnu/%s' % name.lower()] +builddependencies = [('M4', '1.14.17')] + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-goolf-1.5.14.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-goolf-1.5.14.eb new file mode 100644 index 0000000000..39d957f556 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-goolf-1.5.14.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From e2dc1907d6ec6ee1a3cfa7e7f5baaf430242496f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 23 Jan 2015 17:03:13 +0100 Subject: [PATCH 0442/1217] fix typo --- easybuild/easyconfigs/l/libtool/libtool-2.4.5-goolf-1.5.14.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-goolf-1.5.14.eb index 89de693e51..c98f951ee7 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-goolf-1.5.14.eb @@ -12,6 +12,6 @@ toolchain = {'name': 'goolf', 'version': '1.5.14'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://ftp.gnu.org/gnu/%s' % name.lower()] -builddependencies = [('M4', '1.14.17')] +builddependencies = [('M4', '1.4.17')] moduleclass = 'lib' -- GitLab From b29994cb3b0017d479e823fb19c464cfbd441a13 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 23 Jan 2015 17:08:13 +0100 Subject: [PATCH 0443/1217] add M4 as build dep for libxcb --- .../easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb index 91991fe021..497d6bc032 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb @@ -15,6 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] patches = ['libxcb-no-pthread-stubs.patch'] builddependencies = [ + ('M4', '1.4.17'), ('Automake', '1.14'), ('Autoconf', '2.69'), ('libtool', '2.4.5'), -- GitLab From 8a5b01dad957bb61ed614cb1477898179951b7eb Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 23 Jan 2015 17:10:11 +0100 Subject: [PATCH 0444/1217] Fix remarks for multitail --- ...akefile.patch => multitail-6-fix_makefile.patch} | 4 ++-- .../m/multitail/multitail-6.2.1-intel-2015a.eb | 13 +++++++------ 2 files changed, 9 insertions(+), 8 deletions(-) rename easybuild/easyconfigs/m/multitail/{fix_makefile.patch => multitail-6-fix_makefile.patch} (81%) diff --git a/easybuild/easyconfigs/m/multitail/fix_makefile.patch b/easybuild/easyconfigs/m/multitail/multitail-6-fix_makefile.patch similarity index 81% rename from easybuild/easyconfigs/m/multitail/fix_makefile.patch rename to easybuild/easyconfigs/m/multitail/multitail-6-fix_makefile.patch index 865d3b244b..a02e029097 100644 --- a/easybuild/easyconfigs/m/multitail/fix_makefile.patch +++ b/easybuild/easyconfigs/m/multitail/multitail-6-fix_makefile.patch @@ -17,8 +17,8 @@ diff -ur multitail-6.2.1.orig/Makefile multitail-6.2.1/Makefile ifeq ($(UTF8_SUPPORT),yes) -LDFLAGS+=-lpanelw -lncursesw -lutil -lm $(DEBUG) -rdynamic -CFLAGS+=-funsigned-char -D`uname` -O2 -Wall -DVERSION=\"$(VERSION)\" $(DEBUG) -DCONFIG_FILE=\"$(CONFIG_FILE)\" -DUTF8_SUPPORT -+LDFLAGS:= $(LDFLAGS) -lpanelw -lncursesw -lutil -lm $(DEBUG) -rdynamic -+CFLAGS:= $(CFLAGS) -funsigned-char -D`uname` -O2 -Wall -DVERSION=\"$(VERSION)\" $(DEBUG) -DCONFIG_FILE=\"$(CONFIG_FILE)\" -DUTF8_SUPPORT ++LDFLAGS:= $(LDFLAGS) -lpanelw -lncursesw -lutil -lm $(DEBUG) ++CFLAGS:= -funsigned-char -D`uname` -Wall -DVERSION=\"$(VERSION)\" $(DEBUG) -DCONFIG_FILE=\"$(CONFIG_FILE)\" -DUTF8_SUPPORT $(CFLAGS) else LDFLAGS+=-lpanel -lncurses -lutil -lm $(DEBUG) -rdynamic CFLAGS+=-funsigned-char -D`uname` -O2 -Wall -DVERSION=\"$(VERSION)\" $(DEBUG) -DCONFIG_FILE=\"$(CONFIG_FILE)\" diff --git a/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb b/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb index e4beeeb18c..5b3f4e2bbe 100644 --- a/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb @@ -4,24 +4,25 @@ name = 'multitail' version = '6.2.1' homepage = 'http://www.vanheusden.com/multitail/' -description = """ MultiTail allows you to monitor logfiles and command output in multiple windows in a terminal, colorize, filter and merge.""" +description = """MultiTail allows you to monitor logfiles and command +output in multiple windows in a terminal, colorize, filter and merge.""" toolchain = {'name': 'intel', 'version': '2015a'} sources = [SOURCE_TGZ] source_urls = ['http://www.vanheusden.com/multitail/'] -patches = ['fix_makefile.patch'] +patches = ['multitail-6-fix_makefile.patch'] files_to_copy = [ -(['multitail'], 'bin'), -(['multitail.conf'], 'etc'), + (['multitail'], 'bin'), + (['multitail.conf'], 'etc'), ] -prebuildopts = 'DESTDIR=%(installdir)s ' - dependencies = [("ncurses", "5.9")] +prebuildopts = 'DESTDIR=%(installdir)s ' + sanity_check_paths = { 'files': ['bin/multitail'], 'dirs': ["."] -- GitLab From ff9fb731b450ea57d41cec155c1ed27deee9de0d Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 23 Jan 2015 17:13:38 +0100 Subject: [PATCH 0445/1217] Enable UTF-8 in ncurses --- easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb | 3 +++ 1 file changed, 3 insertions(+) diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb index 3bcfd50e3f..52d037a115 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb @@ -12,4 +12,7 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] +# enable UTF-8 version of ncurses +configopts = '--enable-widec ' + moduleclass = 'devel' -- GitLab From b6f3c16f0bfb068fc2e232c50c3b4a561a15f15a Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 23 Jan 2015 17:52:00 +0100 Subject: [PATCH 0446/1217] Build libncurses and libncursesw --- easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb index 52d037a115..0cd975654f 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb @@ -12,7 +12,7 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] -# enable UTF-8 version of ncurses -configopts = '--enable-widec ' +# build the normal library and the UTF-8 version +configopts = ['', '--enable-widec '] moduleclass = 'devel' -- GitLab From 0132061bf48ee5eb7df11de3f479444977078716 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 23 Jan 2015 18:52:35 +0100 Subject: [PATCH 0447/1217] style fixes --- easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2015a.eb | 3 ++- .../n/netCDF-Fortran/netCDF-Fortran-4.4.0-intel-2015a.eb | 1 - 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2015a.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2015a.eb index 42630d7d0a..dfa13f7e36 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2015a.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2015a.eb @@ -6,7 +6,8 @@ version = '1.900.1' homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' description = """The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" -toolchain = {'name': 'intel', 'version': '2015a'} # tweaked by EasyBuild (was: {'name': 'intel', 'version': '2014b'}) + +toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'pic': True} sources = [SOURCELOWER_ZIP] diff --git a/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.0-intel-2015a.eb b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.0-intel-2015a.eb index df1a839166..ed31b043f1 100644 --- a/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.0-intel-2015a.eb +++ b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.4.0-intel-2015a.eb @@ -6,7 +6,6 @@ description = """NetCDF (network Common Data Form) is a set of software librarie and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.""" - toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'pic': True} -- GitLab From 41f99af1b88ca6dfdaf4d57d57ed771632e77993 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Fri, 23 Jan 2015 22:35:49 +0200 Subject: [PATCH 0448/1217] bump as default target Lmod/5.8.4 Signed-off-by: Fotis Georgatos --- .../l/Lmod/Lmod-5.8.4-GCC-4.8.2.eb | 27 +++++++++++++++++++ easybuild/easyconfigs/l/Lmod/README.rst | 5 ++-- easybuild/easyconfigs/l/Lmod/sourceme | 4 +-- 3 files changed, 32 insertions(+), 4 deletions(-) create mode 100644 easybuild/easyconfigs/l/Lmod/Lmod-5.8.4-GCC-4.8.2.eb diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.8.4-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.8.4-GCC-4.8.2.eb new file mode 100644 index 0000000000..6ba5681703 --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.8.4-GCC-4.8.2.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = "Lmod" +version = "5.8.4" + +homepage = "http://sourceforge.net/projects/lmod/" +description = """Lmod is a Lua based module system. Modules allow for dynamic modification + of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod + for a complete description. Lmod is a new implementation that easily handles the MODULEPATH + Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCE_TAR_BZ2] +source_urls = [ + 'http://sourceforge.net/projects/lmod/files/', + 'http://sourceforge.net/projects/lmod/files/Testing' +] + +dependencies = [("Lua", "5.1.4-8")] + +sanity_check_paths = { + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], + 'dirs': [] +} + +moduleclass = "tools" diff --git a/easybuild/easyconfigs/l/Lmod/README.rst b/easybuild/easyconfigs/l/Lmod/README.rst index 48753e0ac6..815110820e 100644 --- a/easybuild/easyconfigs/l/Lmod/README.rst +++ b/easybuild/easyconfigs/l/Lmod/README.rst @@ -10,14 +10,14 @@ Howto Assuming you have successfully used the bootstrap procedure of EasyBuild, you should be able to initiate a recursive build of the following bits:: - EASYBUILD_OPTARCH= time eb Lmod-5.8-GCC-4.8.2.eb -r + EASYBUILD_OPTARCH= time eb Lmod-5.8.4-GCC-4.8.2.eb -r which is going to build the following modules/easyconfigs:: g/GCC/GCC-4.8.2.eb ## if this breaks use: --try-amend=parallel=1 n/ncurses/ncurses-5.9-GCC-4.8.2.eb ## On MacOSX, this should pick a special patch l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb ## Lmod is written in Lua, which needs ncurses - l/Lmod/Lmod-5.8-GCC-4.8.2.eb ## Lmod should be built with -r, to build the above + l/Lmod/Lmod-5.8.4-GCC-4.8.2.eb ## Lmod should be built with -r, to build the above This operation is expected to be the needed substrate to launch you towards Lmod; Lmod facility gets activated with the `sourceme` script available next to this file:: @@ -30,6 +30,7 @@ Then try:: If so, now you implemented the better instance of environment modules implementations: https://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-17.html + Lmod's caching can help to work with *buildsets*; ref. https://fosdem.org/2014/schedule/event/hpc_devroom_hpcbios/ You should now be able to try alternative Lmod/Lua versions, toggle the cache, and so forth. diff --git a/easybuild/easyconfigs/l/Lmod/sourceme b/easybuild/easyconfigs/l/Lmod/sourceme index 6462b395ba..738655d1eb 100644 --- a/easybuild/easyconfigs/l/Lmod/sourceme +++ b/easybuild/easyconfigs/l/Lmod/sourceme @@ -2,7 +2,7 @@ # # This script helps to implement policy: https://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-17.html # -# prereq: Lmod/5.8-GCC-4.8.2 +# prereq: Lmod/5.8.4-GCC-4.8.2 # prereq: Lua/5.1.4-8-GCC-4.8.2 # # build prereqs, take a note: GCC/4.8.2 & ncurses/5.9 @@ -12,7 +12,7 @@ EASYBUILD_PREFIX=${EASYBUILD_PREFIX:-"$HOME/.local/easybuild"} TOOLCHAIN="GCC-4.8.2" VERSIONLUA="5.1.4-8" -VERSIONLMOD="5.8" +VERSIONLMOD="5.8.4" PREFIXLUA=$EASYBUILD_PREFIX/software/Lua/$VERSIONLUA-$TOOLCHAIN PREFIXLMOD=$EASYBUILD_PREFIX/software/Lmod/$VERSIONLMOD-$TOOLCHAIN/lmod/$VERSIONLMOD -- GitLab From c7e954c517c55d432c2fc02467b9da140b0f37dd Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 23 Jan 2015 21:39:29 +0100 Subject: [PATCH 0449/1217] Fixed toolchain to what was intended --- easybuild/easyconfigs/g/GDB/GDB-7.8.2-GCC-4.9.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.8.2-GCC-4.9.2.eb b/easybuild/easyconfigs/g/GDB/GDB-7.8.2-GCC-4.9.2.eb index 88f5913bb0..9044e641e1 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.8.2-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.8.2-GCC-4.9.2.eb @@ -9,7 +9,7 @@ description = "The GNU Project Debugger" sources = [SOURCELOWER_TAR_XZ] source_urls = [GNU_SOURCE] -toolchain = {'name': 'intel', 'version': '2015a'} +toolchain = {'name': 'GCC', 'version': '4.9.2'} dependencies = [('ncurses', '5.9')] -- GitLab From 32db5ff9f0cb15ac0e70c3f5894196aff8337102 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Fri, 23 Jan 2015 22:41:09 +0200 Subject: [PATCH 0450/1217] make ncurses patch non-conditional Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb | 2 +- easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb | 2 +- ...5.9-GCC-4.8.2.eb => ncurses-5.9-GCC-4.8.2-no-cpp-patch.eb} | 4 ++-- 3 files changed, 4 insertions(+), 4 deletions(-) rename easybuild/easyconfigs/n/ncurses/{ncurses-5.9-GCC-4.8.2.eb => ncurses-5.9-GCC-4.8.2-no-cpp-patch.eb} (88%) diff --git a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb index 31389a4078..049c9ea0c5 100644 --- a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb @@ -16,7 +16,7 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} sources = ['lua-%s.tar.gz' % version.replace('-', '.')] source_urls = ['http://sourceforge.net/projects/lmod/files/'] -dependencies = [('ncurses', '5.9')] +dependencies = [('ncurses', '5.9', '-no-cpp-patch')] sanity_check_paths = { 'files': ["bin/lua"], diff --git a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb index 85d67ef440..dcf341b811 100644 --- a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb @@ -16,7 +16,7 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} sources = ['lua-%s.tar.gz' % version.replace('-', '.')] source_urls = ['http://sourceforge.net/projects/lmod/files/'] -dependencies = [('ncurses', '5.9')] +dependencies = [('ncurses', '5.9', '-no-cpp-patch')] sanity_check_paths = { 'files': ["bin/lua"], diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2-no-cpp-patch.eb similarity index 88% rename from easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2.eb rename to easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2-no-cpp-patch.eb index 10e096c539..b780bd011a 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2-no-cpp-patch.eb @@ -1,5 +1,6 @@ name = 'ncurses' version = '5.9' +versionsuffix = '-no-cpp-patch' homepage = 'http://www.gnu.org/software/ncurses/' description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, @@ -8,8 +9,7 @@ description = """The Ncurses (new curses) library is a free software emulation o import platform -if platform.system() == 'Darwin': - patches = ['configure_darwin.patch'] +patches = ['configure_darwin.patch'] toolchain = {'name': 'GCC', 'version': '4.8.2'} toolchainopts = {'optarch': True, 'pic': True} -- GitLab From 26bb72a19733a37b71b84184115cf9ed130f67c1 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Sat, 24 Jan 2015 13:53:57 +0100 Subject: [PATCH 0451/1217] Another try for ncursesw --- .../easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb index 0cd975654f..b52538d409 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb @@ -12,7 +12,11 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] -# build the normal library and the UTF-8 version -configopts = ['', '--enable-widec '] +configopts = [ +# the regular version + '--enable-pc-files', +# the UTF-8 enabled version (ncursesw) + '--enable-pc-files --enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' +] moduleclass = 'devel' -- GitLab From 45f383391c229ea7e9b3e683cf7d0071fc7f6bae Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Sat, 24 Jan 2015 14:10:27 +0100 Subject: [PATCH 0452/1217] drop pkg-config in ncurses --- easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb index b52538d409..3ec3f49a07 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb @@ -14,9 +14,9 @@ sources = [SOURCE_TAR_GZ] configopts = [ # the regular version - '--enable-pc-files', + '', # the UTF-8 enabled version (ncursesw) - '--enable-pc-files --enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' + '--enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' ] moduleclass = 'devel' -- GitLab From 8d4bc93946f67e05902396465a00adaa45f96e83 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 26 Jan 2015 10:15:43 +0100 Subject: [PATCH 0453/1217] add easyconfig for STREAM with intel/2015a --- .../s/STREAM/STREAM-5.10-intel-2015a.eb | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/s/STREAM/STREAM-5.10-intel-2015a.eb diff --git a/easybuild/easyconfigs/s/STREAM/STREAM-5.10-intel-2015a.eb b/easybuild/easyconfigs/s/STREAM/STREAM-5.10-intel-2015a.eb new file mode 100644 index 0000000000..ede241886d --- /dev/null +++ b/easybuild/easyconfigs/s/STREAM/STREAM-5.10-intel-2015a.eb @@ -0,0 +1,37 @@ +easyblock = 'CmdCp' + +name = 'STREAM' +version = '5.10' + +homepage = 'http://www.cs.virginia.edu/stream/' +description = """The STREAM benchmark is a simple synthetic benchmark program that measures sustainable + memory bandwidth (in MB/s) and the corresponding computation rate for simple vector kernels.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'openmp': True} + +source_urls = ['http://www.cs.virginia.edu/stream/FTP/Code/'] +sources = ['%(namelower)s.c'] +checksums = ['dd2941e3a28ff90a79b571273c10aacf'] + +skipsteps = ['source'] + +# 10 million array elements (1000 runs): requires ~224MB of memory +cmds_str = "$CC $CFLAGS %(source)s -mcmodel=large -DSTREAM_ARRAY_SIZE=10000000 -DNTIMES=1000 -o stream_1Kx10M; " +# 100 million array elements (1000 runs): requires ~2.2GiB of memory +cmds_str += "$CC $CFLAGS %(source)s -mcmodel=large -DSTREAM_ARRAY_SIZE=100000000 -DNTIMES=1000 -o stream_1Kx100M; " +# 1 billion array elements (1000 runs): requires ~22.4 GiB of memory +cmds_str += "$CC $CFLAGS %(source)s -mcmodel=large -DSTREAM_ARRAY_SIZE=1000000000 -DNTIMES=1000 -o stream_1Kx1B; " + +cmds_map = [('stream.c', cmds_str)] + +files_to_copy = [(['stream_1Kx10M', 'stream_1Kx100M', 'stream_1Kx1B'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/stream_1Kx10M', 'bin/stream_1Kx100M', 'bin/stream_1Kx1B'], + 'dirs': [], +} + +tests = ['%(installdir)s/bin/stream_1Kx10M'] + +moduleclass = 'perf' -- GitLab From 226164b7a7b3674d577c8851c4c19fbb3be3a3aa Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 26 Jan 2015 13:27:45 +0100 Subject: [PATCH 0454/1217] Fixed file name, was inconsistent with toolchain used --- ...arMETIS-4.0.3-intel-2015b.eb => ParMETIS-4.0.3-intel-2015a.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/p/ParMETIS/{ParMETIS-4.0.3-intel-2015b.eb => ParMETIS-4.0.3-intel-2015a.eb} (100%) diff --git a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015b.eb b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015a.eb similarity index 100% rename from easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015b.eb rename to easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015a.eb -- GitLab From 8c6a0d18b5a5bb5f164ff919b301d9984cf44029 Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 26 Jan 2015 14:14:13 +0100 Subject: [PATCH 0455/1217] Fixed build depedency --- easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015a.eb b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015a.eb index cc44b91b6e..9212c66919 100644 --- a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.3-intel-2015a.eb @@ -17,6 +17,6 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -builddependencies = [('CMake', '3.1.0', '-GCC-4.9.2', True)] +builddependencies = [('CMake', '3.1.0', '', ('GCC', '4.9.2'))] moduleclass = 'math' -- GitLab From 59f859751f56fd811b9b29379c088eb8506aacb9 Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 26 Jan 2015 14:14:59 +0100 Subject: [PATCH 0456/1217] Moved maxparallel to appropriate place according to style --- .../SuiteSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb index 861109ce91..267fa3a4ce 100644 --- a/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb +++ b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.3-intel-2015a-ParMETIS-4.0.3.eb @@ -10,11 +10,11 @@ toolchainopts = {'opt': True, 'unroll': True, 'pic': True, 'static': True} source_urls = ['http://faculty.cse.tamu.edu/davis/SuiteSparse/'] sources = [SOURCE_TAR_GZ] -maxparallel = 1 - parmetis = 'ParMETIS' parmetis_ver = '4.0.3' versionsuffix = '-%s-%s' % (parmetis, parmetis_ver) dependencies = [(parmetis, parmetis_ver)] +maxparallel = 1 + moduleclass = 'numlib' -- GitLab From aedda425e2b968daea22a564f10162dcf461b795 Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 26 Jan 2015 14:59:07 +0100 Subject: [PATCH 0457/1217] Added intel easyconfig for Tcl --- .../t/Tcl/Tcl-8.6.3-intel-2015a.eb | 21 +++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-intel-2015a.eb diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-intel-2015a.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-intel-2015a.eb new file mode 100644 index 0000000000..fab2dfdb6c --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-intel-2015a.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.3' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' -- GitLab From 37efae0aa479ddaa5fe4f99c685876a73026abf9 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 26 Jan 2015 15:11:33 +0100 Subject: [PATCH 0458/1217] Fix remarks --- .../easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb | 2 +- easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb b/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb index 5b3f4e2bbe..e8dddb718d 100644 --- a/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/m/multitail/multitail-6.2.1-intel-2015a.eb @@ -25,7 +25,7 @@ prebuildopts = 'DESTDIR=%(installdir)s ' sanity_check_paths = { 'files': ['bin/multitail'], - 'dirs': ["."] + 'dirs': [], } moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb index 3ec3f49a07..867d190ac8 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2015a.eb @@ -13,9 +13,9 @@ source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] configopts = [ -# the regular version + # default build, no custom configure options '', -# the UTF-8 enabled version (ncursesw) + # the UTF-8 enabled version (ncursesw) '--enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' ] -- GitLab From 6af6f9521fa80fa243622e9bf4a86467c482fd30 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 26 Jan 2015 15:29:58 +0100 Subject: [PATCH 0459/1217] Fix linkage error for Cufflinks 2.0.2 Explicit add linking to boost_system --- .../c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb | 2 +- .../easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb | 2 +- .../easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb index c4150404a1..705676d95b 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb @@ -30,7 +30,7 @@ dependencies = [ ] configopts = '--with-boost=$EBROOTBOOST --with-bam-libdir=${EBROOTSAMTOOLS}/lib' -preconfigopts = 'CPPFLAGS=-I$EBROOTEIGEN/include' +preconfigopts = 'CPPFLAGS="-I$EBROOTEIGEN/include $CPPFLAGS" LDFLAGS="-lboost_system $LDFLAGS" ' sanity_check_paths = { 'files': ['bin/cufflinks'], diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb index 06cfa2e156..d06750abfc 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb @@ -32,7 +32,7 @@ dependencies = [ patches = ['Cufflinks_GCC-4.7.patch'] configopts = '--with-boost=$EBROOTBOOST --with-bam-libdir=${EBROOTSAMTOOLS}/lib' -preconfigopts = 'CPPFLAGS=-I$EBROOTEIGEN/include' +preconfigopts = 'CPPFLAGS="-I$EBROOTEIGEN/include $CPPFLAGS" LDFLAGS="-lboost_system $LDFLAGS" ' sanity_check_paths = { 'files': ['bin/cufflinks'], diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb index ac643427a0..b1689772bb 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb @@ -34,7 +34,7 @@ dependencies = [ configopts = '--with-boost=$EBROOTBOOST --with-bam-libdir=${EBROOTSAMTOOLS}/lib' configopts += ' --enable-intel64 ' -preconfigopts = 'CPPFLAGS=-I$EBROOTEIGEN/include' +preconfigopts = 'CPPFLAGS="-I$EBROOTEIGEN/include $CPPFLAGS" LDFLAGS="-lboost_system $LDFLAGS" ' sanity_check_paths = { 'files': ['bin/cufflinks'], -- GitLab From 09a41fb33a87e54ce3ad95a48906ad972a15b687 Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 26 Jan 2015 15:30:18 +0100 Subject: [PATCH 0460/1217] Added intel easyconfig for SQLite --- .../s/SQLite/SQLite-3.8.8.1-intel-2015a.eb | 40 +++++++++++++++++++ 1 file changed, 40 insertions(+) create mode 100644 easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb new file mode 100644 index 0000000000..8d2f1cffa2 --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb @@ -0,0 +1,40 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.8.8.1' + +homepage = 'http://www.sqlite.org/' +description = 'SQLite: SQL Database Engine in a C Library' + +# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz +source_urls = ['http://www.sqlite.org/2015/'] +version_numbers = version.split('.') +main_version = version_numbers.pop(0) +version_str = '%s%s' % (main_version, ''.join('%02d' % int(x) for x in version_numbers)) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] + +toolchain = {'name': 'intel', 'version': '2015a'} + +dependencies = [ + ('libreadline', '6.3'), + ('Tcl', '8.6.3'), +] + +sanity_check_paths = { + 'files': ['bin/sqlite3'], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From d163ab1f51fd4fef9f58465693dd00c9cba619ec Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 26 Jan 2015 16:42:33 +0100 Subject: [PATCH 0461/1217] add easyconfig for ABAQUS v6.14.1 --- .../a/ABAQUS/ABAQUS-6.14.1-linux-x86_64.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.14.1-linux-x86_64.eb diff --git a/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.14.1-linux-x86_64.eb b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.14.1-linux-x86_64.eb new file mode 100644 index 0000000000..47622c51e0 --- /dev/null +++ b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.14.1-linux-x86_64.eb @@ -0,0 +1,15 @@ +name = 'ABAQUS' +version = '6.14.1-linux-x86_64' + +homepage = 'http://www.simulia.com/products/abaqus_fea.html' +description = "Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA." + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['%s-%s.tgz' % (name, version.split('-')[0])] + +builddependencies = [('Java', '1.7.0_60')] + +preinstallopts = "export CHECK_DISK_SPACE=OFF && " + +moduleclass = 'cae' -- GitLab From fbdb124db421bbaf37d5757016a11917954221a4 Mon Sep 17 00:00:00 2001 From: gjbex Date: Mon, 26 Jan 2015 17:28:12 +0100 Subject: [PATCH 0462/1217] Fixed according to preferred style --- easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb index 8d2f1cffa2..273c060341 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb @@ -18,6 +18,8 @@ version = '3.8.8.1' homepage = 'http://www.sqlite.org/' description = 'SQLite: SQL Database Engine in a C Library' +toolchain = {'name': 'intel', 'version': '2015a'} + # eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz source_urls = ['http://www.sqlite.org/2015/'] version_numbers = version.split('.') @@ -25,8 +27,6 @@ main_version = version_numbers.pop(0) version_str = '%s%s' % (main_version, ''.join('%02d' % int(x) for x in version_numbers)) sources = ['sqlite-autoconf-%s.tar.gz' % version_str] -toolchain = {'name': 'intel', 'version': '2015a'} - dependencies = [ ('libreadline', '6.3'), ('Tcl', '8.6.3'), -- GitLab From f07d394b7532425cc896570d508cf09f36baef04 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 26 Jan 2015 20:15:25 +0100 Subject: [PATCH 0463/1217] Cufflinks: update download url --- .../c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb | 2 +- .../easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb | 2 +- .../easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb | 2 +- .../easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb index 705676d95b..5811e9598e 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goalf-1.1.0-no-OFED.eb @@ -20,7 +20,7 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://cufflinks.cbcb.umd.edu/downloads/'] +source_urls = ['http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/'] dependencies = [ ('Boost', '1.51.0', '-Python-2.7.3'), diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb index d06750abfc..ac13453d76 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-goolf-1.4.10.eb @@ -20,7 +20,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://cufflinks.cbcb.umd.edu/downloads/'] +source_urls = ['http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/'] dependencies = [ ('Boost', '1.51.0', '-Python-2.7.3'), diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb index b1689772bb..006624d252 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.0.2-ictce-5.3.0.eb @@ -21,7 +21,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://cufflinks.cbcb.umd.edu/downloads/'] +source_urls = ['http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/'] patches = ['Cufflinks-2.1.1_init-error.patch'] diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb index a9921b88b4..b007f41253 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-2.1.1-ictce-5.5.0.eb @@ -21,7 +21,7 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://cufflinks.cbcb.umd.edu/downloads/'] +source_urls = ['http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/'] patches = ['Cufflinks-2.1.1_init-error.patch'] -- GitLab From 635d78e880e33b2ecb79e54afd53bc9c59cc439e Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 27 Jan 2015 00:20:39 +0200 Subject: [PATCH 0464/1217] drop -no-cpp-patch refs, improve overall Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb | 2 +- easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb | 2 +- ...9-GCC-4.8.2-no-cpp-patch.eb => ncurses-5.9-GCC-4.8.2.eb} | 6 ++---- ...gure_darwin.patch => ncurses-5.9_configure_darwin.patch} | 0 4 files changed, 4 insertions(+), 6 deletions(-) rename easybuild/easyconfigs/n/ncurses/{ncurses-5.9-GCC-4.8.2-no-cpp-patch.eb => ncurses-5.9-GCC-4.8.2.eb} (78%) rename easybuild/easyconfigs/n/ncurses/{configure_darwin.patch => ncurses-5.9_configure_darwin.patch} (100%) diff --git a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb index 049c9ea0c5..31389a4078 100644 --- a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-5-GCC-4.8.2.eb @@ -16,7 +16,7 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} sources = ['lua-%s.tar.gz' % version.replace('-', '.')] source_urls = ['http://sourceforge.net/projects/lmod/files/'] -dependencies = [('ncurses', '5.9', '-no-cpp-patch')] +dependencies = [('ncurses', '5.9')] sanity_check_paths = { 'files': ["bin/lua"], diff --git a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb index dcf341b811..85d67ef440 100644 --- a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb @@ -16,7 +16,7 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} sources = ['lua-%s.tar.gz' % version.replace('-', '.')] source_urls = ['http://sourceforge.net/projects/lmod/files/'] -dependencies = [('ncurses', '5.9', '-no-cpp-patch')] +dependencies = [('ncurses', '5.9')] sanity_check_paths = { 'files': ["bin/lua"], diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2-no-cpp-patch.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2.eb similarity index 78% rename from easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2-no-cpp-patch.eb rename to easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2.eb index b780bd011a..3068c78b44 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2-no-cpp-patch.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.2.eb @@ -1,15 +1,13 @@ name = 'ncurses' version = '5.9' -versionsuffix = '-no-cpp-patch' homepage = 'http://www.gnu.org/software/ncurses/' description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" -import platform - -patches = ['configure_darwin.patch'] +# in relation to -no-cpp-precomp bug: https://lists.gnu.org/archive/html/bug-ncurses/2012-12/msg00001.html +patches = ['ncurses-5.9_configure_darwin.patch'] toolchain = {'name': 'GCC', 'version': '4.8.2'} toolchainopts = {'optarch': True, 'pic': True} diff --git a/easybuild/easyconfigs/n/ncurses/configure_darwin.patch b/easybuild/easyconfigs/n/ncurses/ncurses-5.9_configure_darwin.patch similarity index 100% rename from easybuild/easyconfigs/n/ncurses/configure_darwin.patch rename to easybuild/easyconfigs/n/ncurses/ncurses-5.9_configure_darwin.patch -- GitLab From 4b2e4cca502e88a8c184bb939c4b3c3ee9a60259 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 27 Jan 2015 00:22:27 +0200 Subject: [PATCH 0465/1217] bump to Lmod/5.8.5 Signed-off-by: Fotis Georgatos --- .../l/Lmod/{Lmod-5.8.4-GCC-4.8.2.eb => Lmod-5.8.5-GCC-4.8.2.eb} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/l/Lmod/{Lmod-5.8.4-GCC-4.8.2.eb => Lmod-5.8.5-GCC-4.8.2.eb} (97%) diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.8.4-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.8.5-GCC-4.8.2.eb similarity index 97% rename from easybuild/easyconfigs/l/Lmod/Lmod-5.8.4-GCC-4.8.2.eb rename to easybuild/easyconfigs/l/Lmod/Lmod-5.8.5-GCC-4.8.2.eb index 6ba5681703..abac83ac8a 100644 --- a/easybuild/easyconfigs/l/Lmod/Lmod-5.8.4-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.8.5-GCC-4.8.2.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = "Lmod" -version = "5.8.4" +version = "5.8.5" homepage = "http://sourceforge.net/projects/lmod/" description = """Lmod is a Lua based module system. Modules allow for dynamic modification -- GitLab From eefb8d9ec9621a0da596aa4095999e7995ca326e Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 27 Jan 2015 00:23:13 +0200 Subject: [PATCH 0466/1217] bump to Lmod/5.8.5, really Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/l/Lmod/README.rst | 4 ++-- easybuild/easyconfigs/l/Lmod/sourceme | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/l/Lmod/README.rst b/easybuild/easyconfigs/l/Lmod/README.rst index 815110820e..d3231b25ad 100644 --- a/easybuild/easyconfigs/l/Lmod/README.rst +++ b/easybuild/easyconfigs/l/Lmod/README.rst @@ -10,14 +10,14 @@ Howto Assuming you have successfully used the bootstrap procedure of EasyBuild, you should be able to initiate a recursive build of the following bits:: - EASYBUILD_OPTARCH= time eb Lmod-5.8.4-GCC-4.8.2.eb -r + EASYBUILD_OPTARCH= time eb Lmod-5.8.5-GCC-4.8.2.eb -r which is going to build the following modules/easyconfigs:: g/GCC/GCC-4.8.2.eb ## if this breaks use: --try-amend=parallel=1 n/ncurses/ncurses-5.9-GCC-4.8.2.eb ## On MacOSX, this should pick a special patch l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb ## Lmod is written in Lua, which needs ncurses - l/Lmod/Lmod-5.8.4-GCC-4.8.2.eb ## Lmod should be built with -r, to build the above + l/Lmod/Lmod-5.8.5-GCC-4.8.2.eb ## Lmod should be built with -r, to build the above This operation is expected to be the needed substrate to launch you towards Lmod; Lmod facility gets activated with the `sourceme` script available next to this file:: diff --git a/easybuild/easyconfigs/l/Lmod/sourceme b/easybuild/easyconfigs/l/Lmod/sourceme index 738655d1eb..cf5748704a 100644 --- a/easybuild/easyconfigs/l/Lmod/sourceme +++ b/easybuild/easyconfigs/l/Lmod/sourceme @@ -2,7 +2,7 @@ # # This script helps to implement policy: https://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-17.html # -# prereq: Lmod/5.8.4-GCC-4.8.2 +# prereq: Lmod/5.8.5-GCC-4.8.2 # prereq: Lua/5.1.4-8-GCC-4.8.2 # # build prereqs, take a note: GCC/4.8.2 & ncurses/5.9 @@ -12,7 +12,7 @@ EASYBUILD_PREFIX=${EASYBUILD_PREFIX:-"$HOME/.local/easybuild"} TOOLCHAIN="GCC-4.8.2" VERSIONLUA="5.1.4-8" -VERSIONLMOD="5.8.4" +VERSIONLMOD="5.8.5" PREFIXLUA=$EASYBUILD_PREFIX/software/Lua/$VERSIONLUA-$TOOLCHAIN PREFIXLMOD=$EASYBUILD_PREFIX/software/Lmod/$VERSIONLMOD-$TOOLCHAIN/lmod/$VERSIONLMOD -- GitLab From c233fad4010f9995bdc248ce2eb64c419c0bce60 Mon Sep 17 00:00:00 2001 From: Bart Verleye Date: Tue, 27 Jan 2015 13:25:36 +1300 Subject: [PATCH 0467/1217] not sure what i --- .../r/Rosetta/Rosetta-3.5-ictce-5.4.0.eb | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) create mode 100644 easybuild/easyconfigs/r/Rosetta/Rosetta-3.5-ictce-5.4.0.eb diff --git a/easybuild/easyconfigs/r/Rosetta/Rosetta-3.5-ictce-5.4.0.eb b/easybuild/easyconfigs/r/Rosetta/Rosetta-3.5-ictce-5.4.0.eb new file mode 100644 index 0000000000..3b2244afd0 --- /dev/null +++ b/easybuild/easyconfigs/r/Rosetta/Rosetta-3.5-ictce-5.4.0.eb @@ -0,0 +1,19 @@ +name = 'Rosetta' +version = '3.5' + +homepage = 'https://www.rosettacommons.org' +description = """Rosetta is the premier software suite for modeling macromolecular structures. As a flexible, +multi-purpose application, it includes tools for structure prediction, design, and remodeling of proteins and +nucleic acids.""" +toolchain = {'name': 'ictce', 'version': '5.4.0'} +toolchainopts = {'usempi': True} + +sources = ['%(namelower)s%(version)s_bundles.tgz'] + +modextravars = { + 'ROSETTA3_DB': '$root/rosetta_database' +} + +builddependencies = [('SCons', '2.3.0', '-Python-2.7.3')] + +moduleclass = 'bio' -- GitLab From 1241a05b1f7d379ae60edd928721c4b40399dae1 Mon Sep 17 00:00:00 2001 From: Bart Verleye Date: Tue, 27 Jan 2015 13:25:59 +1300 Subject: [PATCH 0468/1217] deleting file --- .../r/Rosetta/Rosetta-3.5-ictce-5.4.0.eb | 19 ------------------- 1 file changed, 19 deletions(-) delete mode 100644 easybuild/easyconfigs/r/Rosetta/Rosetta-3.5-ictce-5.4.0.eb diff --git a/easybuild/easyconfigs/r/Rosetta/Rosetta-3.5-ictce-5.4.0.eb b/easybuild/easyconfigs/r/Rosetta/Rosetta-3.5-ictce-5.4.0.eb deleted file mode 100644 index 3b2244afd0..0000000000 --- a/easybuild/easyconfigs/r/Rosetta/Rosetta-3.5-ictce-5.4.0.eb +++ /dev/null @@ -1,19 +0,0 @@ -name = 'Rosetta' -version = '3.5' - -homepage = 'https://www.rosettacommons.org' -description = """Rosetta is the premier software suite for modeling macromolecular structures. As a flexible, -multi-purpose application, it includes tools for structure prediction, design, and remodeling of proteins and -nucleic acids.""" -toolchain = {'name': 'ictce', 'version': '5.4.0'} -toolchainopts = {'usempi': True} - -sources = ['%(namelower)s%(version)s_bundles.tgz'] - -modextravars = { - 'ROSETTA3_DB': '$root/rosetta_database' -} - -builddependencies = [('SCons', '2.3.0', '-Python-2.7.3')] - -moduleclass = 'bio' -- GitLab From 36399c5b5b9246cae749227e5c6f41915faaccfc Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 27 Jan 2015 08:19:11 +0100 Subject: [PATCH 0469/1217] Turned code into one liner, as per request --- easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb index 273c060341..f5e96601f1 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-intel-2015a.eb @@ -22,9 +22,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} # eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz source_urls = ['http://www.sqlite.org/2015/'] -version_numbers = version.split('.') -main_version = version_numbers.pop(0) -version_str = '%s%s' % (main_version, ''.join('%02d' % int(x) for x in version_numbers)) +version_str = '%(version_major)s' + ''.join('%02d' % int(x) for x in version.split('.')[1:]) sources = ['sqlite-autoconf-%s.tar.gz' % version_str] dependencies = [ -- GitLab From 1aa81e9a343e6eb30b89d9fbe5d3635901159343 Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 27 Jan 2015 09:36:26 +0100 Subject: [PATCH 0470/1217] Added intel easyconfig for libX11 and dependencies --- .../inputproto-2.3.1-intel-2015a.eb | 19 +++++++++ .../k/kbproto/kbproto-1.0.6-intel-2015a.eb | 19 +++++++++ .../libX11-1.6.2-intel-2015a-Python-2.7.9.eb | 37 ++++++++++++++++++ .../l/libXau/libXau-1.0.8-intel-2015a.eb | 25 ++++++++++++ .../libpthread-stubs-0.3-intel-2015a.eb | 20 ++++++++++ ...ibxcb-1.11-intel-2015a-Python-2.7.9.eb.swp | Bin 0 -> 12288 bytes .../libxcb-1.11-intel-2015a-Python-2.7.9.eb | 34 ++++++++++++++++ ...xcb-proto-1.11-intel-2015a-Python-2.7.9.eb | 27 +++++++++++++ .../xextproto/xextproto-7.3.0-intel-2015a.eb | 25 ++++++++++++ .../x/xproto/xproto-7.0.27-intel-2015a.eb | 24 ++++++++++++ .../x/xtrans/xtrans-1.3.5-intel-2015a.eb | 26 ++++++++++++ 11 files changed, 256 insertions(+) create mode 100644 easybuild/easyconfigs/i/inputproto/inputproto-2.3.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libxcb/.libxcb-1.11-intel-2015a-Python-2.7.9.eb.swp create mode 100644 easybuild/easyconfigs/l/libxcb/libxcb-1.11-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2015a.eb create mode 100644 easybuild/easyconfigs/x/xproto/xproto-7.0.27-intel-2015a.eb create mode 100644 easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-intel-2015a.eb diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3.1-intel-2015a.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3.1-intel-2015a.eb new file mode 100644 index 0000000000..21d5d376d5 --- /dev/null +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3.1-intel-2015a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'inputproto' +version = '2.3.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org InputProto protocol headers.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in ['XI2.h', 'XI.h', 'XIproto.h', 'XI2proto.h']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2015a.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2015a.eb new file mode 100644 index 0000000000..2d16cb0b13 --- /dev/null +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.6-intel-2015a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'kbproto' +version = '1.0.6' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org KBProto protocol headers.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in ['XKBgeom.h', 'XKB.h', 'XKBproto.h', 'XKBsrv.h', 'XKBstr.h']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..3f72262d57 --- /dev/null +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'libX11' +version = '1.6.2' +versionsuffix = '-Python-2.7.9' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('xextproto', '7.3.0'), + ('xcb-proto', '1.11', versionsuffix), + ('inputproto', '2.3.1'), + ('xproto', '7.0.27'), + ('kbproto', '1.0.6'), +] + +dependencies = [ + ('libxcb', '1.11', versionsuffix), + ('xtrans', '1.3.5'), +] + +sanity_check_paths = { + 'files': ['include/X11/%s' % x for x in [ + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2015a.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2015a.eb new file mode 100644 index 0000000000..03dfe7dd92 --- /dev/null +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libXau' +version = '1.0.8' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """The libXau package contains a library implementing the X11 Authorization Protocol. +This is useful for restricting client access to the display.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +dependencies = [ + ('xproto', '7.0.27'), +] + +sanity_check_paths = { + 'files': ['lib/%s' % x for x in ['libXau.a', 'libXau.so']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2015a.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2015a.eb new file mode 100644 index 0000000000..3665102104 --- /dev/null +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2015a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'libpthread-stubs' +version = '0.3' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'intel', 'version': '2015a'} + +sanity_check_paths = { + 'files' : ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [] , +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxcb/.libxcb-1.11-intel-2015a-Python-2.7.9.eb.swp b/easybuild/easyconfigs/l/libxcb/.libxcb-1.11-intel-2015a-Python-2.7.9.eb.swp new file mode 100644 index 0000000000000000000000000000000000000000..7015b4fd640e56b6c355bdc5cf312959de633dcd GIT binary patch literal 12288 zcmeI2L5n0c6vwlI7j;$i;Kf6>WvE%`s_O1#cE$x2cUTr-hm~tfLD{=rJo+W}1L(m8@#fKk2L-SC4g9C7#$`nY^|nhw|2wId)Jxtk$-vNWHhTY^ z1G<|{2+E6u{B-ld(fxA#^uZn>&1iIWXJ>aObe&g9%Tt>wvyeI+pEEFDIi8lRF4D?0 z+PhqdW+il5Fwb(garxPVxnOQHYosdD(BekV<-$F*wyiU(%9Wh0`K+(faW)>OQhTA& z$!NU8(swt$G&-GRyV>iRn4Po0*cAypsRSB7Pxmg8E0ggkg!tOv5`FolJ5Oq~F|J4; z5{LvMfk+?{hy)^mNFWmU2Lj$+AfLegRNpt~>kEIY`^Q*C0+B!@5D7#Akw7F62}A;s zKqL?eL;{h(V@QA%g#7RfA@*4;9>4#e{r~^#3xxav{Rn*veFJ?3Z9@;9C*(WmOXv&e zBj_#YO=t+c3jJ}Bkl&%7q3@xup?lCADj*Ksf_{6BkWZmkp!-Ua>S{vBT|!ZkLe?(1Mo$u{xoQfLBdawT zwu5rJTyzPq$#mF`4sZOsGDz1_i<(tzFr;{}HL_#7rWdYntvbW1;)Ch`n8B6Iiq?fI ztFGQ?-uV$bwdsmBEcGkIE3pe=hvD8c#b?c%Q+|)(i)P*>+!YjgbycR+`whDF< zNF{TrgiB~34DNlt@RrM1LbvFe&P|PPsp-j}^}tPKjg!7xd;xxozGyM5Ptaeg50Pfl@;16QNSFw1FulmSZiuO zq&Qzxtl`ednN--&Y%mxABo36c9>lRMSdQTE_%D}qKUGXG8XOUNUFz23_VNDp%Tzkb zXf3Q_TvS5)_Lv>xDA2iJzQJ8wV1TQbQs^?iy`4i+no8K<4YbdJhArrMgn=RTJt2Wu dc)}dv4+tS`HoY=@8LazlGJR8v1GW?i`4iXzsN4Vm literal 0 HcmV?d00001 diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.11-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.11-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..7d20038412 --- /dev/null +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.11-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'libxcb' +version = '1.11' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pyver = '2.7.9' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), + ('xcb-proto', '1.11', versionsuffix), + ('libXau', '1.0.8'), + ('libpthread-stubs', '0.3'), +] + +sanity_check_paths = { + 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", + "-randr", "-record", "-render", "-res", "-screensaver", + "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", + "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'dirs': ['include/xcb', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..38f0fd5a88 --- /dev/null +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'xcb-proto' +version = '1.11' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pyver = '2.7.9' +versionsuffix = '-%s-%s' % (python, pyver) +dependencies = [(python, pyver)] + +pyshortver = '.'.join(pyver.split('.')[0:2]) + +sanity_check_paths = { + 'files': ['lib/pkgconfig/xcb-proto.pc'], + 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2015a.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2015a.eb new file mode 100644 index 0000000000..ee0ab26f86 --- /dev/null +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'xextproto' +version = '7.3.0' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """XExtProto protocol headers.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] + ], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.27-intel-2015a.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.27-intel-2015a.eb new file mode 100644 index 0000000000..4093d23e90 --- /dev/null +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.27-intel-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'xproto' +version = '7.0.27' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "X protocol and ancillary headers" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs' : [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-intel-2015a.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-intel-2015a.eb new file mode 100644 index 0000000000..ef00169dc4 --- /dev/null +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-intel-2015a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'xtrans' +version = '1.3.5' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """xtrans includes a number of routines to make X implementations transport-independent; + at time of writing, it includes support for UNIX sockets, IPv4, IPv6, and DECnet. +""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +sanity_check_paths = { + 'files' : ['include/X11/Xtrans/%s' % x for x in [ + 'transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', + 'Xtranssock.c', 'Xtransutil.c' + ] + ], + 'dirs' : [] +} + +moduleclass = 'devel' -- GitLab From 7b49fdce5c8eebd5e0612cdd0f672145a9cedc87 Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 27 Jan 2015 09:42:56 +0100 Subject: [PATCH 0471/1217] Removed accidentally added swp file --- ....libxcb-1.11-intel-2015a-Python-2.7.9.eb.swp | Bin 12288 -> 0 bytes 1 file changed, 0 insertions(+), 0 deletions(-) delete mode 100644 easybuild/easyconfigs/l/libxcb/.libxcb-1.11-intel-2015a-Python-2.7.9.eb.swp diff --git a/easybuild/easyconfigs/l/libxcb/.libxcb-1.11-intel-2015a-Python-2.7.9.eb.swp b/easybuild/easyconfigs/l/libxcb/.libxcb-1.11-intel-2015a-Python-2.7.9.eb.swp deleted file mode 100644 index 7015b4fd640e56b6c355bdc5cf312959de633dcd..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 12288 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2001 From: Robert Schmidt Date: Tue, 27 Jan 2015 20:05:51 +0000 Subject: [PATCH 0472/1217] new R version --- .../easyconfigs/r/R/R-3.1.2-foss-2015a.eb | 388 ++++++++++++++++++ 1 file changed, 388 insertions(+) create mode 100644 easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb new file mode 100644 index 0000000000..16a52c2e37 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb @@ -0,0 +1,388 @@ +name = 'R' +version = '3.1.2' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.16'), # for plotting in R + ('libjpeg-turbo', '1.4.0'), # for plottting in R + ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it +] + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.r-project.org/src/contrib/', # current version of packages + 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': name_tmpl, +} +# Bioconductor packages have a different download url +bioconductor_options = { + 'source_urls': [ + 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', + ], + 'source_tmpl': name_tmpl, +} + +# !! order of packages is important !! +# packages updated on January 8th 2015 +exts_list = [ + # default libraries, only here to sanity check their presence + 'base', + 'datasets', + 'graphics', + 'grDevices', + 'grid', + 'methods', + 'splines', + 'stats', + 'stats4', + 'tools', + 'utils', + # non-standard libraries, should be specified with fixed versions! + ('Rmpi', '0.6-5', dict(ext_options.items() + [('patches', ['Rmpi-0.6-5_impi5.patch'])])), + ('abind', '1.4-0', ext_options), + ('magic', '1.5-6', ext_options), + ('geometry', '0.3-4', dict(ext_options.items() + [('patches', ['geometry-0.3-4-icc.patch'])])), + ('bit', '1.1-12', ext_options), + ('filehash', '2.2-2', ext_options), + ('ff', '2.2-13', ext_options), + ('bnlearn', '3.6', ext_options), + ('bootstrap', '2014.4', ext_options), + 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.../t/Tcl/Tcl-8.5.12-ictce-5.3.0.eb | 4 ++++ .../t/Tcl/Tcl-8.5.12-ictce-5.5.0.eb | 4 ++++ .../t/Tcl/Tcl-8.5.12-intel-2014b.eb | 4 ++++ .../t/Tcl/Tcl-8.5.14-goolf-1.4.10.eb | 4 ++++ .../t/Tcl/Tcl-8.5.14-ictce-5.3.0.eb | 4 ++++ .../t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb | 4 ++++ .../t/Tcl/Tcl-8.5.16-ictce-5.5.0.eb | 4 ++++ .../t/Tcl/Tcl-8.6.1-goolf-1.4.10.eb | 4 ++++ .../t/Tcl/Tcl-8.6.1-ictce-5.3.0.eb | 4 ++++ .../t/Tcl/Tcl-8.6.2-intel-2014b.eb | 4 ++++ .../z/zlib/zlib-1.2.5-ictce-5.3.0.eb | 1 - .../z/zlib/zlib-1.2.5-ictce-5.5.0.eb | 24 +++++++++++++++++++ .../z/zlib/zlib-1.2.7-gmvapich2-1.7.12.eb | 22 +++++++++++++++++ .../z/zlib/zlib-1.2.7-goolfc-1.3.12.eb | 22 +++++++++++++++++ 23 files changed, 144 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.5.0.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvapich2-1.7.12.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolfc-1.3.12.eb diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.3.5-ictce-5.5.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.3.5-ictce-5.5.0.eb index 726260bf2a..c8585dbd41 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.3.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.3.5-ictce-5.5.0.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.5'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb index 56aa85437a..25a490d28f 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'foss', 'version': '2014b'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.7'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvapich2-1.7.12.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvapich2-1.7.12.eb index 0b513c298d..ebb7aaad40 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvapich2-1.7.12.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvapich2-1.7.12.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'gmvapich2', 'version': '1.7.12'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.7'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvolf-1.7.12.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvolf-1.7.12.eb index 9743808746..636a05dbcc 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-gmvolf-1.7.12.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'gmvolf', 'version': '1.7.12'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.7'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goalf-1.1.0-no-OFED.eb index 798d6318ab..f0adbd439b 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goalf-1.1.0-no-OFED.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.7'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolf-1.4.10.eb index 03ee12ce9e..7c9d9e8066 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolf-1.4.10.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.7'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolfc-1.3.12.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolfc-1.3.12.eb index cbf87195ac..8b61aeff73 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolfc-1.3.12.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-goolfc-1.3.12.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'goolfc', 'version': '1.3.12'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.7'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.10.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.10.eb index 6cb79b440c..fa762e96dc 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.10.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.10.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'ictce', 'version': '4.0.10'} source_urls = [SOURCEFORGE_SOURCE] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.7'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.6.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.6.eb index d5ce26d001..51a0291ac2 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-4.0.6.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'ictce', 'version': '4.0.6'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.7'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.3.0.eb index 202d36aca9..19f101522b 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.3.0.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.7'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.5.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.5.0.eb index e9377fec2a..35f9095bc8 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-ictce-5.5.0.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.7'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb index 6cf99c0db3..c54aec7e60 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'intel', 'version': '2014b'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.7'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-goolf-1.4.10.eb index b3c4b0b321..3e317dec24 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-goolf-1.4.10.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.7'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-ictce-5.3.0.eb index c792463dcf..5e237ee834 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.14-ictce-5.3.0.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.7'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb index c6470074d5..7f7f55c666 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.7'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.16-ictce-5.5.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.16-ictce-5.5.0.eb index 8acb552d5d..f46eebeee8 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.16-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.16-ictce-5.5.0.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.7'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-goolf-1.4.10.eb index 656a267905..39ddf4b3a8 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-goolf-1.4.10.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.7'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-ictce-5.3.0.eb index 71cf86f3ac..1392ae5cc8 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.1-ictce-5.3.0.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.7'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-intel-2014b.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-intel-2014b.eb index 193e0aaf1c..7a5ef170a5 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-intel-2014b.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-intel-2014b.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'intel', 'version': '2014b'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.8'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb index 62745d552f..4bf4930349 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb @@ -8,7 +8,6 @@ description = """zlib is designed to be a free, general-purpose, legally unencum not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.""" - toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'pic': True} diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.5.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.5.0.eb new file mode 100644 index 0000000000..9a7769b77c --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.5.0.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.5' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvapich2-1.7.12.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvapich2-1.7.12.eb new file mode 100644 index 0000000000..bf8527b938 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvapich2-1.7.12.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.7' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, +not covered by any patents -- lossless data-compression library for use on virtually any +computer hardware and operating system.""" + +toolchain = {'name': 'gmvapich2', 'version': '1.7.12'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ["include/zconf.h", "include/zlib.h", "lib/libz.a", "lib/libz.so"], + 'dirs': [] +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolfc-1.3.12.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolfc-1.3.12.eb new file mode 100644 index 0000000000..48c06464a8 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goolfc-1.3.12.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.7' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, +not covered by any patents -- lossless data-compression library for use on virtually any +computer hardware and operating system.""" + +toolchain = {'name': 'goolfc', 'version': '1.3.12'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 54b055749d5f3b4259c01b52ec21943e0d20fed1 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 28 Jan 2015 14:31:04 +0100 Subject: [PATCH 0474/1217] binutils 2.25 for GCC 4.9.2 --- .../b/binutils/binutils-2.25-GCC-4.9.2.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb new file mode 100644 index 0000000000..e44a4bc4f7 --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'binutils' +version = '2.25' + +homepage = 'http://directory.fsf.org/project/binutils/' +description = "binutils: GNU binary utilities" + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +dependencies = [ + ('zlib', '1.2.8'), +] + +binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a'] + + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], + 'dirs': [], +} + +moduleclass = 'tools' -- GitLab From 088c20eb5e6a8756cf380d5ead691f3be15e8f3e Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 28 Jan 2015 14:32:22 +0100 Subject: [PATCH 0475/1217] fosss-2015.01: with zlib & binutils --- easybuild/easyconfigs/f/foss/foss-2015.01.eb | 39 ++++++++++++++++++++ 1 file changed, 39 insertions(+) create mode 100644 easybuild/easyconfigs/f/foss/foss-2015.01.eb diff --git a/easybuild/easyconfigs/f/foss/foss-2015.01.eb b/easybuild/easyconfigs/f/foss/foss-2015.01.eb new file mode 100644 index 0000000000..7266051e56 --- /dev/null +++ b/easybuild/easyconfigs/f/foss/foss-2015.01.eb @@ -0,0 +1,39 @@ +easyblock = "Toolchain" + +name = 'foss' +version = '2015.01' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, including + OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp_name = 'GCC' +comp_version = '4.9.2' +comp = (comp_name, comp_version) + +blaslib = 'OpenBLAS' +blasver = '0.2.13' +blas = '%s-%s' % (blaslib, blasver) +blassuff = '-LAPACK-3.5.0' + +# toolchain used to build goolf dependencies +comp_mpi_tc_name = 'gompi' +comp_mpi_tc_ver = "%s" % version +comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) + +# compiler toolchain depencies +# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain +# because of toolchain preperation functions +dependencies = [ + comp, + ('zlib', '1.2.8', '', comp), + ('binutils', '2.25', '', comp), + ('OpenMPI', '1.8.4', '', comp), + (blaslib, blasver, blassuff, comp), + ('FFTW', '3.3.4', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), +] + +moduleclass = 'toolchain' -- GitLab From 9991a4e9bd90acedd99b0146f84c94d87cdcbd5c Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 28 Jan 2015 14:38:12 +0100 Subject: [PATCH 0476/1217] New gompi with zlib & binutils --- easybuild/easyconfigs/g/gompi/gompi-1.9.0.eb | 24 +++++++++++++++++++ .../easyconfigs/g/gompi/gompi-2015.01.eb | 24 +++++++++++++++++++ 2 files changed, 48 insertions(+) create mode 100644 easybuild/easyconfigs/g/gompi/gompi-1.9.0.eb create mode 100644 easybuild/easyconfigs/g/gompi/gompi-2015.01.eb diff --git a/easybuild/easyconfigs/g/gompi/gompi-1.9.0.eb b/easybuild/easyconfigs/g/gompi/gompi-1.9.0.eb new file mode 100644 index 0000000000..f50cd40115 --- /dev/null +++ b/easybuild/easyconfigs/g/gompi/gompi-1.9.0.eb @@ -0,0 +1,24 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = '1.9.0' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compname = 'GCC' +compver = '4.9.2' +comp = (compname, compver) + +# compiler toolchain dependencies +dependencies = [ + comp, + ('zlib', '1.2.8', '', comp), + ('binutils', '2.25', '', comp), + ('OpenMPI', '1.8.4', '', comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/gompi/gompi-2015.01.eb b/easybuild/easyconfigs/g/gompi/gompi-2015.01.eb new file mode 100644 index 0000000000..e59112cb7f --- /dev/null +++ b/easybuild/easyconfigs/g/gompi/gompi-2015.01.eb @@ -0,0 +1,24 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = '2015.01' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compname = 'GCC' +compver = '4.9.2' +comp = (compname, compver) + +# compiler toolchain dependencies +dependencies = [ + comp, + ('zlib', '1.2.8', '', comp), + ('binutils', '2.25', '', comp), + ('OpenMPI', '1.8.4', '', comp), +] + +moduleclass = 'toolchain' -- GitLab From cd2a6f815f46bf2983e3a11795f5def1d3e7033c Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 28 Jan 2015 14:38:33 +0100 Subject: [PATCH 0477/1217] New goolf & foss with zlib & binutils --- easybuild/easyconfigs/f/foss/foss-2015.01.eb | 2 +- easybuild/easyconfigs/g/goolf/goolf-1.9.0.eb | 39 ++++++++++++++++++++ 2 files changed, 40 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/g/goolf/goolf-1.9.0.eb diff --git a/easybuild/easyconfigs/f/foss/foss-2015.01.eb b/easybuild/easyconfigs/f/foss/foss-2015.01.eb index 7266051e56..411ab43736 100644 --- a/easybuild/easyconfigs/f/foss/foss-2015.01.eb +++ b/easybuild/easyconfigs/f/foss/foss-2015.01.eb @@ -18,7 +18,7 @@ blasver = '0.2.13' blas = '%s-%s' % (blaslib, blasver) blassuff = '-LAPACK-3.5.0' -# toolchain used to build goolf dependencies +# toolchain used to build foss dependencies comp_mpi_tc_name = 'gompi' comp_mpi_tc_ver = "%s" % version comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) diff --git a/easybuild/easyconfigs/g/goolf/goolf-1.9.0.eb b/easybuild/easyconfigs/g/goolf/goolf-1.9.0.eb new file mode 100644 index 0000000000..0f2aea75a4 --- /dev/null +++ b/easybuild/easyconfigs/g/goolf/goolf-1.9.0.eb @@ -0,0 +1,39 @@ +easyblock = "Toolchain" + +name = 'goolf' +version = '1.9.0' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, including + OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp_name = 'GCC' +comp_version = '4.9.2' +comp = (comp_name, comp_version) + +blaslib = 'OpenBLAS' +blasver = '0.2.13' +blas = '%s-%s' % (blaslib, blasver) +blassuff = '-LAPACK-3.5.0' + +# toolchain used to build goolf dependencies +comp_mpi_tc_name = 'gompi' +comp_mpi_tc_ver = "%s" % version +comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) + +# compiler toolchain depencies +# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain +# because of toolchain preperation functions +dependencies = [ + comp, + ('zlib', '1.2.8', '', comp), + ('binutils', '2.25', '', comp), + ('OpenMPI', '1.8.4', '', comp), + (blaslib, blasver, blassuff, comp), + ('FFTW', '3.3.4', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), +] + +moduleclass = 'toolchain' -- GitLab From 6c8f97284b062e5dcb9ab7b6e1a327bef6114255 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 28 Jan 2015 14:39:59 +0100 Subject: [PATCH 0478/1217] New FFTW easyconfigs for new gompi's --- .../f/FFTW/FFTW-3.3.4-gompi-2015.01.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015.01.eb diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015.01.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015.01.eb new file mode 100644 index 0000000000..080b817838 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015.01.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'gompi', 'version': '1.9.0'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-quad-precision", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' -- GitLab From 2132b1deeb371d18baa424cac1d498990d31bad9 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 28 Jan 2015 14:44:22 +0100 Subject: [PATCH 0479/1217] New scalapack easyconfigs --- ...ompi-1.9.0-OpenBLAS-0.2.13-LAPACK-3.5.0.eb | 25 +++++++++++++++++++ ...pi-2015.01-OpenBLAS-0.2.13-LAPACK-3.5.0.eb | 25 +++++++++++++++++++ 2 files changed, 50 insertions(+) create mode 100644 easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.9.0-OpenBLAS-0.2.13-LAPACK-3.5.0.eb create mode 100644 easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.01-OpenBLAS-0.2.13-LAPACK-3.5.0.eb diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.9.0-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.9.0-OpenBLAS-0.2.13-LAPACK-3.5.0.eb new file mode 100644 index 0000000000..e0aff023b0 --- /dev/null +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.9.0-OpenBLAS-0.2.13-LAPACK-3.5.0.eb @@ -0,0 +1,25 @@ +name = 'ScaLAPACK' +version = '2.0.2' + +homepage = 'http://www.netlib.org/scalapack/' +description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines + redesigned for distributed memory MIMD parallel computers.""" + +toolchain = {'name': 'gompi', 'version': '1.9.0'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = [SOURCELOWER_TGZ] + +blaslib = 'OpenBLAS' +blasver = '0.2.13' +blassuff = '-LAPACK-3.5.0' + +versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) + +dependencies = [(blaslib, blasver, blassuff, ('GCC', '4.9.2'))] + +## parallel build tends to fail, so disabling it +parallel = 1 + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.01-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.01-OpenBLAS-0.2.13-LAPACK-3.5.0.eb new file mode 100644 index 0000000000..962d8049d0 --- /dev/null +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.01-OpenBLAS-0.2.13-LAPACK-3.5.0.eb @@ -0,0 +1,25 @@ +name = 'ScaLAPACK' +version = '2.0.2' + +homepage = 'http://www.netlib.org/scalapack/' +description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines + redesigned for distributed memory MIMD parallel computers.""" + +toolchain = {'name': 'gompi', 'version': '2015.01'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = [SOURCELOWER_TGZ] + +blaslib = 'OpenBLAS' +blasver = '0.2.13' +blassuff = '-LAPACK-3.5.0' + +versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) + +dependencies = [(blaslib, blasver, blassuff, ('GCC', '4.9.2'))] + +## parallel build tends to fail, so disabling it +parallel = 1 + +moduleclass = 'numlib' -- GitLab From 8c06ce5366b6903de62cbd3af0af18cf0bc0a1e9 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 28 Jan 2015 14:44:54 +0100 Subject: [PATCH 0480/1217] New FFTW easyconfigs --- .../f/FFTW/FFTW-3.3.4-gompi-1.9.0.eb | 34 +++++++++++++++++++ .../f/FFTW/FFTW-3.3.4-gompi-2015.01.eb | 2 +- 2 files changed, 35 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.9.0.eb diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.9.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.9.0.eb new file mode 100644 index 0000000000..080b817838 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.9.0.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'gompi', 'version': '1.9.0'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-quad-precision", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015.01.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015.01.eb index 080b817838..bcb190c092 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015.01.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015.01.eb @@ -7,7 +7,7 @@ homepage = 'http://www.fftw.org' description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.""" -toolchain = {'name': 'gompi', 'version': '1.9.0'} +toolchain = {'name': 'gompi', 'version': '2015.01'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] -- GitLab From 0c4f936088ed782fc5a6793fd03b87deb6cc6ee6 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 28 Jan 2015 15:11:27 +0100 Subject: [PATCH 0481/1217] Added HPL for new foss & goolf --- .../easyconfigs/h/HPL/HPL-2.1-foss-2015.01.eb | 18 ++++++++++++++++++ .../easyconfigs/h/HPL/HPL-2.1-goolf-1.9.0.eb | 18 ++++++++++++++++++ 2 files changed, 36 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015.01.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.9.0.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015.01.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015.01.eb new file mode 100644 index 0000000000..6e2eb261d6 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015.01.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'foss', 'version': '2015.01'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.9.0.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.9.0.eb new file mode 100644 index 0000000000..e9fc6dc2e2 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.9.0.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'goolf', 'version': '1.9.0'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' -- GitLab From 46bc2daebf79665ed7407d1a94b2116026e854e7 Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 28 Jan 2015 17:04:54 +0100 Subject: [PATCH 0482/1217] Added Oracle Java easyconfig --- easybuild/easyconfigs/j/Java/Java-1.8.0_31.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/j/Java/Java-1.8.0_31.eb diff --git a/easybuild/easyconfigs/j/Java/Java-1.8.0_31.eb b/easybuild/easyconfigs/j/Java/Java-1.8.0_31.eb new file mode 100644 index 0000000000..0ab768fe89 --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.8.0_31.eb @@ -0,0 +1,15 @@ +name = 'Java' +version = '1.8.0_31' + +homepage = 'http://java.com/' +description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] + +moduleclass = 'lang' -- GitLab From f1759eb0ffb687c1b6694cdad94c36c01f17f98d Mon Sep 17 00:00:00 2001 From: Benjamin Roberts Date: Thu, 29 Jan 2015 10:47:49 +1300 Subject: [PATCH 0483/1217] Cleaned up version suffixes --- ...65.eb => ORCA-3_0_0-linux_x86-64-OpenMPI-1.6.5.eb} | 11 +++++++---- ...64.eb => ORCA-3_0_2-linux_x86-64-OpenMPI-1.6.5.eb} | 5 ++++- ...65.eb => ORCA-3_0_2-linux_x86-64-OpenMPI-1.8.1.eb} | 5 ++++- 3 files changed, 15 insertions(+), 6 deletions(-) rename easybuild/easyconfigs/o/ORCA/{ORCA-3_0_0-linux_x86-64_openmpi_165.eb => ORCA-3_0_0-linux_x86-64-OpenMPI-1.6.5.eb} (85%) rename easybuild/easyconfigs/o/ORCA/{ORCA-3_0_2-linux_x86-64.eb => ORCA-3_0_2-linux_x86-64-OpenMPI-1.6.5.eb} (91%) rename easybuild/easyconfigs/o/ORCA/{ORCA-3_0_2-linux_x86-64_openmpi_165.eb => ORCA-3_0_2-linux_x86-64-OpenMPI-1.8.1.eb} (91%) diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64_openmpi_165.eb b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64-OpenMPI-1.6.5.eb similarity index 85% rename from easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64_openmpi_165.eb rename to easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64-OpenMPI-1.6.5.eb index cab4bf21a6..f4147dd3b8 100644 --- a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64_openmpi_165.eb +++ b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64-OpenMPI-1.6.5.eb @@ -1,20 +1,23 @@ easyblock = "PackedBinary" name = "ORCA" -version = '3_0_0-linux_x86-64_openmpi_165' +version = '3_0_0-linux_x86-64' + +openmpiversion = '1.6.5' +versionsuffix = '-OpenMPI-%s' % openmpiversion homepage = 'http://www.thch.uni-bonn.de/tc/orca/' description = """ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry - with specific emphasis on spectroscopic properties of open-shell molecules. + with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- - and multireference correlated ab initio methods. + and multireference correlated ab initio methods. It can also treat environmental and relativistic effects.""" toolchain = {'name': 'dummy', 'version': 'dummy'} sources = ['%%(namelower)s_%s_%s.tbz' % (version.split('-')[0], '-'.join(version.split('-')[1:]))] -dependencies = [('OpenMPI', '1.6.5', '-GCC-4.7.2')] +dependencies = [('OpenMPI', openmpiversion, '-GCC-4.7.2')] sanity_check_paths = { 'files': ['orca_%s%s' % (x,y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64-OpenMPI-1.6.5.eb similarity index 91% rename from easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb rename to easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64-OpenMPI-1.6.5.eb index 7942dc6b14..c63048d89b 100644 --- a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64.eb +++ b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64-OpenMPI-1.6.5.eb @@ -3,6 +3,9 @@ easyblock = "PackedBinary" name = "ORCA" version = '3_0_2-linux_x86-64' +openmpiversion = '1.6.5' +versionsuffix = '-OpenMPI-%s' % openmpiversion + homepage = 'http://cec.mpg.de/forum/' description = """ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. @@ -14,7 +17,7 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} sources = ['%%(namelower)s_%s_%s.tbz' % (version.split('-')[0], '-'.join(version.split('-')[1:]))] -dependencies = [('OpenMPI', '1.8.1', '-GCC-4.8.3')] +dependencies = [('OpenMPI', openmpiversion, '-GCC-4.7.2')] sanity_check_paths = { 'files': ['orca_%s%s' % (x,y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64_openmpi_165.eb b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64-OpenMPI-1.8.1.eb similarity index 91% rename from easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64_openmpi_165.eb rename to easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64-OpenMPI-1.8.1.eb index 0103993c7a..5a28bbce0d 100644 --- a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64_openmpi_165.eb +++ b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64-OpenMPI-1.8.1.eb @@ -3,6 +3,9 @@ easyblock = "PackedBinary" name = "ORCA" version = '3_0_2-linux_x86-64' +openmpiversion = '1.8.1' +versionsuffix = '-OpenMPI-%s' % openmpiversion + homepage = 'http://cec.mpg.de/forum/' description = """ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. @@ -14,7 +17,7 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} sources = ['%%(namelower)s_%s_%s.tbz' % (version.split('-')[0], '-'.join(version.split('-')[1:]))] -dependencies = [('OpenMPI', '1.6.5', '-GCC-4.7.2')] +dependencies = [('OpenMPI', openmpiversion, '-GCC-4.8.3')] sanity_check_paths = { 'files': ['orca_%s%s' % (x,y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', -- GitLab From 4b02c46e3f9c0556a749006b6d6952d1514188e3 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Thu, 29 Jan 2015 13:56:50 +0100 Subject: [PATCH 0484/1217] modify as per #1242 feedback --- easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb index 8c4a091d7f..8be9aa164d 100644 --- a/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb +++ b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb @@ -22,8 +22,9 @@ description = """DNA Sequence Reads Compression is an application designed for c toolchain = {'name': 'dummy', 'version': 'dummy'} # fi. http://sun.aei.polsl.pl/dsrc/download/2.0rc/dsrc -sources = [name.lower()] +sources = ['%(namelower)s'] source_urls = [homepage + '/download/%(version)s/'] +checksums = [('md5', 'bdc40a96e33411cd4cdbe2b58ae285b7')] sanity_check_paths = { 'files': ['dsrc'], -- GitLab From 2d572c2117caf53ed624cbefc90ae04e6fa6a09a Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Thu, 29 Jan 2015 14:03:50 +0100 Subject: [PATCH 0485/1217] not makeopts, rather buildopts --- easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb | 4 ++-- easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb | 2 +- easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb | 2 +- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb index 5946229fc3..9726d8c156 100644 --- a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb @@ -26,8 +26,8 @@ minver = ''.join(version.split('.')) sources = [('fastqz%s.cpp' % minver, 'cp %s %(builddir)s/fastqz.cpp'), ('fapack.cpp', 'cp %s %(builddir)s')] source_urls = [homepage] -premakeopts = 'g++ -O3 -msse2 -s -lpthread fastqz.cpp $EBROOTZPAQ/include/libzpaq.cpp -o fastqz' -premakeopts += '&& g++ -O3 -s fapack.cpp -o fapack && /bin/true ' +prebuildopts = 'g++ -O3 -msse2 -s -lpthread fastqz.cpp $EBROOTZPAQ/include/libzpaq.cpp -o fastqz' +prebuildopts += '&& g++ -O3 -s fapack.cpp -o fapack && /bin/true ' files_to_copy = [(['fastqz', 'fapack'], 'bin')] diff --git a/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb b/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb index a08d8c5af1..5724bab7ac 100644 --- a/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb @@ -24,7 +24,7 @@ sources = ['%(namelower)s-v%(version)s-src.tar.gz'] source_urls = [SOURCEFORGE_SOURCE] preconfigopts = 'cd zlib-1.2.8 &&' -makeopts = '-C zlib-1.2.8 && make all' +buildopts = '-C zlib-1.2.8 && make all' files_to_copy = [(['scalce'], 'bin')] diff --git a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb index feed550444..3ab5b6fbdc 100644 --- a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb @@ -23,7 +23,7 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} sources = ['%%(namelower)s%s.zip' % ''.join(version.split('.'))] source_urls = ['http://mattmahoney.net/dc/'] -makeopts = ' && pod2man zpaq.pod > zpaq.1' +buildopts = ' && pod2man zpaq.pod > zpaq.1' files_to_copy = [(["zpaq"], 'bin'), (["zpaq.1"], 'share/man'), (["libzpaq.h", "libzpaq.cpp"], 'include')] -- GitLab From 076d8971e8f5043c0b611168a9c389b51373a6aa Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 29 Jan 2015 14:13:25 +0100 Subject: [PATCH 0486/1217] Drop preconfigopts from zlib We don't know why it's there and it seems to be messing up the `zlib.map` inclusion. --- easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb index 1b3b05c520..73e6b29017 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], -- GitLab From f9b6c48f134bdfebb0a0ccf06fbb915a0d5fff8a Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 29 Jan 2015 14:42:01 +0100 Subject: [PATCH 0487/1217] Drop the `-shared` flag passed when building zlib For some unknown reason, we pass the -shared flag to CC when building GCC. This overwrites some stuff in the configure script which we don't want to override. The zlib.map is not being used when build the so file. --- easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.7-foss-2014b.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015a.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.2.5.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.3.5.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.1.2.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014b.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015a.eb | 2 -- easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb | 2 -- 21 files changed, 42 deletions(-) diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb index 2e18c3c221..8eedf49cf6 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb index 3ea3c48ed3..1bcd57dece 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb index d2f50aacb7..4a778d2bba 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb index 62745d552f..46d721cc9d 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb @@ -15,8 +15,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-foss-2014b.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-foss-2014b.eb index 3368016589..9909f13d52 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-foss-2014b.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-foss-2014b.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb index a100b33695..2135132db6 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb index bdb56c788c..719603c67b 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb index 1b3b05c520..73e6b29017 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb index 7ceb9c2b65..0e2477a576 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015a.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015a.eb index 2011a3f3b4..5ee64f138f 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015a.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015a.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb index 6cd26f940d..31d9f79f39 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb index 8b2ff4d3a0..5aab00b506 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb index 4fe89ed538..6426ff8246 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb index caf2dc0994..4fdee82cf9 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb index f62e4705f9..90d83e616d 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%s' % version, 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.2.5.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.2.5.eb index 4f273b2129..0e7907365c 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.2.5.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%s' % version, 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.3.5.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.3.5.eb index 434f52a5c9..b685cd0ccc 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.3.5.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.3.5.eb @@ -17,8 +17,6 @@ source_urls = [ ('http://sourceforge.net/projects/libpng/files/zlib/%s' % version, 'download') ] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.1.2.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.1.2.eb index 67693b864b..1e7e916a55 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.1.2.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%s' % version, 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014b.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014b.eb index f986af06f4..fafed06166 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014b.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014b.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015a.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015a.eb index 81a7fb149f..13f8b375ac 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015a.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015a.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb index 3a10e30ffe..8f93afc07c 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], -- GitLab From ebfea94815bc0b6f7c2b75b5751be9b3fdc4b4f9 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Thu, 29 Jan 2015 14:53:25 +0100 Subject: [PATCH 0488/1217] convert easyconfig from hackish MakeCp to less such CmdCp --- .../easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb | 13 +++++++++---- 1 file changed, 9 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb index 9726d8c156..b750d29bed 100644 --- a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb @@ -7,7 +7,7 @@ # $Id$ ## -easyblock = 'MakeCp' +easyblock = 'CmdCp' name = 'fastqz' version = '1.5' @@ -18,16 +18,21 @@ description = """fastqz is a compressor for FASTQ files. FASTQ is the output of FASTQ and SAM Format Sequencing Data. (mirror) PLoS ONE 8(3): e59190. doi:10.1371/journal.pone.0059190""" toolchain = {'name': 'GCC', 'version': '4.8.2'} +toolchainopts = {'opt': True, 'optarch': True} dependencies = [('ZPAQ', '6.57')] # eg. http://mattmahoney.net/dc/fastqz/fastqz15.cpp & http://mattmahoney.net/dc/fastqz/fapack.cpp minver = ''.join(version.split('.')) -sources = [('fastqz%s.cpp' % minver, 'cp %s %(builddir)s/fastqz.cpp'), ('fapack.cpp', 'cp %s %(builddir)s')] +sources = ['fastqz%s.cpp' % minver, 'fapack.cpp'] source_urls = [homepage] -prebuildopts = 'g++ -O3 -msse2 -s -lpthread fastqz.cpp $EBROOTZPAQ/include/libzpaq.cpp -o fastqz' -prebuildopts += '&& g++ -O3 -s fapack.cpp -o fapack && /bin/true ' +skipsteps = ['source'] + +cmds_map = [ + ('fastqz%s.cpp' % minver, '$CXX $CFLAGS -lpthread %(source)s $EBROOTZPAQ/include/libzpaq.cpp -o fastqz'), + ('fapack.cpp', '$CXX $CFLAGS -s %(source)s -o %(target)s') +] files_to_copy = [(['fastqz', 'fapack'], 'bin')] -- GitLab From 6eabe54406309d9299f3bde9d046400f316688c1 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Thu, 29 Jan 2015 15:00:30 +0100 Subject: [PATCH 0489/1217] fix DSRC & fqzcomp minor issues, as asked --- easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb | 2 +- easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb | 2 -- 2 files changed, 1 insertion(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb index 8be9aa164d..e0cb4f9a7d 100644 --- a/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb +++ b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb @@ -23,7 +23,7 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} # fi. http://sun.aei.polsl.pl/dsrc/download/2.0rc/dsrc sources = ['%(namelower)s'] -source_urls = [homepage + '/download/%(version)s/'] +source_urls = ['http://sun.aei.polsl.pl/dsrc/download/%(version)s/'] checksums = [('md5', 'bdc40a96e33411cd4cdbe2b58ae285b7')] sanity_check_paths = { diff --git a/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb index 3ca5906073..867cc250e1 100644 --- a/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb @@ -22,8 +22,6 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} sources = [SOURCE_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] -skipsteps = ['configure'] - files_to_copy = [(['fqz_comp'], 'bin')] sanity_check_paths = { -- GitLab From 194a90159c492562e72d399f924a1ec437062565 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Thu, 29 Jan 2015 15:06:54 +0100 Subject: [PATCH 0490/1217] make Quip compatible w. eb/2.0 --- easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb index c3812cfb0a..01169de210 100644 --- a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb @@ -7,6 +7,8 @@ # $Id$ ## +easyblock = 'ConfigureMake' + name = 'Quip' version = '1.1.8' -- GitLab From f244f84c3a1c56eabb84c3b1e2d20b2cac1fb31b Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Thu, 29 Jan 2015 17:57:12 +0000 Subject: [PATCH 0491/1217] this is a dep of the gmp extension --- .../easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb new file mode 100644 index 0000000000..c7f00d04ae --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '5.1.3' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/gmp'] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' -- GitLab From 2e6998f16884b1d817c7244f7ed310efb022c024 Mon Sep 17 00:00:00 2001 From: Bart Verleye Date: Fri, 30 Jan 2015 16:57:34 +1300 Subject: [PATCH 0492/1217] adding bsoft --- .../easyconfigs/b/bsoft-1.8.8-goolf-1.5.14.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/b/bsoft-1.8.8-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/b/bsoft-1.8.8-goolf-1.5.14.eb b/easybuild/easyconfigs/b/bsoft-1.8.8-goolf-1.5.14.eb new file mode 100644 index 0000000000..666dd772d0 --- /dev/null +++ b/easybuild/easyconfigs/b/bsoft-1.8.8-goolf-1.5.14.eb @@ -0,0 +1,28 @@ +easyblock = 'CmdCp' + +name = 'bsoft' +version = '1.8.8' + +homepage = 'http://lsbr.niams.nih.gov/bsoft/' +description = """Bsoft is a collection of programs and a platform for development of software +for image and molecular processing in structural biology. Problems in structural biology +are approached with a highly modular design, allowing fast development of new algorithms +without the burden of issues such as file I/O. It provides an easily accessible interface, +a resource that can be and has been used in other packages.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'openmp': True} + +source_urls = ['http://lsbr.niams.nih.gov/bsoft/'] +sources = ['%(name)s1_8_8.tar'] + +cmds_map = [('./bmake', 'omp fftw=$EBROOTFFTW')] + +files_to_copy = [('bin')] + +sanity_check_paths = { + 'files': [''], + 'dirs': ['bin'], +} + +moduleclass = 'bio' -- GitLab From dcf2f5f54872047b97d301ee74013a9adf1fafa5 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 30 Jan 2015 09:38:37 +0100 Subject: [PATCH 0493/1217] Added foss easyconfig for Boost --- .../Boost-1.57.0-foss-2015a-Python-2.7.9.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.57.0-foss-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.57.0-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-foss-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..1c2ebd212d --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-foss-2015a-Python-2.7.9.eb @@ -0,0 +1,25 @@ +name = 'Boost' +version = '1.57.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +pythonversion = '2.7.9' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' -- GitLab From a8553aed07cf06f6af9fcf4405fbbea669a2d6d7 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 30 Jan 2015 09:39:38 +0100 Subject: [PATCH 0494/1217] Added foss easyconfig for GSL --- .../easyconfigs/g/GSL/GSL-1.16-foss-2015a.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/g/GSL/GSL-1.16-foss-2015a.eb diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-foss-2015a.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-foss-2015a.eb new file mode 100644 index 0000000000..b20d7731f8 --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-foss-2015a.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '1.16' + +homepage = 'http://www.gnu.org/software/gsl/' +description = """The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. + The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +moduleclass = 'numlib' -- GitLab From e2d1111e149a904a8d6454f63ef1b17d04bf4d07 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 30 Jan 2015 09:47:03 +0100 Subject: [PATCH 0495/1217] Added foss easyconfig for expat --- .../easyconfigs/e/expat/expat-2.1.0-foss-2015a.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2015a.eb diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2015a.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2015a.eb new file mode 100644 index 0000000000..1381b2b8cd --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2015a.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'expat' +version = '2.1.0' + +homepage = 'http://expat.sourceforge.net/' +description = """Expat is an XML parser library written in C. It is a stream-oriented parser in which an application + registers handlers for things the parser might find in the XML document (like start tags)""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +moduleclass = 'tools' -- GitLab From 05d224d4e9345756c7191dfe6cda535319fb1534 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 30 Jan 2015 09:52:07 +0100 Subject: [PATCH 0496/1217] Added foss easyconfig for libxml2 --- .../l/libxml2/libxml2-2.9.2-foss-2015a.eb | 23 +++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015a.eb diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015a.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015a.eb new file mode 100644 index 0000000000..12454bc9c4 --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'libxml2' +version = '2.9.2' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and +toolchain developed for the Gnome project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' + +dependencies = [('zlib', '1.2.8')] + +moduleclass = 'lib' -- GitLab From cb82dc83e3b7083b4c5dc8e47529a7df68306bd3 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 30 Jan 2015 10:01:03 +0100 Subject: [PATCH 0497/1217] Added foss easyconfig for GMP --- .../easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb new file mode 100644 index 0000000000..c7f00d04ae --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '5.1.3' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/gmp'] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' -- GitLab From 3fb1251870e878bc7cb8d521f65378b7e18a1669 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 30 Jan 2015 10:17:25 +0100 Subject: [PATCH 0498/1217] Added foss easyconfig for latest GMP --- .../g/GMP/GMP-6.0.0a-foss-2015a.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/g/GMP/GMP-6.0.0a-foss-2015a.eb diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-foss-2015a.eb b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-foss-2015a.eb new file mode 100644 index 0000000000..2b5b650040 --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-foss-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '6.0.0a' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/gmp'] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' -- GitLab From 356bb45f656a6adac65444adaa59e45684d0b7a8 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 30 Jan 2015 10:21:06 +0100 Subject: [PATCH 0499/1217] Added foss easyconfig for MPFR --- .../m/MPFR/MPFR-3.1.2-foss-2015a.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-foss-2015a.eb diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-foss-2015a.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-foss-2015a.eb new file mode 100644 index 0000000000..4224e2bf0a --- /dev/null +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-foss-2015a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'MPFR' +version = '3.1.2' + +homepage = 'http://www.mpfr.org' +description = """The MPFR library is a C library for multiple-precision + floating-point computations with correct rounding.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['http://www.mpfr.org/mpfr-%(version)s/'] +sources = [SOURCELOWER_TAR_BZ2] + +patches = ['MPFR_ictce_remove-deprecated-mp.patch'] + +dependencies = [('GMP', '5.1.3')] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libmpfr.%s' % SHLIB_EXT, 'include/mpfr.h'], + 'dirs': [] +} + +moduleclass = 'math' -- GitLab From 5b5fd4a043662a9b238bdce8fb0b58cbb00c43bb Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 30 Jan 2015 10:23:09 +0100 Subject: [PATCH 0500/1217] Added foss easyconfig for MPC --- .../easyconfigs/m/MPC/MPC-1.0.2-foss-2015a.eb | 30 +++++++++++++++++++ 1 file changed, 30 insertions(+) create mode 100644 easybuild/easyconfigs/m/MPC/MPC-1.0.2-foss-2015a.eb diff --git a/easybuild/easyconfigs/m/MPC/MPC-1.0.2-foss-2015a.eb b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-foss-2015a.eb new file mode 100644 index 0000000000..6024ebbee4 --- /dev/null +++ b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-foss-2015a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'MPC' +version = '1.0.2' + +homepage = 'http://www.multiprecision.org/' +description = """Gnu Mpc is a C library for the arithmetic of + complex numbers with arbitrarily high precision and correct + rounding of the result. It extends the principles of the IEEE-754 + standard for fixed precision real floating point numbers to + complex numbers, providing well-defined semantics for every + operation. At the same time, speed of operation at high precision + is a major design goal.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['http://www.multiprecision.org/mpc/download/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('GMP', '5.1.3'), + ('MPFR', '3.1.2')] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libmpc.so', 'include/mpc.h'], + 'dirs': [] + } + +moduleclass = 'math' -- GitLab From c3212fb694a0705ba58f647dbd5543c2729f70b3 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 30 Jan 2015 15:40:09 +0100 Subject: [PATCH 0501/1217] Added GCC easyconfig for expat --- .../easyconfigs/e/expat/expat-2.1.0-GCC-4.9.2.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/e/expat/expat-2.1.0-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-GCC-4.9.2.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-GCC-4.9.2.eb new file mode 100644 index 0000000000..e10b56409e --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-GCC-4.9.2.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'expat' +version = '2.1.0' + +homepage = 'http://expat.sourceforge.net/' +description = """Expat is an XML parser library written in C. It is a stream-oriented parser in which an application + registers handlers for things the parser might find in the XML document (like start tags)""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +moduleclass = 'tools' -- GitLab From 2e964144fac6826c8b5e3c5db6ac9b4f8c4cb32b Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 30 Jan 2015 15:41:10 +0100 Subject: [PATCH 0502/1217] Added GCC easyconfig for gettext --- .../g/gettext/gettext-0.19.4-GCC-4.9.2.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/g/gettext/gettext-0.19.4-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.4-GCC-4.9.2.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.4-GCC-4.9.2.eb new file mode 100644 index 0000000000..7e8ff4e184 --- /dev/null +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.4-GCC-4.9.2.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'gettext' +version = '0.19.4' + +homepage = 'http://www.gnu.org/software/gettext/' +description = """GNU `gettext' is an important step for the GNU Translation Project, as it is an asset on which we may +build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools +and documentation""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = '--without-emacs' + +moduleclass = 'vis' -- GitLab From 0194c0bf5cf26ffbd5902cc9ca32a981d7557068 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 30 Jan 2015 15:51:11 +0100 Subject: [PATCH 0503/1217] Added GCC easyconfig for latest git 1.8.x --- .../g/git/git-1.8.5.6-GCC-4.9.2.eb | 45 +++++++++++++++++++ 1 file changed, 45 insertions(+) create mode 100644 easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb b/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb new file mode 100644 index 0000000000..e8677ef233 --- /dev/null +++ b/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb @@ -0,0 +1,45 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# Authors:: Dmitri Gribenko +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'git' +version = '1.8.5.6' + +homepage = 'http://git-scm.com/' +description = """Git is a free and open source distributed version control system designed +to handle everything from small to very large projects with speed and efficiency.""" +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +# eg. http://git-core.googlecode.com/files/git-1.8.2.tar.gz +sources = ['v%s.tar.gz' % version] +source_urls = ['https://github.com/git/git/archive'] + +preconfigopts = 'make configure && ' + +dependencies = [ + ('cURL', '7.40.0'), + ('expat', '2.1.0'), + ('gettext', '0.19.4'), +] + +sanity_check_paths = { + 'files': ['bin/git'], + 'dirs': [], +} + +# Work around git build system bug. If LIBS contains -lpthread, then configure +# will not append -lpthread to LDFLAGS, but Makefile ignores LIBS. +configopts = "--enable-pthreads='-lpthread'" + +moduleclass = 'tools' -- GitLab From 67a63f66e366455cd4bf4df14cb0c81297d97eae Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 30 Jan 2015 15:56:37 +0100 Subject: [PATCH 0504/1217] Added GCC easyconfig for git 2.x --- .../easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb | 45 +++++++++++++++++++ 1 file changed, 45 insertions(+) create mode 100644 easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb b/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb new file mode 100644 index 0000000000..bcd6e205c6 --- /dev/null +++ b/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb @@ -0,0 +1,45 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# Authors:: Dmitri Gribenko +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'git' +version = '2.2.2' + +homepage = 'http://git-scm.com/' +description = """Git is a free and open source distributed version control system designed +to handle everything from small to very large projects with speed and efficiency.""" +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +# eg. http://git-core.googlecode.com/files/git-1.8.2.tar.gz +sources = ['v%s.tar.gz' % version] +source_urls = ['https://github.com/git/git/archive'] + +preconfigopts = 'make configure && ' + +dependencies = [ + ('cURL', '7.40.0'), + ('expat', '2.1.0'), + ('gettext', '0.19.4'), +] + +sanity_check_paths = { + 'files': ['bin/git'], + 'dirs': [], +} + +# Work around git build system bug. If LIBS contains -lpthread, then configure +# will not append -lpthread to LDFLAGS, but Makefile ignores LIBS. +configopts = "--enable-pthreads='-lpthread'" + +moduleclass = 'tools' -- GitLab From 543f60b2d261760cd1fd24fa4dc2bb14ccdbbab6 Mon Sep 17 00:00:00 2001 From: gjbex Date: Fri, 30 Jan 2015 16:16:07 +0100 Subject: [PATCH 0505/1217] Added foss easyconfig for Mercurial 3.x --- ...Mercurial-3.2.4-foss-2014a-Python-2.7.9.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/m/Mercurial/Mercurial-3.2.4-foss-2014a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/m/Mercurial/Mercurial-3.2.4-foss-2014a-Python-2.7.9.eb b/easybuild/easyconfigs/m/Mercurial/Mercurial-3.2.4-foss-2014a-Python-2.7.9.eb new file mode 100644 index 0000000000..f9e0be44b5 --- /dev/null +++ b/easybuild/easyconfigs/m/Mercurial/Mercurial-3.2.4-foss-2014a-Python-2.7.9.eb @@ -0,0 +1,28 @@ +easyblock = "PythonPackage" + +name = 'Mercurial' +version = '3.2.4' + +homepage = 'http://mercurial.selenic.com/' +description = """Mercurial is a free, distributed source control management tool. It efficiently handles projects +of any size and offers an easy and intuitive interface. +""" +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['http://mercurial.selenic.com/release/'] +sources = [SOURCELOWER_TAR_GZ] + +python = "Python" +pythonversion = '2.7.9' +pythonshortversion = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [(python, pythonversion)] + +sanity_check_paths = { + 'files': ['bin/hg'], + 'dirs': ['lib/python%s/site-packages/mercurial' % pythonshortversion], +} + +moduleclass = 'tools' -- GitLab From eaa32794a2c70a15b76b614df5b66df88fb1b0e3 Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Fri, 30 Jan 2015 16:16:47 +0000 Subject: [PATCH 0506/1217] adding R dependencies for 2015a --- .../libjpeg-turbo-1.4.0-foss-2015a.eb | 24 ++++++++++++++ .../l/libpng/libpng-1.6.16-foss-2015a.eb | 19 ++++++++++++ .../n/NASM/NASM-2.11.06-foss-2015a.eb | 31 +++++++++++++++++++ 3 files changed, 74 insertions(+) create mode 100644 easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-foss-2015a.eb create mode 100644 easybuild/easyconfigs/l/libpng/libpng-1.6.16-foss-2015a.eb create mode 100644 easybuild/easyconfigs/n/NASM/NASM-2.11.06-foss-2015a.eb diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-foss-2015a.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-foss-2015a.eb new file mode 100644 index 0000000000..57eea7cba0 --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-foss-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.4.0' + +homepage = 'http://sourceforge.net/libjpeg-turbo/' +description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG +compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('NASM', '2.11.06'), +] + +configopts = "--with-jpeg8" +runtest = "test" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.16-foss-2015a.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.16-foss-2015a.eb new file mode 100644 index 0000000000..e0dd323091 --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.16-foss-2015a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.16' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-foss-2015a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-foss-2015a.eb new file mode 100644 index 0000000000..a9ff827237 --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-foss-2015a.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.11.06' + +homepage = 'http://www.nasm.us/' +description = """NASM: General-purpose x86 assembler""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' -- GitLab From 72ed3845015990581d1221e31def071690642196 Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Fri, 30 Jan 2015 16:17:18 +0000 Subject: [PATCH 0507/1217] version bump for BiocParallel and adding GMP as dep --- easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb index 16a52c2e37..0e010cb5cc 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb @@ -20,6 +20,7 @@ dependencies = [ ('libpng', '1.6.16'), # for plotting in R ('libjpeg-turbo', '1.4.0'), # for plottting in R ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it + ('GMP', '5.1.3'), ] name_tmpl = '%(name)s_%(version)s.tar.gz' @@ -220,7 +221,7 @@ exts_list = [ ('Biostrings', '2.34.1', bioconductor_options), ('GenomicRanges', '1.18.4', bioconductor_options), ('Rsamtools', '1.18.2', bioconductor_options), - ('BiocParallel', '1.0.0', bioconductor_options), + ('BiocParallel', '1.0.1', bioconductor_options), ('GenomicAlignments', '1.2.1', bioconductor_options), ('ShortRead', '1.24.0', bioconductor_options), ('graph', '1.44.1', bioconductor_options), -- GitLab From 4faed4c4494e6aed8ef2b76215d2cbae514fb792 Mon Sep 17 00:00:00 2001 From: Bart Verleye Date: Mon, 2 Feb 2015 11:49:34 +1300 Subject: [PATCH 0508/1217] dirty hack, but it works --- .../easyconfigs/b/{ => bsoft}/bsoft-1.8.8-goolf-1.5.14.eb | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) rename easybuild/easyconfigs/b/{ => bsoft}/bsoft-1.8.8-goolf-1.5.14.eb (91%) diff --git a/easybuild/easyconfigs/b/bsoft-1.8.8-goolf-1.5.14.eb b/easybuild/easyconfigs/b/bsoft/bsoft-1.8.8-goolf-1.5.14.eb similarity index 91% rename from easybuild/easyconfigs/b/bsoft-1.8.8-goolf-1.5.14.eb rename to easybuild/easyconfigs/b/bsoft/bsoft-1.8.8-goolf-1.5.14.eb index 666dd772d0..fb170b88ed 100644 --- a/easybuild/easyconfigs/b/bsoft-1.8.8-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/b/bsoft/bsoft-1.8.8-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -easyblock = 'CmdCp' +easyblock = 'MakeCp' name = 'bsoft' version = '1.8.8' @@ -16,8 +16,7 @@ toolchainopts = {'openmp': True} source_urls = ['http://lsbr.niams.nih.gov/bsoft/'] sources = ['%(name)s1_8_8.tar'] -cmds_map = [('./bmake', 'omp fftw=$EBROOTFFTW')] - +prebuildopts = [("./bmake omp fftw=$EBROOTFFTW #")] files_to_copy = [('bin')] sanity_check_paths = { -- GitLab From 60c00164f456a766ef063e8ae085dd537233ebbb Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 2 Feb 2015 05:28:58 +0100 Subject: [PATCH 0509/1217] switch to CmdCp in bsoft easyconfig + style fixes --- .../easyconfigs/b/bsoft/bsoft-1.8.8-goolf-1.5.14.eb | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/b/bsoft/bsoft-1.8.8-goolf-1.5.14.eb b/easybuild/easyconfigs/b/bsoft/bsoft-1.8.8-goolf-1.5.14.eb index fb170b88ed..5bba690060 100644 --- a/easybuild/easyconfigs/b/bsoft/bsoft-1.8.8-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/b/bsoft/bsoft-1.8.8-goolf-1.5.14.eb @@ -1,4 +1,4 @@ -easyblock = 'MakeCp' +easyblock = 'CmdCp' name = 'bsoft' version = '1.8.8' @@ -14,14 +14,14 @@ toolchain = {'name': 'goolf', 'version': '1.5.14'} toolchainopts = {'openmp': True} source_urls = ['http://lsbr.niams.nih.gov/bsoft/'] -sources = ['%(name)s1_8_8.tar'] +sources = ['%%(name)s%s.tar' % '_'.join(version.split('.'))] -prebuildopts = [("./bmake omp fftw=$EBROOTFFTW #")] -files_to_copy = [('bin')] +cmds_map = [('.*', "./bmake omp fftw=$EBROOTFFTW")] +files_to_copy = ['bin'] sanity_check_paths = { - 'files': [''], - 'dirs': ['bin'], + 'files': ['bin/brun', 'bin/bshow', 'bin/bview'], + 'dirs': [], } moduleclass = 'bio' -- GitLab From a70f6a73452951f1f8764251cd795534387f0453 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 2 Feb 2015 06:30:32 +0100 Subject: [PATCH 0510/1217] fix zlib dep versions in Tcl easyconfigs --- easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb | 2 +- easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb | 2 +- easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb index 25a490d28f..32fe48b93c 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-foss-2014b.eb @@ -13,7 +13,7 @@ source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] dependencies = [ - ('zlib', '1.2.7'), + ('zlib', '1.2.8'), ] configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb index c54aec7e60..ca1465be0b 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.12-intel-2014b.eb @@ -13,7 +13,7 @@ source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] dependencies = [ - ('zlib', '1.2.7'), + ('zlib', '1.2.8'), ] configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb index 7f7f55c666..78a978f384 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.5.15-ictce-5.3.0.eb @@ -13,7 +13,7 @@ source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] dependencies = [ - ('zlib', '1.2.7'), + ('zlib', '1.2.5'), ] configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' -- GitLab From 7389d94f608bf42a2eb65ee333dfa390ec389cef Mon Sep 17 00:00:00 2001 From: Bart Verleye Date: Tue, 3 Feb 2015 14:58:17 +1300 Subject: [PATCH 0511/1217] updated version for Eigen --- .../e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb new file mode 100644 index 0000000000..38b0fe9f28 --- /dev/null +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb @@ -0,0 +1,26 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'Eigen' +version = '3.2.2' + +homepage = 'http://eigen.tuxfamily.org/index.php?title=Main_Page' +description = """Eigen is a C++ template library for linear algebra: + matrices, vectors, numerical solvers, and related algorithms.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get'] +sources = ['%(version)s.tar.bz2'] + +moduleclass = 'math' -- GitLab From 63390225a972d544d52168c0604fa8f678737fcb Mon Sep 17 00:00:00 2001 From: Bart Verleye Date: Tue, 3 Feb 2015 15:09:53 +1300 Subject: [PATCH 0512/1217] upgrading ULF --- .../UFL-1.5.0-goolf-1.5.14-Python-2.7.8.eb | 30 +++++++++++++++++++ 1 file changed, 30 insertions(+) create mode 100644 easybuild/easyconfigs/u/UFL/UFL-1.5.0-goolf-1.5.14-Python-2.7.8.eb diff --git a/easybuild/easyconfigs/u/UFL/UFL-1.5.0-goolf-1.5.14-Python-2.7.8.eb b/easybuild/easyconfigs/u/UFL/UFL-1.5.0-goolf-1.5.14-Python-2.7.8.eb new file mode 100644 index 0000000000..dfe8b9eccf --- /dev/null +++ b/easybuild/easyconfigs/u/UFL/UFL-1.5.0-goolf-1.5.14-Python-2.7.8.eb @@ -0,0 +1,30 @@ +easyblock = "PythonPackage" + +name = 'UFL' +version = '1.5.0' + +homepage = 'https://launchpad.net/ufl' +description = """The Unified Form Language (UFL) is a domain specific language for declaration of finite element discretizations +of variational forms. More precisely, it defines a flexible interface for choosing finite element spaces and defining expressions +for weak forms in a notation close to mathematical notation.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +majorversion = "%s.x" % ".".join(version.split('.')[:-1]) +source_urls = ['https://bitbucket.org/fenics-project/ufl/downloads/'] +sources = [SOURCELOWER_TAR_GZ] + +python = "Python" +pythonversion = '2.7.8' +pythonshortversion = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [(python, pythonversion)] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ["form2ufl", "ufl2py", "ufl-analyse", "ufl-convert", "ufl-version"]], + 'dirs': ['lib/python%s/site-packages/ufl' % pythonshortversion] + } + +moduleclass = 'cae' -- GitLab From fef8592006a7d89cc3c464c688bd64d1168233fe Mon Sep 17 00:00:00 2001 From: Bart Verleye Date: Tue, 3 Feb 2015 15:25:16 +1300 Subject: [PATCH 0513/1217] Update UFL-1.5.0-goolf-1.5.14-Python-2.7.8.eb --- .../u/UFL/UFL-1.5.0-goolf-1.5.14-Python-2.7.8.eb | 14 ++++++++------ 1 file changed, 8 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/u/UFL/UFL-1.5.0-goolf-1.5.14-Python-2.7.8.eb b/easybuild/easyconfigs/u/UFL/UFL-1.5.0-goolf-1.5.14-Python-2.7.8.eb index dfe8b9eccf..e6e912f041 100644 --- a/easybuild/easyconfigs/u/UFL/UFL-1.5.0-goolf-1.5.14-Python-2.7.8.eb +++ b/easybuild/easyconfigs/u/UFL/UFL-1.5.0-goolf-1.5.14-Python-2.7.8.eb @@ -4,9 +4,11 @@ name = 'UFL' version = '1.5.0' homepage = 'https://launchpad.net/ufl' -description = """The Unified Form Language (UFL) is a domain specific language for declaration of finite element discretizations -of variational forms. More precisely, it defines a flexible interface for choosing finite element spaces and defining expressions -for weak forms in a notation close to mathematical notation.""" +description = """The Unified Form Language (UFL) is a domain specific language + for declaration of finite element discretizations of variational forms. + More precisely, it defines a flexible interface for choosing finite element + spaces and defining expressions for weak forms in a notation close to + mathematical notation.""" toolchain = {'name': 'goolf', 'version': '1.5.14'} @@ -23,8 +25,8 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [(python, pythonversion)] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ["form2ufl", "ufl2py", "ufl-analyse", "ufl-convert", "ufl-version"]], - 'dirs': ['lib/python%s/site-packages/ufl' % pythonshortversion] - } + 'files': ['bin/%s' % x for x in ["form2ufl", "ufl2py", "ufl-analyse", "ufl-convert", "ufl-version"]], + 'dirs': ['lib/python%s/site-packages/ufl' % pythonshortversion] +} moduleclass = 'cae' -- GitLab From cb72e773d51856979c831d9db1028820e8c5bf46 Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 08:49:58 +0100 Subject: [PATCH 0514/1217] Added intel easyconfig for FFTW --- .../f/FFTW/FFTW-3.3.4-intel-2015a.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2015a.eb diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2015a.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2015a.eb new file mode 100644 index 0000000000..ce8a9b16ca --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2015a.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +# no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' -- GitLab From 637e3228cd649088160ee6a0fd40567507c5ba8c Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 09:15:00 +0100 Subject: [PATCH 0515/1217] Added foss easyconfig for PCRE --- .../p/PCRE/PCRE-8.36-foss-2015a.eb | 20 +++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100644 easybuild/easyconfigs/p/PCRE/PCRE-8.36-foss-2015a.eb diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.36-foss-2015a.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.36-foss-2015a.eb new file mode 100644 index 0000000000..d43a790e2f --- /dev/null +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.36-foss-2015a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'PCRE' +version = '8.36' + +homepage = 'http://www.pcre.org/' +description = """ + The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax + and semantics as Perl 5. +""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +configopts = "--with-pic --disable-cpp" + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +moduleclass = 'devel' -- GitLab From c4874fee095c749e5e7d5a20ba3d8da01c85c0cc Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 13:22:39 +0100 Subject: [PATCH 0516/1217] Added foss easyconfig for Octave --- .../o/Octave/Octave-3.8.2-foss-2015a.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb diff --git a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb new file mode 100644 index 0000000000..150b37eaf0 --- /dev/null +++ b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb @@ -0,0 +1,26 @@ +name = 'Octave' +version = '3.8.2' + +homepage = 'http://www.gnu.org/software/octave/' +description = """GNU Octave is a high-level interpreted language, primarily intended for numerical computations.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://ftpmirror.gnu.org/octave/'] + +sanity_check_paths = { + 'files': ['bin/octave'], + 'dirs': [] +} + +configopts = ['--with-blas="-lopenblas"'] + +dependencies = [ + ('PCRE', '8.36'), + ('ncurses', '5.9'), + ('libreadline', '6.3'), +] + +moduleclass = 'math' + -- GitLab From 204e617d08eb2ce87f52052652f2163ef5a1c4a5 Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 13:53:14 +0100 Subject: [PATCH 0517/1217] Added GCC easyconfig for XZ --- .../easyconfigs/x/XZ/XZ-5.2.0-GCC-4.9.2.eb | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) create mode 100644 easybuild/easyconfigs/x/XZ/XZ-5.2.0-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/x/XZ/XZ-5.2.0-GCC-4.9.2.eb b/easybuild/easyconfigs/x/XZ/XZ-5.2.0-GCC-4.9.2.eb new file mode 100644 index 0000000000..5a6ed9b122 --- /dev/null +++ b/easybuild/easyconfigs/x/XZ/XZ-5.2.0-GCC-4.9.2.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'XZ' +version = '5.2.0' + +homepage = 'http://tukaani.org/xz/' +description = "xz: XZ utilities" + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://tukaani.org/xz/'] + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sanity_check_paths = { + 'files': ["bin/xz", "bin/lzmainfo"], + 'dirs': [] +} + +moduleclass = 'tools' -- GitLab From 54343d8faebbeaeb61054461be98e36e4bbe25d9 Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 13:55:26 +0100 Subject: [PATCH 0518/1217] Fixed style issues as per request --- .../easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb | 11 +++++------ 1 file changed, 5 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb index 150b37eaf0..25b2a7b0a9 100644 --- a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb +++ b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb @@ -9,11 +9,6 @@ toolchain = {'name': 'foss', 'version': '2015a'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://ftpmirror.gnu.org/octave/'] -sanity_check_paths = { - 'files': ['bin/octave'], - 'dirs': [] -} - configopts = ['--with-blas="-lopenblas"'] dependencies = [ @@ -22,5 +17,9 @@ dependencies = [ ('libreadline', '6.3'), ] -moduleclass = 'math' +sanity_check_paths = { + 'files': ['bin/octave'], + 'dirs': [] +} +moduleclass = 'math' -- GitLab From 277d7e0dbf695d7c9b417e342661f9e95ebf4a6d Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 13:55:56 +0100 Subject: [PATCH 0519/1217] Fixed style issues as per request --- easybuild/easyconfigs/p/PCRE/PCRE-8.36-foss-2015a.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.36-foss-2015a.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.36-foss-2015a.eb index d43a790e2f..dd7d330b7c 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.36-foss-2015a.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.36-foss-2015a.eb @@ -12,9 +12,9 @@ description = """ toolchain = {'name': 'foss', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True} -configopts = "--with-pic --disable-cpp" - source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] +configopts = "--with-pic --disable-cpp" + moduleclass = 'devel' -- GitLab From f448096adc29c302039c50a5c4b556614e3ef04f Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 3 Feb 2015 14:10:41 +0100 Subject: [PATCH 0520/1217] Add usefull comment about binutils --- easybuild/easyconfigs/f/foss/foss-2015.01.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/f/foss/foss-2015.01.eb b/easybuild/easyconfigs/f/foss/foss-2015.01.eb index 411ab43736..dfce67f25b 100644 --- a/easybuild/easyconfigs/f/foss/foss-2015.01.eb +++ b/easybuild/easyconfigs/f/foss/foss-2015.01.eb @@ -26,6 +26,7 @@ comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) # compiler toolchain depencies # we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain # because of toolchain preperation functions +# For binutils, stick to http://wiki.osdev.org/Cross-Compiler_Successful_Builds dependencies = [ comp, ('zlib', '1.2.8', '', comp), -- GitLab From a5778bf7ba50e3c04f4c101dc1ccd5ca1585aefa Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 14:24:11 +0100 Subject: [PATCH 0521/1217] Fixed BLAS library flags style issue --- easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb index 25b2a7b0a9..ca0386a404 100644 --- a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb +++ b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb @@ -9,7 +9,7 @@ toolchain = {'name': 'foss', 'version': '2015a'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://ftpmirror.gnu.org/octave/'] -configopts = ['--with-blas="-lopenblas"'] +configopts = ['--with-blas="${LIBBLAS}"'] dependencies = [ ('PCRE', '8.36'), -- GitLab From 18138b2bb26393b4bce19e839835d04d92520f20 Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 14:28:24 +0100 Subject: [PATCH 0522/1217] Added GCC easyconfig for Coreutils --- .../c/Coreutils/Coreutils-8.23-GCC-4.9.2.eb | 21 +++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 easybuild/easyconfigs/c/Coreutils/Coreutils-8.23-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/c/Coreutils/Coreutils-8.23-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Coreutils/Coreutils-8.23-GCC-4.9.2.eb new file mode 100644 index 0000000000..da397d5d5e --- /dev/null +++ b/easybuild/easyconfigs/c/Coreutils/Coreutils-8.23-GCC-4.9.2.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = "Coreutils" +version = "8.23" + +homepage = 'http://www.gnu.org/software/coreutils/' +description = """The GNU Core Utilities are the basic file, shell and text manipulation utilities of the + GNU operating system. These are the core utilities which are expected to exist on every operating system.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_XZ] + +sanity_check_paths = { + 'files': ['bin/sort', 'bin/echo', 'bin/du', 'bin/date', 'bin/true'], + 'dirs': [] +} + +moduleclass = 'tools' -- GitLab From f19fa0f1641dff338b1dff465fa0d4974f393b17 Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 14:54:24 +0100 Subject: [PATCH 0523/1217] Added GCC easyconfig for mc --- .../easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb | 33 +++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb b/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb new file mode 100644 index 0000000000..ef4c9cf3a2 --- /dev/null +++ b/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'mc' +version = '4.8.13' + +homepage = 'https://www.midnight-commander.org/' +description = """mc-4.6.1: User-friendly file manager and visual shell""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = ['%(version)s.tar.gz'] +source_urls = ['https://github.com/MidnightCommander/mc/archive/'] + +preconfigopts = './autogen.sh && ' + +sanity_check_paths = { + 'files': ['bin/mc'], + 'dirs': [] +} + +moduleclass = 'tools' -- GitLab From 7ee9bcd55131b71386aea71d086be71cd0e21276 Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 14:57:21 +0100 Subject: [PATCH 0524/1217] Fixed style issues as per request --- easybuild/easyconfigs/m/MPC/MPC-1.0.2-foss-2015a.eb | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/m/MPC/MPC-1.0.2-foss-2015a.eb b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-foss-2015a.eb index 6024ebbee4..d5449c24a4 100644 --- a/easybuild/easyconfigs/m/MPC/MPC-1.0.2-foss-2015a.eb +++ b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-foss-2015a.eb @@ -17,14 +17,16 @@ toolchain = {'name': 'foss', 'version': '2015a'} source_urls = ['http://www.multiprecision.org/mpc/download/'] sources = [SOURCELOWER_TAR_GZ] -dependencies = [('GMP', '5.1.3'), - ('MPFR', '3.1.2')] +dependencies = [ + ('GMP', '5.1.3'), + ('MPFR', '3.1.2'), +] runtest = 'check' sanity_check_paths = { 'files': ['lib/libmpc.so', 'include/mpc.h'], - 'dirs': [] - } + 'dirs': [], +} moduleclass = 'math' -- GitLab From 5f37d6f259c244941c2c388fd4a543bf077052f7 Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 15:28:41 +0100 Subject: [PATCH 0525/1217] Fixed some more style issues --- easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb index ca0386a404..e311f5fe2d 100644 --- a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb +++ b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb @@ -6,10 +6,10 @@ description = """GNU Octave is a high-level interpreted language, primarily inte toolchain = {'name': 'foss', 'version': '2015a'} -sources = [SOURCELOWER_TAR_GZ] +sources = [GNU_SOURCE] source_urls = ['http://ftpmirror.gnu.org/octave/'] -configopts = ['--with-blas="${LIBBLAS}"'] +configopts = '--with-blas="${LIBBLAS}"' dependencies = [ ('PCRE', '8.36'), -- GitLab From 0f0aee950c720a5ce5f56465558d802399288438 Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 16:22:20 +0100 Subject: [PATCH 0526/1217] Fixed style issue as per request --- easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb b/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb index e8677ef233..7360f033fe 100644 --- a/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/git/git-1.8.5.6-GCC-4.9.2.eb @@ -19,6 +19,7 @@ version = '1.8.5.6' homepage = 'http://git-scm.com/' description = """Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.""" + toolchain = {'name': 'GCC', 'version': '4.9.2'} # eg. http://git-core.googlecode.com/files/git-1.8.2.tar.gz -- GitLab From c3511d9aed4e00f613a2a01d503c7b1ef3c8dd7c Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 16:22:59 +0100 Subject: [PATCH 0527/1217] Fixed style issue as per request --- easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb b/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb index bcd6e205c6..cb7b6916f1 100644 --- a/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb @@ -19,6 +19,7 @@ version = '2.2.2' homepage = 'http://git-scm.com/' description = """Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.""" + toolchain = {'name': 'GCC', 'version': '4.9.2'} # eg. http://git-core.googlecode.com/files/git-1.8.2.tar.gz -- GitLab From 6800080372310175336978cb3a636611752ccb6c Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 16:23:36 +0100 Subject: [PATCH 0528/1217] Fixed style issue as per request --- .../m/Mercurial/Mercurial-3.2.4-foss-2014a-Python-2.7.9.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/m/Mercurial/Mercurial-3.2.4-foss-2014a-Python-2.7.9.eb b/easybuild/easyconfigs/m/Mercurial/Mercurial-3.2.4-foss-2014a-Python-2.7.9.eb index f9e0be44b5..047324c714 100644 --- a/easybuild/easyconfigs/m/Mercurial/Mercurial-3.2.4-foss-2014a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/m/Mercurial/Mercurial-3.2.4-foss-2014a-Python-2.7.9.eb @@ -7,6 +7,7 @@ homepage = 'http://mercurial.selenic.com/' description = """Mercurial is a free, distributed source control management tool. It efficiently handles projects of any size and offers an easy and intuitive interface. """ + toolchain = {'name': 'foss', 'version': '2015a'} source_urls = ['http://mercurial.selenic.com/release/'] -- GitLab From 16875304f45994aa81959b2cc8ed83540816062a Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 16:33:22 +0100 Subject: [PATCH 0529/1217] Added GCC easyconfig for GLib --- .../g/GLib/GLib-2.42.1-GCC-4.9.2.eb | 21 +++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 easybuild/easyconfigs/g/GLib/GLib-2.42.1-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.42.1-GCC-4.9.2.eb b/easybuild/easyconfigs/g/GLib/GLib-2.42.1-GCC-4.9.2.eb new file mode 100644 index 0000000000..abd733597e --- /dev/null +++ b/easybuild/easyconfigs/g/GLib/GLib-2.42.1-GCC-4.9.2.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'GLib' +version = '2.42.1' + +homepage = 'http://www.gtk.org/' +description = """GLib is one of the base libraries of the GTK+ project""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://ftp.gnome.org/pub/gnome/sources/glib/%(version_major_minor)s/'] +sources = ['glib-%(version)s.tar.xz'] + +dependencies = [ + ('libffi', '3.2.1'), + ('gettext', '0.19.4'), +] +builddependencies = [('Python', '2.7.9')] + +moduleclass = 'vis' -- GitLab From 30a952abae6a03b1836f4cdeb2120814cdfa3395 Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 17:08:51 +0100 Subject: [PATCH 0530/1217] Added GCC easyconfig for GLib, libffi, S_Lang --- .../g/GLib/GLib-2.42.1-GCC-4.9.2.eb | 2 +- .../l/libffi/libffi-3.2.1-GCC-4.9.2.eb | 23 +++++++++++++++++++ .../s/S_Lang/S_Lang-2.3.0-GCC-4.9.2.eb | 22 ++++++++++++++++++ 3 files changed, 46 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/s/S_Lang/S_Lang-2.3.0-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.42.1-GCC-4.9.2.eb b/easybuild/easyconfigs/g/GLib/GLib-2.42.1-GCC-4.9.2.eb index abd733597e..78ac531e4f 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.42.1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.42.1-GCC-4.9.2.eb @@ -16,6 +16,6 @@ dependencies = [ ('libffi', '3.2.1'), ('gettext', '0.19.4'), ] -builddependencies = [('Python', '2.7.9')] +builddependencies = [('Python', '2.7.9', '', ('foss', '2015a'))] moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCC-4.9.2.eb new file mode 100644 index 0000000000..b980f40d3e --- /dev/null +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'libffi' +version = '3.2.1' + +homepage = 'http://sourceware.org/libffi/' +description = """The libffi library provides a portable, high level programming interface to various calling +conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = [ + 'ftp://sourceware.org/pub/libffi/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', +] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/s/S_Lang/S_Lang-2.3.0-GCC-4.9.2.eb b/easybuild/easyconfigs/s/S_Lang/S_Lang-2.3.0-GCC-4.9.2.eb new file mode 100644 index 0000000000..697f40c689 --- /dev/null +++ b/easybuild/easyconfigs/s/S_Lang/S_Lang-2.3.0-GCC-4.9.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'S_Lang' +version = '2.3.0' + +homepage = 'http://www.jedsoft.org/slang/' +description = """S-Lang is a multi-platform programmer's library designed to allow + a developer to create robust multi-platform software. It provides facilities + required by interactive applications such as display/screen management, keyboard + input, keymaps, and so on.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = ['slang-%(version)s.tar.gz'] +source_urls = ['http://www.jedsoft.org/releases/slang/'] + +sanity_check_paths = { + 'files': ['include/slang.h', 'bin/slsh', 'lib/libslang.so'], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From f3beb86c8fcb65f45d9f994e49cb123eb9bb8f47 Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 17:13:04 +0100 Subject: [PATCH 0531/1217] Finished mc --- easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb b/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb index ef4c9cf3a2..a8c6ce238b 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb @@ -23,6 +23,11 @@ toolchain = {'name': 'GCC', 'version': '4.9.2'} sources = ['%(version)s.tar.gz'] source_urls = ['https://github.com/MidnightCommander/mc/archive/'] +dependencies = [ + ('GLib', '2.42.1'), + ('S_Lang', '2.3.0'), +] + preconfigopts = './autogen.sh && ' sanity_check_paths = { -- GitLab From c23974e96bd2d795aaf6b21318e79cfbfe0985ba Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 17:24:38 +0100 Subject: [PATCH 0532/1217] Added GCC easyconfig for libevent --- .../l/libevent/libevent-2.0.22-GCC-4.9.2.eb | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) create mode 100644 easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb new file mode 100644 index 0000000000..35bf28ab3b --- /dev/null +++ b/easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'libevent' +version = '2.0.22' + +homepage = 'http://libevent.org/' +description = """The libevent API provides a mechanism to execute a callback function when a specific + event occurs on a file descriptor or after a timeout has been reached. + Furthermore, libevent also support callbacks due to signals or regular timeouts.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = ['https://github.com/downloads/libevent/libevent/'] +sources = ['%(name)s-%(version)s-stable.tar.gz'] +source_urls = ['https://sourceforge.net/projects/levent/files/%(name)s/%(name)s-2.0/'] + +moduleclass = 'lib' -- GitLab From 6aa2b514c275e1b6f08c3258188cda3977c77db2 Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Feb 2015 17:28:46 +0100 Subject: [PATCH 0533/1217] Added GCC easyconfig for tmux --- .../easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb b/easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb new file mode 100644 index 0000000000..ba34aab87a --- /dev/null +++ b/easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'tmux' +version = '1.9a' + +homepage = 'http://tmux.sourceforge.net/' +description = """tmux is a terminal multiplexer. It lets you switch easily +between several programs in one terminal, detach them (they keep running in the background) and reattach them to a different terminal.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchainopts = {'optarch': True} + +#http://sourceforge.net/projects/tmux/files/tmux/tmux-1.9/tmux-1.9a.tar.gz/download +sources = [SOURCE_TAR_GZ] +source_urls = ['http://downloads.sourceforge.net/%(name)s/'] + +dependencies = [ + ('libevent', '2.0.22'), +] + +sanity_check_paths = { + 'files': ['bin/tmux'], + 'dirs': ['bin'] +} + +moduleclass = 'tools' -- GitLab From 222cdfd7da765c4a54921b5dce61cbb13b9ab9de Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Tue, 3 Feb 2015 16:34:19 +0000 Subject: [PATCH 0534/1217] removing gmp and gl dependencies --- easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb | 6 +----- 1 file changed, 1 insertion(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb index 0e010cb5cc..fc8a268e2c 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb @@ -20,7 +20,6 @@ dependencies = [ ('libpng', '1.6.16'), # for plotting in R ('libjpeg-turbo', '1.4.0'), # for plottting in R ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it - ('GMP', '5.1.3'), ] name_tmpl = '%(name)s_%(version)s.tar.gz' @@ -280,9 +279,6 @@ exts_list = [ ('np', '0.60-2', ext_options), ('polynom', '1.3-8', ext_options), ('partitions', '1.9-15', ext_options), - ('rgl', '0.95.1201', ext_options), - ('phangorn', '1.99-11', ext_options), - ('phytools', '0.4-31', ext_options), ('vegan', '2.2-0', ext_options), ('picante', '1.6-2', ext_options), ('quantreg', '5.05', ext_options), @@ -372,7 +368,6 @@ exts_list = [ ('genoset', '1.20.0', bioconductor_options), ('RGCCA', '2.0', ext_options), ('pheatmap', '0.7.7', ext_options), - ('mixOmics', '5.0-3', ext_options), ('multtest', '2.22.0', bioconductor_options), ('NOISeq', '2.8.0', bioconductor_options), ('openxlsx', '2.2.1', ext_options), @@ -387,3 +382,4 @@ exts_list = [ ] moduleclass = 'lang' + -- GitLab From cd5927e2754be0c76e53813b7e3b857336334a24 Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Tue, 3 Feb 2015 19:52:01 +0000 Subject: [PATCH 0535/1217] remove gmp extension --- easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb index fc8a268e2c..d5984e2bae 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb @@ -269,7 +269,6 @@ exts_list = [ ('fossil', '0.3.7', ext_options), ('geiger', '2.0.3', ext_options), ('glmnet', '1.9-8', ext_options), - ('gmp', '0.5-12', ext_options), ('labdsv', '1.6-1', ext_options), ('MatrixModels', '0.3-1.1', ext_options), ('stabs', '0.5-0', ext_options), -- GitLab From c360434e3c5a7cc489ee5a4cbe74a81b8e3460e6 Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Tue, 3 Feb 2015 19:53:54 +0000 Subject: [PATCH 0536/1217] removing GMP EB --- .../easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb | 25 ------------------- 1 file changed, 25 deletions(-) delete mode 100644 easybuild/easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb b/easybuild/easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb deleted file mode 100644 index c7f00d04ae..0000000000 --- a/easybuild/easyconfigs/g/GMP/GMP-5.1.3-foss-2015a.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'GMP' -version = '5.1.3' - -homepage = 'http://gmplib.org/' -description = """GMP is a free library for arbitrary precision arithmetic, -operating on signed integers, rational numbers, and floating point numbers. """ - -toolchain = {'name': 'foss', 'version': '2015a'} - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = ['http://ftp.gnu.org/gnu/gmp'] - -# enable C++ interface -configopts = '--enable-cxx' - -runtest = 'check' - -sanity_check_paths = { - 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], - 'dirs': [], -} - -moduleclass = 'math' -- GitLab From 073c6bbe684e3065dc81c5628fe7f0a463b3bd7c Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 4 Feb 2015 08:32:43 +0100 Subject: [PATCH 0537/1217] Added GCC easyconfig for mawk --- .../m/mawk/mawk-1.3.4-20141206-GCC-4.9.2.eb | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) create mode 100644 easybuild/easyconfigs/m/mawk/mawk-1.3.4-20141206-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/m/mawk/mawk-1.3.4-20141206-GCC-4.9.2.eb b/easybuild/easyconfigs/m/mawk/mawk-1.3.4-20141206-GCC-4.9.2.eb new file mode 100644 index 0000000000..1c23e63925 --- /dev/null +++ b/easybuild/easyconfigs/m/mawk/mawk-1.3.4-20141206-GCC-4.9.2.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'mawk' +version = '1.3.4-20141206' + +homepage = 'http://invisible-island.net/mawk/mawk.html' +description = """mawk is an interpreter for the AWK Programming Language.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TGZ] +source_urls = ['ftp://invisible-island.net/mawk'] + +sanity_check_paths = { + 'files': ['bin/mawk'], + 'dirs': ["bin"] +} + +moduleclass = 'tools' -- GitLab From e8ae9f719bf32a2369c01b27c571b77aabc839a0 Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 4 Feb 2015 09:03:12 +0100 Subject: [PATCH 0538/1217] Added intel easyconfig for libxml2 --- .../l/libxml2/libxml2-2.9.2-intel-2015a.eb | 23 +++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a.eb diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a.eb new file mode 100644 index 0000000000..84a2d133c6 --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'libxml2' +version = '2.9.2' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and +toolchain developed for the Gnome project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' + +dependencies = [('zlib', '1.2.8')] + +moduleclass = 'lib' -- GitLab From e157f4712464694e7b28a32998703339ed2bb815 Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 4 Feb 2015 09:03:36 +0100 Subject: [PATCH 0539/1217] Added intel easyconfig for libxslt --- .../l/libxslt/libxslt-1.1.28-intel-2015a.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-intel-2015a.eb diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-intel-2015a.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-intel-2015a.eb new file mode 100644 index 0000000000..31f8acfbc8 --- /dev/null +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-intel-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libxslt' +version = '1.1.28' + +homepage = 'http://xmlsoft.org/' +description = """Libxslt is the XSLT C library developed for the GNOME project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] + +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('zlib', '1.2.8'), + ('libxml2', '2.9.2'), +] + +moduleclass = 'lib' -- GitLab From 6729a30ed28896f3657cb9a2ebe628de5cb229eb Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 4 Feb 2015 09:05:12 +0100 Subject: [PATCH 0540/1217] Added foss easyconfig for libxslt --- .../l/libxslt/libxslt-1.1.28-foss-2015a.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-foss-2015a.eb diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-foss-2015a.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-foss-2015a.eb new file mode 100644 index 0000000000..c643283ea5 --- /dev/null +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-foss-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libxslt' +version = '1.1.28' + +homepage = 'http://xmlsoft.org/' +description = """Libxslt is the XSLT C library developed for the GNOME project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] + +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('zlib', '1.2.8'), + ('libxml2', '2.9.2'), +] + +moduleclass = 'lib' -- GitLab From c46a7c5fd41abee7d22676d04fa3933eeab037b2 Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 4 Feb 2015 09:13:14 +0100 Subject: [PATCH 0541/1217] Renamed S_Lang to S-Lang --- .../S-Lang-2030-GCC-4.9.2.eb} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/s/{S_Lang/S_Lang-2.3.0-GCC-4.9.2.eb => S-Lang/S-Lang-2030-GCC-4.9.2.eb} (97%) diff --git a/easybuild/easyconfigs/s/S_Lang/S_Lang-2.3.0-GCC-4.9.2.eb b/easybuild/easyconfigs/s/S-Lang/S-Lang-2030-GCC-4.9.2.eb similarity index 97% rename from easybuild/easyconfigs/s/S_Lang/S_Lang-2.3.0-GCC-4.9.2.eb rename to easybuild/easyconfigs/s/S-Lang/S-Lang-2030-GCC-4.9.2.eb index 697f40c689..d5d02f5692 100644 --- a/easybuild/easyconfigs/s/S_Lang/S_Lang-2.3.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/s/S-Lang/S-Lang-2030-GCC-4.9.2.eb @@ -1,6 +1,6 @@ easyblock = 'ConfigureMake' -name = 'S_Lang' +name = 'S-Lang' version = '2.3.0' homepage = 'http://www.jedsoft.org/slang/' -- GitLab From 90e9ce9cb252171d4596f885f569c473508b9494 Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 4 Feb 2015 09:30:13 +0100 Subject: [PATCH 0542/1217] Fixed dependency for S-Lang rename --- easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb b/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb index a8c6ce238b..c3b1a15562 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb @@ -25,7 +25,7 @@ source_urls = ['https://github.com/MidnightCommander/mc/archive/'] dependencies = [ ('GLib', '2.42.1'), - ('S_Lang', '2.3.0'), + ('S-Lang', '2.3.0'), ] preconfigopts = './autogen.sh && ' -- GitLab From 2c984337e09add925ad4eac05d6a23859efaf5b7 Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 4 Feb 2015 09:41:52 +0100 Subject: [PATCH 0543/1217] Added intel easyconfig for Xerces C++ --- .../Xerces-C++-3.1.1-intel-2015a.eb | 19 +++++++++++++++++++ 1 file changed, 19 insertions(+) create mode 100644 easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb diff --git a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb new file mode 100644 index 0000000000..3deed28bad --- /dev/null +++ b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb @@ -0,0 +1,19 @@ +name = 'Xerces-C++' +version = '3.1.1' + +homepage = 'http://xerces.apache.org/xerces-c/' +description = """Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = ['xerces-c-%(version)s.tar.gz'] +source_urls = [ + 'http://apache.belnet.be/xerces/c/3/sources/' +] + + +dependencies = [ + ('cURL', '7.40.0'), +] + +moduleclass = 'lib' -- GitLab From 6bd8301b5afcb108bd69fa3c483d2e8069b26301 Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 4 Feb 2015 09:46:19 +0100 Subject: [PATCH 0544/1217] Added foss easyconfig for cURL --- .../c/cURL/cURL-7.40.0-foss-2015a.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/c/cURL/cURL-7.40.0-foss-2015a.eb diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-foss-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-foss-2015a.eb new file mode 100644 index 0000000000..a8c7d1b972 --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-foss-2015a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.40.0' + +homepage = 'http://curl.haxx.se' +description = """libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, + POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports + SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, + proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, + Kerberos), file transfer resume, http proxy tunneling and more.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://curl.haxx.se/download/'] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' -- GitLab From c289a2e64a2283f5b793a3f29a79ee0555fc1900 Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 4 Feb 2015 09:50:06 +0100 Subject: [PATCH 0545/1217] Added foss easyconfig for Xerces C++ --- .../Xerces-C++/Xerces-C++-3.1.1-foss-2015a.eb | 21 +++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-foss-2015a.eb diff --git a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-foss-2015a.eb b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-foss-2015a.eb new file mode 100644 index 0000000000..d8a60cefb4 --- /dev/null +++ b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-foss-2015a.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Xerces-C++' +version = '3.1.1' + +homepage = 'http://xerces.apache.org/xerces-c/' +description = """Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = ['xerces-c-%(version)s.tar.gz'] +source_urls = [ + 'http://apache.belnet.be/xerces/c/3/sources/' +] + + +dependencies = [ + ('cURL', '7.40.0'), +] + +moduleclass = 'lib' -- GitLab From ccd13ac7bccf618242acf9a0febcfad396dfbb76 Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 4 Feb 2015 09:57:37 +0100 Subject: [PATCH 0546/1217] Added intel easyconfig for XQilla --- .../x/XQilla/XQilla-2.3.0-intel-2015a.eb | 22 +++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 easybuild/easyconfigs/x/XQilla/XQilla-2.3.0-intel-2015a.eb diff --git a/easybuild/easyconfigs/x/XQilla/XQilla-2.3.0-intel-2015a.eb b/easybuild/easyconfigs/x/XQilla/XQilla-2.3.0-intel-2015a.eb new file mode 100644 index 0000000000..b169cb5840 --- /dev/null +++ b/easybuild/easyconfigs/x/XQilla/XQilla-2.3.0-intel-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'XQilla' +version = '2.3.0' + +homepage = 'http://xqilla.sourceforge.net/HomePage' +description = """XQilla is an XQuery and XPath 2 library and command line utility written in C++, implemented on top of the Xerces-C∞ library.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [ + 'http://downloads.sourceforge.net/project/xqilla/xqilla/%s' % version, +] + +configopts = '--with-xerces=$EBROOTXERCESMINCPLUSPLUS' + +dependencies = [ + ('Xerces-C++', '3.1.1'), +] + +moduleclass = 'lib' -- GitLab From a461142bb905092ee42f8d3ab5f9d1fe328ccb9b Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 4 Feb 2015 09:59:59 +0100 Subject: [PATCH 0547/1217] Added foss easyconfig for XQilla --- .../x/XQilla/XQilla-2.3.0-foss-2015a.eb | 22 +++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 easybuild/easyconfigs/x/XQilla/XQilla-2.3.0-foss-2015a.eb diff --git a/easybuild/easyconfigs/x/XQilla/XQilla-2.3.0-foss-2015a.eb b/easybuild/easyconfigs/x/XQilla/XQilla-2.3.0-foss-2015a.eb new file mode 100644 index 0000000000..aa79e51474 --- /dev/null +++ b/easybuild/easyconfigs/x/XQilla/XQilla-2.3.0-foss-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'XQilla' +version = '2.3.0' + +homepage = 'http://xqilla.sourceforge.net/HomePage' +description = """XQilla is an XQuery and XPath 2 library and command line utility written in C++, implemented on top of the Xerces-C∞ library.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [ + 'http://downloads.sourceforge.net/project/xqilla/xqilla/%s' % version, +] + +configopts = '--with-xerces=$EBROOTXERCESMINCPLUSPLUS' + +dependencies = [ + ('Xerces-C++', '3.1.1'), +] + +moduleclass = 'lib' -- GitLab From a323bb4dff57c7e633fe6fb6cbea03adfe4cc156 Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 4 Feb 2015 10:28:07 +0100 Subject: [PATCH 0548/1217] Added missing easyblock directive --- .../easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb index 3deed28bad..458d80e62e 100644 --- a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb +++ b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Xerces-C++' version = '3.1.1' -- GitLab From e13ea007186459d14df6500550a0d302164abb3a Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 4 Feb 2015 14:02:47 +0100 Subject: [PATCH 0549/1217] Added GCC easybuild for Emacs --- .../e/Emacs/Emacs-24.4-GCC-4.9.2.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/e/Emacs/Emacs-24.4-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/e/Emacs/Emacs-24.4-GCC-4.9.2.eb b/easybuild/easyconfigs/e/Emacs/Emacs-24.4-GCC-4.9.2.eb new file mode 100644 index 0000000000..70d51139b0 --- /dev/null +++ b/easybuild/easyconfigs/e/Emacs/Emacs-24.4-GCC-4.9.2.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'Emacs' +version = '24.4' + +homepage = 'http://www.gnu.org/software/emacs/' +description = """GNU Emacs is an extensible, customizable text editor—and more. + At its core is an interpreter for Emacs Lisp, a dialect of the Lisp programming language + with extensions to support text editing.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchainopts = {} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [ + ('ncurses', '5.9'), +] + +configopts = '--with-gif=no --with-tiff=no --with-x-toolkit=no --with-xpm=no ' + +sanity_check_paths = { + 'files': ["bin/emacs", "bin/emacs-%(version)s", "bin/emacsclient", "bin/etags"], + 'dirs': [] +} + +moduleclass = 'tools' -- GitLab From 28b8df7dbcffa026033b33c9560526af67f82734 Mon Sep 17 00:00:00 2001 From: gjbex Date: Wed, 4 Feb 2015 14:07:04 +0100 Subject: [PATCH 0550/1217] Added GCC easyconfig for Doxygen --- .../d/Doxygen/Doxygen-1.8.9.1-GCC-4.9.2.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.9.1-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.9.1-GCC-4.9.2.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.9.1-GCC-4.9.2.eb new file mode 100644 index 0000000000..1cb88eb2d0 --- /dev/null +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.9.1-GCC-4.9.2.eb @@ -0,0 +1,18 @@ +name = 'Doxygen' +version = '1.8.9.1' + +homepage = 'http://www.doxygen.org' +description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, + IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = ['%(namelower)s-%(version)s.src.tar.gz'] +source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.3'), +] + +moduleclass = 'devel' -- GitLab From 44be1367a0e6d75236eae6be15cd0c976bb07fa3 Mon Sep 17 00:00:00 2001 From: Geert Jan BEX Date: Wed, 4 Feb 2015 15:10:54 +0100 Subject: [PATCH 0551/1217] Fixed style issue as per request --- easybuild/easyconfigs/e/Emacs/Emacs-24.4-GCC-4.9.2.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/e/Emacs/Emacs-24.4-GCC-4.9.2.eb b/easybuild/easyconfigs/e/Emacs/Emacs-24.4-GCC-4.9.2.eb index 70d51139b0..ceb01e01dd 100644 --- a/easybuild/easyconfigs/e/Emacs/Emacs-24.4-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/e/Emacs/Emacs-24.4-GCC-4.9.2.eb @@ -9,7 +9,6 @@ description = """GNU Emacs is an extensible, customizable text editor—and more with extensions to support text editing.""" toolchain = {'name': 'GCC', 'version': '4.9.2'} -toolchainopts = {} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] -- GitLab From 5eb860c0ee5d4c1f097c3d7df320003cc9e89a3d Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Wed, 4 Feb 2015 14:48:54 -0500 Subject: [PATCH 0552/1217] bumping versions that have disappeared from Bioconductor and removing partitions(gmp) and vegan(tcl/tk) for deps --- easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb index d5984e2bae..62367a74a4 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb @@ -220,7 +220,7 @@ exts_list = [ ('Biostrings', '2.34.1', bioconductor_options), ('GenomicRanges', '1.18.4', bioconductor_options), ('Rsamtools', '1.18.2', bioconductor_options), - ('BiocParallel', '1.0.1', bioconductor_options), + ('BiocParallel', '1.0.2', bioconductor_options), ('GenomicAlignments', '1.2.1', bioconductor_options), ('ShortRead', '1.24.0', bioconductor_options), ('graph', '1.44.1', bioconductor_options), @@ -277,8 +277,6 @@ exts_list = [ ('nor1mix', '1.2-0', ext_options), ('np', '0.60-2', ext_options), ('polynom', '1.3-8', ext_options), - ('partitions', '1.9-15', ext_options), - ('vegan', '2.2-0', ext_options), ('picante', '1.6-2', ext_options), ('quantreg', '5.05', ext_options), ('RcppEigen', '0.3.2.3.0', ext_options), @@ -315,7 +313,7 @@ exts_list = [ ('limma', '3.22.4', bioconductor_options), ('RBGL', '1.42.0', bioconductor_options), ('org.Hs.eg.db', '3.0.0', bioconductor_options), - ('AnnotationForge', '1.8.1', bioconductor_options), + ('AnnotationForge', '1.8.2', bioconductor_options), ('KEGG.db', '3.0.0', bioconductor_options), ('annaffy', '1.38.0', bioconductor_options), ('gcrma', '2.38.0', bioconductor_options), -- GitLab From 70d2b775d52c9544fb588771005f66334eec8228 Mon Sep 17 00:00:00 2001 From: Bart Verleye Date: Thu, 5 Feb 2015 16:30:35 +1300 Subject: [PATCH 0553/1217] Update Eigen-3.2.2-goolf-1.5.14.eb Using BITBUCKET_SOURCE. --- easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb index 38b0fe9f28..024205f8b6 100644 --- a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.2-goolf-1.5.14.eb @@ -20,7 +20,7 @@ description = """Eigen is a C++ template library for linear algebra: toolchain = {'name': 'goolf', 'version': '1.5.14'} toolchainopts = {'optarch': True, 'pic': True} -source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get'] +source_urls = [BITBUCKET_SOURCE] sources = ['%(version)s.tar.bz2'] moduleclass = 'math' -- GitLab From 3726f433eab8eb42c11e0197eec3be83e778e0db Mon Sep 17 00:00:00 2001 From: Bart Verleye Date: Thu, 5 Feb 2015 16:35:18 +1300 Subject: [PATCH 0554/1217] adding python file --- .../p/Python/Python-2.7.8-goolf-1.5.14.eb | 160 ++++++++++++++++++ 1 file changed, 160 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb new file mode 100644 index 0000000000..33fd2ef2d0 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb @@ -0,0 +1,160 @@ +name = 'Python' +version = '2.7.8' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.8.2' +scipyversion = '0.14.0' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +dependencies = [ + ('bzip2', '1.0.6'), # for bz2 package +# ('zlib', '1.2.8'), # use version selected by libxslt below + ('libreadline', '6.2'), + ('ncurses', '5.9'), + ('LLVM', '3.2'), # for Numba + ('SQLite', '3.8.4.3'), # for IPython and general use + ('libxslt', '1.1.28'), # for lxml. brings in libxml2 and zlib dependencies. + ('CUDA', '6.0.37','', True), # for pycuda, duh. +# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + + ('libjpeg-turbo','1.3.0'), # For matplotlib and Pillow + ('libpng','1.6.10'), # For matplotlib and Pillow + ('freetype', '2.5.3'), # For matplotlib and Pillow + +] + +# order is important! +exts_list = [ + ('setuptools', '5.7', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('ipython', '2.2.0', { + 'modulename': 'IPython', + 'source_urls': ['http://pypi.python.org/packages/source/i/ipython/'], + }), + ('pip', '1.5.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('virtualenv', '1.11.6', { + 'source_urls': ['http://pypi.python.org/packages/source/v/virtualenv/'], + }), + ('nose', '1.3.3', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('line_profiler', '1.0b3', { + 'source_urls': ['http://pypi.python.org/packages/source/l/line_profiler/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-%s_distutils_multiple-lib-dirs.patch' % ('1.8.1' if numpyversion.startswith('1.8') else numpyversion), + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('Cython', '0.20.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + + + ('networkx', '1.9', { + 'source_urls': ['https://pypi.python.org/packages/source/n/networkx/'], + 'modulename': 'Bio', + }), + ('biopython', '1.64', { + 'source_urls': ['https://pypi.python.org/packages/source/b/biopython/'], + 'modulename': 'Bio', + }), + + ('Pillow', '2.5.3', { + 'source_tmpl': SOURCE_ZIP, #'%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/P/Pillow/'], + 'modulename': 'PIL', + }), + ('matplotlib', '1.3.1', { + 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib/'], + }), + ('skimage', '0.10.1', { + 'source_tmpl': 'scikit-image-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/s/scikit-image/'], + }), + + ('lxml', '3.3.5', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lxml/'], + }), + ('pycuda', '2014.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pycuda/'], + }), + #('pyopencl', '2014.1', { + # 'source_urls': ['https://pypi.python.org/packages/source/p/puopencl/'], + #}), + ('pysam', '0.8.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pysam/'], + }), + ('pytz', '2014.4', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pytz/'], + }), + + ('mpi4py', '1.3.1', { + 'source_urls': ['https://mpi4py.googlecode.com/files/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.9.1', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('dateutil', '2.2', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['http://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('paramiko', '1.14.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('llvmpy', '0.12.7', { +# 'source_urls': ['https://pypi.python.org/packages/source/l/llvmpy/'], + 'source_urls': ['https://github.com/llvmpy/llvmpy/archive/'], # since pypi tarball is incomplete + 'source_tmpl': '%(version)s.zip', + }), + ('numba', '0.13.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/numba/'], + }), + ('numexpr', '2.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/numexpr/'], + }), + ('Bottleneck', '0.8.0', { + 'source_urls': ['https://pypi.python.org/packages/source/B/Bottleneck/'], + }), + ('pandas', '0.14.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandas/'], + }), + +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +moduleclass = 'lang' -- GitLab From dccb1001bed919679ef8df274e2bf14d76601745 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 5 Feb 2015 07:50:23 +0100 Subject: [PATCH 0555/1217] add unit test to check that all extra_options keys are defined in EasyConfig instance --- test/easyconfigs/easyconfigs.py | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index d339976033..0dac782165 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -266,6 +266,10 @@ def template_easyconfig_test(self, spec): msg = "Patch file %s is available for %s" % (ext_patch_full, specfn) self.assertTrue(os.path.isfile(ext_patch_full), msg) + # check whether all extra_options defined for used easyblock are defined + for key in app.extra_options(): + self.assertTrue(key in app.cfg) + app.close_log() os.remove(app.logfile) -- GitLab From 5d031e47103d8c6b5324cbddbe4191bb67771a25 Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 5 Feb 2015 09:49:39 +0100 Subject: [PATCH 0556/1217] Fixed style issue as per request --- easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb | 11 +++++------ 1 file changed, 5 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb b/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb index cb7b6916f1..48bda49ebe 100644 --- a/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/git/git-2.2.2-GCC-4.9.2.eb @@ -22,12 +22,15 @@ to handle everything from small to very large projects with speed and efficiency toolchain = {'name': 'GCC', 'version': '4.9.2'} -# eg. http://git-core.googlecode.com/files/git-1.8.2.tar.gz -sources = ['v%s.tar.gz' % version] +sources = ['v%(version)s.tar.gz'] source_urls = ['https://github.com/git/git/archive'] preconfigopts = 'make configure && ' +# Work around git build system bug. If LIBS contains -lpthread, then configure +# will not append -lpthread to LDFLAGS, but Makefile ignores LIBS. +configopts = "--enable-pthreads='-lpthread'" + dependencies = [ ('cURL', '7.40.0'), ('expat', '2.1.0'), @@ -39,8 +42,4 @@ sanity_check_paths = { 'dirs': [], } -# Work around git build system bug. If LIBS contains -lpthread, then configure -# will not append -lpthread to LDFLAGS, but Makefile ignores LIBS. -configopts = "--enable-pthreads='-lpthread'" - moduleclass = 'tools' -- GitLab From b302372f3548f83ff7fb8ca7dc5707ffef6b773e Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 5 Feb 2015 09:51:34 +0100 Subject: [PATCH 0557/1217] Rename Mercurial easyconfig to match toolchain used --- ...Python-2.7.9.eb => Mercurial-3.2.4-foss-2015a-Python-2.7.9.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/m/Mercurial/{Mercurial-3.2.4-foss-2014a-Python-2.7.9.eb => Mercurial-3.2.4-foss-2015a-Python-2.7.9.eb} (100%) diff --git a/easybuild/easyconfigs/m/Mercurial/Mercurial-3.2.4-foss-2014a-Python-2.7.9.eb b/easybuild/easyconfigs/m/Mercurial/Mercurial-3.2.4-foss-2015a-Python-2.7.9.eb similarity index 100% rename from easybuild/easyconfigs/m/Mercurial/Mercurial-3.2.4-foss-2014a-Python-2.7.9.eb rename to easybuild/easyconfigs/m/Mercurial/Mercurial-3.2.4-foss-2015a-Python-2.7.9.eb -- GitLab From b1dd33f0ebe8e1c06b33d271111d42ab726b8b63 Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 5 Feb 2015 11:49:05 +0100 Subject: [PATCH 0558/1217] Removed outdated source_urls directive --- easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb index 35bf28ab3b..d2e3142b03 100644 --- a/easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb @@ -10,7 +10,6 @@ description = """The libevent API provides a mechanism to execute a callback fun toolchain = {'name': 'GCC', 'version': '4.9.2'} -source_urls = ['https://github.com/downloads/libevent/libevent/'] sources = ['%(name)s-%(version)s-stable.tar.gz'] source_urls = ['https://sourceforge.net/projects/levent/files/%(name)s/%(name)s-2.0/'] -- GitLab From 1abded66e1078846a4d5ed71b04337bc2ecc287a Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 5 Feb 2015 11:50:32 +0100 Subject: [PATCH 0559/1217] Fixed style issue as per request --- easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb index d2e3142b03..78c88db863 100644 --- a/easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb @@ -11,6 +11,6 @@ description = """The libevent API provides a mechanism to execute a callback fun toolchain = {'name': 'GCC', 'version': '4.9.2'} sources = ['%(name)s-%(version)s-stable.tar.gz'] -source_urls = ['https://sourceforge.net/projects/levent/files/%(name)s/%(name)s-2.0/'] +source_urls = ['https://sourceforge.net/projects/levent/files/%(name)s/%(name)s-%version_major_minor)s/'] moduleclass = 'lib' -- GitLab From 1a367fd3ebbd22bfb9bbd84f7b4a6129845e2870 Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 5 Feb 2015 11:53:22 +0100 Subject: [PATCH 0560/1217] Fixed style issue as per request --- easybuild/easyconfigs/m/mawk/mawk-1.3.4-20141206-GCC-4.9.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/m/mawk/mawk-1.3.4-20141206-GCC-4.9.2.eb b/easybuild/easyconfigs/m/mawk/mawk-1.3.4-20141206-GCC-4.9.2.eb index 1c23e63925..dd90e4fccd 100644 --- a/easybuild/easyconfigs/m/mawk/mawk-1.3.4-20141206-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/m/mawk/mawk-1.3.4-20141206-GCC-4.9.2.eb @@ -13,7 +13,7 @@ source_urls = ['ftp://invisible-island.net/mawk'] sanity_check_paths = { 'files': ['bin/mawk'], - 'dirs': ["bin"] + 'dirs': [] } moduleclass = 'tools' -- GitLab From 3ac301ee23d3a4a44324b4c92bb1dce0bdd6a4f6 Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 5 Feb 2015 12:02:00 +0100 Subject: [PATCH 0561/1217] Added GCC easyconfig for libtool --- .../l/libtool/libtool-2.4.5-GCC-4.9.2.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb new file mode 100644 index 0000000000..fad1572815 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.5' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://ftp.gnu.org/gnu/%s' % name.lower()] + +moduleclass = 'lib' -- GitLab From bf8d0bcd830f7f190072c4cb2f1827d911663ffa Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 5 Feb 2015 12:02:57 +0100 Subject: [PATCH 0562/1217] Fixed build depedencies --- easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb b/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb index c3b1a15562..b567b31978 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb @@ -28,6 +28,11 @@ dependencies = [ ('S-Lang', '2.3.0'), ] +builddependencies = [ + ('Automake', '2.15'), + ('libtool', '2.4.5'), +] + preconfigopts = './autogen.sh && ' sanity_check_paths = { -- GitLab From 6096794da6b922dc52f78f25714a08dbd689cd46 Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 5 Feb 2015 12:10:28 +0100 Subject: [PATCH 0563/1217] Fixed style issues as per request --- easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb b/easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb index ba34aab87a..99ee62947e 100644 --- a/easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb @@ -10,9 +10,8 @@ between several programs in one terminal, detach them (they keep running in the toolchain = {'name': 'GCC', 'version': '4.9.2'} toolchainopts = {'optarch': True} -#http://sourceforge.net/projects/tmux/files/tmux/tmux-1.9/tmux-1.9a.tar.gz/download sources = [SOURCE_TAR_GZ] -source_urls = ['http://downloads.sourceforge.net/%(name)s/'] +source_urls = [SOURCEFORGE_SOURCE] dependencies = [ ('libevent', '2.0.22'), @@ -20,7 +19,7 @@ dependencies = [ sanity_check_paths = { 'files': ['bin/tmux'], - 'dirs': ['bin'] + 'dirs': [] } moduleclass = 'tools' -- GitLab From 556ebe6c4d6223948d6406e2fa637d4e45eb440d Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 5 Feb 2015 12:12:54 +0100 Subject: [PATCH 0564/1217] Renamed easyconfig to be consistent with version --- .../{S-Lang-2030-GCC-4.9.2.eb => S-Lang-2.3.0-GCC-4.9.2.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/s/S-Lang/{S-Lang-2030-GCC-4.9.2.eb => S-Lang-2.3.0-GCC-4.9.2.eb} (100%) diff --git a/easybuild/easyconfigs/s/S-Lang/S-Lang-2030-GCC-4.9.2.eb b/easybuild/easyconfigs/s/S-Lang/S-Lang-2.3.0-GCC-4.9.2.eb similarity index 100% rename from easybuild/easyconfigs/s/S-Lang/S-Lang-2030-GCC-4.9.2.eb rename to easybuild/easyconfigs/s/S-Lang/S-Lang-2.3.0-GCC-4.9.2.eb -- GitLab From 60577ab80bcdc8d98897b1eccda47f53b50d65f5 Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 5 Feb 2015 12:16:14 +0100 Subject: [PATCH 0565/1217] Added GCC easyconfig for gettext --- .../g/gettext/gettext-0.19.4-GCC-4.9.2.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/g/gettext/gettext-0.19.4-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.4-GCC-4.9.2.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.4-GCC-4.9.2.eb new file mode 100644 index 0000000000..7e8ff4e184 --- /dev/null +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.4-GCC-4.9.2.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'gettext' +version = '0.19.4' + +homepage = 'http://www.gnu.org/software/gettext/' +description = """GNU `gettext' is an important step for the GNU Translation Project, as it is an asset on which we may +build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools +and documentation""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = '--without-emacs' + +moduleclass = 'vis' -- GitLab From 34ba372ece6302b36e3bb14d7b5cab6f62967960 Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 5 Feb 2015 13:16:58 +0100 Subject: [PATCH 0566/1217] Added foss easyconfig for libxml2 --- .../l/libxml2/libxml2-2.9.2-foss-2015a.eb | 23 +++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015a.eb diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015a.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015a.eb new file mode 100644 index 0000000000..12454bc9c4 --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'libxml2' +version = '2.9.2' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and +toolchain developed for the Gnome project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' + +dependencies = [('zlib', '1.2.8')] + +moduleclass = 'lib' -- GitLab From af962ef8479aadd4e982ed7eea01652e72918681 Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 5 Feb 2015 13:18:07 +0100 Subject: [PATCH 0567/1217] Fixed style issue as per request --- .../easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb index 458d80e62e..9437987e64 100644 --- a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb +++ b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb @@ -13,7 +13,6 @@ source_urls = [ 'http://apache.belnet.be/xerces/c/3/sources/' ] - dependencies = [ ('cURL', '7.40.0'), ] -- GitLab From f471fabf6b1869e37bac44f3dce08ceff7db23d2 Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 5 Feb 2015 13:18:39 +0100 Subject: [PATCH 0568/1217] Fixed style issue as per request --- .../easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-foss-2015a.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-foss-2015a.eb b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-foss-2015a.eb index d8a60cefb4..443076c83e 100644 --- a/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-foss-2015a.eb +++ b/easybuild/easyconfigs/x/Xerces-C++/Xerces-C++-3.1.1-foss-2015a.eb @@ -13,7 +13,6 @@ source_urls = [ 'http://apache.belnet.be/xerces/c/3/sources/' ] - dependencies = [ ('cURL', '7.40.0'), ] -- GitLab From 0a8d3f7afe0e24d80f7024cdda4e52d8f527764c Mon Sep 17 00:00:00 2001 From: gjbex Date: Thu, 5 Feb 2015 13:46:55 +0100 Subject: [PATCH 0569/1217] Fixed build dependency on non-existing Automake version :) --- easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb b/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb index b567b31978..893cc852b8 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb @@ -29,7 +29,7 @@ dependencies = [ ] builddependencies = [ - ('Automake', '2.15'), + ('Automake', '1.15'), ('libtool', '2.4.5'), ] -- GitLab From fe51176decea7fbd38557d4793c681419da7f132 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lum=C3=ADr=20Jasiok?= Date: Thu, 5 Feb 2015 14:57:05 +0100 Subject: [PATCH 0570/1217] Added gompi toolchain 1.5.16 (GCC 4.8.3, OpenMPI 1.6.5) --- .../b/bzip2/bzip2-1.0.6-gompi-1.5.16.eb | 16 ++++++++ easybuild/easyconfigs/g/gompi/gompi-1.5.16.eb | 25 +++++++++++ .../h/hwloc/hwloc-1.8.1-GCC-4.8.3.eb | 19 +++++++++ .../libreadline-6.2-gompi-1.5.16.eb | 28 +++++++++++++ .../n/ncurses/ncurses-5.9-gompi-1.5.16.eb | 16 ++++++++ .../o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb | 41 +++++++++++++++++++ .../p/Python/Python-2.7.9-gompi-1.5.16.eb | 24 +++++++++++ .../z/zlib/zlib-1.2.8-gompi-1.5.16.eb | 24 +++++++++++ 8 files changed, 193 insertions(+) create mode 100644 easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-gompi-1.5.16.eb create mode 100644 easybuild/easyconfigs/g/gompi/gompi-1.5.16.eb create mode 100644 easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.3.eb create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.5.16.eb create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-5.9-gompi-1.5.16.eb create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-gompi-1.5.16.eb diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-gompi-1.5.16.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-gompi-1.5.16.eb new file mode 100644 index 0000000000..8546b30e25 --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-gompi-1.5.16.eb @@ -0,0 +1,16 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically +compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical +compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'gompi', 'version': '1.5.16'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s/'] + +moduleclass = 'tools' + diff --git a/easybuild/easyconfigs/g/gompi/gompi-1.5.16.eb b/easybuild/easyconfigs/g/gompi/gompi-1.5.16.eb new file mode 100644 index 0000000000..9bc8981a24 --- /dev/null +++ b/easybuild/easyconfigs/g/gompi/gompi-1.5.16.eb @@ -0,0 +1,25 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = '1.5.16' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compname = 'GCC' +compver = '4.8.3' +comp = (compname, compver) + +mpilib = 'OpenMPI' +mpiver = '1.6.5' + +# compiler toolchain dependencies +dependencies = [ + comp, + (mpilib, mpiver, '', comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.3.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.3.eb new file mode 100644 index 0000000000..dd1343eaa7 --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.3.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = "1.8.1" + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'GCC', 'version': '4.8.3'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.5.16.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.5.16.eb new file mode 100644 index 0000000000..91974bd874 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.5.16.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.2' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'gompi', 'version': '1.5.16'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' + diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-gompi-1.5.16.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-gompi-1.5.16.eb new file mode 100644 index 0000000000..c1d5e51e55 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-gompi-1.5.16.eb @@ -0,0 +1,16 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, +and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and +function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'gompi', 'version': '1.5.16'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb new file mode 100644 index 0000000000..1d1348fcbb --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.6.5' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '4.8.3'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +patches = ['OpenMPI-1.6.5-vt_cupti_events.patch'] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading +configopts += '--with-hwloc=$EBROOTHWLOC ' + +dependencies = [('hwloc', '1.8.1')] + +# needed for --with-openib +if OS_NAME in ['debian', 'ubuntu']: + osdependencies = ['libibverbs-dev'] +else: + # OK for OS_NAME == redhat, fedora, RHEL, SL, centos + osdependencies = ['libibverbs-devel'] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_f77", "mpi_f90", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-common", "mpif-config", "mpif", + "mpif-mpi-io", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16.eb new file mode 100644 index 0000000000..51bc309e32 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16.eb @@ -0,0 +1,24 @@ +name = 'Python' +version = '2.7.9' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'gompi', 'version': '1.5.16'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.2'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +moduleclass = 'lang' + diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gompi-1.5.16.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gompi-1.5.16.eb new file mode 100644 index 0000000000..82920e5897 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gompi-1.5.16.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'gompi', 'version': '1.5.16'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From fa42638bff3578bf089bee3917d5fd5d4709ad1b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lum=C3=ADr=20Jasiok?= Date: Thu, 5 Feb 2015 15:28:55 +0100 Subject: [PATCH 0571/1217] libreadline changed to 6.3, empty lines removed --- easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-gompi-1.5.16.eb | 1 - ...6.2-gompi-1.5.16.eb => libreadline-6.3-gompi-1.5.16.eb} | 3 +-- .../easyconfigs/n/ncurses/ncurses-5.9-gompi-1.5.16.eb | 1 - easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb | 7 +------ .../easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16.eb | 3 +-- 5 files changed, 3 insertions(+), 12 deletions(-) rename easybuild/easyconfigs/l/libreadline/{libreadline-6.2-gompi-1.5.16.eb => libreadline-6.3-gompi-1.5.16.eb} (98%) diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-gompi-1.5.16.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-gompi-1.5.16.eb index 8546b30e25..db84860379 100644 --- a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-gompi-1.5.16.eb +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-gompi-1.5.16.eb @@ -13,4 +13,3 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://www.bzip.org/%(version)s/'] moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.5.16.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-gompi-1.5.16.eb similarity index 98% rename from easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.5.16.eb rename to easybuild/easyconfigs/l/libreadline/libreadline-6.3-gompi-1.5.16.eb index 91974bd874..f0ee343099 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.5.16.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-gompi-1.5.16.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'libreadline' -version = '6.2' +version = '6.3' homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' description = """The GNU Readline library provides a set of functions for use by applications that @@ -25,4 +25,3 @@ sanity_check_paths = { } moduleclass = 'lib' - diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-gompi-1.5.16.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-gompi-1.5.16.eb index c1d5e51e55..9f6619baca 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-gompi-1.5.16.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-gompi-1.5.16.eb @@ -13,4 +13,3 @@ source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] moduleclass = 'devel' - diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb index 1d1348fcbb..fe19ab4c9f 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb @@ -20,12 +20,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' dependencies = [('hwloc', '1.8.1')] -# needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +osdependencies = [('libibverbs-dev','libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16.eb index 51bc309e32..4bcf8efac0 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16.eb @@ -13,7 +13,7 @@ sources = [SOURCE_TGZ] dependencies = [ ('bzip2', '1.0.6'), ('zlib', '1.2.8'), - ('libreadline', '6.2'), + ('libreadline', '6.3'), ('ncurses', '5.9'), # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] @@ -21,4 +21,3 @@ dependencies = [ osdependencies = [('openssl-devel', 'libssl-dev')] moduleclass = 'lang' - -- GitLab From 82423ebdf88a9f6546d2a6373228377daf9593e1 Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Thu, 5 Feb 2015 09:37:17 -0500 Subject: [PATCH 0572/1217] more extensions removed for tk/tcl deps --- easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb | 7 ------- 1 file changed, 7 deletions(-) diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb index 62367a74a4..e60a4bb6fd 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb @@ -277,7 +277,6 @@ exts_list = [ ('nor1mix', '1.2-0', ext_options), ('np', '0.60-2', ext_options), ('polynom', '1.3-8', ext_options), - ('picante', '1.6-2', ext_options), ('quantreg', '5.05', ext_options), ('RcppEigen', '0.3.2.3.0', ext_options), ('polspline', '1.1.9', ext_options), @@ -287,10 +286,8 @@ exts_list = [ ('RWekajars', '3.7.11-1', ext_options), ('RWeka', '0.4-23', ext_options), ('slam', '0.1-32', ext_options), - ('spacodiR', '0.13.0115', ext_options), ('tm', '0.6', ext_options), ('TraMineR', '1.8-8', ext_options), - ('untb', '1.7-2', ext_options), ('chemometrics', '1.3.8', ext_options), ('FNN', '1.1', ext_options), ('ipred', '0.9-3', ext_options), @@ -357,11 +354,7 @@ exts_list = [ ('multtest', '2.22.0', bioconductor_options), ('siggenes', '1.40.0', bioconductor_options), ('nleqslv', '2.5', ext_options), - ('widgetTools', '1.44.0', bioconductor_options), ('DynDoc', '1.44.0', bioconductor_options), - ('tkWidgets', '1.44.0', bioconductor_options), - ('Mfuzz', '2.26.0', bioconductor_options), - ('maSigPro', '1.38.0', bioconductor_options), ('genoset', '1.20.0', bioconductor_options), ('RGCCA', '2.0', ext_options), ('pheatmap', '0.7.7', ext_options), -- GitLab From e7a5c6fc2fc877687276fdb337376445403fca4e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 5 Feb 2015 19:19:43 +0100 Subject: [PATCH 0573/1217] remove R pkgs with external deps + any pkgs that depend on them, minor version bump in 2 Bioconductor pkgs --- .../easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb | 18 ++---------------- .../easyconfigs/r/R/R-3.1.2-intel-2015a.eb | 18 ++---------------- 2 files changed, 4 insertions(+), 32 deletions(-) diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb b/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb index f244aa3da4..a73e438a8c 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb @@ -220,7 +220,7 @@ exts_list = [ ('Biostrings', '2.34.1', bioconductor_options), ('GenomicRanges', '1.18.4', bioconductor_options), ('Rsamtools', '1.18.2', bioconductor_options), - ('BiocParallel', '1.0.0', bioconductor_options), + ('BiocParallel', '1.0.2', bioconductor_options), ('GenomicAlignments', '1.2.1', bioconductor_options), ('ShortRead', '1.24.0', bioconductor_options), ('graph', '1.44.1', bioconductor_options), @@ -269,7 +269,6 @@ exts_list = [ ('fossil', '0.3.7', ext_options), ('geiger', '2.0.3', ext_options), ('glmnet', '1.9-8', ext_options), - ('gmp', '0.5-12', ext_options), ('labdsv', '1.6-1', ext_options), ('MatrixModels', '0.3-1.1', ext_options), ('stabs', '0.5-0', ext_options), @@ -278,12 +277,6 @@ exts_list = [ ('nor1mix', '1.2-0', ext_options), ('np', '0.60-2', ext_options), ('polynom', '1.3-8', ext_options), - ('partitions', '1.9-15', ext_options), - ('rgl', '0.95.1201', ext_options), - ('phangorn', '1.99-11', ext_options), - ('phytools', '0.4-31', ext_options), - ('vegan', '2.2-0', ext_options), - ('picante', '1.6-2', ext_options), ('quantreg', '5.05', ext_options), ('RcppEigen', '0.3.2.3.0', ext_options), ('polspline', '1.1.9', ext_options), @@ -293,10 +286,8 @@ exts_list = [ ('RWekajars', '3.7.11-1', ext_options), ('RWeka', '0.4-23', ext_options), ('slam', '0.1-32', ext_options), - ('spacodiR', '0.13.0115', ext_options), ('tm', '0.6', ext_options), ('TraMineR', '1.8-8', ext_options), - ('untb', '1.7-2', ext_options), ('chemometrics', '1.3.8', ext_options), ('FNN', '1.1', ext_options), ('ipred', '0.9-3', ext_options), @@ -319,7 +310,7 @@ exts_list = [ ('limma', '3.22.4', bioconductor_options), ('RBGL', '1.42.0', bioconductor_options), ('org.Hs.eg.db', '3.0.0', bioconductor_options), - ('AnnotationForge', '1.8.1', bioconductor_options), + ('AnnotationForge', '1.8.2', bioconductor_options), ('KEGG.db', '3.0.0', bioconductor_options), ('annaffy', '1.38.0', bioconductor_options), ('gcrma', '2.38.0', bioconductor_options), @@ -363,15 +354,10 @@ exts_list = [ ('multtest', '2.22.0', bioconductor_options), ('siggenes', '1.40.0', bioconductor_options), ('nleqslv', '2.5', ext_options), - ('widgetTools', '1.44.0', bioconductor_options), ('DynDoc', '1.44.0', bioconductor_options), - ('tkWidgets', '1.44.0', bioconductor_options), - ('Mfuzz', '2.26.0', bioconductor_options), - ('maSigPro', '1.38.0', bioconductor_options), ('genoset', '1.20.0', bioconductor_options), ('RGCCA', '2.0', ext_options), ('pheatmap', '0.7.7', ext_options), - ('mixOmics', '5.0-3', ext_options), ('multtest', '2.22.0', bioconductor_options), ('NOISeq', '2.8.0', bioconductor_options), ('openxlsx', '2.2.1', ext_options), diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb index f9a3d072b1..99a39db56a 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb @@ -220,7 +220,7 @@ exts_list = [ ('Biostrings', '2.34.1', bioconductor_options), ('GenomicRanges', '1.18.4', bioconductor_options), ('Rsamtools', '1.18.2', bioconductor_options), - ('BiocParallel', '1.0.0', bioconductor_options), + ('BiocParallel', '1.0.2', bioconductor_options), ('GenomicAlignments', '1.2.1', bioconductor_options), ('ShortRead', '1.24.0', bioconductor_options), ('graph', '1.44.1', bioconductor_options), @@ -269,7 +269,6 @@ exts_list = [ ('fossil', '0.3.7', ext_options), ('geiger', '2.0.3', ext_options), ('glmnet', '1.9-8', ext_options), - ('gmp', '0.5-12', ext_options), ('labdsv', '1.6-1', ext_options), ('MatrixModels', '0.3-1.1', ext_options), ('stabs', '0.5-0', ext_options), @@ -278,12 +277,6 @@ exts_list = [ ('nor1mix', '1.2-0', ext_options), ('np', '0.60-2', ext_options), ('polynom', '1.3-8', ext_options), - ('partitions', '1.9-15', ext_options), - ('rgl', '0.95.1201', ext_options), - ('phangorn', '1.99-11', ext_options), - ('phytools', '0.4-31', ext_options), - ('vegan', '2.2-0', ext_options), - ('picante', '1.6-2', ext_options), ('quantreg', '5.05', ext_options), ('RcppEigen', '0.3.2.3.0', ext_options), ('polspline', '1.1.9', ext_options), @@ -293,10 +286,8 @@ exts_list = [ ('RWekajars', '3.7.11-1', ext_options), ('RWeka', '0.4-23', ext_options), ('slam', '0.1-32', ext_options), - ('spacodiR', '0.13.0115', ext_options), ('tm', '0.6', ext_options), ('TraMineR', '1.8-8', ext_options), - ('untb', '1.7-2', ext_options), ('chemometrics', '1.3.8', ext_options), ('FNN', '1.1', ext_options), ('ipred', '0.9-3', ext_options), @@ -319,7 +310,7 @@ exts_list = [ ('limma', '3.22.4', bioconductor_options), ('RBGL', '1.42.0', bioconductor_options), ('org.Hs.eg.db', '3.0.0', bioconductor_options), - ('AnnotationForge', '1.8.1', bioconductor_options), + ('AnnotationForge', '1.8.2', bioconductor_options), ('KEGG.db', '3.0.0', bioconductor_options), ('annaffy', '1.38.0', bioconductor_options), ('gcrma', '2.38.0', bioconductor_options), @@ -363,15 +354,10 @@ exts_list = [ ('multtest', '2.22.0', bioconductor_options), ('siggenes', '1.40.0', bioconductor_options), ('nleqslv', '2.5', ext_options), - ('widgetTools', '1.44.0', bioconductor_options), ('DynDoc', '1.44.0', bioconductor_options), - ('tkWidgets', '1.44.0', bioconductor_options), - ('Mfuzz', '2.26.0', bioconductor_options), - ('maSigPro', '1.38.0', bioconductor_options), ('genoset', '1.20.0', bioconductor_options), ('RGCCA', '2.0', ext_options), ('pheatmap', '0.7.7', ext_options), - ('mixOmics', '5.0-3', ext_options), ('multtest', '2.22.0', bioconductor_options), ('NOISeq', '2.8.0', bioconductor_options), ('openxlsx', '2.2.1', ext_options), -- GitLab From e5657e38f95e4db4916e822e6f17d3f99e7e0af0 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 5 Feb 2015 20:19:32 +0100 Subject: [PATCH 0574/1217] fix @boegel's remarks ;-) --- .../easyconfigs/b/bzip2/bzip2-1.0.6-GCC-4.8.2.eb | 15 +++++++++++++++ .../easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb | 3 ++- .../easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb | 6 +++--- .../f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb | 1 - .../easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb | 1 - .../easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb | 3 ++- .../easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb | 7 +++---- 7 files changed, 25 insertions(+), 11 deletions(-) create mode 100644 easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCC-4.8.2.eb diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCC-4.8.2.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCC-4.8.2.eb new file mode 100644 index 0000000000..5a7003c26f --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCC-4.8.2.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically +compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical +compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s/'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb index e0cb4f9a7d..d7c47ac9d1 100644 --- a/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb +++ b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb @@ -21,7 +21,6 @@ description = """DNA Sequence Reads Compression is an application designed for c toolchain = {'name': 'dummy', 'version': 'dummy'} -# fi. http://sun.aei.polsl.pl/dsrc/download/2.0rc/dsrc sources = ['%(namelower)s'] source_urls = ['http://sun.aei.polsl.pl/dsrc/download/%(version)s/'] checksums = [('md5', 'bdc40a96e33411cd4cdbe2b58ae285b7')] @@ -31,4 +30,6 @@ sanity_check_paths = { 'dirs': [] } +modextrapaths = {'PATH': ''} + moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb index b750d29bed..9187fc8e42 100644 --- a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb @@ -20,12 +20,12 @@ description = """fastqz is a compressor for FASTQ files. FASTQ is the output of toolchain = {'name': 'GCC', 'version': '4.8.2'} toolchainopts = {'opt': True, 'optarch': True} -dependencies = [('ZPAQ', '6.57')] - -# eg. http://mattmahoney.net/dc/fastqz/fastqz15.cpp & http://mattmahoney.net/dc/fastqz/fapack.cpp minver = ''.join(version.split('.')) sources = ['fastqz%s.cpp' % minver, 'fapack.cpp'] source_urls = [homepage] +checksums = ['0a55cd15605ddf32c31dac5af8c0f442', '490efab4389637da5566cf5173b1d274'] + +dependencies = [('ZPAQ', '6.57')] skipsteps = ['source'] diff --git a/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb index 867cc250e1..522141f705 100644 --- a/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb @@ -18,7 +18,6 @@ description = """Fqzcomp is a basic fastq compressor, designed primarily for hig toolchain = {'name': 'GCC', 'version': '4.8.2'} -# eg. http://sourceforge.net/projects/fqzcomp/files/fqzcomp-4.6.tar.gz/download sources = [SOURCE_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb index 01169de210..4b95315150 100644 --- a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb @@ -19,7 +19,6 @@ description = """Quip compresses next-generation sequencing data with extreme pr toolchain = {'name': 'GCC', 'version': '4.8.2'} -# eg. http://homes.cs.washington.edu/~dcjones/quip/quip-1.1.8.tar.gz sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] diff --git a/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb b/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb index 5724bab7ac..c8aea1ea00 100644 --- a/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb @@ -19,10 +19,11 @@ description = """SCALCE [skeɪlz] is a FASTQ compression tool that uses locally toolchain = {'name': 'GCC', 'version': '4.8.2'} -# eg. http://sourceforge.net/projects/scalce/files/2.7/scalce-v2.7-src.tar.gz/download sources = ['%(namelower)s-v%(version)s-src.tar.gz'] source_urls = [SOURCEFORGE_SOURCE] +dependencies = [('bzip2', '1.0.6')] + preconfigopts = 'cd zlib-1.2.8 &&' buildopts = '-C zlib-1.2.8 && make all' diff --git a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb index 3ab5b6fbdc..9dabf51cec 100644 --- a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb @@ -19,16 +19,15 @@ description = """Quip compresses next-generation sequencing data with extreme pr toolchain = {'name': 'GCC', 'version': '4.8.2'} -# eg. http://mattmahoney.net/dc/zpaq657.zip sources = ['%%(namelower)s%s.zip' % ''.join(version.split('.'))] source_urls = ['http://mattmahoney.net/dc/'] -buildopts = ' && pod2man zpaq.pod > zpaq.1' +buildopts = " && pod2man zpaq.pod > zpaq.1" -files_to_copy = [(["zpaq"], 'bin'), (["zpaq.1"], 'share/man'), (["libzpaq.h", "libzpaq.cpp"], 'include')] +files_to_copy = [(['zpaq'], 'bin'), (['zpaq.1'], 'share/man'), (['libzpaq.h', 'libzpaq.cpp'], 'include')] sanity_check_paths = { - 'files': ["bin/zpaq", "share/man/zpaq.1"], + 'files': ['bin/zpaq', 'share/man/zpaq.1', 'include/libzpaq.h', 'include/libzpqq.cpp'], 'dirs': [] } -- GitLab From 156b7ae1b6b73692b2744c576c2453104c015801 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Fri, 6 Feb 2015 07:42:11 +0100 Subject: [PATCH 0575/1217] fix dates in headers to 2015 Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb | 2 +- easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb | 2 +- easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb | 2 +- easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb | 2 +- easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb | 2 +- easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb index d7c47ac9d1..76c48d1e81 100644 --- a/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb +++ b/easybuild/easyconfigs/d/DSRC/DSRC-2.0rc-linux-64-bit.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2014 NTUA +# Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb index 9187fc8e42..60a43d46c6 100644 --- a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2014 NTUA +# Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb index 522141f705..0f7a6c3ea5 100644 --- a/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2014 NTUA +# Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb index 4b95315150..1cda3a4011 100644 --- a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2014 NTUA +# Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb b/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb index c8aea1ea00..f442020c76 100644 --- a/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2014 NTUA +# Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ diff --git a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb index 9dabf51cec..bee205b447 100644 --- a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb @@ -1,7 +1,7 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2014 NTUA +# Copyright:: Copyright 2012-2015 NTUA # Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ -- GitLab From 8c51f6bae5f9716151218889efbb178087507f70 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Fri, 6 Feb 2015 07:44:48 +0100 Subject: [PATCH 0576/1217] oops, fix description for ZPAQ Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb index bee205b447..5421483f0b 100644 --- a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb @@ -13,9 +13,8 @@ name = 'ZPAQ' version = '6.57' homepage = 'http://mattmahoney.net/dc/zpaq.html' -description = """Quip compresses next-generation sequencing data with extreme prejudice. - It supports input and output in the FASTQ and SAM/BAM formats, - compressing large datasets to as little as 15% of their original size.""" +description = """zpaq is a free and open source (GPL v3) incremental, + journaling command-line archiver for Windows, Linux and Mac OS/X""" toolchain = {'name': 'GCC', 'version': '4.8.2'} -- GitLab From f5627c4cb1e283e0c0c34648043df9a560e0cffc Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Fri, 6 Feb 2015 07:58:02 +0100 Subject: [PATCH 0577/1217] bump to ZPAQ/7.00 Signed-off-by: Fotis Georgatos --- .../z/ZPAQ/{ZPAQ-6.57-GCC-4.8.2.eb => ZPAQ-7.00-GCC-4.8.2.eb} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/z/ZPAQ/{ZPAQ-6.57-GCC-4.8.2.eb => ZPAQ-7.00-GCC-4.8.2.eb} (98%) diff --git a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb similarity index 98% rename from easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb rename to easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb index 5421483f0b..d3edfe36d4 100644 --- a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-6.57-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb @@ -10,7 +10,7 @@ easyblock = 'MakeCp' name = 'ZPAQ' -version = '6.57' +version = '7.00' homepage = 'http://mattmahoney.net/dc/zpaq.html' description = """zpaq is a free and open source (GPL v3) incremental, -- GitLab From 94a14df36419076164475dc6e06cb495211c6b68 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Fri, 6 Feb 2015 08:05:02 +0100 Subject: [PATCH 0578/1217] bump to ZPAQ/7.00, really, also deps Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb index 60a43d46c6..50633eb598 100644 --- a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb @@ -25,7 +25,7 @@ sources = ['fastqz%s.cpp' % minver, 'fapack.cpp'] source_urls = [homepage] checksums = ['0a55cd15605ddf32c31dac5af8c0f442', '490efab4389637da5566cf5173b1d274'] -dependencies = [('ZPAQ', '6.57')] +dependencies = [('ZPAQ', '7.00')] skipsteps = ['source'] -- GitLab From 02468aaca87a1e9c21ac414e0d73b57ac45e0220 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Fri, 6 Feb 2015 08:09:06 +0100 Subject: [PATCH 0579/1217] ZPAQ/7.00 and commit the sanity test bugfix Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb index d3edfe36d4..1950d4e58e 100644 --- a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb @@ -26,7 +26,7 @@ buildopts = " && pod2man zpaq.pod > zpaq.1" files_to_copy = [(['zpaq'], 'bin'), (['zpaq.1'], 'share/man'), (['libzpaq.h', 'libzpaq.cpp'], 'include')] sanity_check_paths = { - 'files': ['bin/zpaq', 'share/man/zpaq.1', 'include/libzpaq.h', 'include/libzpqq.cpp'], + 'files': ['bin/zpaq', 'share/man/zpaq.1', 'include/libzpaq.h', 'include/libzpaq.cpp'], 'dirs': [] } -- GitLab From 8b0b64a9389880fc112d6e3a7e87a1ee3c614920 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lum=C3=ADr=20Jasiok?= Date: Fri, 6 Feb 2015 10:10:00 +0100 Subject: [PATCH 0580/1217] mpilib, mpiver variables removed --- easybuild/easyconfigs/g/gompi/gompi-1.5.16.eb | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/g/gompi/gompi-1.5.16.eb b/easybuild/easyconfigs/g/gompi/gompi-1.5.16.eb index 9bc8981a24..b1db91bda9 100644 --- a/easybuild/easyconfigs/g/gompi/gompi-1.5.16.eb +++ b/easybuild/easyconfigs/g/gompi/gompi-1.5.16.eb @@ -13,13 +13,10 @@ compname = 'GCC' compver = '4.8.3' comp = (compname, compver) -mpilib = 'OpenMPI' -mpiver = '1.6.5' - # compiler toolchain dependencies dependencies = [ comp, - (mpilib, mpiver, '', comp), + ('OpenMPI', '1.6.5', '', comp), ] moduleclass = 'toolchain' -- GitLab From a596f6d48bb02ba2fb64c0ef95505abbc765c566 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 6 Feb 2015 10:11:19 +0100 Subject: [PATCH 0581/1217] Added autotools bundle --- .../a/Autotools/Autotools-1.0-GCC.4.9.2.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/a/Autotools/Autotools-1.0-GCC.4.9.2.eb diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-1.0-GCC.4.9.2.eb b/easybuild/easyconfigs/a/Autotools/Autotools-1.0-GCC.4.9.2.eb new file mode 100644 index 0000000000..2237d09fbc --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-1.0-GCC.4.9.2.eb @@ -0,0 +1,18 @@ +easyblock = 'Bundle' + +name = 'Autotools' +# this version number has no real meaning +version = '1.0' + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +dependencies = [ + ('Autoconf', '2.69'), + ('Automake', '1.15'), + ('libtool', '2.4.2'), +] + +moduleclass = 'devel' -- GitLab From 94b574f278e9a1ce3104459d9076ad5136f1a789 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 6 Feb 2015 10:21:22 +0100 Subject: [PATCH 0582/1217] Other versioning scheme --- ...-1.0-GCC.4.9.2.eb => Autotools-20150119-GCC.4.9.2.eb} | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) rename easybuild/easyconfigs/a/Autotools/{Autotools-1.0-GCC.4.9.2.eb => Autotools-20150119-GCC.4.9.2.eb} (61%) diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-1.0-GCC.4.9.2.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC.4.9.2.eb similarity index 61% rename from easybuild/easyconfigs/a/Autotools/Autotools-1.0-GCC.4.9.2.eb rename to easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC.4.9.2.eb index 2237d09fbc..067ccdbe63 100644 --- a/easybuild/easyconfigs/a/Autotools/Autotools-1.0-GCC.4.9.2.eb +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC.4.9.2.eb @@ -1,8 +1,7 @@ easyblock = 'Bundle' name = 'Autotools' -# this version number has no real meaning -version = '1.0' +version = '20150119' # date of the most recent change homepage = 'http://autotools.io' description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" @@ -10,9 +9,9 @@ description = """This bundle collect the standard GNU build tools: Autoconf, Aut toolchain = {'name': 'GCC', 'version': '4.9.2'} dependencies = [ - ('Autoconf', '2.69'), - ('Automake', '1.15'), - ('libtool', '2.4.2'), + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.5'), # 20150119 ] moduleclass = 'devel' -- GitLab From 4d6148914080f740794bb064e79ccbb1a135a4b6 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 6 Feb 2015 10:21:53 +0100 Subject: [PATCH 0583/1217] New version of libtool --- .../l/libtool/libtool-2.4.5-GCC-4.9.2.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb new file mode 100644 index 0000000000..01b30a3758 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.5' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +moduleclass = 'lib' -- GitLab From 311c2dc6936b292e1e4f6a80eed0c5b8f64c8c47 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lum=C3=ADr=20Jasiok?= Date: Fri, 6 Feb 2015 10:39:35 +0100 Subject: [PATCH 0584/1217] zlib preconfigopts removed --- easybuild/easyconfigs/z/zlib/zlib-1.2.8-gompi-1.5.16.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gompi-1.5.16.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gompi-1.5.16.eb index 82920e5897..2c0a2d22d0 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gompi-1.5.16.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gompi-1.5.16.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], -- GitLab From ed1266e7cc935596ec360dbb25cc22d13bc77190 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lum=C3=ADr=20Jasiok?= Date: Fri, 6 Feb 2015 11:24:18 +0100 Subject: [PATCH 0585/1217] -bare suffix for Python package --- ...n-2.7.9-gompi-1.5.16.eb => Python-2.7.9-gompi-1.5.16-bare.eb} | 1 + 1 file changed, 1 insertion(+) rename easybuild/easyconfigs/p/Python/{Python-2.7.9-gompi-1.5.16.eb => Python-2.7.9-gompi-1.5.16-bare.eb} (96%) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb similarity index 96% rename from easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16.eb rename to easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb index 4bcf8efac0..583d5df7db 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb @@ -1,5 +1,6 @@ name = 'Python' version = '2.7.9' +versionsuffix = '-bare' homepage = 'http://python.org/' description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." -- GitLab From 0b0a5f0ab03f98dda4f8df26497e120da39fa2af Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 6 Feb 2015 22:47:55 +0100 Subject: [PATCH 0586/1217] add Perl as build dep for ZPAQ --- .../p/Perl/Perl-5.20.1-GCC-4.8.2-bare.eb | 17 +++++++++++++++++ .../easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb | 10 +++++++++- 2 files changed, 26 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/p/Perl/Perl-5.20.1-GCC-4.8.2-bare.eb diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.1-GCC-4.8.2-bare.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.1-GCC-4.8.2-bare.eb new file mode 100644 index 0000000000..df13383ba5 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.1-GCC-4.8.2-bare.eb @@ -0,0 +1,17 @@ +name = 'Perl' +version = '5.20.1' +versionsuffix = '-bare' + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +# bare, no extensions +exts_list = [] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb index 1950d4e58e..5325d19c74 100644 --- a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb @@ -21,9 +21,17 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} sources = ['%%(namelower)s%s.zip' % ''.join(version.split('.'))] source_urls = ['http://mattmahoney.net/dc/'] +builddependencies = [ + ('Perl', '5.20.1'), # required for pod2man +] + buildopts = " && pod2man zpaq.pod > zpaq.1" -files_to_copy = [(['zpaq'], 'bin'), (['zpaq.1'], 'share/man'), (['libzpaq.h', 'libzpaq.cpp'], 'include')] +files_to_copy = [ + (['zpaq'], 'bin'), + (['zpaq.1'], 'share/man'), + (['libzpaq.h', 'libzpaq.cpp'], 'include'), +] sanity_check_paths = { 'files': ['bin/zpaq', 'share/man/zpaq.1', 'include/libzpaq.h', 'include/libzpaq.cpp'], -- GitLab From 9ea1a7dedcdd0d2313fc7b50c5e61755605159cd Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 6 Feb 2015 22:53:06 +0100 Subject: [PATCH 0587/1217] add easyconfig for bundle of extra R extensions (PoC) --- .../R-extra/R-extra-3.1.2-1.0.0-foss-2015a.eb | 47 +++++++++++++++++++ 1 file changed, 47 insertions(+) create mode 100644 easybuild/easyconfigs/r/R-extra/R-extra-3.1.2-1.0.0-foss-2015a.eb diff --git a/easybuild/easyconfigs/r/R-extra/R-extra-3.1.2-1.0.0-foss-2015a.eb b/easybuild/easyconfigs/r/R-extra/R-extra-3.1.2-1.0.0-foss-2015a.eb new file mode 100644 index 0000000000..e71e3abf1d --- /dev/null +++ b/easybuild/easyconfigs/r/R-extra/R-extra-3.1.2-1.0.0-foss-2015a.eb @@ -0,0 +1,47 @@ +easyblock = 'Bundle' + +name = 'R-extra' +rver = '3.1.2' +version = '%s-1.0.0' % rver + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +# these are extensions for R +exts_defaultclass = 'RPackage' +exts_filter = ("R -q --no-save", "library(%(ext_name)s)") + +dependencies = [ + ('R', rver), + ('GMP', '6.0.0a'), # for gmp +] + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.r-project.org/src/contrib/', # current version of packages + 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': name_tmpl, +} +# Bioconductor packages have a different download url +bioconductor_options = { + 'source_urls': [ + 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', + ], + 'source_tmpl': name_tmpl, +} + +# !! order of packages is important !! +exts_list = [ + ('gmp', '0.5-12', ext_options), +] + +modextrapaths = {'R_LIBS': ''} + +moduleclass = 'lang' -- GitLab From 5715d08b9de87430863146c910dd274f4d35adf8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 7 Feb 2015 10:05:02 +0100 Subject: [PATCH 0588/1217] include missing '-bare' versionsuffix for Perl builddep in ZPAQ easyconfig --- easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb index 5325d19c74..6b82f0fc24 100644 --- a/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/z/ZPAQ/ZPAQ-7.00-GCC-4.8.2.eb @@ -22,7 +22,7 @@ sources = ['%%(namelower)s%s.zip' % ''.join(version.split('.'))] source_urls = ['http://mattmahoney.net/dc/'] builddependencies = [ - ('Perl', '5.20.1'), # required for pod2man + ('Perl', '5.20.1', '-bare'), # required for pod2man ] buildopts = " && pod2man zpaq.pod > zpaq.1" -- GitLab From 246386041f3e89739e1782e60bdde94c1d5f0f7a Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Sat, 7 Feb 2015 11:59:19 +0100 Subject: [PATCH 0589/1217] Renamed to correct filename --- ...ools-20150119-GCC.4.9.2.eb => Autotools-20150119-GCC-4.9.2.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/a/Autotools/{Autotools-20150119-GCC.4.9.2.eb => Autotools-20150119-GCC-4.9.2.eb} (100%) diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC.4.9.2.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb similarity index 100% rename from easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC.4.9.2.eb rename to easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb -- GitLab From 3d47126bab32a946dd92356b00e0a0824024e492 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Sat, 7 Feb 2015 12:01:20 +0100 Subject: [PATCH 0590/1217] Add dependency for M4 to libtool --- easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb index 01b30a3758..a0c6a258a8 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb @@ -12,4 +12,6 @@ toolchain = {'name': 'GCC', 'version': '4.9.2'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +dependencies = [('M4', '1.4.17')] + moduleclass = 'lib' -- GitLab From d0f788fd1617744ca9bd7d3cee8fd6bf5553799e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 7 Feb 2015 12:06:17 +0100 Subject: [PATCH 0591/1217] include extra Python packages for Python 2.7.9 easyconfigs --- easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb | 6 ++++++ 3 files changed, 18 insertions(+) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb index 8ca80a6e43..ddcd75ee83 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb @@ -91,6 +91,12 @@ exts_list = [ ('pyparsing', '2.0.3', { 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.13', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb index 2bf2418080..295a215baa 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb @@ -91,6 +91,12 @@ exts_list = [ ('pyparsing', '2.0.3', { 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.13', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb index 632c8fb490..f686a45b8c 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb @@ -94,6 +94,12 @@ exts_list = [ ('pyparsing', '2.0.3', { 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.13', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), ] moduleclass = 'lang' -- GitLab From 3683989d5d5c85caaca522027d2ce4406abdabf5 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Sat, 7 Feb 2015 14:23:22 +0100 Subject: [PATCH 0592/1217] Added ISL-0.14 --- .../easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb | 21 +++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 easybuild/easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb b/easybuild/easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb new file mode 100644 index 0000000000..7b675a2960 --- /dev/null +++ b/easybuild/easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'ISL' +version = '0.14' + +homepage = 'http://isl.gforge.inria.fr/' +description = """isl is a library for manipulating sets and relations of integer points bounded by linear constraints. """ + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = ['isl-0.14.tar.bz2'] +source_urls = ['http://isl.gforge.inria.fr/'] + +dependencies = [('GMP', '6.0.0')] + +sanity_check_paths = { + 'files': ['lib/libisl.so', 'lib/libisl.a'], + 'dirs': ['include/isl'] +} + +moduleclass = 'compiler' -- GitLab From 8b2c21a3ed6921833897e3d8b777e08d5b18f1b7 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Sat, 7 Feb 2015 14:24:26 +0100 Subject: [PATCH 0593/1217] GMP-6.0.0a for GCC 4.9.2 --- .../easyconfigs/g/GMP/GMP-6.0.0-GCC-4.9.2.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/g/GMP/GMP-6.0.0-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.0.0-GCC-4.9.2.eb b/easybuild/easyconfigs/g/GMP/GMP-6.0.0-GCC-4.9.2.eb new file mode 100644 index 0000000000..08df157950 --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-6.0.0-GCC-4.9.2.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '6.0.0' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = ["%(namelower)s-%(version)sa.tar.bz2"] +source_urls = [GNU_SOURCE] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.so', 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' -- GitLab From c2c6c8457fef0862eb3f9ade69a4217bc127834c Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Sat, 7 Feb 2015 14:25:19 +0100 Subject: [PATCH 0594/1217] WIP for Clang 3.6 --- .../c/Clang/Clang-3.6.0rc2-GCC-4.9.2.eb | 71 +++++++++++++++++++ 1 file changed, 71 insertions(+) create mode 100644 easybuild/easyconfigs/c/Clang/Clang-3.6.0rc2-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.0rc2-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.0rc2-GCC-4.9.2.eb new file mode 100644 index 0000000000..815d5b9a57 --- /dev/null +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.0rc2-GCC-4.9.2.eb @@ -0,0 +1,71 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2013 Dmitri Gribenko, Ward Poelmans +# Authors:: Dmitri Gribenko +# Authors:: Ward Poelmans +# License:: GPLv2 or later, MIT, three-clause BSD. +# $Id$ +## + +name = "Clang" +version = "3.6.0" + +homepage = "http://clang.llvm.org/" +description = """C, C++, Objective-C compiler, based on LLVM. Does not + include C++ standard library -- use libstdc++ from GCC.""" + +# Clang also depends on libstdc++ during runtime, but this dependency is +# already specified as the toolchain. +toolchain = {'name': 'GCC', 'version': '4.9.2'} +# Do not set optarch to True: it will cause the build to fail +toolchainopts = {'optarch': False} + +#source_urls = ["http://llvm.org/releases/%(version)s"] +source_urls = ["http://llvm.org/pre-releases/3.6.0/rc2/"] +sources = [ +# "llvm-%(version)src2.src.tar.xz", + "llvm-3.6.0.tar", + "cfe-%(version)src2.src.tar.xz", + "compiler-rt-%(version)src2.src.tar.xz", +# "polly-%(version)src2.src.tar.xz", + "polly-3.6.0.tar", +] + +patches = [ + # Remove some tests that fail because of -DGCC_INSTALL_PREFIX. The issue is + # that hardcoded GCC_INSTALL_PREFIX overrides -sysroot. This probably breaks + # cross-compilation. + # http://lists.cs.uiuc.edu/pipermail/cfe-commits/Week-of-Mon-20130401/077539.html +# 'Clang-%(version)s-failing-tests-due-to-gcc-installation-prefix.patch', +# 'Clang-%(version)s-failing-sanitizer-tests.patch', +# 'Clang-%(version)s-llvm-ar-uid.patch', +# 'lit.patch', +# ('poll-isl.patch', 'tools/polly/'), +] + +builddependencies = [('CMake', '3.1.0')] + +dependencies = [ + ('GMP', '6.0.0'), + ('ISL', '0.14') +] + +sanity_check_paths = { + 'files': ['bin/clang', 'bin/clang++', 'lib/libclang.so', 'lib/clang/%(version)s/include/stddef.h'], + 'dirs': [], +} + +moduleclass = 'compiler' + +assertions = True + +usepolly = True + +build_targets = ['X86'] + +runtest = False + +parallel = 1 + +bootstrap = False -- GitLab From b8af9c7794837e10a66030e674d3c6b907bcc279 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Sun, 8 Feb 2015 12:05:01 +0100 Subject: [PATCH 0595/1217] convert HPCBIOS toolchains to bundles Signed-off-by: Fotis Georgatos --- .../h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb | 2 +- .../h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb | 2 +- .../HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb | 2 +- .../HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb | 2 +- .../HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb | 2 +- .../h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb | 2 +- .../h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb | 2 +- .../h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb | 2 +- .../HPCBIOS_Profilers-20130829-goolf-1.4.10.eb | 2 +- 9 files changed, 9 insertions(+), 9 deletions(-) diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb index 1919d75c76..f816c5478e 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb @@ -10,7 +10,7 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## -easyblock = "Toolchain" +easyblock = "Bundle" name = 'HPCBIOS_Bioinfo' version = '20130829' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb index 07974e95af..928208b06e 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb @@ -10,7 +10,7 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## -easyblock = "Toolchain" +easyblock = "Bundle" name = 'HPCBIOS_Bioinfo' version = '20130829' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb index 5e0919b8d2..0b0682b5cc 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb @@ -10,7 +10,7 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-05.html ## -easyblock = "Toolchain" +easyblock = "Bundle" name = 'HPCBIOS_Debuggers' version = '20130829' diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb index 105b0630d6..5dc321bbb5 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb @@ -10,7 +10,7 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html ## -easyblock = "Toolchain" +easyblock = "Bundle" name = 'HPCBIOS_LifeSciences' version = '20130829' diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb index 20fb4bbb29..469d57c8d9 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb @@ -10,7 +10,7 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html ## -easyblock = "Toolchain" +easyblock = "Bundle" name = 'HPCBIOS_LifeSciences' version = '20130829' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb index 56ceb7f56d..f4b107240d 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb @@ -10,7 +10,7 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-01.html ## -easyblock = "Toolchain" +easyblock = "Bundle" name = 'HPCBIOS_Math' version = '20130829' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb index ca6cb154bb..5a7e87852a 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb @@ -10,7 +10,7 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-01.html ## -easyblock = "Toolchain" +easyblock = "Bundle" name = 'HPCBIOS_Math' version = '20130829' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb index c4fa0cbf6c..9eead1e8ea 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb @@ -10,7 +10,7 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-01.html ## -easyblock = "Toolchain" +easyblock = "Bundle" name = 'HPCBIOS_Math' version = '20130829' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb index 8febd4d488..ae3956c8ea 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb @@ -10,7 +10,7 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_07-02.html ## -easyblock = "Toolchain" +easyblock = "Bundle" name = 'HPCBIOS_Profilers' version = '20130829' -- GitLab From 2564eacdc7611747fe767c27b9de41c0a3e11484 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 9 Feb 2015 09:37:37 +0100 Subject: [PATCH 0596/1217] Updated Clang 3.6 ec --- .../c/Clang/Clang-3.6.0rc2-GCC-4.9.2.eb | 28 +++---------------- 1 file changed, 4 insertions(+), 24 deletions(-) diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.0rc2-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.0rc2-GCC-4.9.2.eb index 815d5b9a57..c46973a974 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.6.0rc2-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.0rc2-GCC-4.9.2.eb @@ -21,27 +21,12 @@ toolchain = {'name': 'GCC', 'version': '4.9.2'} # Do not set optarch to True: it will cause the build to fail toolchainopts = {'optarch': False} -#source_urls = ["http://llvm.org/releases/%(version)s"] -source_urls = ["http://llvm.org/pre-releases/3.6.0/rc2/"] +source_urls = ["http://llvm.org/releases/%(version)s"] sources = [ -# "llvm-%(version)src2.src.tar.xz", - "llvm-3.6.0.tar", + "llvm-%(version)src2.src.tar.xz", "cfe-%(version)src2.src.tar.xz", "compiler-rt-%(version)src2.src.tar.xz", -# "polly-%(version)src2.src.tar.xz", - "polly-3.6.0.tar", -] - -patches = [ - # Remove some tests that fail because of -DGCC_INSTALL_PREFIX. The issue is - # that hardcoded GCC_INSTALL_PREFIX overrides -sysroot. This probably breaks - # cross-compilation. - # http://lists.cs.uiuc.edu/pipermail/cfe-commits/Week-of-Mon-20130401/077539.html -# 'Clang-%(version)s-failing-tests-due-to-gcc-installation-prefix.patch', -# 'Clang-%(version)s-failing-sanitizer-tests.patch', -# 'Clang-%(version)s-llvm-ar-uid.patch', -# 'lit.patch', -# ('poll-isl.patch', 'tools/polly/'), + "polly-%(version)src2.src.tar.xz", ] builddependencies = [('CMake', '3.1.0')] @@ -56,16 +41,11 @@ sanity_check_paths = { 'dirs': [], } -moduleclass = 'compiler' - assertions = True usepolly = True build_targets = ['X86'] -runtest = False - -parallel = 1 +moduleclass = 'compiler' -bootstrap = False -- GitLab From a728c395f6fce48e0b18c899aaa61397224627de Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 9 Feb 2015 09:37:54 +0100 Subject: [PATCH 0597/1217] Renamed the Clang easyconfig --- .../{Clang-3.6.0rc2-GCC-4.9.2.eb => Clang-3.6.0-GCC-4.9.2.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/c/Clang/{Clang-3.6.0rc2-GCC-4.9.2.eb => Clang-3.6.0-GCC-4.9.2.eb} (100%) diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.0rc2-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb similarity index 100% rename from easybuild/easyconfigs/c/Clang/Clang-3.6.0rc2-GCC-4.9.2.eb rename to easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb -- GitLab From 955879553ec246fd909f27e639bc2debca6c911c Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 9 Feb 2015 09:40:10 +0100 Subject: [PATCH 0598/1217] Missed newline --- easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb index c46973a974..c22450fce4 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb @@ -48,4 +48,3 @@ usepolly = True build_targets = ['X86'] moduleclass = 'compiler' - -- GitLab From 64c97a0a4b3e7f506489953f1972a4cbf28f3a0f Mon Sep 17 00:00:00 2001 From: Markus Geimer Date: Mon, 9 Feb 2015 14:09:00 +0100 Subject: [PATCH 0599/1217] Added checksums Minor tweaks for consistency --- easybuild/easyconfigs/g/GCC/GCC-4.1.2.eb | 4 ++++ easybuild/easyconfigs/g/GCC/GCC-4.2.4.eb | 4 ++++ easybuild/easyconfigs/g/GCC/GCC-4.3.6.eb | 4 ++++ easybuild/easyconfigs/g/GCC/GCC-4.4.7.eb | 4 ++++ .../easyconfigs/g/GCC/GCC-4.5.3-CLooG-PPL.eb | 10 +++++++++- easybuild/easyconfigs/g/GCC/GCC-4.5.3.eb | 7 +++++++ .../easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb | 9 +++++++++ easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb | 7 +++++++ easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb | 12 +++++++++-- .../easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb | 10 ++++++++++ easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb | 20 +++++++++++++------ .../easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb | 10 ++++++++++ easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb | 8 ++++++++ easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb | 16 +++++++++++---- .../easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb | 11 ++++++++++ easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb | 8 ++++++++ .../easyconfigs/g/GCC/GCC-4.7.4-CLooG-PPL.eb | 11 ++++++++++ easybuild/easyconfigs/g/GCC/GCC-4.7.4.eb | 8 ++++++++ .../easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb | 9 +++++++++ easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb | 7 +++++++ .../g/GCC/GCC-4.8.2-CLooG-multilib.eb | 9 +++++++++ .../easyconfigs/g/GCC/GCC-4.8.2-CLooG.eb | 9 +++++++++ .../easyconfigs/g/GCC/GCC-4.8.2-multilib.eb | 7 +++++++ easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb | 7 +++++++ .../g/GCC/GCC-4.8.3-CLooG-multilib.eb | 9 +++++++++ easybuild/easyconfigs/g/GCC/GCC-4.8.3.eb | 7 +++++++ .../g/GCC/GCC-4.8.4-CLooG-multilib.eb | 9 +++++++++ .../easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb | 9 +++++++++ easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb | 7 +++++++ .../g/GCC/GCC-4.9.0-CLooG-multilib.eb | 15 +++++++++++--- .../easyconfigs/g/GCC/GCC-4.9.0-CLooG.eb | 15 +++++++++++--- easybuild/easyconfigs/g/GCC/GCC-4.9.0.eb | 13 +++++++++--- .../g/GCC/GCC-4.9.1-CLooG-multilib.eb | 15 +++++++++++--- .../easyconfigs/g/GCC/GCC-4.9.1-CLooG.eb | 15 +++++++++++--- easybuild/easyconfigs/g/GCC/GCC-4.9.1.eb | 13 +++++++++--- .../g/GCC/GCC-4.9.2-CLooG-multilib.eb | 15 +++++++++++--- .../easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb | 15 +++++++++++--- easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb | 13 +++++++++--- 38 files changed, 341 insertions(+), 40 deletions(-) diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.1.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.1.2.eb index 42a1d25324..15db97e462 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.1.2.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.1.2.eb @@ -10,6 +10,10 @@ toolchain = {'name': 'dummy', 'version': ''} # empty version to ensure that dep source_urls = ['http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s'] sources = [SOURCELOWER_TAR_BZ2] +checksums = [ + 'a4a3eb15c96030906d8494959eeda23c', # gcc-4.1.2.tar.bz2 +] + dependencies = [ ('GMP', '4.3.2'), ('MPFR', '2.4.2'), diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.2.4.eb b/easybuild/easyconfigs/g/GCC/GCC-4.2.4.eb index 3ccecb918f..690c94392b 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.2.4.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.2.4.eb @@ -10,6 +10,10 @@ toolchain = {'name': 'dummy', 'version': ''} # empty version to ensure that dep source_urls = ['http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s'] sources = [SOURCELOWER_TAR_BZ2] +checksums = [ + 'd79f553e7916ea21c556329eacfeaa16', # gcc-4.2.4.tar.bz2 +] + dependencies = [ ('GMP', '4.3.2'), ('MPFR', '2.4.2'), diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.3.6.eb b/easybuild/easyconfigs/g/GCC/GCC-4.3.6.eb index b182cdcc48..d2df4b4c42 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.3.6.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.3.6.eb @@ -10,6 +10,10 @@ toolchain = {'name': 'dummy', 'version': ''} # empty version to ensure that dep source_urls = ['http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s'] sources = [SOURCELOWER_TAR_BZ2] +checksums = [ + '55ddf934bc9f8d1eaff7a77e7d598a85', # gcc-4.3.6.tar.bz2 +] + dependencies = [ ('GMP', '4.3.2'), ('MPFR', '2.4.2'), diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.4.7.eb b/easybuild/easyconfigs/g/GCC/GCC-4.4.7.eb index dd92bece57..584afb9b7c 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.4.7.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.4.7.eb @@ -10,6 +10,10 @@ toolchain = {'name': 'dummy', 'version': ''} # empty version to ensure that dep source_urls = ['http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s'] sources = [SOURCELOWER_TAR_BZ2] +checksums = [ + '295709feb4441b04e87dea3f1bab4281', # gcc-4.4.7.tar.bz2 +] + dependencies = [ ('GMP', '4.3.2'), ('MPFR', '2.4.2'), diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.5.3-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.5.3-CLooG-PPL.eb index 910274c9af..bcb7fd7639 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.5.3-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.5.3-CLooG-PPL.eb @@ -20,7 +20,6 @@ source_urls = [ 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies, for PPL and CLooG-PPL 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies ] - sources = [ SOURCELOWER_TAR_GZ, 'gmp-5.0.2.tar.gz', @@ -30,6 +29,15 @@ sources = [ 'ppl-%s.tar.gz' % pplver, ] +checksums = [ + 'bf100d5b3b88f7938752e43c90e48f48', # gcc-4.5.3.tar.gz + '87e73447afdc2ca5cefd987da865da51', # gmp-5.0.2.tar.gz + 'e9c191fc46a4f5741f8a0a11ab33b8bf', # mpfr-3.0.1.tar.gz + 'e98267ebd5648a39f881d66797122fb6', # mpc-0.8.2.tar.gz + '060ae4df6fb8176e021b4d033a6c0b9e', # cloog-ppl-0.15.11.tar.gz + 'ba527ec0ffc830ce16fad8a4195a337e', # ppl-0.11.tar.gz +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.5.3.eb b/easybuild/easyconfigs/g/GCC/GCC-4.5.3.eb index 625423d639..9a31d20e93 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.5.3.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.5.3.eb @@ -20,6 +20,13 @@ sources = [ 'mpc-0.8.2.tar.gz', ] +checksums = [ + 'bf100d5b3b88f7938752e43c90e48f48', # gcc-4.5.3.tar.gz + '87e73447afdc2ca5cefd987da865da51', # gmp-5.0.2.tar.gz + 'e9c191fc46a4f5741f8a0a11ab33b8bf', # mpfr-3.0.1.tar.gz + 'e98267ebd5648a39f881d66797122fb6', # mpc-0.8.2.tar.gz +] + languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb index 212d837eb2..3a9114bc86 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.6.3-CLooG-PPL.eb @@ -29,6 +29,15 @@ sources = [ 'ppl-%s.tar.gz' % pplver, ] +checksums = [ + 'c51e55130ab9ca3e5f34014cac15dd39', # gcc-4.6.3.tar.gz + '50c3edcb7c9438e04377ee9a1a061b79', # gmp-5.0.4.tar.bz2 + 'e9c191fc46a4f5741f8a0a11ab33b8bf', # mpfr-3.0.1.tar.gz + '0d6acab8d214bd7d1fbbc593e83dd00d', # mpc-0.9.tar.gz + '060ae4df6fb8176e021b4d033a6c0b9e', # cloog-ppl-0.15.11.tar.gz + '47a5548d4e3d98cf6b97e4fd3e5db513', # ppl-0.12.tar.gz +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb b/easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb index 97b63a7dfa..884bd3660e 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.6.3.eb @@ -20,6 +20,13 @@ sources = [ 'mpc-0.9.tar.gz', ] +checksums = [ + 'c51e55130ab9ca3e5f34014cac15dd39', # gcc-4.6.3.tar.gz + '50c3edcb7c9438e04377ee9a1a061b79', # gmp-5.0.4.tar.bz2 + 'e9c191fc46a4f5741f8a0a11ab33b8bf', # mpfr-3.0.1.tar.gz + '0d6acab8d214bd7d1fbbc593e83dd00d', # mpc-0.9.tar.gz +] + languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb b/easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb index 612489b92c..6d06e3dc27 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.6.4.eb @@ -20,10 +20,18 @@ sources = [ 'mpc-1.0.1.tar.gz', ] -languages = ['c', 'c++', 'fortran'] - patches = ['mpfr-3.1.0-changes_fix.patch'] +checksums = [ + 'a8f15fc233589924ccd8cc8140b0ca3c', # gcc-4.6.4.tar.gz + '2fa018a7cd193c78494525f236d02dd6', # gmp-5.1.1.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + +languages = ['c', 'c++', 'fortran'] + # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb index 30d7d0fa79..b46830b3c9 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.0-CLooG-PPL.eb @@ -31,6 +31,16 @@ sources = [ patches = ['mpfr-3.1.0-changes_fix.patch'] +checksums = [ + 'ef5117788e27ffef05f8b8adf46f91d8', # gcc-4.7.0.tar.gz + '50c3edcb7c9438e04377ee9a1a061b79', # gmp-5.0.4.tar.bz2 + '10968131acc26d79311ac4f8982ff078', # mpfr-3.1.0.tar.gz + '0d6acab8d214bd7d1fbbc593e83dd00d', # mpc-0.9.tar.gz + '947123350d1ff6dcb4b0774947ac015a', # cloog-0.16.1.tar.gz + '47a5548d4e3d98cf6b97e4fd3e5db513', # ppl-0.12.tar.gz + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb index 1782b94bb7..25a490f355 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.0.eb @@ -7,21 +7,29 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} -sources = [ - SOURCELOWER_TAR_GZ, - 'gmp-5.0.4.tar.bz2', - 'mpfr-3.1.0.tar.gz', - 'mpc-0.9.tar.gz', -] source_urls = [ 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror 'http://ftpmirror.gnu.org/gmp', # idem for GMP 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] +sources = [ + SOURCELOWER_TAR_GZ, + 'gmp-5.0.4.tar.bz2', + 'mpfr-3.1.0.tar.gz', + 'mpc-0.9.tar.gz', +] patches = ['mpfr-3.1.0-changes_fix.patch'] +checksums = [ + 'ef5117788e27ffef05f8b8adf46f91d8', # gcc-4.7.0.tar.gz + '50c3edcb7c9438e04377ee9a1a061b79', # gmp-5.0.4.tar.bz2 + '10968131acc26d79311ac4f8982ff078', # mpfr-3.1.0.tar.gz + '0d6acab8d214bd7d1fbbc593e83dd00d', # mpc-0.9.tar.gz + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb index 4b5d149d00..6c58ae7bc6 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.1-CLooG-PPL.eb @@ -31,6 +31,16 @@ sources = [ patches = ['mpfr-3.1.0-changes_fix.patch'] +checksums = [ + '3d06e24570635c91eed6b114687513a6', # gcc-4.7.1.tar.gz + '041487d25e9c230b0c42b106361055fe', # gmp-5.0.5.tar.bz2 + '769411e241a3f063ae1319eb5fac2462', # mpfr-3.1.1.tar.gz + '13370ceb2e266c5eeb2f7e78c24b7858', # mpc-1.0.tar.gz + 'a0f8a241cd1c4f103f8d2c91642b3498', # cloog-0.16.3.tar.gz + '47a5548d4e3d98cf6b97e4fd3e5db513', # ppl-0.12.tar.gz + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb index ca98da2565..b3ad3f8087 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.1.eb @@ -22,6 +22,14 @@ sources = [ patches = ['mpfr-3.1.0-changes_fix.patch'] +checksums = [ + '3d06e24570635c91eed6b114687513a6', # gcc-4.7.1.tar.gz + '041487d25e9c230b0c42b106361055fe', # gmp-5.0.5.tar.bz2 + '769411e241a3f063ae1319eb5fac2462', # mpfr-3.1.1.tar.gz + '13370ceb2e266c5eeb2f7e78c24b7858', # mpc-1.0.tar.gz + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb index 12e831324b..decee62a58 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.2.eb @@ -8,10 +8,10 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR - 'http://www.multiprecision.org/mpc/download', # MPC official + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official ] sources = [ SOURCELOWER_TAR_GZ, @@ -22,6 +22,14 @@ sources = [ patches = ['mpfr-3.1.0-changes_fix.patch'] +checksums = [ + '5199d34506d4fa6528778ddba362d3f4', # gcc-4.7.2.tar.gz + '041487d25e9c230b0c42b106361055fe', # gmp-5.0.5.tar.bz2 + '769411e241a3f063ae1319eb5fac2462', # mpfr-3.1.1.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb index b9d63d8009..8f5cae195c 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.3-CLooG-PPL.eb @@ -34,6 +34,17 @@ patches = [ 'mpfr-3.1.0-changes_fix.patch', ] +checksums = [ + 'd518eace24a53aef59c2c69498ea4989', # gcc-4.7.3.tar.gz + '7e3516128487956cd825fef01aafe4bc', # gmp-5.1.2.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'a0f8a241cd1c4f103f8d2c91642b3498', # cloog-0.16.3.tar.gz + 'cec8144f2072ac45a850214cca97d075', # ppl-0.12.1.tar.gz + 'b6153bac75ee9e2a78e08ee97bf045f2', # ppl-0.12.1-mpfr.patch + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb index 09e9dae03b..03f65ea5f0 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.3.eb @@ -22,6 +22,14 @@ sources = [ patches = ['mpfr-3.1.0-changes_fix.patch'] +checksums = [ + 'd518eace24a53aef59c2c69498ea4989', # gcc-4.7.3.tar.gz + '2fa018a7cd193c78494525f236d02dd6', # gmp-5.1.1.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.4-CLooG-PPL.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.4-CLooG-PPL.eb index e5ae9ca655..da943f7026 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.4-CLooG-PPL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.4-CLooG-PPL.eb @@ -34,6 +34,17 @@ patches = [ 'mpfr-3.1.0-changes_fix.patch', ] +checksums = [ + 'f07a9c4078dbccdcc18bc840ab5e0fe9', # gcc-4.7.4.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'a0f8a241cd1c4f103f8d2c91642b3498', # cloog-0.16.3.tar.gz + 'cec8144f2072ac45a850214cca97d075', # ppl-0.12.1.tar.gz + 'b6153bac75ee9e2a78e08ee97bf045f2', # ppl-0.12.1-mpfr.patch + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.7.4.eb b/easybuild/easyconfigs/g/GCC/GCC-4.7.4.eb index 986014a36d..5d688569b0 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.7.4.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.7.4.eb @@ -22,6 +22,14 @@ sources = [ patches = ['mpfr-3.1.0-changes_fix.patch'] +checksums = [ + 'f07a9c4078dbccdcc18bc840ab5e0fe9', # gcc-4.7.4.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'fa4095252d843d465ac9aa5e2d760dd8', # mpfr-3.1.0-changes_fix.patch +] + languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb index 5ccb3091a1..97ecab725e 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.1-CLooG.eb @@ -26,6 +26,15 @@ sources = [ 'isl-0.11.1.tar.bz2', ] +checksums = [ + '74cc12b7afe051ab7d0e00269e49fc9b', # gcc-4.8.1.tar.gz + '7e3516128487956cd825fef01aafe4bc', # gmp-5.1.2.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'be78a47bd82523250eb3e91646db5b3d', # cloog-0.18.0.tar.gz + 'bce1586384d8635a76d2f017fb067cd2', # isl-0.11.1.tar.bz2 +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb index d59607eece..18a5c26a04 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.1.eb @@ -20,6 +20,13 @@ sources = [ 'mpc-1.0.1.tar.gz', ] +checksums = [ + '74cc12b7afe051ab7d0e00269e49fc9b', # gcc-4.8.1.tar.gz + '7e3516128487956cd825fef01aafe4bc', # gmp-5.1.2.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz +] + languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG-multilib.eb index 64fb3ab48a..0cc4d2d8be 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG-multilib.eb @@ -26,6 +26,15 @@ sources = [ 'isl-0.11.1.tar.bz2', ] +checksums = [ + 'deca88241c1135e2ff9fa5486ab5957b', # gcc-4.8.2.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'be78a47bd82523250eb3e91646db5b3d', # cloog-0.18.0.tar.gz + 'bce1586384d8635a76d2f017fb067cd2', # isl-0.11.1.tar.bz2 +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG.eb index 64e4242a83..76ee08688e 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-CLooG.eb @@ -26,6 +26,15 @@ sources = [ 'isl-0.11.1.tar.bz2', ] +checksums = [ + 'deca88241c1135e2ff9fa5486ab5957b', # gcc-4.8.2.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'be78a47bd82523250eb3e91646db5b3d', # cloog-0.18.0.tar.gz + 'bce1586384d8635a76d2f017fb067cd2', # isl-0.11.1.tar.bz2 +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-multilib.eb index 1e4a0b8b5b..45168e2586 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.2-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.2-multilib.eb @@ -21,6 +21,13 @@ sources = [ 'mpc-1.0.1.tar.gz', ] +checksums = [ + 'deca88241c1135e2ff9fa5486ab5957b', # gcc-4.8.2.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz +] + languages = ['c', 'c++', 'fortran'] multilib = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb index dcddef3500..4f8e1b941b 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.2.eb @@ -20,6 +20,13 @@ sources = [ 'mpc-1.0.1.tar.gz', ] +checksums = [ + 'deca88241c1135e2ff9fa5486ab5957b', # gcc-4.8.2.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz +] + languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb index 35b2688a1c..cdf28092c4 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb @@ -26,6 +26,15 @@ sources = [ 'isl-0.11.1.tar.bz2', ] +checksums = [ + 'e2c60f5ef918be2db08df96c7d97d0c4', # gcc-4.8.3.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'bce1586384d8635a76d2f017fb067cd2', # isl-0.11.1.tar.bz2 +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.3.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.3.eb index b72eb0f106..10a1ebfca0 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.3.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.3.eb @@ -20,6 +20,13 @@ sources = [ 'mpc-1.0.1.tar.gz', ] +checksums = [ + 'e2c60f5ef918be2db08df96c7d97d0c4', # gcc-4.8.3.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz +] + languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb index ed620cefc6..621a6661ef 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb @@ -26,6 +26,15 @@ sources = [ 'isl-0.11.1.tar.bz2', ] +checksums = [ + '0c92ac45af5b280e301ca56b40fdaea2', # gcc-4.8.4.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'bce1586384d8635a76d2f017fb067cd2', # isl-0.11.1.tar.bz2 +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb index f700348861..7dd0f5df24 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG.eb @@ -26,6 +26,15 @@ sources = [ 'isl-0.11.1.tar.bz2', ] +checksums = [ + '0c92ac45af5b280e301ca56b40fdaea2', # gcc-4.8.4.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz + 'be78a47bd82523250eb3e91646db5b3d', # cloog-0.18.0.tar.gz + 'bce1586384d8635a76d2f017fb067cd2', # isl-0.11.1.tar.bz2 +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb index fa49500c29..5ac47478fb 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.4.eb @@ -20,6 +20,13 @@ sources = [ 'mpc-1.0.1.tar.gz', ] +checksums = [ + '0c92ac45af5b280e301ca56b40fdaea2', # gcc-4.8.4.tar.gz + 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz +] + languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG-multilib.eb index 965fc73198..f77a70efc3 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG-multilib.eb @@ -8,6 +8,8 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} +mpfr_version = '3.1.2' + source_urls = [ 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror 'http://ftpmirror.gnu.org/gmp', # idem for GMP @@ -17,9 +19,6 @@ source_urls = [ 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies ] - -mpfr_version = '3.1.2' - sources = [ SOURCELOWER_TAR_BZ2, 'gmp-6.0.0a.tar.bz2', @@ -31,6 +30,16 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] +checksums = [ + '9709b49ae0e904cbb0a6a1b62853b556', # gcc-4.9.0.tar.bz2 + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'e039bfcfb6c2ab039b8ee69bf883e824', # isl-0.12.2.tar.bz2 + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG.eb index 9a94681363..9974833bba 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.0-CLooG.eb @@ -8,6 +8,8 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} +mpfr_version = '3.1.2' + source_urls = [ 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror 'http://ftpmirror.gnu.org/gmp', # idem for GMP @@ -17,9 +19,6 @@ source_urls = [ 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies ] - -mpfr_version = '3.1.2' - sources = [ SOURCELOWER_TAR_BZ2, 'gmp-6.0.0a.tar.bz2', @@ -31,6 +30,16 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] +checksums = [ + '9709b49ae0e904cbb0a6a1b62853b556', # gcc-4.9.0.tar.bz2 + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'e039bfcfb6c2ab039b8ee69bf883e824', # isl-0.12.2.tar.bz2 + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.0.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.0.eb index 3f14a7a026..cd09534c39 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.0.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.0.eb @@ -7,15 +7,14 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} +mpfr_version = '3.1.2' + source_urls = [ 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror 'http://ftpmirror.gnu.org/gmp', # idem for GMP 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] - -mpfr_version = '3.1.2' - sources = [ SOURCELOWER_TAR_BZ2, 'gmp-6.0.0a.tar.bz2', @@ -25,6 +24,14 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] +checksums = [ + '9709b49ae0e904cbb0a6a1b62853b556', # gcc-4.9.0.tar.bz2 + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG-multilib.eb index 77bc3a952c..a3c67d644e 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG-multilib.eb @@ -8,6 +8,8 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} +mpfr_version = '3.1.2' + source_urls = [ 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror 'http://ftpmirror.gnu.org/gmp', # idem for GMP @@ -17,9 +19,6 @@ source_urls = [ 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies ] - -mpfr_version = '3.1.2' - sources = [ SOURCELOWER_TAR_BZ2, 'gmp-6.0.0a.tar.bz2', @@ -31,6 +30,16 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] +checksums = [ + 'fddf71348546af523353bd43d34919c1', # gcc-4.9.1.tar.gz + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'e039bfcfb6c2ab039b8ee69bf883e824', # isl-0.12.2.tar.bz2 + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG.eb index c6f4f49acc..b78ac53014 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.1-CLooG.eb @@ -8,6 +8,8 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} +mpfr_version = '3.1.2' + source_urls = [ 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror 'http://ftpmirror.gnu.org/gmp', # idem for GMP @@ -17,9 +19,6 @@ source_urls = [ 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies ] - -mpfr_version = '3.1.2' - sources = [ SOURCELOWER_TAR_BZ2, 'gmp-6.0.0a.tar.bz2', @@ -31,6 +30,16 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] +checksums = [ + 'fddf71348546af523353bd43d34919c1', # gcc-4.9.1.tar.gz + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'e039bfcfb6c2ab039b8ee69bf883e824', # isl-0.12.2.tar.bz2 + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.1.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.1.eb index c888d0b270..21e41342d3 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.1.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.1.eb @@ -7,15 +7,14 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} +mpfr_version = '3.1.2' + source_urls = [ 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror 'http://ftpmirror.gnu.org/gmp', # idem for GMP 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] - -mpfr_version = '3.1.2' - sources = [ SOURCELOWER_TAR_BZ2, 'gmp-6.0.0a.tar.bz2', @@ -25,6 +24,14 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] +checksums = [ + 'fddf71348546af523353bd43d34919c1', # gcc-4.9.1.tar.gz + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb index 338efeb6d4..0906283ab2 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG-multilib.eb @@ -8,6 +8,8 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} +mpfr_version = '3.1.2' + source_urls = [ 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror 'http://ftpmirror.gnu.org/gmp', # idem for GMP @@ -17,9 +19,6 @@ source_urls = [ 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies ] - -mpfr_version = '3.1.2' - sources = [ SOURCELOWER_TAR_BZ2, 'gmp-6.0.0a.tar.bz2', @@ -31,6 +30,16 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] +checksums = [ + '4df8ee253b7f3863ad0b86359cd39c43', # gcc-4.9.2.tar.bz2 + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'e039bfcfb6c2ab039b8ee69bf883e824', # isl-0.12.2.tar.bz2 + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb index 82dd583d70..1af6bd9c36 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-CLooG.eb @@ -8,6 +8,8 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} +mpfr_version = '3.1.2' + source_urls = [ 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror 'http://ftpmirror.gnu.org/gmp', # idem for GMP @@ -17,9 +19,6 @@ source_urls = [ 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies ] - -mpfr_version = '3.1.2' - sources = [ SOURCELOWER_TAR_BZ2, 'gmp-6.0.0a.tar.bz2', @@ -31,6 +30,16 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] +checksums = [ + '4df8ee253b7f3863ad0b86359cd39c43', # gcc-4.9.2.tar.bz2 + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'e039bfcfb6c2ab039b8ee69bf883e824', # isl-0.12.2.tar.bz2 + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + languages = ['c', 'c++', 'fortran'] withcloog = True diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb index f1c7b80023..cb9f3aa4f2 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb @@ -7,15 +7,14 @@ description = """The GNU Compiler Collection includes front ends for C, C++, Obj toolchain = {'name': 'dummy', 'version': 'dummy'} +mpfr_version = '3.1.2' + source_urls = [ 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror 'http://ftpmirror.gnu.org/gmp', # idem for GMP 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official ] - -mpfr_version = '3.1.2' - sources = [ SOURCELOWER_TAR_BZ2, 'gmp-6.0.0a.tar.bz2', @@ -25,6 +24,14 @@ sources = [ patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] +checksums = [ + '4df8ee253b7f3863ad0b86359cd39c43', # gcc-4.9.2.tar.bz2 + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + languages = ['c', 'c++', 'fortran'] # building GCC sometimes fails if make parallelism is too high, so let's limit it -- GitLab From 46359e89b96e87545ae741210900feef997932b7 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 10 Feb 2015 10:24:59 +0100 Subject: [PATCH 0600/1217] bump to hwloc/1.10.1-GCC-4.8.4 Signed-off-by: Fotis Georgatos --- ...GCC-4.8.4.eb => hwloc-1.10.1-GCC-4.8.4.eb} | 2 +- .../n/numactl/numactl-2.0.9-GCC-4.8.4.eb | 24 ------------------- .../o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb | 2 +- 3 files changed, 2 insertions(+), 26 deletions(-) rename easybuild/easyconfigs/h/hwloc/{hwloc-1.10.0-GCC-4.8.4.eb => hwloc-1.10.1-GCC-4.8.4.eb} (98%) delete mode 100644 easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.4.eb diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.8.4.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GCC-4.8.4.eb similarity index 98% rename from easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.8.4.eb rename to easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GCC-4.8.4.eb index 48456705b1..117203c855 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GCC-4.8.4.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'hwloc' -version = "1.10.0" +version = "1.10.1" homepage = 'http://www.open-mpi.org/projects/hwloc/' description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.4.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.4.eb deleted file mode 100644 index 631c25771b..0000000000 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.4.eb +++ /dev/null @@ -1,24 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'numactl' -version = '2.0.9' - -homepage = 'http://oss.sgi.com/projects/libnuma/' -description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. -It does this by supplying a NUMA memory policy to the operating system before running your program. -The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" - -sources = [SOURCE_TAR_GZ] -source_urls = ["ftp://oss.sgi.com/www/projects/libnuma/download/"] - -toolchain = {'name': 'GCC', 'version': '4.8.4'} - -skipsteps = ['configure'] -installopts = "PREFIX=%(installdir)s libdir='${prefix}/lib'" - -sanity_check_paths = { - 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], - 'dirs': ['share/man', 'include'] -} - -moduleclass = 'tools' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb index bf74f56b70..31dfab1648 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'GCC', 'version': '4.8.4'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] -dependencies = [('hwloc', '1.10.0')] +dependencies = [('hwloc', '1.10.1')] configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path -- GitLab From d81646903c3f36ceb4b8a760bf39d4b92f12ac48 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 10 Feb 2015 10:34:25 +0100 Subject: [PATCH 0601/1217] bump to libtool/2.4.5 Signed-off-by: Fotis Georgatos --- .../{libtool-2.4.2-GCC-4.8.4.eb => libtool-2.4.5-GCC-4.8.4.eb} | 2 +- easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) rename easybuild/easyconfigs/l/libtool/{libtool-2.4.2-GCC-4.8.4.eb => libtool-2.4.5-GCC-4.8.4.eb} (95%) diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.4.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.8.4.eb similarity index 95% rename from easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.4.eb rename to easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.8.4.eb index 82d1212976..f9f513b45f 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.8.4.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'libtool' -version = '2.4.2' +version = '2.4.5' homepage = 'http://www.gnu.org/software/libtool' description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb index 4e761b0ac5..6e81e95581 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb @@ -17,7 +17,7 @@ sources = [SOURCE_TAR_GZ] builddependencies = [ ('Automake', '1.15'), - ('libtool', '2.4.2'), + ('libtool', '2.4.5'), ] preconfigopts = './autogen.sh && ' -- GitLab From 3e2c4d52bbc8424e5ae27fe1c8ca4ce374d1e85e Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 10 Feb 2015 10:55:24 +0100 Subject: [PATCH 0602/1217] update #1294 as per comments in PR Signed-off-by: Fotis Georgatos --- ...TW-3.3.4-gompi-1.6.20.eb => FFTW-3.3.4-gompi-1.7.20.eb} | 2 +- .../g/gompi/{gompi-1.6.20.eb => gompi-1.7.20.eb} | 7 ++----- .../g/goolf/{goolf-1.6.20.eb => goolf-1.7.20.eb} | 2 +- .../{HPL-2.1-goolf-1.6.20.eb => HPL-2.1-goolf-1.7.20.eb} | 2 +- easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GCC-4.8.4.eb | 6 +++--- .../easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb | 5 ++--- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb | 6 +----- ...ACK-2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb} | 2 +- 8 files changed, 12 insertions(+), 20 deletions(-) rename easybuild/easyconfigs/f/FFTW/{FFTW-3.3.4-gompi-1.6.20.eb => FFTW-3.3.4-gompi-1.7.20.eb} (96%) rename easybuild/easyconfigs/g/gompi/{gompi-1.6.20.eb => gompi-1.7.20.eb} (81%) rename easybuild/easyconfigs/g/goolf/{goolf-1.6.20.eb => goolf-1.7.20.eb} (98%) rename easybuild/easyconfigs/h/HPL/{HPL-2.1-goolf-1.6.20.eb => HPL-2.1-goolf-1.7.20.eb} (92%) rename easybuild/easyconfigs/s/ScaLAPACK/{ScaLAPACK-2.0.2-gompi-1.6.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb => ScaLAPACK-2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb} (92%) diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.6.20.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.7.20.eb similarity index 96% rename from easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.6.20.eb rename to easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.7.20.eb index 002bd8dda5..716715a07e 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.6.20.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.7.20.eb @@ -7,7 +7,7 @@ homepage = 'http://www.fftw.org' description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.""" -toolchain = {'name': 'gompi', 'version': '1.6.20'} +toolchain = {'name': 'gompi', 'version': '1.7.20'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/g/gompi/gompi-1.6.20.eb b/easybuild/easyconfigs/g/gompi/gompi-1.7.20.eb similarity index 81% rename from easybuild/easyconfigs/g/gompi/gompi-1.6.20.eb rename to easybuild/easyconfigs/g/gompi/gompi-1.7.20.eb index a2dd8f90be..62fc761f97 100644 --- a/easybuild/easyconfigs/g/gompi/gompi-1.6.20.eb +++ b/easybuild/easyconfigs/g/gompi/gompi-1.7.20.eb @@ -1,7 +1,7 @@ easyblock = "Toolchain" name = 'gompi' -version = '1.6.20' +version = '1.7.20' homepage = '(none)' description = """GNU Compiler Collection (GCC) based compiler toolchain, @@ -13,13 +13,10 @@ compname = 'GCC' compver = '4.8.4' comp = (compname, compver) -mpilib = 'OpenMPI' -mpiver = '1.8.4' - # compiler toolchain dependencies dependencies = [ comp, - (mpilib, mpiver, '', comp), + ('OpenMPI', '1.8.4', '', comp), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/goolf/goolf-1.6.20.eb b/easybuild/easyconfigs/g/goolf/goolf-1.7.20.eb similarity index 98% rename from easybuild/easyconfigs/g/goolf/goolf-1.6.20.eb rename to easybuild/easyconfigs/g/goolf/goolf-1.7.20.eb index 635ab13824..63245fe52b 100644 --- a/easybuild/easyconfigs/g/goolf/goolf-1.6.20.eb +++ b/easybuild/easyconfigs/g/goolf/goolf-1.7.20.eb @@ -1,7 +1,7 @@ easyblock = "Toolchain" name = 'goolf' -version = '1.6.20' +version = '1.7.20' homepage = '(none)' description = """GNU Compiler Collection (GCC) based compiler toolchain, including diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.6.20.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.7.20.eb similarity index 92% rename from easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.6.20.eb rename to easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.7.20.eb index c245a1d304..fd109a8fed 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.6.20.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.7.20.eb @@ -6,7 +6,7 @@ description = """HPL is a software package that solves a (random) dense linear s on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.""" -toolchain = {'name': 'goolf', 'version': '1.6.20'} +toolchain = {'name': 'goolf', 'version': '1.7.20'} toolchainopts = {'optarch': True, 'usempi': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GCC-4.8.4.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GCC-4.8.4.eb index 117203c855..6adedf3a5d 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GCC-4.8.4.eb @@ -13,11 +13,11 @@ description = """The Portable Hardware Locality (hwloc) software package provide toolchain = {'name': 'GCC', 'version': '4.8.4'} +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + dependencies = [('numactl', '2.0.10')] configopts = "--enable-libnuma=$EBROOTNUMACTL" -source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] -sources = [SOURCE_TAR_GZ] - moduleclass = 'system' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb index 6e81e95581..e56d4ba751 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb @@ -3,8 +3,6 @@ easyblock = 'ConfigureMake' name = 'numactl' version = '2.0.10' -checksums = ['682c38305b2596967881f3d77bc3fc9c'] - homepage = 'http://oss.sgi.com/projects/libnuma/' description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. @@ -15,6 +13,8 @@ toolchain = {'name': 'GCC', 'version': '4.8.4'} source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] sources = [SOURCE_TAR_GZ] +checksums = ['682c38305b2596967881f3d77bc3fc9c'] + builddependencies = [ ('Automake', '1.15'), ('libtool', '2.4.5'), @@ -22,7 +22,6 @@ builddependencies = [ preconfigopts = './autogen.sh && ' - sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], 'dirs': ['share/man', 'include'] diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb index 31dfab1648..4450b68758 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb @@ -19,11 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.6.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb similarity index 92% rename from easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.6.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb rename to easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb index 7c911189b3..94cfcc38e5 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.6.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb @@ -5,7 +5,7 @@ homepage = 'http://www.netlib.org/scalapack/' description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.""" -toolchain = {'name': 'gompi', 'version': '1.6.20'} +toolchain = {'name': 'gompi', 'version': '1.7.20'} toolchainopts = {'pic': True} source_urls = [homepage] -- GitLab From 201e790ba97e5034af0637f9a06219e85175842b Mon Sep 17 00:00:00 2001 From: Markus Geimer Date: Tue, 10 Feb 2015 12:11:12 +0100 Subject: [PATCH 0603/1217] Consistently use CLooG 0.18.0 for GCC 4.8 series --- easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb | 4 ++-- easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb | 4 ++-- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb index cdf28092c4..8f71a86f5f 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.3-CLooG-multilib.eb @@ -22,7 +22,7 @@ sources = [ 'gmp-5.1.3.tar.bz2', 'mpfr-3.1.2.tar.gz', 'mpc-1.0.1.tar.gz', - 'cloog-0.18.1.tar.gz', + 'cloog-0.18.0.tar.gz', 'isl-0.11.1.tar.bz2', ] @@ -31,7 +31,7 @@ checksums = [ 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz - 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'be78a47bd82523250eb3e91646db5b3d', # cloog-0.18.0.tar.gz 'bce1586384d8635a76d2f017fb067cd2', # isl-0.11.1.tar.bz2 ] diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb index 621a6661ef..a553c070ef 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.8.4-CLooG-multilib.eb @@ -22,7 +22,7 @@ sources = [ 'gmp-5.1.3.tar.bz2', 'mpfr-3.1.2.tar.gz', 'mpc-1.0.1.tar.gz', - 'cloog-0.18.1.tar.gz', + 'cloog-0.18.0.tar.gz', 'isl-0.11.1.tar.bz2', ] @@ -31,7 +31,7 @@ checksums = [ 'a082867cbca5e898371a97bb27b31fea', # gmp-5.1.3.tar.bz2 '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz 'b32a2e1a3daa392372fbd586d1ed3679', # mpc-1.0.1.tar.gz - 'e34fca0540d840e5d0f6427e98c92252', # cloog-0.18.1.tar.gz + 'be78a47bd82523250eb3e91646db5b3d', # cloog-0.18.0.tar.gz 'bce1586384d8635a76d2f017fb067cd2', # isl-0.11.1.tar.bz2 ] -- GitLab From 9b3aaff010f87324ca2cc854fb58d7677dc16263 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 10 Feb 2015 16:32:01 +0100 Subject: [PATCH 0604/1217] add M4 as builddep Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.8.4.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.8.4.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.8.4.eb index f9f513b45f..f1e3238f19 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.8.4.eb @@ -9,6 +9,8 @@ description = """GNU libtool is a generic library support script. Libtool hides toolchain = {'name': 'GCC', 'version': '4.8.4'} +builddependencies = [('M4', '1.4.17')] + sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] -- GitLab From 0b384057c93037c57d80dd61726501efb5bece5a Mon Sep 17 00:00:00 2001 From: Pablo Escobar Lopez Date: Tue, 10 Feb 2015 17:11:51 +0100 Subject: [PATCH 0605/1217] added toolchain intel-2015.02.eb --- .../i/icc/icc-2015.2.164-GCC-4.9.2.eb | 25 +++++++++++++++++++ .../iccifort/iccifort-2015.2.164-GCC-4.9.2.eb | 17 +++++++++++++ .../i/ifort/ifort-2015.2.164-GCC-4.9.2.eb | 24 ++++++++++++++++++ .../i/iimpi/iimpi-7.2.5-GCC-4.9.2.eb | 21 ++++++++++++++++ .../imkl-11.2.2.164-iimpi-7.2.5-GCC-4.9.2.eb | 22 ++++++++++++++++ ...5.0.2.044-iccifort-2015.2.164-GCC-4.9.2.eb | 20 +++++++++++++++ .../easyconfigs/i/intel/intel-2015.02.eb | 21 ++++++++++++++++ 7 files changed, 150 insertions(+) create mode 100644 easybuild/easyconfigs/i/icc/icc-2015.2.164-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/i/iccifort/iccifort-2015.2.164-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/i/ifort/ifort-2015.2.164-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/i/iimpi/iimpi-7.2.5-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/i/imkl/imkl-11.2.2.164-iimpi-7.2.5-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.2.164-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/i/intel/intel-2015.02.eb diff --git a/easybuild/easyconfigs/i/icc/icc-2015.2.164-GCC-4.9.2.eb b/easybuild/easyconfigs/i/icc/icc-2015.2.164-GCC-4.9.2.eb new file mode 100644 index 0000000000..64131e9b0c --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2015.2.164-GCC-4.9.2.eb @@ -0,0 +1,25 @@ +name = 'icc' +version = '2015.2.164' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_ccompxe_%(version)s.tgz'] + +gcc = 'GCC' +gccver = '4.9.2' +versionsuffix = '-%s-%s' % (gcc, gccver) + +dependencies = [(gcc, gccver)] + +dontcreateinstalldir = 'True' + +# license file +#import os +#license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") +license_file = '/import/bc2/soft/source/i/icc/COM_L__CPP_RSCN-FRFDSRTL.lic' + +moduleclass = 'compiler' + diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2015.2.164-GCC-4.9.2.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2015.2.164-GCC-4.9.2.eb new file mode 100644 index 0000000000..26bfe2f84a --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2015.2.164-GCC-4.9.2.eb @@ -0,0 +1,17 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2015.2.164' +versionsuffix = '-GCC-4.9.2' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C, C++ and Fortran compilers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version, versionsuffix), + ('ifort', version, versionsuffix), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.2.164-GCC-4.9.2.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.2.164-GCC-4.9.2.eb new file mode 100644 index 0000000000..3c57e6d8fe --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.2.164-GCC-4.9.2.eb @@ -0,0 +1,24 @@ +name = 'ifort' +version = '2015.2.164' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_fcompxe_%(version)s.tgz'] + +gcc = 'GCC' +gccver = '4.9.2' +versionsuffix = '-%s-%s' % (gcc, gccver) + +dependencies = [(gcc, gccver)] + +dontcreateinstalldir = 'True' + +# license file +#import os +#license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") +license_file = '/import/bc2/soft/source/i/ifort/COM_L__FOR_RRB4-H33RVJNV.lic' + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-7.2.5-GCC-4.9.2.eb b/easybuild/easyconfigs/i/iimpi/iimpi-7.2.5-GCC-4.9.2.eb new file mode 100644 index 0000000000..62c0e1ff30 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-7.2.5-GCC-4.9.2.eb @@ -0,0 +1,21 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '7.2.5' +versionsuffix = '-GCC-4.9.2' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '2.164' +compver = '2015.%s' % suff + +dependencies = [ + ('icc', compver, versionsuffix), + ('ifort', compver, versionsuffix), + ('impi', '5.0.2.044', '', ('iccifort', '%s%s' % (compver, versionsuffix))), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.2.2.164-iimpi-7.2.5-GCC-4.9.2.eb b/easybuild/easyconfigs/i/imkl/imkl-11.2.2.164-iimpi-7.2.5-GCC-4.9.2.eb new file mode 100644 index 0000000000..aadf66c552 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.2.2.164-iimpi-7.2.5-GCC-4.9.2.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.2.2.164' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '7.2.5-GCC-4.9.2'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +interfaces = True + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.2.164-GCC-4.9.2.eb b/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.2.164-GCC-4.9.2.eb new file mode 100644 index 0000000000..a71dcd21b3 --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.2.164-GCC-4.9.2.eb @@ -0,0 +1,20 @@ +name = 'impi' +version = '5.0.2.044' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2015.2.164-GCC-4.9.2'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +#license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") +license_file = '/import/bc2/soft/source/i/impi/COM_L___LL96-5ZMJC2LJ.lic' + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/intel/intel-2015.02.eb b/easybuild/easyconfigs/i/intel/intel-2015.02.eb new file mode 100644 index 0000000000..dc1797ac5a --- /dev/null +++ b/easybuild/easyconfigs/i/intel/intel-2015.02.eb @@ -0,0 +1,21 @@ +easyblock = "Toolchain" + +name = 'intel' +version = '2015.02' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2015.2.164' +gccsuff = '-GCC-4.9.2' + +dependencies = [ + ('icc', compver, gccsuff), + ('ifort', compver, gccsuff), + ('impi', '5.0.2.044', '', ('iccifort', '%s%s' % (compver, gccsuff))), + ('imkl', '11.2.2.164', '', ('iimpi', '7.2.5%s' % gccsuff)), +] + +moduleclass = 'toolchain' -- GitLab From e583665ad10131df3c7543bbffaa9108913edc22 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 10 Feb 2015 17:52:07 +0100 Subject: [PATCH 0606/1217] add Lmod/5.9 for GCC/4.8.[2,4] Signed-off-by: Fotis Georgatos --- .../easyconfigs/l/Lmod/Lmod-5.9-GCC-4.8.2.eb | 27 +++++++++++++++++++ .../easyconfigs/l/Lmod/Lmod-5.9-GCC-4.8.4.eb | 27 +++++++++++++++++++ .../l/Lua/Lua-5.1.4-8-GCC-4.8.4.eb | 24 +++++++++++++++++ .../n/ncurses/ncurses-5.9-GCC-4.8.4.eb | 15 +++++++++++ 4 files changed, 93 insertions(+) create mode 100644 easybuild/easyconfigs/l/Lmod/Lmod-5.9-GCC-4.8.2.eb create mode 100644 easybuild/easyconfigs/l/Lmod/Lmod-5.9-GCC-4.8.4.eb create mode 100644 easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.4.eb create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.4.eb diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.9-GCC-4.8.2.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.9-GCC-4.8.2.eb new file mode 100644 index 0000000000..e86305d642 --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.9-GCC-4.8.2.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = "Lmod" +version = "5.9" + +homepage = "http://sourceforge.net/projects/lmod/" +description = """Lmod is a Lua based module system. Modules allow for dynamic modification + of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod + for a complete description. Lmod is a new implementation that easily handles the MODULEPATH + Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly.""" + +toolchain = {'name': 'GCC', 'version': '4.8.2'} + +sources = [SOURCE_TAR_BZ2] +source_urls = [ + 'http://sourceforge.net/projects/lmod/files/', + 'http://sourceforge.net/projects/lmod/files/Testing' +] + +dependencies = [("Lua", "5.1.4-8")] + +sanity_check_paths = { + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], + 'dirs': [] +} + +moduleclass = "tools" diff --git a/easybuild/easyconfigs/l/Lmod/Lmod-5.9-GCC-4.8.4.eb b/easybuild/easyconfigs/l/Lmod/Lmod-5.9-GCC-4.8.4.eb new file mode 100644 index 0000000000..e44bacb20b --- /dev/null +++ b/easybuild/easyconfigs/l/Lmod/Lmod-5.9-GCC-4.8.4.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = "Lmod" +version = "5.9" + +homepage = "http://sourceforge.net/projects/lmod/" +description = """Lmod is a Lua based module system. Modules allow for dynamic modification + of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod + for a complete description. Lmod is a new implementation that easily handles the MODULEPATH + Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +sources = [SOURCE_TAR_BZ2] +source_urls = [ + 'http://sourceforge.net/projects/lmod/files/', + 'http://sourceforge.net/projects/lmod/files/Testing' +] + +dependencies = [("Lua", "5.1.4-8")] + +sanity_check_paths = { + 'files': ["lmod/%(version)s/libexec/lmod", "lmod/%(version)s/init/profile"], + 'dirs': [] +} + +moduleclass = "tools" diff --git a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.4.eb b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.4.eb new file mode 100644 index 0000000000..a407b62d7d --- /dev/null +++ b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.4.eb @@ -0,0 +1,24 @@ +name = "Lua" +version = "5.1.4-8" + +homepage = "http://www.lua.org/" +description = """Lua is a powerful, fast, lightweight, embeddable scripting language. + Lua combines simple procedural syntax with powerful data description constructs based + on associative arrays and extensible semantics. Lua is dynamically typed, + runs by interpreting bytecode for a register-based virtual machine, + and has automatic memory management with incremental garbage collection, + making it ideal for configuration, scripting, and rapid prototyping.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +sources = ['lua-%s.tar.gz' % version.replace('-', '.')] +source_urls = ['http://sourceforge.net/projects/lmod/files/'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/lua"], + 'dirs': [] +} + +moduleclass = "lang" diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.4.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.4.eb new file mode 100644 index 0000000000..6031386c0f --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.4.eb @@ -0,0 +1,15 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' -- GitLab From cf6d219ae347d47ab39f99d230de9ba153347fdf Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 10 Feb 2015 20:54:17 +0100 Subject: [PATCH 0607/1217] oh yes, add easyblock = 'ConfigureMake' for everybody Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.4.eb | 2 ++ easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.4.eb | 2 ++ 2 files changed, 4 insertions(+) diff --git a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.4.eb b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.4.eb index a407b62d7d..a84e128f02 100644 --- a/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/l/Lua/Lua-5.1.4-8-GCC-4.8.4.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = "Lua" version = "5.1.4-8" diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.4.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.4.eb index 6031386c0f..946a1c5338 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-GCC-4.8.4.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'ncurses' version = '5.9' -- GitLab From c200b00a7a58a72ab8ce922fb518efa8600a20f9 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Tue, 10 Feb 2015 21:25:35 +0100 Subject: [PATCH 0608/1217] also edit text files in favor of Lmod/5.9.5-GCC-4.8.4 Signed-off-by: Fotis Georgatos --- easybuild/easyconfigs/l/Lmod/README.rst | 10 +++++----- easybuild/easyconfigs/l/Lmod/sourceme | 10 +++++----- 2 files changed, 10 insertions(+), 10 deletions(-) diff --git a/easybuild/easyconfigs/l/Lmod/README.rst b/easybuild/easyconfigs/l/Lmod/README.rst index d3231b25ad..3c0886718f 100644 --- a/easybuild/easyconfigs/l/Lmod/README.rst +++ b/easybuild/easyconfigs/l/Lmod/README.rst @@ -10,14 +10,14 @@ Howto Assuming you have successfully used the bootstrap procedure of EasyBuild, you should be able to initiate a recursive build of the following bits:: - EASYBUILD_OPTARCH= time eb Lmod-5.8.5-GCC-4.8.2.eb -r + EASYBUILD_OPTARCH= time eb Lmod-5.9-GCC-4.8.4.eb -r which is going to build the following modules/easyconfigs:: - g/GCC/GCC-4.8.2.eb ## if this breaks use: --try-amend=parallel=1 - n/ncurses/ncurses-5.9-GCC-4.8.2.eb ## On MacOSX, this should pick a special patch - l/Lua/Lua-5.1.4-8-GCC-4.8.2.eb ## Lmod is written in Lua, which needs ncurses - l/Lmod/Lmod-5.8.5-GCC-4.8.2.eb ## Lmod should be built with -r, to build the above + g/GCC/GCC-4.8.4.eb ## if this breaks use: --try-amend=parallel=1 + n/ncurses/ncurses-5.9-GCC-4.8.4.eb ## On MacOSX, this should pick a special patch + l/Lua/Lua-5.1.4-8-GCC-4.8.4.eb ## Lmod is written in Lua, which needs ncurses + l/Lmod/Lmod-5.9-GCC-4.8.4.eb ## Lmod should be built with -r, to build the above This operation is expected to be the needed substrate to launch you towards Lmod; Lmod facility gets activated with the `sourceme` script available next to this file:: diff --git a/easybuild/easyconfigs/l/Lmod/sourceme b/easybuild/easyconfigs/l/Lmod/sourceme index cf5748704a..804f0ede35 100644 --- a/easybuild/easyconfigs/l/Lmod/sourceme +++ b/easybuild/easyconfigs/l/Lmod/sourceme @@ -2,17 +2,17 @@ # # This script helps to implement policy: https://hpcbios.readthedocs.org/en/latest/HPCBIOS_06-17.html # -# prereq: Lmod/5.8.5-GCC-4.8.2 -# prereq: Lua/5.1.4-8-GCC-4.8.2 +# prereq: Lmod/5.9.5-GCC-4.8.4 +# prereq: Lua/5.1.4-8-GCC-4.8.4 # -# build prereqs, take a note: GCC/4.8.2 & ncurses/5.9 +# build prereqs, take a note: GCC/4.8.4 & ncurses/5.9 ## Remember to change the following, as per individual case EASYBUILD_PREFIX=${EASYBUILD_PREFIX:-"$HOME/.local/easybuild"} -TOOLCHAIN="GCC-4.8.2" +TOOLCHAIN="GCC-4.8.4" VERSIONLUA="5.1.4-8" -VERSIONLMOD="5.8.5" +VERSIONLMOD="5.9" PREFIXLUA=$EASYBUILD_PREFIX/software/Lua/$VERSIONLUA-$TOOLCHAIN PREFIXLMOD=$EASYBUILD_PREFIX/software/Lmod/$VERSIONLMOD-$TOOLCHAIN/lmod/$VERSIONLMOD -- GitLab From 979a532426bc3b0cad5842e66ce1a2ef09929a32 Mon Sep 17 00:00:00 2001 From: Bart Verleye Date: Wed, 11 Feb 2015 10:27:33 +1300 Subject: [PATCH 0609/1217] updating python file --- .../p/Python/Python-2.7.8-goolf-1.5.14.eb | 113 ++++-------------- 1 file changed, 24 insertions(+), 89 deletions(-) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb index 33fd2ef2d0..df184b1c3e 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb @@ -3,107 +3,56 @@ version = '2.7.8' homepage = 'http://python.org/' description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + toolchain = {'name': 'goolf', 'version': '1.5.14'} toolchainopts = {'pic': True, 'opt': True, 'optarch': True} -numpyversion = '1.8.2' +numpyversion = '1.8.1' scipyversion = '0.14.0' source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] sources = [SOURCE_TGZ] +# libffi build in python is still broken, see http://bugs.python.org/issue4130 +patches = ['python-2.7_libffi-include-xmmintrin.patch'] + +# python needs bzip2 to build the bz2 package dependencies = [ - ('bzip2', '1.0.6'), # for bz2 package -# ('zlib', '1.2.8'), # use version selected by libxslt below - ('libreadline', '6.2'), + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), ('ncurses', '5.9'), - ('LLVM', '3.2'), # for Numba - ('SQLite', '3.8.4.3'), # for IPython and general use - ('libxslt', '1.1.28'), # for lxml. brings in libxml2 and zlib dependencies. - ('CUDA', '6.0.37','', True), # for pycuda, duh. -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons - - ('libjpeg-turbo','1.3.0'), # For matplotlib and Pillow - ('libpng','1.6.10'), # For matplotlib and Pillow - ('freetype', '2.5.3'), # For matplotlib and Pillow - +# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev')] + # order is important! +# Version updated 08/JULY/2014 exts_list = [ - ('setuptools', '5.7', { + ('setuptools', '5.4.1', { 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], }), - ('ipython', '2.2.0', { - 'modulename': 'IPython', - 'source_urls': ['http://pypi.python.org/packages/source/i/ipython/'], - }), ('pip', '1.5.6', { 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], }), - ('virtualenv', '1.11.6', { - 'source_urls': ['http://pypi.python.org/packages/source/v/virtualenv/'], - }), ('nose', '1.3.3', { 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], }), - ('line_profiler', '1.0b3', { - 'source_urls': ['http://pypi.python.org/packages/source/l/line_profiler/'], - }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], 'patches': [ - 'numpy-%s_distutils_multiple-lib-dirs.patch' % ('1.8.1' if numpyversion.startswith('1.8') else numpyversion), + 'numpy-%s-mkl.patch' % numpyversion, ], }), ('scipy', scipyversion, { 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), - ('Cython', '0.20.2', { - 'source_urls': ['http://www.cython.org/release/'], - }), - - - ('networkx', '1.9', { - 'source_urls': ['https://pypi.python.org/packages/source/n/networkx/'], - 'modulename': 'Bio', - }), - ('biopython', '1.64', { - 'source_urls': ['https://pypi.python.org/packages/source/b/biopython/'], - 'modulename': 'Bio', - }), - - ('Pillow', '2.5.3', { - 'source_tmpl': SOURCE_ZIP, #'%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/P/Pillow/'], - 'modulename': 'PIL', - }), - ('matplotlib', '1.3.1', { - 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib/'], + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], }), - ('skimage', '0.10.1', { - 'source_tmpl': 'scikit-image-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/s/scikit-image/'], - }), - - ('lxml', '3.3.5', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lxml/'], - }), - ('pycuda', '2014.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pycuda/'], - }), - #('pyopencl', '2014.1', { - # 'source_urls': ['https://pypi.python.org/packages/source/p/puopencl/'], - #}), - ('pysam', '0.8.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pysam/'], - }), - ('pytz', '2014.4', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pytz/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -114,12 +63,15 @@ exts_list = [ ('lockfile', '0.9.1', { 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], }), + ('Cython', '0.20.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.1', { - 'source_urls': ['http://pypi.python.org/packages/source/d/deap/'], + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], }), ('decorator', '3.4.0', { 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], @@ -135,26 +87,9 @@ exts_list = [ ('paramiko', '1.14.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), - ('llvmpy', '0.12.7', { -# 'source_urls': ['https://pypi.python.org/packages/source/l/llvmpy/'], - 'source_urls': ['https://github.com/llvmpy/llvmpy/archive/'], # since pypi tarball is incomplete - 'source_tmpl': '%(version)s.zip', - }), - ('numba', '0.13.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/numba/'], - }), - ('numexpr', '2.4', { - 'source_urls': ['https://pypi.python.org/packages/source/n/numexpr/'], - }), - ('Bottleneck', '0.8.0', { - 'source_urls': ['https://pypi.python.org/packages/source/B/Bottleneck/'], + ('pyparsing', '2.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], }), - ('pandas', '0.14.1', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pandas/'], - }), - ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' -- GitLab From 822c5ff12504e3177e9aa8706e42eb8c38f2a9ac Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Wed, 11 Feb 2015 02:20:03 +0100 Subject: [PATCH 0610/1217] add comment for source as requested Signed-off-by: Fotis Georgatos --- .../easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb b/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb index 1c4c98b0f0..ab71f3a9fb 100644 --- a/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb +++ b/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb @@ -21,6 +21,7 @@ description = """The rCUDA Framework enables the concurrent usage of CUDA-compat toolchain = {'version': 'dummy', 'name': 'dummy'} +# Obtain source via http://www.rcuda.net/index.php/software-request-form.html sources = ['rCUDA_%(version)s%(versionsuffix)s.tar.gz'] sanity_check_paths = { -- GitLab From e839997611c0d2e83efe55ce1c6f077b6acc66d1 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Wed, 11 Feb 2015 14:27:48 +0100 Subject: [PATCH 0611/1217] add rCUDA_5.0_linux_64_scientificLinux6.eb Signed-off-by: Fotis Georgatos --- .../rCUDA_5.0_linux_64_scientificLinux6.eb | 32 +++++++++++++++++++ 1 file changed, 32 insertions(+) create mode 100644 easybuild/easyconfigs/r/rCUDA/rCUDA_5.0_linux_64_scientificLinux6.eb diff --git a/easybuild/easyconfigs/r/rCUDA/rCUDA_5.0_linux_64_scientificLinux6.eb b/easybuild/easyconfigs/r/rCUDA/rCUDA_5.0_linux_64_scientificLinux6.eb new file mode 100644 index 0000000000..5169448939 --- /dev/null +++ b/easybuild/easyconfigs/r/rCUDA/rCUDA_5.0_linux_64_scientificLinux6.eb @@ -0,0 +1,32 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-99.html +## + +easyblock = "Tarball" + +name = "rCUDA" +version = "5.0" +versionsuffix = "_linux_64_scientificLinux6" + +homepage = 'http://www.rcuda.net/' +description = """The rCUDA Framework enables the concurrent usage of CUDA-compatible devices remotely.""" + +toolchain = {'version': 'dummy', 'name': 'dummy'} + +sources = ['rCUDA_%(version)s%(versionsuffix)s.tar.gz'] + +sanity_check_paths = { + 'files': ["framework/common/rCUDAcommIB.so", "framework/common/rCUDAcommTCP.so", + "framework/rCUDAl/libcudart.so", "framework/rCUDAd/getGPUNo"], + 'dirs': [] +} + +moduleclass = 'system' -- GitLab From 5eaf52feaa38920470b26a5fd10cc83855c67038 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Wed, 11 Feb 2015 14:28:54 +0100 Subject: [PATCH 0612/1217] header fix for rCUDA/4.0.1 Signed-off-by: Fotis Georgatos --- .../easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb b/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb index 1c4c98b0f0..0bf2a17ba2 100644 --- a/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb +++ b/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb @@ -1,8 +1,8 @@ ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB -# Authors:: Fotis Georgatos , +# Copyright:: Copyright 2012-2014 NTUA +# Authors:: Fotis Georgatos # License:: MIT/GPL # $Id$ # -- GitLab From 4397a59636475ae58f72738fa6b89f214ae97cbe Mon Sep 17 00:00:00 2001 From: Danilo Guerrera Date: Wed, 11 Feb 2015 14:32:36 +0100 Subject: [PATCH 0613/1217] support for MVAPICH2 vs 2.0.1 and a toolchain with GCC 4.8.4 --- .../b/Bison/Bison-2.7-GCC-4.8.4.eb | 22 +++++++++++++++++++ .../g/gmvapich2/gmvapich2-1.7.20.eb | 22 +++++++++++++++++++ .../m/MVAPICH2/MVAPICH2-2.0.1-GCC-4.8.4.eb | 17 ++++++++++++++ 3 files changed, 61 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.8.4.eb create mode 100644 easybuild/easyconfigs/g/gmvapich2/gmvapich2-1.7.20.eb create mode 100644 easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-2.0.1-GCC-4.8.4.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.8.4.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.8.4.eb new file mode 100644 index 0000000000..308a68920e --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-GCC-4.8.4.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '2.7' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/g/gmvapich2/gmvapich2-1.7.20.eb b/easybuild/easyconfigs/g/gmvapich2/gmvapich2-1.7.20.eb new file mode 100644 index 0000000000..22b6c5bfc3 --- /dev/null +++ b/easybuild/easyconfigs/g/gmvapich2/gmvapich2-1.7.20.eb @@ -0,0 +1,22 @@ +easyblock = "Toolchain" + +name = 'gmvapich2' +version = '1.7.20' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including MVAPICH2 for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compname = 'GCC' +compver = '4.8.4' +comp = (compname, compver) + +# compiler toolchain dependencies +dependencies = [ + comp, + ('MVAPICH2', '2.0.1', '', comp), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-2.0.1-GCC-4.8.4.eb b/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-2.0.1-GCC-4.8.4.eb new file mode 100644 index 0000000000..bf2762a1a1 --- /dev/null +++ b/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-2.0.1-GCC-4.8.4.eb @@ -0,0 +1,17 @@ +name = 'MVAPICH2' +version = '2.0.1' + +homepage = 'http://mvapich.cse.ohio-state.edu/overview/mvapich2/' +description = "This is an MPI 3.0 implementation. It is based on MPICH2 and MVICH." + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +source_urls = ['http://mvapich.cse.ohio-state.edu/download/mvapich/mv2/'] +sources = [SOURCELOWER_TAR_GZ] + +# Let's store the checksum in order to be sure it doesn't suddenly change +checksums = ['77bba29442f81e196155e87869cdceda'] + +builddependencies = [('Bison', '2.7')] + +moduleclass = 'mpi' -- GitLab From 2143edd9f67667536dd6c3ad4ebfd9255dad3761 Mon Sep 17 00:00:00 2001 From: Danilo Guerrera Date: Wed, 11 Feb 2015 14:38:24 +0100 Subject: [PATCH 0614/1217] new GMVOLF toolchain, based on GCC 4.8.4, MVAPICH2 v2.0.1 --- .../f/FFTW/FFTW-3.3.4-gmvapich2-1.7.20.eb | 34 +++++++++++++++++ .../easyconfigs/g/gmvolf/gmvolf-1.7.20.eb | 37 +++++++++++++++++++ ...ch2-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb | 25 +++++++++++++ 3 files changed, 96 insertions(+) create mode 100644 easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.20.eb create mode 100644 easybuild/easyconfigs/g/gmvolf/gmvolf-1.7.20.eb create mode 100644 easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.20.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.20.eb new file mode 100644 index 0000000000..c0222caee5 --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.20.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'gmvapich2', 'version': '1.7.20'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-quad-precision", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/gmvolf/gmvolf-1.7.20.eb b/easybuild/easyconfigs/g/gmvolf/gmvolf-1.7.20.eb new file mode 100644 index 0000000000..5c496f8a67 --- /dev/null +++ b/easybuild/easyconfigs/g/gmvolf/gmvolf-1.7.20.eb @@ -0,0 +1,37 @@ +easyblock = "Toolchain" + +name = 'gmvolf' +version = '1.7.20' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, including + MVAPICH2 for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp_name = 'GCC' +comp_version = '4.8.4' +comp = (comp_name, comp_version) + +blaslib = 'OpenBLAS' +blasver = '0.2.13' +blas = '%s-%s' % (blaslib, blasver) +blassuff = '-LAPACK-3.5.0' + +# toolchain used to build gmvolf dependencies +comp_mpi_tc_name = 'gmvapich2' +comp_mpi_tc_ver = "%s" % version +comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) + +# compiler toolchain depencies +# we need GCC and MVAPICH2 as explicit dependencies instead of gmvapivh2 toolchain +# because of toolchain preperation functions +dependencies = [ + ('GCC', '4.8.4'), + ('MVAPICH2', '2.0.1', '', comp), + (blaslib, blasver, blassuff, comp), + ('FFTW', '3.3.4', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb new file mode 100644 index 0000000000..4792a692ea --- /dev/null +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb @@ -0,0 +1,25 @@ +name = 'ScaLAPACK' +version = '2.0.2' + +homepage = 'http://www.netlib.org/scalapack/' +description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines + redesigned for distributed memory MIMD parallel computers.""" + +toolchain = {'name': 'gmvapich2', 'version': '1.7.20'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = [SOURCELOWER_TGZ] + +blaslib = 'OpenBLAS' +blasver = '0.2.13' +blassuff = '-LAPACK-3.5.0' + +versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) + +dependencies = [(blaslib, blasver, blassuff, ('GCC', '4.8.4'))] + +## parallel build tends to fail, so disabling it +parallel = 1 + +moduleclass = 'numlib' -- GitLab From 89a6a9367194fa2224250b503114a0caa657d573 Mon Sep 17 00:00:00 2001 From: Danilo Guerrera Date: Wed, 11 Feb 2015 14:40:01 +0100 Subject: [PATCH 0615/1217] HPL v2.1 built on top of GMVOLF 1.7.20 toolchain --- .../easyconfigs/h/HPL/HPL-2.1-gmvolf-1.7.20.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-gmvolf-1.7.20.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-gmvolf-1.7.20.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-gmvolf-1.7.20.eb new file mode 100644 index 0000000000..dda08f35b9 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-gmvolf-1.7.20.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'gmvolf', 'version': '1.7.20'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' -- GitLab From 69ccaa4cdd228049b2dc9d6080f382fac864d9c5 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Lopez Date: Thu, 12 Feb 2015 09:52:05 +0100 Subject: [PATCH 0616/1217] removed site specific license path --- easybuild/easyconfigs/i/icc/icc-2015.2.164-GCC-4.9.2.eb | 5 ++--- easybuild/easyconfigs/i/ifort/ifort-2015.2.164-GCC-4.9.2.eb | 5 ++--- 2 files changed, 4 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/i/icc/icc-2015.2.164-GCC-4.9.2.eb b/easybuild/easyconfigs/i/icc/icc-2015.2.164-GCC-4.9.2.eb index 64131e9b0c..edbddbc36d 100644 --- a/easybuild/easyconfigs/i/icc/icc-2015.2.164-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/icc/icc-2015.2.164-GCC-4.9.2.eb @@ -17,9 +17,8 @@ dependencies = [(gcc, gccver)] dontcreateinstalldir = 'True' # license file -#import os -#license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") -license_file = '/import/bc2/soft/source/i/icc/COM_L__CPP_RSCN-FRFDSRTL.lic' +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.2.164-GCC-4.9.2.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.2.164-GCC-4.9.2.eb index 3c57e6d8fe..4f376249d8 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2015.2.164-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.2.164-GCC-4.9.2.eb @@ -17,8 +17,7 @@ dependencies = [(gcc, gccver)] dontcreateinstalldir = 'True' # license file -#import os -#license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") -license_file = '/import/bc2/soft/source/i/ifort/COM_L__FOR_RRB4-H33RVJNV.lic' +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") moduleclass = 'compiler' -- GitLab From 75703b90c024a99bab19e620630ef64119196a99 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Lopez Date: Thu, 12 Feb 2015 09:53:46 +0100 Subject: [PATCH 0617/1217] added HPL easyconfig for intel-2015.02 toolchain --- .../easyconfigs/h/HPL/HPL-2.1-intel-2015.02.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015.02.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015.02.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015.02.eb new file mode 100644 index 0000000000..7597cf43f8 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2015.02.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'intel', 'version': '2015.02'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' -- GitLab From e9db7b144c938f08209941e414319263be21f872 Mon Sep 17 00:00:00 2001 From: pescobar Date: Thu, 12 Feb 2015 10:08:27 +0100 Subject: [PATCH 0618/1217] added java 1.7.0_75 --- easybuild/easyconfigs/j/Java/Java-1.7.0_75.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/j/Java/Java-1.7.0_75.eb diff --git a/easybuild/easyconfigs/j/Java/Java-1.7.0_75.eb b/easybuild/easyconfigs/j/Java/Java-1.7.0_75.eb new file mode 100644 index 0000000000..72fde0f6bc --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.7.0_75.eb @@ -0,0 +1,15 @@ +name = 'Java' +version = '1.7.0_75' + +homepage = 'http://java.com/' +description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] + +moduleclass = 'lang' -- GitLab From ad1597209504a1856f3df960c425537dd415bb7d Mon Sep 17 00:00:00 2001 From: pescobar Date: Thu, 12 Feb 2015 10:19:45 +0100 Subject: [PATCH 0619/1217] updated picard to latest java --- easybuild/easyconfigs/p/picard/picard-1.119.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/picard/picard-1.119.eb b/easybuild/easyconfigs/p/picard/picard-1.119.eb index cb362554cd..b6b8db08ef 100644 --- a/easybuild/easyconfigs/p/picard/picard-1.119.eb +++ b/easybuild/easyconfigs/p/picard/picard-1.119.eb @@ -9,6 +9,6 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [SOURCEFORGE_SOURCE] sources = ['%(name)s-tools-%(version)s.zip'] -dependencies = [('Java', '1.7.0_10')] +dependencies = [('Java', '1.7.0_75')] moduleclass = 'bio' -- GitLab From 949caa1d64850968fbb4ec9f450f382bd7df0a6b Mon Sep 17 00:00:00 2001 From: Pablo Escobar Lopez Date: Thu, 12 Feb 2015 10:35:44 +0100 Subject: [PATCH 0620/1217] updated to latest intel-mpi --- easybuild/easyconfigs/i/iimpi/iimpi-7.2.5-GCC-4.9.2.eb | 2 +- ....2.eb => impi-5.0.3.048-iccifort-2015.2.164-GCC-4.9.2.eb} | 5 ++--- easybuild/easyconfigs/i/intel/intel-2015.02.eb | 2 +- 3 files changed, 4 insertions(+), 5 deletions(-) rename easybuild/easyconfigs/i/impi/{impi-5.0.2.044-iccifort-2015.2.164-GCC-4.9.2.eb => impi-5.0.3.048-iccifort-2015.2.164-GCC-4.9.2.eb} (74%) diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-7.2.5-GCC-4.9.2.eb b/easybuild/easyconfigs/i/iimpi/iimpi-7.2.5-GCC-4.9.2.eb index 62c0e1ff30..2c890a5549 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-7.2.5-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-7.2.5-GCC-4.9.2.eb @@ -15,7 +15,7 @@ compver = '2015.%s' % suff dependencies = [ ('icc', compver, versionsuffix), ('ifort', compver, versionsuffix), - ('impi', '5.0.2.044', '', ('iccifort', '%s%s' % (compver, versionsuffix))), + ('impi', '5.0.3.048', '', ('iccifort', '%s%s' % (compver, versionsuffix))), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.2.164-GCC-4.9.2.eb b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.2.164-GCC-4.9.2.eb similarity index 74% rename from easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.2.164-GCC-4.9.2.eb rename to easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.2.164-GCC-4.9.2.eb index a71dcd21b3..d23a27639e 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.2.164-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.2.164-GCC-4.9.2.eb @@ -1,5 +1,5 @@ name = 'impi' -version = '5.0.2.044' +version = '5.0.3.048' homepage = 'http://software.intel.com/en-us/intel-mpi-library/' description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message @@ -14,7 +14,6 @@ dontcreateinstalldir = 'True' # license file import os -#license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") -license_file = '/import/bc2/soft/source/i/impi/COM_L___LL96-5ZMJC2LJ.lic' +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/intel/intel-2015.02.eb b/easybuild/easyconfigs/i/intel/intel-2015.02.eb index dc1797ac5a..ab8507944b 100644 --- a/easybuild/easyconfigs/i/intel/intel-2015.02.eb +++ b/easybuild/easyconfigs/i/intel/intel-2015.02.eb @@ -14,7 +14,7 @@ gccsuff = '-GCC-4.9.2' dependencies = [ ('icc', compver, gccsuff), ('ifort', compver, gccsuff), - ('impi', '5.0.2.044', '', ('iccifort', '%s%s' % (compver, gccsuff))), + ('impi', '5.0.3.048', '', ('iccifort', '%s%s' % (compver, gccsuff))), ('imkl', '11.2.2.164', '', ('iimpi', '7.2.5%s' % gccsuff)), ] -- GitLab From 0f558843477fc0bea296063453ab266cf65e11c2 Mon Sep 17 00:00:00 2001 From: pescobar Date: Thu, 12 Feb 2015 11:22:32 +0100 Subject: [PATCH 0621/1217] style fixes --- easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb | 2 +- easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb index 53d9ac4058..84a819596b 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb @@ -22,7 +22,7 @@ patches = ['EMBOSS_disable-embossupdate.patch'] dependencies = [ ('libharu', '2.2.0'), - ('Java','1.7.0_75', '', True), + ('Java', '1.7.0_75', '', True), ] configopts = " --with-hpdf=$EBROOTLIBHARU " diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb index 76687da80e..a00dce23ff 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb @@ -22,7 +22,7 @@ patches = ['EMBOSS_disable-embossupdate.patch'] dependencies = [ ('libharu', '2.2.0'), - ('Java','1.7.0_75', '', True), + ('Java', '1.7.0_75', '', True), ] configopts = " --with-hpdf=$EBROOTLIBHARU " diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb index f15ea8b602..15878afe16 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb @@ -22,7 +22,7 @@ patches = ['EMBOSS_disable-embossupdate.patch'] dependencies = [ ('libharu', '2.2.0'), - ('Java','1.7.0_75', '', True), + ('Java', '1.7.0_75', '', True), ] configopts = " --with-hpdf=$EBROOTLIBHARU " -- GitLab From 22a27248154007a4f6d1bbad4f2a16dc442ca4c7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 12 Feb 2015 11:49:59 +0100 Subject: [PATCH 0622/1217] rename GenomeAnalysisTk easyconfigs to GATK --- .../GenomeAnalysisTK-1.0.5083.eb => GATK/GATK-1.0.5083.eb} | 0 .../GATK-2.7-4.eb}/GenomeAnalysisTK-2.7-4.eb | 0 2 files changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/g/{GenomeAnalysisTK/GenomeAnalysisTK-1.0.5083.eb => GATK/GATK-1.0.5083.eb} (100%) rename easybuild/easyconfigs/g/{GenomeAnalysisTK => GATK/GATK-2.7-4.eb}/GenomeAnalysisTK-2.7-4.eb (100%) diff --git a/easybuild/easyconfigs/g/GenomeAnalysisTK/GenomeAnalysisTK-1.0.5083.eb b/easybuild/easyconfigs/g/GATK/GATK-1.0.5083.eb similarity index 100% rename from easybuild/easyconfigs/g/GenomeAnalysisTK/GenomeAnalysisTK-1.0.5083.eb rename to easybuild/easyconfigs/g/GATK/GATK-1.0.5083.eb diff --git a/easybuild/easyconfigs/g/GenomeAnalysisTK/GenomeAnalysisTK-2.7-4.eb b/easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb/GenomeAnalysisTK-2.7-4.eb similarity index 100% rename from easybuild/easyconfigs/g/GenomeAnalysisTK/GenomeAnalysisTK-2.7-4.eb rename to easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb/GenomeAnalysisTK-2.7-4.eb -- GitLab From bec2794c6b7c4252ed00c270435e3b7a57eb0454 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 12 Feb 2015 11:59:00 +0100 Subject: [PATCH 0623/1217] fix rename screwup --- .../{GATK-2.7-4.eb/GenomeAnalysisTK-2.7-4.eb => GATK-2.7-4.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/g/GATK/{GATK-2.7-4.eb/GenomeAnalysisTK-2.7-4.eb => GATK-2.7-4.eb} (100%) diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb/GenomeAnalysisTK-2.7-4.eb b/easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb similarity index 100% rename from easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb/GenomeAnalysisTK-2.7-4.eb rename to easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb -- GitLab From 332179371685a2dd1babbbc91f6e39d83e349e4e Mon Sep 17 00:00:00 2001 From: Adam Mazur Date: Thu, 12 Feb 2015 12:03:46 +0100 Subject: [PATCH 0624/1217] easyconfig for Coot --- easybuild/easyconfigs/c/Coot/Coot-0.8.1.eb | 27 ++++++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/c/Coot/Coot-0.8.1.eb diff --git a/easybuild/easyconfigs/c/Coot/Coot-0.8.1.eb b/easybuild/easyconfigs/c/Coot/Coot-0.8.1.eb new file mode 100644 index 0000000000..54e36207e0 --- /dev/null +++ b/easybuild/easyconfigs/c/Coot/Coot-0.8.1.eb @@ -0,0 +1,27 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Adam Mazur +# Research IT +# Biozentrum - University of Basel + +easyblock = "Tarball" + +name = 'Coot' +version = '0.8.1' +versionsuffix = '-binary-Linux-x86_64-rhel-6-python-gtk2' + +homepage = 'http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot' +description = """Coot is for macromolecular model building, model completion +and validation, particularly suitable for protein modelling using X-ray data.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/binaries/release'] +sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz'] + +sanity_check_paths = { + 'files': ["bin/coot" ], + 'dirs': ["bin"] +} + +moduleclass = 'bio' + -- GitLab From a002266ec091a8c286958521cf465ac1406280f2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 12 Feb 2015 12:09:50 +0100 Subject: [PATCH 0625/1217] revert back to v1.7.0_10 for compatibility with HPCBIOS easyconfigs --- easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb | 2 +- easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb index 84a819596b..ae4e3793e6 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb @@ -22,7 +22,7 @@ patches = ['EMBOSS_disable-embossupdate.patch'] dependencies = [ ('libharu', '2.2.0'), - ('Java', '1.7.0_75', '', True), + ('Java', '1.7.0_10', '', True), ] configopts = " --with-hpdf=$EBROOTLIBHARU " diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb index a00dce23ff..f3660e8c90 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb @@ -22,7 +22,7 @@ patches = ['EMBOSS_disable-embossupdate.patch'] dependencies = [ ('libharu', '2.2.0'), - ('Java', '1.7.0_75', '', True), + ('Java', '1.7.0_10', '', True), ] configopts = " --with-hpdf=$EBROOTLIBHARU " diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb index 15878afe16..f34568c037 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb @@ -22,7 +22,7 @@ patches = ['EMBOSS_disable-embossupdate.patch'] dependencies = [ ('libharu', '2.2.0'), - ('Java', '1.7.0_75', '', True), + ('Java', '1.7.0_10', '', True), ] configopts = " --with-hpdf=$EBROOTLIBHARU " -- GitLab From a25e81ed2166db04b225cd934dff9b9e39e3762e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 12 Feb 2015 12:20:35 +0100 Subject: [PATCH 0626/1217] fix name/sources in renamed GATK easyconfigs --- easybuild/easyconfigs/g/GATK/GATK-1.0.5083.eb | 6 +++--- easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb | 6 +++--- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/g/GATK/GATK-1.0.5083.eb b/easybuild/easyconfigs/g/GATK/GATK-1.0.5083.eb index b0b8f69c3e..bf84cfb541 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-1.0.5083.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-1.0.5083.eb @@ -1,4 +1,4 @@ -name = 'GenomeAnalysisTK' +name = 'GATK' version = '1.0.5083' homepage = 'http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit' @@ -9,8 +9,8 @@ description = """The GATK is a structured software library that makes writing ef toolchain = {'name': 'dummy', 'version': 'dummy'} -# download via http://www.broadinstitute.org/gatk/download (requires registration) -sources = [SOURCE_TAR_BZ2] +# download manually from http://www.broadinstitute.org/gatk/download +sources = ['GenomeAnalysisTK-%(version)s.tar.bz2'] dependencies = [('Java', '1.7.0_10')] diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb b/easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb index 6f476f6eff..8d820b457c 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb @@ -1,4 +1,4 @@ -name = 'GenomeAnalysisTK' +name = 'GATK' version = '2.7-4' homepage = 'http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit' @@ -9,8 +9,8 @@ description = """The GATK is a structured software library that makes writing ef toolchain = {'name': 'dummy', 'version': 'dummy'} -# download via http://www.broadinstitute.org/gatk/download (requires registration) -sources = [SOURCE_TAR_BZ2] +# download manually from http://www.broadinstitute.org/gatk/download +sources = ['GenomeAnalysisTK-%(version)s.tar.bz2'] dependencies = [('Java', '1.7.0_10')] -- GitLab From 37e080af91f24a43f3c5b46983bab8162a69a027 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Thu, 12 Feb 2015 12:21:02 +0100 Subject: [PATCH 0627/1217] bugfix filename of MAFFT for ictce/5.3.0 Signed-off-by: Fotis Georgatos --- ...MAFFT-7.130-ictce-5.3.0-with-extensions.eb | 34 +++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-ictce-5.3.0-with-extensions.eb diff --git a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-ictce-5.3.0-with-extensions.eb b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-ictce-5.3.0-with-extensions.eb new file mode 100644 index 0000000000..6bf747d607 --- /dev/null +++ b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-ictce-5.3.0-with-extensions.eb @@ -0,0 +1,34 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'MAFFT' +version = '7.130' +versionsuffix = '-with-extensions' + +homepage = 'http://mafft.cbrc.jp/alignment/software/' +description = """MAFFT is a multiple sequence alignment program + for unix-like operating systems. It offers a range of multiple + alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), + FFT-NS-2 (fast; for alignment of <∼10,000 sequences), etc.""" + +toolchain = {'name': 'ictce', 'version': '5.3.0'} + +source_urls = [homepage] +sources = ['%(namelower)s-%(version)s%(versionsuffix)s-src.tgz'] + +skipsteps = ['configure'] +start_dir = 'core' +installopts = 'PREFIX=%(installdir)s' + +modextrapaths = {'MAFFT_BINARIES': 'libexec/mafft'} + +sanity_check_paths = { + 'files': ['bin/mafft'], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From 16e6b57e586555ca09b09a548343957365bb4534 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Thu, 12 Feb 2015 12:35:04 +0100 Subject: [PATCH 0628/1217] really bugfix this MAFFT Signed-off-by: Fotis Georgatos --- ...MAFFT-7.130-with-extensions-ictce-5.3.0.eb | 34 ------------------- 1 file changed, 34 deletions(-) delete mode 100644 easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-with-extensions-ictce-5.3.0.eb diff --git a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-with-extensions-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-with-extensions-ictce-5.3.0.eb deleted file mode 100644 index 6bf747d607..0000000000 --- a/easybuild/easyconfigs/m/MAFFT/MAFFT-7.130-with-extensions-ictce-5.3.0.eb +++ /dev/null @@ -1,34 +0,0 @@ -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# Author: Pablo Escobar Lopez -# Swiss Institute of Bioinformatics -# Biozentrum - University of Basel - -easyblock = 'ConfigureMake' - -name = 'MAFFT' -version = '7.130' -versionsuffix = '-with-extensions' - -homepage = 'http://mafft.cbrc.jp/alignment/software/' -description = """MAFFT is a multiple sequence alignment program - for unix-like operating systems. It offers a range of multiple - alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), - FFT-NS-2 (fast; for alignment of <∼10,000 sequences), etc.""" - -toolchain = {'name': 'ictce', 'version': '5.3.0'} - -source_urls = [homepage] -sources = ['%(namelower)s-%(version)s%(versionsuffix)s-src.tgz'] - -skipsteps = ['configure'] -start_dir = 'core' -installopts = 'PREFIX=%(installdir)s' - -modextrapaths = {'MAFFT_BINARIES': 'libexec/mafft'} - -sanity_check_paths = { - 'files': ['bin/mafft'], - 'dirs': [], -} - -moduleclass = 'bio' -- GitLab From ff0235fb00d9a2c7c4f86964feb66c9aec996658 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 12 Feb 2015 12:41:53 +0100 Subject: [PATCH 0629/1217] use Tarball easyblock for renamed GATK easyconfigs --- easybuild/easyconfigs/g/GATK/GATK-1.0.5083.eb | 9 +++++++++ easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb | 9 +++++++++ 2 files changed, 18 insertions(+) diff --git a/easybuild/easyconfigs/g/GATK/GATK-1.0.5083.eb b/easybuild/easyconfigs/g/GATK/GATK-1.0.5083.eb index bf84cfb541..ddd5712d6f 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-1.0.5083.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-1.0.5083.eb @@ -1,3 +1,5 @@ +easyblock = 'Tarball' + name = 'GATK' version = '1.0.5083' @@ -14,4 +16,11 @@ sources = ['GenomeAnalysisTK-%(version)s.tar.bz2'] dependencies = [('Java', '1.7.0_10')] +modloadmsg = """To execute GATK run: java -jar \\$EBROOTGATK/GenomeAnalysisTK.jar""" + +sanity_check_paths = { + 'files': ["GenomeAnalysisTK.jar"], + 'dirs': ["resources"], +} + moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb b/easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb index 8d820b457c..98e7df7db8 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb @@ -1,3 +1,5 @@ +easyblock = 'Tarball' + name = 'GATK' version = '2.7-4' @@ -14,4 +16,11 @@ sources = ['GenomeAnalysisTK-%(version)s.tar.bz2'] dependencies = [('Java', '1.7.0_10')] +modloadmsg = """To execute GATK run: java -jar \\$EBROOTGATK/GenomeAnalysisTK.jar""" + +sanity_check_paths = { + 'files': ["GenomeAnalysisTK.jar"], + 'dirs': ["resources"], +} + moduleclass = 'bio' -- GitLab From 9eaecd9c12622df49a0a556df6994f87eb7d221b Mon Sep 17 00:00:00 2001 From: Adam Mazur Date: Thu, 12 Feb 2015 12:42:08 +0100 Subject: [PATCH 0630/1217] renamed the easyconfig file name --- ....1.eb => Coot-0.8.1-binary-Linux-x86_64-rhel-6-python-gtk2.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/c/Coot/{Coot-0.8.1.eb => Coot-0.8.1-binary-Linux-x86_64-rhel-6-python-gtk2.eb} (100%) diff --git a/easybuild/easyconfigs/c/Coot/Coot-0.8.1.eb b/easybuild/easyconfigs/c/Coot/Coot-0.8.1-binary-Linux-x86_64-rhel-6-python-gtk2.eb similarity index 100% rename from easybuild/easyconfigs/c/Coot/Coot-0.8.1.eb rename to easybuild/easyconfigs/c/Coot/Coot-0.8.1-binary-Linux-x86_64-rhel-6-python-gtk2.eb -- GitLab From 792312016a7f7dece347a37e7add6cf00f133443 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Lopez Date: Thu, 12 Feb 2015 13:05:42 +0100 Subject: [PATCH 0631/1217] iomkl-2015.02 --- ...oc-1.10.0-iccifort-2015.2.164-GCC-4.9.2.eb | 20 +++++++++++ .../i/imkl/imkl-11.2.2.164-iompi-2015.02.eb | 21 +++++++++++ .../easyconfigs/i/iomkl/iomkl-2015.02.eb | 20 +++++++++++ .../easyconfigs/i/iompi/iompi-2015.02.eb | 20 +++++++++++ ...MPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb | 36 +++++++++++++++++++ 5 files changed, 117 insertions(+) create mode 100644 easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.2.164-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/i/imkl/imkl-11.2.2.164-iompi-2015.02.eb create mode 100644 easybuild/easyconfigs/i/iomkl/iomkl-2015.02.eb create mode 100644 easybuild/easyconfigs/i/iompi/iompi-2015.02.eb create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.2.164-GCC-4.9.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.2.164-GCC-4.9.2.eb new file mode 100644 index 0000000000..6a875c1d32 --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.2.164-GCC-4.9.2.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.10.0' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'iccifort', 'version': '2015.2.164-GCC-4.9.2'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'system' + diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.2.2.164-iompi-2015.02.eb b/easybuild/easyconfigs/i/imkl/imkl-11.2.2.164-iompi-2015.02.eb new file mode 100644 index 0000000000..82eec3eecb --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.2.2.164-iompi-2015.02.eb @@ -0,0 +1,21 @@ +name = 'imkl' +version = '11.2.2.164' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines +for science, engineering, and financial applications that require maximum performance. Core math functions include +BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iompi', 'version': '2015.02'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/iomkl/iomkl-2015.02.eb b/easybuild/easyconfigs/i/iomkl/iomkl-2015.02.eb new file mode 100644 index 0000000000..544ad6da2e --- /dev/null +++ b/easybuild/easyconfigs/i/iomkl/iomkl-2015.02.eb @@ -0,0 +1,20 @@ +easyblock = "Toolchain" + +name = 'iomkl' +version = '2015.02' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2015.2.164-GCC-4.9.2' + +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('OpenMPI', '1.8.4', '', ('iccifort', compver)), + ('imkl', '11.2.2.164', '', ('iompi', version)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iompi/iompi-2015.02.eb b/easybuild/easyconfigs/i/iompi/iompi-2015.02.eb new file mode 100644 index 0000000000..698ba1f804 --- /dev/null +++ b/easybuild/easyconfigs/i/iompi/iompi-2015.02.eb @@ -0,0 +1,20 @@ +easyblock = "Toolchain" + +name = 'iompi' +version = '2015.02' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Toolchain with Intel C, C++ and Fortran compilers, alongside OpenMPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2015.2.164-GCC-4.9.2' + +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('OpenMPI', '1.8.4', '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb new file mode 100644 index 0000000000..23433689d8 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.8.4' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'iccifort', 'version': '2015.2.164-GCC-4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += ' CC=icc FC=ifort CXX=icpc ' +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +dependencies = [('hwloc', '1.10.0')] + +# needed for --with-openib +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' -- GitLab From 89ee72e0a470a568a889c5524ce78f3648eda4ac Mon Sep 17 00:00:00 2001 From: Pablo Escobar Lopez Date: Thu, 12 Feb 2015 13:10:01 +0100 Subject: [PATCH 0632/1217] added HPL-2.1-iomkl-2015.02.eb --- .../easyconfigs/h/HPL/HPL-2.1-iomkl-2015.02.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-iomkl-2015.02.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-iomkl-2015.02.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-iomkl-2015.02.eb new file mode 100644 index 0000000000..28511646d6 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-iomkl-2015.02.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'iomkl', 'version': '2015.02'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' -- GitLab From 96060d2f318003c44b3b7cb3e05cde290367a490 Mon Sep 17 00:00:00 2001 From: Adam Mazur Date: Thu, 12 Feb 2015 17:11:59 +0100 Subject: [PATCH 0633/1217] pmw python library --- .../Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/p/Pmw/Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb diff --git a/easybuild/easyconfigs/p/Pmw/Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/p/Pmw/Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb new file mode 100644 index 0000000000..e2f286887c --- /dev/null +++ b/easybuild/easyconfigs/p/Pmw/Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Adam Mazur +# Research IT +# Biozentrum, University of Basel + +easyblock = "PythonPackage" + +name = 'Pmw' +version = '1.3.3' + +homepage = 'http://pmw.sourceforge.net' +description = """Pmw is a toolkit for building high-level compound widgets in Python + using the Tkinter module. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://sourceforge.net/projects/%(namelower)s/files/%(name)s/%(name)s.%(version)s/', '/download'] +sources = ['%(name)s.%(version)s.tar.gz'] + +python = 'Python' +pyver = '2.7.5' +pyshortver = '.'.join(pyver.split('.')[:2]) + +versionsuffix = "-%s-%s" % (python, pyver) + +dependencies = [ + (python, pyver), +] + +options = {'modulename': 'Pmw'} + +sanity_check_paths = { + 'files': ['lib/python%s/site-packages/%s-%s-py%s.egg-info' % (pyshortver, name, version, pyshortver)], + 'dirs': [], +} + +moduleclass = 'vis' -- GitLab From b6a9297bc3958fbb331324c778005fe4c88b3498 Mon Sep 17 00:00:00 2001 From: Fotis Georgatos Date: Thu, 12 Feb 2015 20:53:15 +0100 Subject: [PATCH 0634/1217] rename rCUDA_5.0_linux_64_scientificLinux6.eb as rCUDA-5.0* Signed-off-by: Fotis Georgatos --- ...scientificLinux6.eb => rCUDA-5.0_linux_64_scientificLinux6.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/r/rCUDA/{rCUDA_5.0_linux_64_scientificLinux6.eb => rCUDA-5.0_linux_64_scientificLinux6.eb} (100%) diff --git a/easybuild/easyconfigs/r/rCUDA/rCUDA_5.0_linux_64_scientificLinux6.eb b/easybuild/easyconfigs/r/rCUDA/rCUDA-5.0_linux_64_scientificLinux6.eb similarity index 100% rename from easybuild/easyconfigs/r/rCUDA/rCUDA_5.0_linux_64_scientificLinux6.eb rename to easybuild/easyconfigs/r/rCUDA/rCUDA-5.0_linux_64_scientificLinux6.eb -- GitLab From 96eadea73ee77fb689b185578200ef7417ebb0a5 Mon Sep 17 00:00:00 2001 From: Adam Mazur Date: Fri, 13 Feb 2015 16:57:21 +0100 Subject: [PATCH 0635/1217] removed the 'download/' string from the source_urls list --- .../easyconfigs/p/Pmw/Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/Pmw/Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/p/Pmw/Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb index e2f286887c..c8749eca4a 100644 --- a/easybuild/easyconfigs/p/Pmw/Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/p/Pmw/Pmw-1.3.3-goolf-1.4.10-Python-2.7.5.eb @@ -14,7 +14,7 @@ description = """Pmw is a toolkit for building high-level compound widgets in Py toolchain = {'name': 'goolf', 'version': '1.4.10'} -source_urls = ['http://sourceforge.net/projects/%(namelower)s/files/%(name)s/%(name)s.%(version)s/', '/download'] +source_urls = ['http://sourceforge.net/projects/%(namelower)s/files/%(name)s/%(name)s.%(version)s/'] sources = ['%(name)s.%(version)s.tar.gz'] python = 'Python' -- GitLab From c8d8b591b6e516e5318e471b9097bae7b201af06 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 14 Feb 2015 10:53:03 +0100 Subject: [PATCH 0636/1217] add easyconfig file for GAMESS-US 2014.12.05-R1, including patch to make rungms work with SLURM --- .../GAMESS-US-2014.12.05-R1-intel-2015a.eb | 21 ++++++ .../g/GAMESS-US/GAMESS-US_rungms-slurm.patch | 67 +++++++++++++++++++ 2 files changed, 88 insertions(+) create mode 100644 easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-2014.12.05-R1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/g/GAMESS-US/GAMESS-US_rungms-slurm.patch diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-2014.12.05-R1-intel-2015a.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-2014.12.05-R1-intel-2015a.eb new file mode 100644 index 0000000000..88ffa942b9 --- /dev/null +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-2014.12.05-R1-intel-2015a.eb @@ -0,0 +1,21 @@ +name = 'GAMESS-US' +version = '20141205-R1' + +homepage = 'http://www.msg.chem.iastate.edu/gamess/index.html' +description = """ The General Atomic and Molecular Electronic Structure System (GAMESS) + is a general ab initio quantum chemistry package. """ + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'usempi': True} + +# manually download via http://www.msg.chem.iastate.edu/gamess/download.html (requires registration) +sources = ['gamess-%(version)s.tar.gz'] + +patches = ['GAMESS-US_rungms-slurm.patch'] + +# increase these numbers if your system is bigger in terms of cores-per-node or number of nodes +# it's OK if these values are larger than what your system provides +maxcpus = '1000' +maxnodes = '100000' + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US_rungms-slurm.patch b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US_rungms-slurm.patch new file mode 100644 index 0000000000..93831aab9e --- /dev/null +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US_rungms-slurm.patch @@ -0,0 +1,67 @@ +This patch adds support for the SLURM scheduler (without removing support for +the PBS or SGE schedulers). + +Written by Benjamin Roberts, New Zealand eScience Infrastructure +University of Auckland, Auckland, New Zealand +--- gamess.orig/rungms 2013-05-18 04:15:11.000000000 +1200 ++++ gamess/rungms 2015-01-29 17:39:53.359679532 +1300 +@@ -86,6 +92,7 @@ + set SCHED=none + if ($?PBS_O_LOGNAME) set SCHED=PBS + if ($?SGE_O_LOGNAME) set SCHED=SGE ++if ($?SLURM_JOB_ID) set SCHED=SLURM + if ($SCHED == SGE) then + set SCR=$TMPDIR + echo "SGE has assigned the following compute nodes to this run:" +@@ -96,6 +103,13 @@ + echo "PBS has assigned the following compute nodes to this run:" + uniq $PBS_NODEFILE + endif ++if ($SCHED == SLURM) then ++ # SCR is for large binary temporary files. Accordingly, it should only be ++ # set to a network file system if the connection to that file system is fast. ++ set SCR=$SCRATCH_DIR ++ echo "SLURM has assigned the following compute nodes to this run:" ++ scontrol show hostnames $SLURM_JOB_NODELIST | sort | uniq ++endif + # + echo "Available scratch disk space (Kbyte units) at beginning of the job is" + df -k $SCR +@@ -594,6 +608,11 @@ + set NNODES=`wc -l $HOSTFILE` + set NNODES=$NNODES[1] + endif ++ if ($SCHED == SLURM) then ++ scontrol show hostnames $SLURM_JOB_NODELIST | sort | uniq > $HOSTFILE ++ set NNODES=`wc -l $HOSTFILE` ++ set NNODES=$NNODES[1] ++ endif + endif + # uncomment next lines if you need to debug host configuration. + #--echo '-----debug----' +@@ -825,8 +844,12 @@ + unset echo + endif + set echo +- mpiexec.hydra -f $PROCFILE -n $NPROCS \ ++ if ($SCHED == SLURM) then ++ srun $GMSPATH/gamess.$VERNO.x < /dev/null ++ else ++ mpiexec.hydra -f $PROCFILE -n $NPROCS \ + $GMSPATH/gamess.$VERNO.x < /dev/null ++ endif + unset echo + breaksw + # +@@ -906,6 +929,11 @@ + set NNODES=`wc -l $HOSTFILE` + set NNODES=$NNODES[1] + endif ++ if ($SCHED == SLURM) then ++ scontrol show hostnames $SLURM_JOB_NODELIST | sort | uniq > $HOSTFILE ++ set NNODES=`wc -l $HOSTFILE` ++ set NNODES=$NNODES[1] ++ endif + endif + # uncomment next lines if you need to debug host configuration. + #--echo '-----debug----' -- GitLab From bcf9de7c70b68a488d1b867ed25e4d8a451fac5d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 14 Feb 2015 13:45:42 +0100 Subject: [PATCH 0637/1217] fix easyconfig file name for GAMESS-US --- ....05-R1-intel-2015a.eb => GAMESS-US-20141205-R1-intel-2015a.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/g/GAMESS-US/{GAMESS-US-2014.12.05-R1-intel-2015a.eb => GAMESS-US-20141205-R1-intel-2015a.eb} (100%) diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-2014.12.05-R1-intel-2015a.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20141205-R1-intel-2015a.eb similarity index 100% rename from easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-2014.12.05-R1-intel-2015a.eb rename to easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20141205-R1-intel-2015a.eb -- GitLab From 3209efcbfe2dc20fe572c16a43281e655628ab8c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 14 Feb 2015 20:37:45 +0100 Subject: [PATCH 0638/1217] include checksum for GAMESS-US source tarball, add easyconfig for GAMESS-US v20130501-R1 with ictce/6.2.5 (thanks @pescobar) --- .../GAMESS-US-20130501-R1-ictce-6.1.5.eb | 23 +++++++++++++++++++ .../GAMESS-US-20141205-R1-intel-2015a.eb | 2 ++ 2 files changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-ictce-6.1.5.eb diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-ictce-6.1.5.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-ictce-6.1.5.eb new file mode 100644 index 0000000000..da31b958ee --- /dev/null +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-ictce-6.1.5.eb @@ -0,0 +1,23 @@ +name = 'GAMESS-US' +version = '20130501-R1' + +homepage = 'http://www.msg.chem.iastate.edu/gamess/index.html' +description = """ The General Atomic and Molecular Electronic Structure System (GAMESS) + is a general ab initio quantum chemistry package. """ + +toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchainopts = {'usempi': True} + +# manually download via http://www.msg.chem.iastate.edu/gamess/download.html (requires registration) +# rename gamess-current.tar.gz by changing 'current' to the proper version +sources = ['gamess-%(version)s.tar.gz'] +checksums = ['977a01a8958238c67b707f125999fcec'] + +patches = ['GAMESS-US_rungms-slurm.patch'] + +# increase these numbers if your system is bigger in terms of cores-per-node or number of nodes +# it's OK if these values are larger than what your system provides +maxcpus = '1000' +maxnodes = '100000' + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20141205-R1-intel-2015a.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20141205-R1-intel-2015a.eb index 88ffa942b9..00832c574c 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20141205-R1-intel-2015a.eb +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20141205-R1-intel-2015a.eb @@ -9,7 +9,9 @@ toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'usempi': True} # manually download via http://www.msg.chem.iastate.edu/gamess/download.html (requires registration) +# rename gamess-current.tar.gz by changing 'current' to the proper version sources = ['gamess-%(version)s.tar.gz'] +checksums = ['6403592eaa885cb3691505964d684516'] patches = ['GAMESS-US_rungms-slurm.patch'] -- GitLab From 75f3623885563aaf55607d513af710329482b71e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 14 Feb 2015 20:44:01 +0100 Subject: [PATCH 0639/1217] sync GAMESS-US easyconfig for goolf/1.5.14-no-OFED with #1406 --- ...ESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb | 19 ++++++---- .../easyconfigs/g/GAMESS-US/gamess_TMP.patch | 36 ------------------- 2 files changed, 12 insertions(+), 43 deletions(-) delete mode 100644 easybuild/easyconfigs/g/GAMESS-US/gamess_TMP.patch diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb index c2b22536d1..fdb027a1ed 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb @@ -1,18 +1,23 @@ name = 'GAMESS-US' version = '20130501-R1' -homepage = 'http://www.msg.ameslab.gov/gamess/' -description = """The General Atomic and Molecular Electronic Structure System (GAMESS) - is a general ab initio quantum chemistry package.""" +homepage = 'http://www.msg.chem.iastate.edu/gamess/index.html' +description = """ The General Atomic and Molecular Electronic Structure System (GAMESS) + is a general ab initio quantum chemistry package. """ toolchain = {'name': 'goolf', 'version': '1.5.14-no-OFED'} -toolchainopts = {'usempi': True, 'optarch': False} +toolchainopts = {'usempi': True} # manually download via http://www.msg.chem.iastate.edu/gamess/download.html (requires registration) +# rename gamess-current.tar.gz by changing 'current' to the proper version sources = ['gamess-%(version)s.tar.gz'] -patches = ['gamess_TMP.patch'] +checksums = ['977a01a8958238c67b707f125999fcec'] -maxcpus = 4 -maxnodes = 1 +patches = ['GAMESS-US_rungms-slurm.patch'] + +# increase these numbers if your system is bigger in terms of cores-per-node or number of nodes +# it's OK if these values are larger than what your system provides +maxcpus = '1000' +maxnodes = '100000' moduleclass = 'chem' diff --git a/easybuild/easyconfigs/g/GAMESS-US/gamess_TMP.patch b/easybuild/easyconfigs/g/GAMESS-US/gamess_TMP.patch deleted file mode 100644 index 795144d2dc..0000000000 --- a/easybuild/easyconfigs/g/GAMESS-US/gamess_TMP.patch +++ /dev/null @@ -1,36 +0,0 @@ ---- gamess/compall.orig 2014-06-11 18:37:54.000000000 +0200 -+++ gamess/compall 2014-06-11 18:40:44.000000000 +0200 -@@ -97,7 +97,7 @@ - # Debian uses the -m flag, since its -p replies "unknown" - # Gentoo uses the -m flag, since its -p gives an unusable multiword reply - if ($TARGET == linux64) then -- set chip=(`uname -p`) -+ set chip=(`uname -m`) - if (${#chip} > 1) set chip=unknown - if ($chip == unknown) set chip=`uname -m` - if ($chip == x86_64) set extraflags='-DLINUX64 -m64' ---- gamess/comp.orig 2014-06-11 21:26:28.000000000 +0200 -+++ gamess/comp 2014-06-11 21:26:03.000000000 +0200 -@@ -1806,6 +1804,8 @@ - breaksw - case 4.6: - case 4.7: -+ case 4.8: -+ case 4.9: - set EXTRAOPT="$EXTRAOPT -fno-whole-file" - breaksw - default: ---- gamess/source/zunix.c.orig 2014-06-12 08:52:56.000000000 +0200 -+++ gamess/source/zunix.c 2014-06-12 08:53:05.000000000 +0200 -@@ -443,7 +443,7 @@ - #ifdef LINUX64 - - #include --#include -+#include - - #define FORTINT long - -[?25l[?12l[?25h[?1049h[?1h=[?12;25h[?12l[?25h[?25l"diff" [New File]~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ [?12l[?25h[?25lType :quit to exit Vim[?12l[?25h[?1l>[?1049lVim: Error reading input, exiting... -Vim: Finished. -2 files to edit -- GitLab From 113777fd072dd181b3ea9aee0e611bbd10ed94a7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 14 Feb 2015 20:46:07 +0100 Subject: [PATCH 0640/1217] include patch file for GAMESS-uS rungms script --- .../g/GAMESS-US/GAMESS-US_rungms-slurm.patch | 67 +++++++++++++++++++ 1 file changed, 67 insertions(+) create mode 100644 easybuild/easyconfigs/g/GAMESS-US/GAMESS-US_rungms-slurm.patch diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US_rungms-slurm.patch b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US_rungms-slurm.patch new file mode 100644 index 0000000000..93831aab9e --- /dev/null +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US_rungms-slurm.patch @@ -0,0 +1,67 @@ +This patch adds support for the SLURM scheduler (without removing support for +the PBS or SGE schedulers). + +Written by Benjamin Roberts, New Zealand eScience Infrastructure +University of Auckland, Auckland, New Zealand +--- gamess.orig/rungms 2013-05-18 04:15:11.000000000 +1200 ++++ gamess/rungms 2015-01-29 17:39:53.359679532 +1300 +@@ -86,6 +92,7 @@ + set SCHED=none + if ($?PBS_O_LOGNAME) set SCHED=PBS + if ($?SGE_O_LOGNAME) set SCHED=SGE ++if ($?SLURM_JOB_ID) set SCHED=SLURM + if ($SCHED == SGE) then + set SCR=$TMPDIR + echo "SGE has assigned the following compute nodes to this run:" +@@ -96,6 +103,13 @@ + echo "PBS has assigned the following compute nodes to this run:" + uniq $PBS_NODEFILE + endif ++if ($SCHED == SLURM) then ++ # SCR is for large binary temporary files. Accordingly, it should only be ++ # set to a network file system if the connection to that file system is fast. ++ set SCR=$SCRATCH_DIR ++ echo "SLURM has assigned the following compute nodes to this run:" ++ scontrol show hostnames $SLURM_JOB_NODELIST | sort | uniq ++endif + # + echo "Available scratch disk space (Kbyte units) at beginning of the job is" + df -k $SCR +@@ -594,6 +608,11 @@ + set NNODES=`wc -l $HOSTFILE` + set NNODES=$NNODES[1] + endif ++ if ($SCHED == SLURM) then ++ scontrol show hostnames $SLURM_JOB_NODELIST | sort | uniq > $HOSTFILE ++ set NNODES=`wc -l $HOSTFILE` ++ set NNODES=$NNODES[1] ++ endif + endif + # uncomment next lines if you need to debug host configuration. + #--echo '-----debug----' +@@ -825,8 +844,12 @@ + unset echo + endif + set echo +- mpiexec.hydra -f $PROCFILE -n $NPROCS \ ++ if ($SCHED == SLURM) then ++ srun $GMSPATH/gamess.$VERNO.x < /dev/null ++ else ++ mpiexec.hydra -f $PROCFILE -n $NPROCS \ + $GMSPATH/gamess.$VERNO.x < /dev/null ++ endif + unset echo + breaksw + # +@@ -906,6 +929,11 @@ + set NNODES=`wc -l $HOSTFILE` + set NNODES=$NNODES[1] + endif ++ if ($SCHED == SLURM) then ++ scontrol show hostnames $SLURM_JOB_NODELIST | sort | uniq > $HOSTFILE ++ set NNODES=`wc -l $HOSTFILE` ++ set NNODES=$NNODES[1] ++ endif + endif + # uncomment next lines if you need to debug host configuration. + #--echo '-----debug----' -- GitLab From 3ea75c4d5fff471c1e6624eea2afc6fdcb5f09f9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 15 Feb 2015 15:41:53 +0100 Subject: [PATCH 0641/1217] replace GAMESS-US 20130501-R1 easyconfig using ictce/6.2.5 with one using intel/2015a --- ...1-R1-ictce-6.1.5.eb => GAMESS-US-20130501-R1-intel-2015a.eb} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/g/GAMESS-US/{GAMESS-US-20130501-R1-ictce-6.1.5.eb => GAMESS-US-20130501-R1-intel-2015a.eb} (94%) diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-ictce-6.1.5.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-intel-2015a.eb similarity index 94% rename from easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-ictce-6.1.5.eb rename to easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-intel-2015a.eb index da31b958ee..9ef05a983e 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-ictce-6.1.5.eb +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-intel-2015a.eb @@ -5,7 +5,7 @@ homepage = 'http://www.msg.chem.iastate.edu/gamess/index.html' description = """ The General Atomic and Molecular Electronic Structure System (GAMESS) is a general ab initio quantum chemistry package. """ -toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'usempi': True} # manually download via http://www.msg.chem.iastate.edu/gamess/download.html (requires registration) -- GitLab From 71b420fcdb733a4cc3c96bd5ba41b5d7cfad3f5b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Feb 2015 09:04:18 +0100 Subject: [PATCH 0642/1217] add easyconfig for worker framework --- .../w/worker/worker-1.5.1-intel-2015a.eb | 20 +++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100644 easybuild/easyconfigs/w/worker/worker-1.5.1-intel-2015a.eb diff --git a/easybuild/easyconfigs/w/worker/worker-1.5.1-intel-2015a.eb b/easybuild/easyconfigs/w/worker/worker-1.5.1-intel-2015a.eb new file mode 100644 index 0000000000..ca46ed7819 --- /dev/null +++ b/easybuild/easyconfigs/w/worker/worker-1.5.1-intel-2015a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'worker' +version = '1.5.1' + +homepage = 'https://github.com/gjbex/worker' +description = """The Worker framework has been developed to help deal with parameter exploration experiments + that would otherwise result in many jobs, forcing the user resort to scripting to retain her sanity; + see also https://vscentrum.be/neutral/documentation/cluster-doc/running-jobs/worker-framework.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['https://github.com/gjbex/worker/archive/'] +sources = ['%(version)s.tar.gz'] + +dependencies = [ + ('Perl', '5.20.1', '-bare') +] + +moduleclass = 'tools' -- GitLab From 2b41f30c4f0a3b02ea48f0dea2be70372367c013 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Feb 2015 09:18:16 +0100 Subject: [PATCH 0643/1217] enable 'usempi' in worker easyconfig --- easybuild/easyconfigs/w/worker/worker-1.5.1-intel-2015a.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/w/worker/worker-1.5.1-intel-2015a.eb b/easybuild/easyconfigs/w/worker/worker-1.5.1-intel-2015a.eb index ca46ed7819..600c35a7cd 100644 --- a/easybuild/easyconfigs/w/worker/worker-1.5.1-intel-2015a.eb +++ b/easybuild/easyconfigs/w/worker/worker-1.5.1-intel-2015a.eb @@ -9,6 +9,7 @@ description = """The Worker framework has been developed to help deal with param see also https://vscentrum.be/neutral/documentation/cluster-doc/running-jobs/worker-framework.""" toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'usempi': True} source_urls = ['https://github.com/gjbex/worker/archive/'] sources = ['%(version)s.tar.gz'] -- GitLab From 86ecd3e263325dd2260060451c52a697a2586597 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 16 Feb 2015 10:50:40 +0100 Subject: [PATCH 0644/1217] Small fix in ISL easyconfig --- easybuild/easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb b/easybuild/easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb index 7b675a2960..3ba25676db 100644 --- a/easybuild/easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb @@ -4,12 +4,12 @@ name = 'ISL' version = '0.14' homepage = 'http://isl.gforge.inria.fr/' -description = """isl is a library for manipulating sets and relations of integer points bounded by linear constraints. """ +description = """isl is a library for manipulating sets and relations of integer points bounded by linear constraints.""" toolchain = {'name': 'GCC', 'version': '4.9.2'} -sources = ['isl-0.14.tar.bz2'] source_urls = ['http://isl.gforge.inria.fr/'] +sources = [SOURCELOWER_TAR_BZ2] dependencies = [('GMP', '6.0.0')] @@ -18,4 +18,4 @@ sanity_check_paths = { 'dirs': ['include/isl'] } -moduleclass = 'compiler' +moduleclass = 'math' -- GitLab From e802ef4de074572663983ea57f2eed1dca73fa35 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 16 Feb 2015 10:52:56 +0100 Subject: [PATCH 0645/1217] Added newer CMake version --- .../c/CMake/CMake-3.1.3-GCC-4.9.2.eb | 22 +++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.1.3-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.1.3-GCC-4.9.2.eb b/easybuild/easyconfigs/c/CMake/CMake-3.1.3-GCC-4.9.2.eb new file mode 100644 index 0000000000..674ad2c737 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.1.3-GCC-4.9.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.1.3' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From c25baf6baf94eeb0bbb20bee69bc8bd1512a9e16 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 16 Feb 2015 10:53:14 +0100 Subject: [PATCH 0646/1217] Use newer CMake --- easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb index c22450fce4..1fa4fc4b47 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb @@ -29,7 +29,7 @@ sources = [ "polly-%(version)src2.src.tar.xz", ] -builddependencies = [('CMake', '3.1.0')] +builddependencies = [('CMake', '3.1.3')] dependencies = [ ('GMP', '6.0.0'), -- GitLab From 54ac2b4927e8db845f48b726090f0453da36b14f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 16 Feb 2015 12:28:11 +0100 Subject: [PATCH 0647/1217] add postinstallcmds in worker easyconfig file --- .../easyconfigs/w/worker/worker-1.5.1-intel-2015a.eb | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/easybuild/easyconfigs/w/worker/worker-1.5.1-intel-2015a.eb b/easybuild/easyconfigs/w/worker/worker-1.5.1-intel-2015a.eb index 600c35a7cd..e3023d8f2c 100644 --- a/easybuild/easyconfigs/w/worker/worker-1.5.1-intel-2015a.eb +++ b/easybuild/easyconfigs/w/worker/worker-1.5.1-intel-2015a.eb @@ -18,4 +18,14 @@ dependencies = [ ('Perl', '5.20.1', '-bare') ] +# adjust worker configuration file +# note: tweak this to your local setup +postinstallcmds = [ + 'sed -i "s/ cores_per_node = .*/ cores_per_node = 16/g" %(installdir)s/conf/worker.conf', # tweak this + 'sed -i "s@ qsub = .*@ qsub = `which qsub`@g" %(installdir)s/conf/worker.conf', + 'sed -i "s/ email = .*/ email = hpc-support@example.com/g" %(installdir)s/conf/worker.conf', # tweak this + 'sed -i "s/ unload_modules = .*/ unload_modules = intel/g" %(installdir)s/conf/worker.conf', # tweak this (maybe) + 'sed -i "s@ mpi_module = .*@ mpi_module = intel/2015a@g" %(installdir)s/conf/worker.conf', # tweak this (maybe) +] + moduleclass = 'tools' -- GitLab From f1f1bef8d7a3db8bdd0b5340fdfc35c937d25a1c Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 17 Feb 2015 15:55:07 +0100 Subject: [PATCH 0648/1217] Fixed style issue --- easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb index e311f5fe2d..131eedc724 100644 --- a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb +++ b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'Octave' version = '3.8.2' -- GitLab From 662aa111a1977f3f57405f8b1e4be10669bc37c0 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Wed, 18 Feb 2015 13:23:59 +0100 Subject: [PATCH 0649/1217] Dummy --- .../easyconfigs/b/BLAST/BLAST-2.2.30-intel2015a-Python-2.7.9.eb | 1 + 1 file changed, 1 insertion(+) create mode 100644 easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-intel2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-intel2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-intel2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..f747925bf5 --- /dev/null +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-intel2015a-Python-2.7.9.eb @@ -0,0 +1 @@ +DUMMY -- GitLab From 662d8eeba0f855a57297b0d89baec39216897bf9 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Wed, 18 Feb 2015 13:32:06 +0100 Subject: [PATCH 0650/1217] Revert "Autoconf dep removed" This reverts commit 7bcb5ac31cf03ffd1559e4f91a163ec59e7c0109. Get lost in time and space --- easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb index ae2c3c32ff..e3c5f86d83 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb @@ -24,6 +24,7 @@ sources = ['ocaml-%(version)s.tar.gz'] sourcedir = name.lower() + '-' + '.'.join(version.split('.')[0:-1]) source_urls = ['http://caml.inria.fr/pub/distrib/%s' % sourcedir] +builddependencies = [('Autoconf', '2.69')] dependencies = [('ncurses', '5.9')] prefix_opt = "-prefix " -- GitLab From 0e65ccdc46d930869e2971b9704aff735b485a09 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Wed, 18 Feb 2015 13:33:06 +0100 Subject: [PATCH 0651/1217] Revert "Autoconf dep removed" This reverts commit 7bcb5ac31cf03ffd1559e4f91a163ec59e7c0109. Get Lost In Time And Space --- easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb index ae2c3c32ff..e3c5f86d83 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb @@ -24,6 +24,7 @@ sources = ['ocaml-%(version)s.tar.gz'] sourcedir = name.lower() + '-' + '.'.join(version.split('.')[0:-1]) source_urls = ['http://caml.inria.fr/pub/distrib/%s' % sourcedir] +builddependencies = [('Autoconf', '2.69')] dependencies = [('ncurses', '5.9')] prefix_opt = "-prefix " -- GitLab From 9d3a7ca103b2e49be9a784e9b794f7445aecf819 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Wed, 18 Feb 2015 15:29:49 +0100 Subject: [PATCH 0652/1217] Real --- .../BLAST-2.2.30-intel-2015a-Python-2.7.9.eb | 44 +++++ .../BLAST-2.2.30-intel2015a-Python-2.7.9.eb | 1 - .../b/BLAST/BLAST-2.2.30_basename-fixes.patch | 173 ++++++++++++++++++ .../b/BLAST/BLAST-2.2.30_ictce-fixes.patch | 12 ++ 4 files changed, 229 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-intel-2015a-Python-2.7.9.eb delete mode 100644 easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-intel2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/b/BLAST/BLAST-2.2.30_basename-fixes.patch create mode 100644 easybuild/easyconfigs/b/BLAST/BLAST-2.2.30_ictce-fixes.patch diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..66879c0ee8 --- /dev/null +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,44 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'ConfigureMake' + +name = 'BLAST' +version = '2.2.30' +versionsuffix = '-Python-2.7.9' + +homepage = 'http://blast.ncbi.nlm.nih.gov/' +description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm + for comparing primary biological sequence information, such as the amino-acid + sequences of different proteins or the nucleotides of DNA sequences.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +# eg. ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-src.tar.gz +sources = ['ncbi-blast-%(version)s+-src.tar.gz'] +source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] + +patches = [ + '%(name)s-%(version)s_ictce-fixes.patch', + '%(name)s-%(version)s_basename-fixes.patch' +] + +dependencies = [('Boost', '1.57.0', versionsuffix)] + +configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' + +sanity_check_paths = { + 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-intel2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-intel2015a-Python-2.7.9.eb deleted file mode 100644 index f747925bf5..0000000000 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-intel2015a-Python-2.7.9.eb +++ /dev/null @@ -1 +0,0 @@ -DUMMY diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30_basename-fixes.patch b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30_basename-fixes.patch new file mode 100644 index 0000000000..25b21c2317 --- /dev/null +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30_basename-fixes.patch @@ -0,0 +1,173 @@ +#Let configure(.ac) determine the absolute path to basename, rather +#than having Makefile.in.top hardcode /usr/bin/basename, which fails on +#at least stock CentOS 6 (which supplies only /bin/basename). +#http://www.ncbi.nlm.nih.gov/viewvc/v1?view=revision&revision=65204 +#B. Hajgato 02/18/2015 +--- trunk/c++/src/build-system/Makefile.in.top 2014/11/12 15:16:56 65203 ++++ trunk/c++/src/build-system/Makefile.in.top 2014/11/12 16:41:55 65204 +@@ -11,6 +11,7 @@ + libdir = @libdir@ + includedir = @includedir@ + pincludedir = $(includedir)/$(PACKAGE_NAME) ++BASENAME = @BASENAME@ + INSTALL = @INSTALL@ + LN_S = @LN_S@ + +@@ -46,7 +47,7 @@ + -rm -f $(libdir)/lib*-static.a + cd $(libdir) && \ + for x in *.a; do \ +- $(LN_S) "$$x" "`/usr/bin/basename \"$$x\" .a`-static.a"; \ ++ $(LN_S) "$$x" "`$(BASENAME) \"$$x\" .a`-static.a"; \ + done + cd $(includedir0) && find * -name CVS -prune -o -print |\ + cpio -pd $(pincludedir) +--- trunk/c++/src/build-system/configure 2014/11/12 15:16:56 65203 ++++ trunk/c++/src/build-system/configure 2014/11/12 16:41:55 65204 +@@ -682,6 +682,7 @@ + DISTCC + CCACHE + TAIL ++BASENAME + SED + TOUCH + GREP +@@ -8413,6 +8414,46 @@ + echo "${ECHO_T}no" >&6; } + fi + ++# Extract the first word of "basename", so it can be a program name with args. ++set dummy basename; ac_word=$2 ++{ echo "$as_me:$LINENO: checking for $ac_word" >&5 ++echo $ECHO_N "checking for $ac_word... $ECHO_C" >&6; } ++if test "${ac_cv_path_BASENAME+set}" = set; then ++ echo $ECHO_N "(cached) $ECHO_C" >&6 ++else ++ case $BASENAME in ++ [\\/]* | ?:[\\/]*) ++ ac_cv_path_BASENAME="$BASENAME" # Let the user override the test with a path. ++ ;; ++ *) ++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_executable_p "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_path_BASENAME="$as_dir/$ac_word$ac_exec_ext" ++ echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++done ++IFS=$as_save_IFS ++ ++ ;; ++esac ++fi ++BASENAME=$ac_cv_path_BASENAME ++if test -n "$BASENAME"; then ++ { echo "$as_me:$LINENO: result: $BASENAME" >&5 ++echo "${ECHO_T}$BASENAME" >&6; } ++else ++ { echo "$as_me:$LINENO: result: no" >&5 ++echo "${ECHO_T}no" >&6; } ++fi ++ ++ + # Extract the first word of "sed", so it can be a program name with args. + set dummy sed; ac_word=$2 + { echo "$as_me:$LINENO: checking for $ac_word" >&5 +@@ -41750,6 +41791,7 @@ + DISTCC!$DISTCC$ac_delim + CCACHE!$CCACHE$ac_delim + TAIL!$TAIL$ac_delim ++BASENAME!$BASENAME$ac_delim + SED!$SED$ac_delim + TOUCH!$TOUCH$ac_delim + GREP!$GREP$ac_delim +@@ -41772,7 +41814,6 @@ + GCRYPT_INCLUDE!$GCRYPT_INCLUDE$ac_delim + GCRYPT_LIBS!$GCRYPT_LIBS$ac_delim + LIBGNUTLS_CONFIG!$LIBGNUTLS_CONFIG$ac_delim +-GNUTLS_INCLUDE!$GNUTLS_INCLUDE$ac_delim + _ACEOF + + if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 97; then +@@ -41814,6 +41855,7 @@ + ac_delim='%!_!# ' + for ac_last_try in false false false false false :; do + cat >conf$$subs.sed <<_ACEOF ++GNUTLS_INCLUDE!$GNUTLS_INCLUDE$ac_delim + GNUTLS_LIBS!$GNUTLS_LIBS$ac_delim + OPENSSL_INCLUDE!$OPENSSL_INCLUDE$ac_delim + OPENSSL_LIBS!$OPENSSL_LIBS$ac_delim +@@ -41910,7 +41952,6 @@ + status_dir!$status_dir$ac_delim + builddir!$builddir$ac_delim + runpath!$runpath$ac_delim +-ncbi_runpath!$ncbi_runpath$ac_delim + _ACEOF + + if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 97; then +@@ -41952,6 +41993,7 @@ + ac_delim='%!_!# ' + for ac_last_try in false false false false false :; do + cat >conf$$subs.sed <<_ACEOF ++ncbi_runpath!$ncbi_runpath$ac_delim + c_ncbi_runpath!$c_ncbi_runpath$ac_delim + LINK!$LINK$ac_delim + C_LINK!$C_LINK$ac_delim +@@ -42048,7 +42090,6 @@ + BZ2_LIB!$BZ2_LIB$ac_delim + PCREPOSIX_LIBS!$PCREPOSIX_LIBS$ac_delim + PCRE_LIB!$PCRE_LIB$ac_delim +-OPENSSL_STATIC_LIBS!$OPENSSL_STATIC_LIBS$ac_delim + _ACEOF + + if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 97; then +@@ -42090,6 +42131,7 @@ + ac_delim='%!_!# ' + for ac_last_try in false false false false false :; do + cat >conf$$subs.sed <<_ACEOF ++OPENSSL_STATIC_LIBS!$OPENSSL_STATIC_LIBS$ac_delim + TLS_INCLUDE!$TLS_INCLUDE$ac_delim + TLS_LIBS!$TLS_LIBS$ac_delim + SYBASE_PATH!$SYBASE_PATH$ac_delim +@@ -42186,7 +42228,6 @@ + AVRO_STATIC_LIBS!$AVRO_STATIC_LIBS$ac_delim + MONGODB_STATIC_LIBS!$MONGODB_STATIC_LIBS$ac_delim + ncbi_xreader_pubseqos!$ncbi_xreader_pubseqos$ac_delim +-ncbi_xreader_pubseqos2!$ncbi_xreader_pubseqos2$ac_delim + _ACEOF + + if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 97; then +@@ -42228,6 +42269,7 @@ + ac_delim='%!_!# ' + for ac_last_try in false false false false false :; do + cat >conf$$subs.sed <<_ACEOF ++ncbi_xreader_pubseqos2!$ncbi_xreader_pubseqos2$ac_delim + UNLESS_PUBSEQOS!$UNLESS_PUBSEQOS$ac_delim + PERL_INCLUDE!$PERL_INCLUDE$ac_delim + PERL_LIBS!$PERL_LIBS$ac_delim +@@ -42266,7 +42308,7 @@ + LTLIBOBJS!$LTLIBOBJS$ac_delim + _ACEOF + +- if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 36; then ++ if test `sed -n "s/.*$ac_delim\$/X/p" conf$$subs.sed | grep -c X` = 37; then + break + elif $ac_last_try; then + { { echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5 +--- trunk/c++/src/build-system/configure.ac 2014/11/12 15:16:56 65203 ++++ trunk/c++/src/build-system/configure.ac 2014/11/12 16:41:55 65204 +@@ -2255,6 +2255,7 @@ + AC_MSG_RESULT(no) + fi + ++AC_PATH_PROG(BASENAME, basename) + AC_PATH_PROG(SED, sed) + AC_PATH_PROG(TOUCH, touch, [], /bin:/usr/bin:$PATH) + dnl AC_PATH_PROG(GREP, grep) + diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30_ictce-fixes.patch b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30_ictce-fixes.patch new file mode 100644 index 0000000000..c43727c4bb --- /dev/null +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30_ictce-fixes.patch @@ -0,0 +1,12 @@ +diff -ru ncbi-blast-2.2.30+-src.orig/c++/src/build-system/configure ncbi-blast-2.2.30+-src/c++/src/build-system/configure +--- ncbi-blast-2.2.30+-src.orig/c++/src/build-system/configure 2014-08-08 17:36:55.000000000 +0200 ++++ ncbi-blast-2.2.30+-src/c++/src/build-system/configure 2015-01-18 13:53:21.006190873 +0100 +@@ -6537,6 +6537,8 @@ + mips-sgi-irix*:KCC ) + ARCH_CFLAGS="-64" + ;; ++ *:ICC ) ++ ;; + * ) + { { echo "$as_me:$LINENO: error: Do not know how to compile 64-bit with compiler $CXX $compiler_ver $host:$compiler" >&5 + echo "$as_me: error: Do not know how to compile 64-bit with compiler $CXX $compiler_ver $host:$compiler" >&2;} -- GitLab From 6c237bc9e30c49543f36abc8e845f8cf56757d6d Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Fri, 20 Feb 2015 11:05:36 -0500 Subject: [PATCH 0653/1217] bump in version --- .../s/SAMtools/SAMtools-1.2-foss-2015a.eb | 33 +++++++++++++++++++ .../s/SAMtools/SAMtools-1.2-goolf-1.4.10.eb | 33 +++++++++++++++++++ 2 files changed, 66 insertions(+) create mode 100644 easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a.eb create mode 100644 easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.4.10.eb diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a.eb new file mode 100644 index 0000000000..227c52d47d --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +## + +name = 'SAMtools' +version = '1.2' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] + +patches = ['SAMtools-1.1_Makefile.patch'] + +dependencies = [ + ('ncurses', '5.9'), + ('zlib', '1.2.8'), +] + +parallel = 1 + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.4.10.eb new file mode 100644 index 0000000000..15cb82566e --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.4.10.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +## + +name = 'SAMtools' +version = '1.2' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] + +patches = ['SAMtools-1.1_Makefile.patch'] + +dependencies = [ + ('ncurses', '5.9'), + ('zlib', '1.2.7'), +] + +parallel = 1 + +moduleclass = 'bio' -- GitLab From 5aed0f0efe6b1386ba4a4c0d9b5ef47e5e5c963c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Feb 2015 11:04:57 +0100 Subject: [PATCH 0654/1217] add easyconfig + patch for Hoard --- .../h/Hoard/Hoard-3.10-intel-2015a.eb | 26 ++++++++++++++ .../easyconfigs/h/Hoard/Hoard-3.x_CXX.patch | 34 +++++++++++++++++++ 2 files changed, 60 insertions(+) create mode 100644 easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb create mode 100644 easybuild/easyconfigs/h/Hoard/Hoard-3.x_CXX.patch diff --git a/easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb b/easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb new file mode 100644 index 0000000000..c1298de331 --- /dev/null +++ b/easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb @@ -0,0 +1,26 @@ +easyblock = 'MakeCp' + +name = 'Hoard' +version = '3.10' + +homepage = 'http://www.hoard.org/' +description = """Hoard is a fast, scalable, and memory-efficient memory allocator that can speed up your applications.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['https://github.com/emeryberger/Hoard/releases/download/%(version)s'] +sources = ['Hoard-%(version)s-source.tar.gz'] +patches = ['Hoard-%(version_major)s.x_CXX.patch'] + +start_dir = 'src' + +buildopts = 'linux-gcc-x86-64' + +files_to_copy = [(['libhoard.so'], 'lib')] + +sanity_check_paths = { + 'files': ['lib/libhoard.so'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/h/Hoard/Hoard-3.x_CXX.patch b/easybuild/easyconfigs/h/Hoard/Hoard-3.x_CXX.patch new file mode 100644 index 0000000000..0b3f914c43 --- /dev/null +++ b/easybuild/easyconfigs/h/Hoard/Hoard-3.x_CXX.patch @@ -0,0 +1,34 @@ +--- Hoard/src/Makefile.orig 2015-02-23 10:46:55.000000000 +0100 ++++ Hoard/src/Makefile 2015-02-23 10:51:28.000000000 +0100 +@@ -1,6 +1,7 @@ + # Commands to compile Hoard for various targets. + # Run make (with no arguments) to see the complete target list. + ++CXX ?= g++ + CPPFLAGS = -O3 + + all: +@@ -53,17 +54,17 @@ + + MACOS_COMPILE_DEBUG = clang++ -ftemplate-depth=1024 -arch i386 -arch x86_64 -pipe -g -O0 -Wall $(INCLUDES) -D_REENTRANT=1 -compatibility_version 1 -current_version 1 -dynamiclib $(MACOS_SRC) -o libhoard.dylib -ldl -lpthread + +-LINUX_GCC_x86_COMPILE = g++ $(CPPFLAGS) -I/usr/include/nptl -ffast-math -g -malign-double -pipe -finline-limit=20000 -finline-functions -DNDEBUG $(INCLUDES) -D_REENTRANT=1 -shared $(GNU_SRC) -Bsymbolic -o libhoard.so -ldl -lpthread ++LINUX_GCC_x86_COMPILE = $(CXX) $(CPPFLAGS) -I/usr/include/nptl -ffast-math -g -malign-double -pipe -finline-limit=20000 -finline-functions -DNDEBUG $(INCLUDES) -D_REENTRANT=1 -shared $(GNU_SRC) -Bsymbolic -o libhoard.so -ldl -lpthread + +-LINUX_GCC_x86_64_COMPILE = g++ $(CPPFLAGS) -g -W -Wconversion -Wall -I/usr/include/nptl -pipe -fPIC -finline-limit=20000 -finline-functions -DNDEBUG $(INCLUDES) -D_REENTRANT=1 -shared $(GNU_SRC) -Bsymbolic -o libhoard.so -ldl -lpthread ++LINUX_GCC_x86_64_COMPILE = $(CXX) $(CPPFLAGS) -g -W -Wconversion -Wall -I/usr/include/nptl -pipe -fPIC -finline-limit=20000 -finline-functions -DNDEBUG $(INCLUDES) -D_REENTRANT=1 -shared $(GNU_SRC) -Bsymbolic -o libhoard.so -ldl -lpthread + +-LINUX_GCC_x86_64_COMPILE_DEBUG = g++ $(CPPFLAGS) -g -W -Wconversion -Wall -I/usr/include/nptl -pipe -fPIC $(INCLUDES) -D_REENTRANT=1 -shared $(GNU_SRC) -Bsymbolic -o libhoard.so -ldl -lpthread ++LINUX_GCC_x86_64_COMPILE_DEBUG = $(CXX) $(CPPFLAGS) -g -W -Wconversion -Wall -I/usr/include/nptl -pipe -fPIC $(INCLUDES) -D_REENTRANT=1 -shared $(GNU_SRC) -Bsymbolic -o libhoard.so -ldl -lpthread + +-LINUX_GCC_x86_COMPILE_STATIC = g++ $(CPPFLAGS) -g -I/usr/include/nptl -static -pipe -finline-limit=20000 -finline-functions -DNDEBUG $(INCLUDES) -D_REENTRANT=1 -c $(GNU_SRC) ; ar cr libhoard.a libhoard.o ++LINUX_GCC_x86_COMPILE_STATIC = $(CXX) $(CPPFLAGS) -g -I/usr/include/nptl -static -pipe -finline-limit=20000 -finline-functions -DNDEBUG $(INCLUDES) -D_REENTRANT=1 -c $(GNU_SRC) ; ar cr libhoard.a libhoard.o + +-LINUX_GCC_x86_64_COMPILE_STATIC = g++ $(CPPFLAGS) -g -W -Wconversion -Wall -I/usr/include/nptl -static -pipe -fPIC -finline-limit=20000 -finline-functions -DNDEBUG $(INCLUDES) -D_REENTRANT=1 -shared -c $(GNU_SRC) -Bsymbolic ; ar cr libhoard.a libhoard.o ++LINUX_GCC_x86_64_COMPILE_STATIC $(CXX) $(CPPFLAGS) -g -W -Wconversion -Wall -I/usr/include/nptl -static -pipe -fPIC -finline-limit=20000 -finline-functions -DNDEBUG $(INCLUDES) -D_REENTRANT=1 -shared -c $(GNU_SRC) -Bsymbolic ; ar cr libhoard.a libhoard.o + +-LINUX_GCC_x86_COMPILE_DEBUG = g++ $(CPPFLAGS) -fPIC -fno-inline -I/usr/include/nptl -g -pipe $(INCLUDES) -D_REENTRANT=1 -shared $(GNU_SRC) -Bsymbolic -o libhoard.so -ldl -lpthread ++LINUX_GCC_x86_COMPILE_DEBUG $(CXX) $(CPPFLAGS) -fPIC -fno-inline -I/usr/include/nptl -g -pipe $(INCLUDES) -D_REENTRANT=1 -shared $(GNU_SRC) -Bsymbolic -o libhoard.so -ldl -lpthread + + SOLARIS_SUNW_SPARC_COMPILE_32_DEBUG = CC -dalign -xbuiltin=%all -fast -mt -g -xildoff -xthreadvar=dynamic -L/usr/lib/lwp -R/usr/lib/lwp -DNDEBUG $(INCLUDES) -D_REENTRANT=1 -G -PIC $(SUNW_SRC) Heap-Layers/wrappers/arch-specific/sparc-interchange.il -o libhoard_32.so -lthread -ldl -lCrun + -- GitLab From 3674daac256d9fc96b88bdb4117dfdabf63fa416 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Feb 2015 11:40:56 +0100 Subject: [PATCH 0655/1217] add easyconfig for jemalloc --- .../j/jemalloc/jemalloc-3.6.0-intel-2015a.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb diff --git a/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb b/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb new file mode 100644 index 0000000000..6777300bd6 --- /dev/null +++ b/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'jemalloc' +version = '3.6.0' + +homepage = 'http://www.canonware.com/jemalloc' +description = """jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and + scalable concurrency support.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://www.canonware.com/download/jemalloc/'] +sources = [SOURCE_TAR_BZ2] + +moduleclass = 'lib' -- GitLab From 4f39459cade9f2c1db2dc4835d407290c69fbffe Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Feb 2015 11:42:29 +0100 Subject: [PATCH 0656/1217] fix remark --- easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb b/easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb index c1298de331..38e2d6db59 100644 --- a/easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb +++ b/easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb @@ -10,6 +10,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} source_urls = ['https://github.com/emeryberger/Hoard/releases/download/%(version)s'] sources = ['Hoard-%(version)s-source.tar.gz'] + patches = ['Hoard-%(version_major)s.x_CXX.patch'] start_dir = 'src' -- GitLab From f6d1a8065cf1fe47cf01d3e828e67a3595835171 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Feb 2015 12:16:14 +0100 Subject: [PATCH 0657/1217] add custom sanity check in jemalloc easyconfig --- .../easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb b/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb index 6777300bd6..ac8c2523c3 100644 --- a/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb +++ b/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb @@ -12,4 +12,10 @@ toolchain = {'name': 'intel', 'version': '2015a'} source_urls = ['http://www.canonware.com/download/jemalloc/'] sources = [SOURCE_TAR_BZ2] +sanity_check_paths = { + 'files': ['bin/pprof', 'lib/libjemalloc.a', 'lib/libjemalloc_pic.a', 'lib/libjemalloc.so', + 'include/jemalloc/jemalloc.h'], + 'dirs': ['share'], +} + moduleclass = 'lib' -- GitLab From d9efa0a8d531052268ee41d1ffbae92ef92ccdf5 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 23 Feb 2015 13:25:17 +0100 Subject: [PATCH 0658/1217] arpack-ng for intel/2015a --- .../arpack-ng-3.2.0-intel-2015a-mt.eb | 23 +++++++++++++++++++ .../arpack-ng/arpack-ng-3.2.0-intel-2015a.eb | 22 ++++++++++++++++++ 2 files changed, 45 insertions(+) create mode 100644 easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a-mt.eb create mode 100644 easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a-mt.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a-mt.eb new file mode 100644 index 0000000000..995ad2d16f --- /dev/null +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a-mt.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'arpack-ng' +version = '3.2.0' +versionsuffix = '-mt' + +homepage = 'http://forge.scilab.org/index.php/p/arpack-ng/' +description = """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True, 'usempi': False} + +source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] +sources = ['%(version)s.tar.gz'] + +configopts = '--with-pic --with-blas="$LIBBLAS_MT" --with-lapack="$LIBLAPACK_MT"' + +sanity_check_paths = { + 'files': ["lib/libarpack.a", "lib/libarpack.so"], + 'dirs': [] +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb new file mode 100644 index 0000000000..a7d64515a1 --- /dev/null +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'arpack-ng' +version = '3.2.0' + +homepage = 'http://forge.scilab.org/index.php/p/arpack-ng/' +description = """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'opt': True, 'optarch': True, 'pic': True, 'usempi': True} + +source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] +sources = ['%(version)s.tar.gz'] + +configopts = '--with-pic --with-blas="$LIBBLAS_MT" --with-lapack="$LIBLAPACK_MT"' + +sanity_check_paths = { + 'files': ["lib/libarpack.a", "lib/libarpack.so"], + 'dirs': [] +} + +moduleclass = 'numlib' -- GitLab From dd87620ede22d5237e69fc92d4a85c4bf6c9ec9b Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 23 Feb 2015 13:28:04 +0100 Subject: [PATCH 0659/1217] arpack: fix mpi version --- .../easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb index a7d64515a1..3493bc2699 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb @@ -12,7 +12,7 @@ toolchainopts = {'opt': True, 'optarch': True, 'pic': True, 'usempi': True} source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] sources = ['%(version)s.tar.gz'] -configopts = '--with-pic --with-blas="$LIBBLAS_MT" --with-lapack="$LIBLAPACK_MT"' +configopts = '--with-pic --with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK"' sanity_check_paths = { 'files': ["lib/libarpack.a", "lib/libarpack.so"], -- GitLab From 21a8398c3d4529586635dea30b18feee28ee90d0 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 23 Feb 2015 14:21:51 +0100 Subject: [PATCH 0660/1217] Copy&Paste is a bitch --- .../easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a-mt.eb | 2 +- .../easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a-mt.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a-mt.eb index 995ad2d16f..5f89014f6e 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a-mt.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a-mt.eb @@ -7,7 +7,7 @@ versionsuffix = '-mt' homepage = 'http://forge.scilab.org/index.php/p/arpack-ng/' description = """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.""" -toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'opt': True, 'optarch': True, 'pic': True, 'usempi': False} source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb index 3493bc2699..9f6edb0eef 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb @@ -6,7 +6,7 @@ version = '3.2.0' homepage = 'http://forge.scilab.org/index.php/p/arpack-ng/' description = """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.""" -toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'opt': True, 'optarch': True, 'pic': True, 'usempi': True} source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] -- GitLab From 2a5491524d51e383b83240bb5e535ac4ffa9588f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Feb 2015 16:16:23 +0100 Subject: [PATCH 0661/1217] add easyconfig for Hadoop seagate variants with native libs --- easybuild/easyconfigs/c/CMake/CMake-3.1.3.eb | 22 ++++++++++++++++ .../Hadoop-2.4.0-seagate-722af1-native.eb | 26 +++++++++++++++++++ .../easyconfigs/p/protobuf/protobuf-2.5.0.eb | 19 ++++++++++++++ 3 files changed, 67 insertions(+) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.1.3.eb create mode 100644 easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb create mode 100644 easybuild/easyconfigs/p/protobuf/protobuf-2.5.0.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.1.3.eb b/easybuild/easyconfigs/c/CMake/CMake-3.1.3.eb new file mode 100644 index 0000000000..d2b515088f --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.1.3.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.1.3' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb new file mode 100644 index 0000000000..814e2f970f --- /dev/null +++ b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb @@ -0,0 +1,26 @@ +name = 'Hadoop' +version = '2.4.0' +commit = '722af1' +versionsuffix = '-seagate-%s-native' % commit + +homepage = 'https://github.com/Seagate/hadoop-on-lustre2' +description = """Hadoop MapReduce for Parallel File Systems as provided by Seagate""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['%s.tar.gz' % commit] +source_urls = ['https://github.com/Seagate/hadoop-on-lustre2/archive'] + +java = 'Java' +javaver = '1.7.0_40' + +builddependencies = [ + ('Maven', '3.2.3'), + ('protobuf', '2.5.0'), + ('CMake', '3.1.3'), +] +dependencies = [(java, javaver)] + +build_native_libs = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/protobuf/protobuf-2.5.0.eb b/easybuild/easyconfigs/p/protobuf/protobuf-2.5.0.eb new file mode 100644 index 0000000000..7a7091bb5e --- /dev/null +++ b/easybuild/easyconfigs/p/protobuf/protobuf-2.5.0.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'protobuf' +version = '2.5.0' + +homepage = 'https://code.google.com/p/protobuf/' +description = """Google Protocol Buffers""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GOOGLECODE_SOURCE] + +sanity_check_paths = { + 'files': ['bin/protoc'], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From 126cda77d3f0e951935669b128d35807ac1c39b9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Feb 2015 16:27:06 +0100 Subject: [PATCH 0662/1217] update to latest Java dep in Hadoop easyconfig --- .../Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb | 2 +- easybuild/easyconfigs/j/Java/Java-1.7.0_76.eb | 15 +++++++++++++++ 2 files changed, 16 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/j/Java/Java-1.7.0_76.eb diff --git a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb index 814e2f970f..3066cf90e5 100644 --- a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb +++ b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb @@ -12,7 +12,7 @@ sources = ['%s.tar.gz' % commit] source_urls = ['https://github.com/Seagate/hadoop-on-lustre2/archive'] java = 'Java' -javaver = '1.7.0_40' +javaver = '1.7.0_76' builddependencies = [ ('Maven', '3.2.3'), diff --git a/easybuild/easyconfigs/j/Java/Java-1.7.0_76.eb b/easybuild/easyconfigs/j/Java/Java-1.7.0_76.eb new file mode 100644 index 0000000000..7e3b9df3d0 --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.7.0_76.eb @@ -0,0 +1,15 @@ +name = 'Java' +version = '1.7.0_76' + +homepage = 'http://java.com/' +description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] + +moduleclass = 'lang' -- GitLab From 5efce5c1211a076d7188410b590d0fa701ea8fcf Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Feb 2015 16:39:07 +0100 Subject: [PATCH 0663/1217] add missing easyconfig for ncurses 5.9 with dummy toolchain --- easybuild/easyconfigs/n/ncurses/ncurses-5.9.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-5.9.eb diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9.eb new file mode 100644 index 0000000000..6ab79de61f --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9.eb @@ -0,0 +1,15 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' -- GitLab From 352e5db28d1ca8ad0527b63fb55c3e5bbfe5020c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Feb 2015 16:52:29 +0100 Subject: [PATCH 0664/1217] change moduleclass for Hadoop to 'tools' --- .../easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb index 3066cf90e5..1a2bc6a274 100644 --- a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb +++ b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb @@ -23,4 +23,4 @@ dependencies = [(java, javaver)] build_native_libs = True -moduleclass = 'devel' +moduleclass = 'tools' -- GitLab From 521153144fe0ae6326d76eae9a4ea808b33d1be2 Mon Sep 17 00:00:00 2001 From: "Dominik L. Borkowski" Date: Mon, 23 Feb 2015 21:39:52 -0500 Subject: [PATCH 0665/1217] add SLES11 package to openssl devel os dependency A lot of existing easyconfigs used 'openssl-devel' and 'libssl-dev' under osdependencies to indicate the need to have development files for openssl. SLES 11 uses 'libopenssl-devel', so we add that as a third option. --- easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2014b.eb | 2 +- easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2015a.eb | 2 +- easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb | 2 +- easybuild/easyconfigs/c/cURL/cURL-7.40.0-foss-2015a.eb | 2 +- easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb | 2 +- .../easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb | 2 +- .../p/Python/Python-2.5.6-goalf-1.1.0-no-OFED-bare.eb | 2 +- .../p/Python/Python-2.5.6-gompi-1.4.12-no-OFED-bare.eb | 2 +- .../easyconfigs/p/Python/Python-2.5.6-goolf-1.4.10-bare.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-4.0.6-bare.eb | 2 +- .../easyconfigs/p/Python/Python-2.5.6-ictce-4.1.13-bare.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.2.0-bare.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.3.0-bare.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb | 2 +- .../easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb | 2 +- .../easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb | 2 +- .../easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb | 2 +- .../easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb | 2 +- .../easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb | 2 +- easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb | 2 +- 56 files changed, 56 insertions(+), 56 deletions(-) diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2014b.eb b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2014b.eb index 3b257ff22b..90466f7075 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2014b.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2014b.eb @@ -17,7 +17,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] #dependencies = [('OpenSSL', '1.0.1i')] # OS dependency should be preferred for security reasons -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2015a.eb index 044a3da83e..82fe8da72a 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2015a.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2015a.eb @@ -17,7 +17,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] #dependencies = [('OpenSSL', '1.0.1i')] # OS dependency should be preferred for security reasons -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb index 7009ac53e5..c62cc48307 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb @@ -18,7 +18,7 @@ source_urls = ['http://curl.haxx.se/download/'] # dependencies = [('OpenSSL', '1.0.1k')] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # configopts = "--with-ssl=$EBROOTOPENSSL" diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-foss-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-foss-2015a.eb index a8c7d1b972..f28780066a 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-foss-2015a.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-foss-2015a.eb @@ -16,7 +16,7 @@ toolchain = {'name': 'foss', 'version': '2015a'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] sanity_check_paths = { 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb index 7a5f70d693..c9c8c7db48 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb @@ -18,7 +18,7 @@ source_urls = ['http://curl.haxx.se/download/'] # dependencies = [('OpenSSL', '1.0.1k')] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # configopts = "--with-ssl=$EBROOTOPENSSL" diff --git a/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb b/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb index 39773d3294..b14d94df84 100644 --- a/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb +++ b/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'intel', 'version': '2014b'} -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] dependencies = [ ('libevent', '2.0.21'), diff --git a/easybuild/easyconfigs/p/Python/Python-2.5.6-goalf-1.1.0-no-OFED-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.5.6-goalf-1.1.0-no-OFED-bare.eb index 279bdd8c99..a0f450f70f 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.5.6-goalf-1.1.0-no-OFED-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.5.6-goalf-1.1.0-no-OFED-bare.eb @@ -19,6 +19,6 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.5.6-gompi-1.4.12-no-OFED-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.5.6-gompi-1.4.12-no-OFED-bare.eb index f9f346f7bc..53b6064132 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.5.6-gompi-1.4.12-no-OFED-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.5.6-gompi-1.4.12-no-OFED-bare.eb @@ -19,6 +19,6 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.5.6-goolf-1.4.10-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.5.6-goolf-1.4.10-bare.eb index 66cb466a25..ed1944c3f2 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.5.6-goolf-1.4.10-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.5.6-goolf-1.4.10-bare.eb @@ -19,6 +19,6 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-4.0.6-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-4.0.6-bare.eb index 781b45ed3f..d9118da106 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-4.0.6-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-4.0.6-bare.eb @@ -21,6 +21,6 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-4.1.13-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-4.1.13-bare.eb index c8bc196270..da9bd1c2a4 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-4.1.13-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-4.1.13-bare.eb @@ -21,6 +21,6 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.2.0-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.2.0-bare.eb index 79512f826c..ae0e9d0e08 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.2.0-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.2.0-bare.eb @@ -19,6 +19,6 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.3.0-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.3.0-bare.eb index f949db90c2..6d976f526f 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.3.0-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.3.0-bare.eb @@ -19,6 +19,6 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb index 09f3055b4f..1634c92386 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb index 42193d47f3..9da359d558 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb index 1afb913fc7..1f7939f4ae 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb index e06519fa69..ad3be578b7 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb index d2a397a75d..87842fb428 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb index 911d601c84..2831a2cc23 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb index fc55e54136..b776fb0b02 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb index ddb8cca034..78603dc07b 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb index 30918d38a9..ed4e0133ca 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb index 4134226fe7..05b7c9748b 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb index 3674e8503a..aa705e3789 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb @@ -24,7 +24,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb index c79f20595e..5ff8d51fe5 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb @@ -24,7 +24,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb index 35b2b5b200..b5fe2d5275 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb index 7aebaedcf4..811713df94 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb index 664ee1f1a8..130b9064da 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb @@ -24,7 +24,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb index bc49ef2fca..3b99a9a692 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb @@ -25,7 +25,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb index 0c368fb252..b1cf4f2c33 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb index 9bb670b9f9..61bbf93bff 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb index 50f7775759..4702e95c66 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb @@ -25,7 +25,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb index 2ddde79dbd..6b7e21c3ad 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb @@ -25,7 +25,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb index f1a9ed5672..50bb8eaa10 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb @@ -25,7 +25,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb index 1fba318bda..d5bc39c85f 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb @@ -26,7 +26,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb index f9fa5f9c80..ab16192e19 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb index d5ea67a210..8450ef1ade 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb @@ -25,7 +25,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb index ad9bec4d24..84e3eb01be 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb @@ -25,7 +25,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb index 727caedb4d..8fc41a9000 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb index 7c555315ab..e1f4863c86 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb @@ -28,7 +28,7 @@ dependencies = [ # ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! # Version updated 08/JULY/2014 diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb index 606015815c..37561dbbd7 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb @@ -25,7 +25,7 @@ dependencies = [ # ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! # Version updated 08/JULY/2014 diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb index 8f5509ad1f..ad901ece9f 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb @@ -97,6 +97,6 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb index 3ee92cdc84..0c37e9ea68 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb @@ -21,7 +21,7 @@ dependencies = [ # nice to have an up to date openssl for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # bare installation: no extensions included exts_list = [] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb index ddcd75ee83..ee34812203 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb @@ -23,7 +23,7 @@ dependencies = [ # nice to have an up to date openssl for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! # package versions updated Jan 19th 2015 diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb index 583d5df7db..2d2b758eb9 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb @@ -19,6 +19,6 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb index 295a215baa..51b20dc349 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb @@ -23,7 +23,7 @@ dependencies = [ # nice to have an up to date openssl for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! # package versions updated Jan 19th 2015 diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb index d2a6be35eb..b906a68722 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb @@ -21,7 +21,7 @@ dependencies = [ # nice to have an up to date openssl for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # bare installation: no extensions included exts_list = [] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb index f686a45b8c..9107501405 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb @@ -23,7 +23,7 @@ dependencies = [ # nice to have an up to date openssl for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! # package versions updated Jan 19th 2015 diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb index 5908968a8a..ff366c2d52 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb index f3672941f6..1a46862919 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb index 46621b251d..bfaa166f08 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb @@ -24,7 +24,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb index 202bdb8ade..92a41bf7e7 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb index ccb66beda5..c462546fe3 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb @@ -22,7 +22,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb index b8c6c3ff36..51dd82cdf9 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb @@ -24,7 +24,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb index 9f533cb4ea..f1f4f3af6b 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb @@ -24,7 +24,7 @@ dependencies = [ # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb index aa223ede51..648a65cc92 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb @@ -25,7 +25,7 @@ dependencies = [ # ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! # Version updated 08/JULY/2014 -- GitLab From 16827a044da6d84ab2e2e5ba550b52a52a9b2573 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 24 Feb 2015 14:10:37 +0100 Subject: [PATCH 0666/1217] added perl as a build dependency for parallel --- .../p/Parallel/Parallel-20141122-GCC-4.9.2.eb | 4 ++++ .../parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb | 10 +++++++--- .../p/parallel/parallel-20130122-goolf-1.4.10.eb | 10 +++++++--- .../p/parallel/parallel-20130122-ictce-4.0.6.eb | 10 +++++++--- .../p/parallel/parallel-20130122-ictce-5.3.0.eb | 11 +++++++---- 5 files changed, 32 insertions(+), 13 deletions(-) diff --git a/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb b/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb index 370f2c2b26..d9ace2eab9 100644 --- a/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb @@ -11,6 +11,10 @@ source_urls = ['http://ftp.gnu.org/gnu/parallel'] toolchain = {'name': 'GCC', 'version': '4.9.2'} +builddependencies = [ + ('Perl', '5.20.1', '-bare'), # required for pod2man +] + sanity_check_paths = { 'files': ['bin/parallel'], 'dirs': [] diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb index cfd2944d18..775324e831 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb @@ -23,9 +23,13 @@ source_urls = [GNU_SOURCE] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} +builddependencies = [ + ('Perl', '5.20.1', '-bare'), # required for pod2man +] + sanity_check_paths = { - 'files': ['bin/parallel'], - 'dirs': [] - } + 'files': ['bin/parallel'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb index dc28a0e211..2fbe84589d 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb @@ -21,11 +21,15 @@ description = """parallel: Build and execute shell commands in parallel""" sources = [SOURCE_TAR_BZ2] source_urls = [GNU_SOURCE] +builddependencies = [ + ('Perl', '5.20.1', '-bare'), # required for pod2man +] + toolchain = {'name': 'goolf', 'version': '1.4.10'} sanity_check_paths = { - 'files': ['bin/parallel'], - 'dirs': [] - } + 'files': ['bin/parallel'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb index 355352cf8e..14b3713165 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb @@ -23,9 +23,13 @@ source_urls = [GNU_SOURCE] toolchain = {'version': '4.0.6', 'name': 'ictce'} +builddependencies = [ + ('Perl', '5.20.1', '-bare'), # required for pod2man +] + sanity_check_paths = { - 'files': ['bin/parallel'], - 'dirs': [] - } + 'files': ['bin/parallel'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb index a00d8552bf..a8c81fe5d4 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb @@ -21,12 +21,15 @@ description = """parallel: Build and execute shell commands in parallel""" sources = [SOURCE_TAR_BZ2] source_urls = [GNU_SOURCE] - toolchain = {'name': 'ictce', 'version': '5.3.0'} +builddependencies = [ + ('Perl', '5.20.1', '-bare'), # required for pod2man +] + sanity_check_paths = { - 'files': ['bin/parallel'], - 'dirs': [] - } + 'files': ['bin/parallel'], + 'dirs': [] +} moduleclass = 'tools' -- GitLab From 4b09258328a23b65c862e24965a962a1cba811aa Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 24 Feb 2015 14:31:37 +0100 Subject: [PATCH 0667/1217] moved Parallel to parallel --- .../parallel-20141122-GCC-4.9.2.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/p/{Parallel/Parallel-20141122-GCC-4.9.2.eb => parallel/parallel-20141122-GCC-4.9.2.eb} (100%) diff --git a/easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb b/easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb similarity index 100% rename from easybuild/easyconfigs/p/Parallel/Parallel-20141122-GCC-4.9.2.eb rename to easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb -- GitLab From 16f4d473216c701109a9e07b43c5f68dae048961 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 24 Feb 2015 15:20:36 +0100 Subject: [PATCH 0668/1217] actually, parallel is a perl script, so it's more then a build dependency --- .../p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb | 2 +- .../easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb | 4 ++-- .../easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb | 4 ++-- .../easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb | 4 ++-- .../easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb | 4 ++-- 5 files changed, 9 insertions(+), 9 deletions(-) diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb index 775324e831..07a89393a8 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb @@ -23,7 +23,7 @@ source_urls = [GNU_SOURCE] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} -builddependencies = [ +dependencies = [ ('Perl', '5.20.1', '-bare'), # required for pod2man ] diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb index 2fbe84589d..978e1f0baf 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb @@ -21,8 +21,8 @@ description = """parallel: Build and execute shell commands in parallel""" sources = [SOURCE_TAR_BZ2] source_urls = [GNU_SOURCE] -builddependencies = [ - ('Perl', '5.20.1', '-bare'), # required for pod2man +dependencies = [ + ('Perl', '5.20.1', '-bare'), ] toolchain = {'name': 'goolf', 'version': '1.4.10'} diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb index 14b3713165..73c8501eb4 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb @@ -23,8 +23,8 @@ source_urls = [GNU_SOURCE] toolchain = {'version': '4.0.6', 'name': 'ictce'} -builddependencies = [ - ('Perl', '5.20.1', '-bare'), # required for pod2man +dependencies = [ + ('Perl', '5.20.1', '-bare'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb index a8c81fe5d4..1e2ee3feeb 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb @@ -23,8 +23,8 @@ source_urls = [GNU_SOURCE] toolchain = {'name': 'ictce', 'version': '5.3.0'} -builddependencies = [ - ('Perl', '5.20.1', '-bare'), # required for pod2man +dependencies = [ + ('Perl', '5.20.1', '-bare'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb b/easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb index d9ace2eab9..58e05fec2b 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb @@ -11,8 +11,8 @@ source_urls = ['http://ftp.gnu.org/gnu/parallel'] toolchain = {'name': 'GCC', 'version': '4.9.2'} -builddependencies = [ - ('Perl', '5.20.1', '-bare'), # required for pod2man +dependencies = [ + ('Perl', '5.20.1', '-bare'), ] sanity_check_paths = { -- GitLab From d4ad7234491642639a8f41259dcaf0f5a9d2ae58 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Wed, 25 Feb 2015 11:54:22 +0100 Subject: [PATCH 0669/1217] changed perl version to older perl where you had one, left older (broken?) easyconfigs where we have no perl for the toolchain the way there were --- .../p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb | 4 ---- .../p/parallel/parallel-20130122-goolf-1.4.10.eb | 2 +- .../p/parallel/parallel-20130122-ictce-4.0.6.eb | 4 ---- .../p/parallel/parallel-20130122-ictce-5.3.0.eb | 2 +- .../easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb | 7 ++++--- 5 files changed, 6 insertions(+), 13 deletions(-) diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb index 07a89393a8..ff68a75587 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb @@ -23,10 +23,6 @@ source_urls = [GNU_SOURCE] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} -dependencies = [ - ('Perl', '5.20.1', '-bare'), # required for pod2man -] - sanity_check_paths = { 'files': ['bin/parallel'], 'dirs': [] diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb index 978e1f0baf..59543e9cd3 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb @@ -22,7 +22,7 @@ sources = [SOURCE_TAR_BZ2] source_urls = [GNU_SOURCE] dependencies = [ - ('Perl', '5.20.1', '-bare'), + ('Perl', '5.16.3', '-bare'), ] toolchain = {'name': 'goolf', 'version': '1.4.10'} diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb index 73c8501eb4..6286cb7ed1 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb @@ -23,10 +23,6 @@ source_urls = [GNU_SOURCE] toolchain = {'version': '4.0.6', 'name': 'ictce'} -dependencies = [ - ('Perl', '5.20.1', '-bare'), -] - sanity_check_paths = { 'files': ['bin/parallel'], 'dirs': [] diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb index 1e2ee3feeb..268bcb3414 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb @@ -24,7 +24,7 @@ source_urls = [GNU_SOURCE] toolchain = {'name': 'ictce', 'version': '5.3.0'} dependencies = [ - ('Perl', '5.20.1', '-bare'), + ('Perl', '5.16.3', '-bare'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb b/easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb index 58e05fec2b..65d2e1f27b 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb @@ -11,9 +11,10 @@ source_urls = ['http://ftp.gnu.org/gnu/parallel'] toolchain = {'name': 'GCC', 'version': '4.9.2'} -dependencies = [ - ('Perl', '5.20.1', '-bare'), -] +# warning, parallel is a perl script and should depend on perl +# dependencies = [ +# ('Perl', '5.20.1', '-bare'), +#] sanity_check_paths = { 'files': ['bin/parallel'], -- GitLab From 8b28742fa7d4d577b9bdbdeb4527b37f9c1b7549 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Wed, 25 Feb 2015 12:14:20 +0100 Subject: [PATCH 0670/1217] parallel has lowercase p --- easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb b/easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb index 65d2e1f27b..e9be3039e9 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb @@ -1,6 +1,6 @@ easyblock = 'ConfigureMake' -name = 'Parallel' +name = 'parallel' version = '20141122' homepage = 'http://savannah.gnu.org/projects/parallel/' -- GitLab From 5d81fce68288b804bb5c576e1ea8d8c3ff13dcf9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 25 Feb 2015 17:08:04 +0100 Subject: [PATCH 0671/1217] add missing Perl deps for parallel easyconfigs --- .../Perl-5.16.3-goalf-1.1.0-no-OFED-bare.eb | 16 ++++++++++++++++ .../p/Perl/Perl-5.16.3-goolf-1.4.10-bare.eb | 4 ++-- .../p/Perl/Perl-5.16.3-ictce-4.0.6-bare.eb | 18 ++++++++++++++++++ .../p/Perl/Perl-5.16.3-ictce-4.1.13-bare.eb | 6 ++++-- .../p/Perl/Perl-5.20.1-GCC-4.8.2-bare.eb | 2 ++ .../p/Perl/Perl-5.20.1-GCC-4.9.2-bare.eb | 19 +++++++++++++++++++ .../parallel-20130122-goalf-1.1.0-no-OFED.eb | 6 +++++- .../parallel-20130122-goolf-1.4.10.eb | 4 ++-- .../parallel/parallel-20130122-ictce-4.0.6.eb | 6 +++++- .../parallel/parallel-20130122-ictce-5.3.0.eb | 4 ++-- .../p/parallel/parallel-20141122-GCC-4.9.2.eb | 11 +++++------ 11 files changed, 80 insertions(+), 16 deletions(-) create mode 100644 easybuild/easyconfigs/p/Perl/Perl-5.16.3-goalf-1.1.0-no-OFED-bare.eb create mode 100644 easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-4.0.6-bare.eb create mode 100644 easybuild/easyconfigs/p/Perl/Perl-5.20.1-GCC-4.9.2-bare.eb diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.16.3-goalf-1.1.0-no-OFED-bare.eb b/easybuild/easyconfigs/p/Perl/Perl-5.16.3-goalf-1.1.0-no-OFED-bare.eb new file mode 100644 index 0000000000..c5a2760a68 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.16.3-goalf-1.1.0-no-OFED-bare.eb @@ -0,0 +1,16 @@ +name = 'Perl' +version = '5.16.3' +versionsuffix = "-bare" + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +runtest = 'test' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.16.3-goolf-1.4.10-bare.eb b/easybuild/easyconfigs/p/Perl/Perl-5.16.3-goolf-1.4.10-bare.eb index af7ea2a52c..b0a376e62e 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.16.3-goolf-1.4.10-bare.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.16.3-goolf-1.4.10-bare.eb @@ -1,5 +1,6 @@ name = 'Perl' version = '5.16.3' +versionsuffix = "-bare" homepage = 'http://www.perl.org/' description = """Larry Wall's Practical Extraction and Report Language""" @@ -9,8 +10,7 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = ['http://www.cpan.org/src/5.0'] sources = [SOURCELOWER_TAR_GZ] -runtest = 'test' -versionsuffix = "-bare" +runtest = 'test' moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-4.0.6-bare.eb b/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-4.0.6-bare.eb new file mode 100644 index 0000000000..9e108b5b00 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-4.0.6-bare.eb @@ -0,0 +1,18 @@ +name = 'Perl' +version = '5.16.3' +versionsuffix = "-bare" + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'ictce', 'version': '4.0.6'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['exitcode_error.patch'] + +runtest = 'test' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-4.1.13-bare.eb b/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-4.1.13-bare.eb index 0c3f3f991c..63c4aa7e73 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-4.1.13-bare.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-4.1.13-bare.eb @@ -1,16 +1,18 @@ name = 'Perl' version = '5.16.3' +versionsuffix = "-bare" homepage = 'http://www.perl.org/' description = """Larry Wall's Practical Extraction and Report Language""" + toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'optarch': True, 'pic': True} source_urls = ['http://www.cpan.org/src/5.0'] sources = [SOURCELOWER_TAR_GZ] + patches = ['exitcode_error.patch'] -runtest = 'test' -versionsuffix = "-bare" +runtest = 'test' moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.1-GCC-4.8.2-bare.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.1-GCC-4.8.2-bare.eb index df13383ba5..5d0f51129b 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.20.1-GCC-4.8.2-bare.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.1-GCC-4.8.2-bare.eb @@ -14,4 +14,6 @@ sources = [SOURCELOWER_TAR_GZ] # bare, no extensions exts_list = [] +runtest = 'test' + moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.1-GCC-4.9.2-bare.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.1-GCC-4.9.2-bare.eb new file mode 100644 index 0000000000..331ab4d45f --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.1-GCC-4.9.2-bare.eb @@ -0,0 +1,19 @@ +name = 'Perl' +version = '5.20.1' +versionsuffix = '-bare' + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +# bare, no extensions +exts_list = [] + +runtest = 'test' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb index ff68a75587..3804c6ccaa 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goalf-1.1.0-no-OFED.eb @@ -18,10 +18,14 @@ version = '20130122' homepage = 'http://savannah.gnu.org/projects/parallel/' description = """parallel: Build and execute shell commands in parallel""" +toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} + sources = [SOURCE_TAR_BZ2] source_urls = [GNU_SOURCE] -toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} +dependencies = [ + ('Perl', '5.16.3', '-bare'), +] sanity_check_paths = { 'files': ['bin/parallel'], diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb index 59543e9cd3..3810b2de94 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-goolf-1.4.10.eb @@ -18,6 +18,8 @@ version = '20130122' homepage = 'http://savannah.gnu.org/projects/parallel/' description = """parallel: Build and execute shell commands in parallel""" +toolchain = {'name': 'goolf', 'version': '1.4.10'} + sources = [SOURCE_TAR_BZ2] source_urls = [GNU_SOURCE] @@ -25,8 +27,6 @@ dependencies = [ ('Perl', '5.16.3', '-bare'), ] -toolchain = {'name': 'goolf', 'version': '1.4.10'} - sanity_check_paths = { 'files': ['bin/parallel'], 'dirs': [] diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb index 6286cb7ed1..df8ba6abaf 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb @@ -18,10 +18,14 @@ version = '20130122' homepage = 'http://savannah.gnu.org/projects/parallel/' description = """parallel: Build and execute shell commands in parallel""" +toolchain = {'version': '4.0.6', 'name': 'ictce'} + sources = [SOURCE_TAR_BZ2] source_urls = [GNU_SOURCE] -toolchain = {'version': '4.0.6', 'name': 'ictce'} +dependencies = [ + ('Perl', '5.16.3', '-bare'), +] sanity_check_paths = { 'files': ['bin/parallel'], diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb index 268bcb3414..fc4fbe41bc 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-5.3.0.eb @@ -18,11 +18,11 @@ version = '20130122' homepage = 'http://savannah.gnu.org/projects/parallel/' description = """parallel: Build and execute shell commands in parallel""" +toolchain = {'name': 'ictce', 'version': '5.3.0'} + sources = [SOURCE_TAR_BZ2] source_urls = [GNU_SOURCE] -toolchain = {'name': 'ictce', 'version': '5.3.0'} - dependencies = [ ('Perl', '5.16.3', '-bare'), ] diff --git a/easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb b/easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb index e9be3039e9..87af6fceee 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20141122-GCC-4.9.2.eb @@ -6,15 +6,14 @@ version = '20141122' homepage = 'http://savannah.gnu.org/projects/parallel/' description = """parallel: Build and execute shell commands in parallel""" +toolchain = {'name': 'GCC', 'version': '4.9.2'} + sources = [SOURCELOWER_TAR_BZ2] source_urls = ['http://ftp.gnu.org/gnu/parallel'] -toolchain = {'name': 'GCC', 'version': '4.9.2'} - -# warning, parallel is a perl script and should depend on perl -# dependencies = [ -# ('Perl', '5.20.1', '-bare'), -#] +dependencies = [ + ('Perl', '5.20.1', '-bare'), +] sanity_check_paths = { 'files': ['bin/parallel'], -- GitLab From 4c9dff5e212778d7e2482e7b09edb044c6c8f6f4 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 26 Feb 2015 20:46:53 +0100 Subject: [PATCH 0672/1217] Added PSI4 git rev 3815c4672b2 --- .../PSI/PSI-4.0b6-3815c4672b2-fix-cmake.patch | 115 ++++++++++++++++++ .../PSI-4.0b6-3815c4672b2-intel-2015a-mt.eb | 29 +++++ 2 files changed, 144 insertions(+) create mode 100644 easybuild/easyconfigs/p/PSI/PSI-4.0b6-3815c4672b2-fix-cmake.patch create mode 100644 easybuild/easyconfigs/p/PSI/PSI-4.0b6-3815c4672b2-intel-2015a-mt.eb diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-3815c4672b2-fix-cmake.patch b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-3815c4672b2-fix-cmake.patch new file mode 100644 index 0000000000..c756debf48 --- /dev/null +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-3815c4672b2-fix-cmake.patch @@ -0,0 +1,115 @@ +# fixes the order in which libs get linked in the final executable +# if the order is wrong, you will get linking errors +diff -ur psi4public-3815c4672b20557818d653694ff2cb5c78819708.org/src/lib/libPsiUtil/CMakeLists.txt psi4public-3815c4672b20557818d653694ff2cb5c78819708/src/lib/libPsiUtil/CMakeLists.txt +--- psi4public-3815c4672b20557818d653694ff2cb5c78819708.org/src/lib/libPsiUtil/CMakeLists.txt 2015-02-18 19:36:31.000000000 +0100 ++++ psi4public-3815c4672b20557818d653694ff2cb5c78819708/src/lib/libPsiUtil/CMakeLists.txt 2015-02-26 10:36:56.000000000 +0100 +@@ -1,21 +1,41 @@ +-set(SRC ProgressBar.h +- PsiMap.h +- PsiRdmNumGen.h +- PythonFxn.h +- Timer.h +- Units.h +- AtomicData.h +- Implementations/UnitsGuts.hh +- Implementations/PrefixConverter.cc +- Implementations/Timer.cc +- Implementations/BaseUnitConverter.cc +- Implementations/PythonFxnGuts.cc +- Implementations/AtomicData.cc +- Implementations/ProgressBar.cc +-) +-add_library(PsiUtil ${SRC}) ++set(headers_list "") ++# List of headers ++list(APPEND ProgressBar.h PsiMap.h PsiRdmNumGen.h PythonFxn.h Timer.h Units.h AtomicData.h Implementations/UnitsGuts.hh ) ++ ++# If you want to remove some headers specify them explictly here ++if(DEVELOPMENT_CODE) ++ list(REMOVE_ITEM headers_list "") ++else() ++ list(REMOVE_ITEM headers_list "") ++endif() ++# Sort alphabetically ++list(SORT headers_list) ++ ++set(sources_list "") ++# List of sources ++list(APPEND sources_list Implementations/PrefixConverter.cc Implementations/Timer.cc Implementations/BaseUnitConverter.cc Implementations/PythonFxnGuts.cc Implementations/AtomicData.cc Implementations/ProgressBar.cc ) ++ ++# If you want to remove some sources specify them explictly here ++if(DEVELOPMENT_CODE) ++ list(REMOVE_ITEM sources_list "") ++else() ++ list(REMOVE_ITEM sources_list "") ++endif() ++ ++# Write list of files to be passed to cloc for counting lines of code. ++# Only files that are actually compiled are counted. ++set(to_count "${sources_list}" "${headers_list}") ++write_to_cloc_list("${to_count}") ++ ++# Build static library ++add_library(PsiUtil STATIC ${sources_list}) ++# Specify dependencies for the library (if any) + add_dependencies(PsiUtil parallel2) +-include_directories(libparallel2) ++set(libs_to_merge PsiUtil ${libs_to_merge} PARENT_SCOPE) + if(BUILD_CUSTOM_BOOST) + add_dependencies(PsiUtil custom_boost) + endif() ++install(TARGETS PsiUtil ARCHIVE DESTINATION lib) ++ ++# Sets install directory for all the headers in the list ++install_list_FILES("${headers_list}" include/libPsiUtil) +diff --git a/CMakeLists.txt b/CMakeLists.txt +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -203,8 +203,12 @@ if(NOT LIBINT_OPT_AM) + set(LIBINT_OPT_AM 5) + endif() + ++get_property(dirs DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} PROPERTY INCLUDE_DIRECTORIES) ++set(include_dir_externals ${dirs}) ++ + # Psi4-specific includes and libraries + set(CMAKE_INCLUDE_CURRENT_DIR ON) ++ + include_directories( + ${PROJECT_BINARY_DIR}/include + ${PROJECT_SOURCE_DIR}/include +@@ -225,7 +229,8 @@ set(PSILIB mints_wrapper dfmp2 dfocc scf ccenergy ccsort psimrcc transqt2 + cchbar cclambda ccdensity transqt ccresponse detci occ mrcc fnocc + cceom adc thermo functional disp thce 3index deriv_wrapper optking + findif mints trans dpd chkpt iwl psio qt ciomr options moinfo psi4util +- stable deriv scfgrad int diis plugin parallel parallel2 babel frag efp_solver efp) ++ stable deriv scfgrad int diis plugin parallel parallel2 babel frag efp_solver efp ++ parallel parallel2 PsiUtil) + + # PCMSolver + if(ENABLE_PCMSOLVER) +@@ -303,9 +308,11 @@ add_subdirectory(lib) + # Handle creation of Makefile for plugins + get_property(dirs DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} PROPERTY INCLUDE_DIRECTORIES) + get_property(defs DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} PROPERTY COMPILE_DEFINITIONS) +-foreach(dir ${dirs}) ++foreach(dir ${include_dir_externals}) + set(PLUGIN_INCLUDE_DIRECTORIES "-I${dir} ${PLUGIN_INCLUDE_DIRECTORIES}") + endforeach() ++set(PLUGIN_INCLUDE_DIRECTORIES "-I$ENV{PSI_SRC_INSTALL_DIR}/include -I$ENV{PSI_SRC_INSTALL_DIR}/src/lib/ -I$ENV{PSI_OBJ_INSTALL_DIR}/include -I$ENV{PSI_OBJ_INSTALL_DIR}/src/lib/ ${PLUGIN_INCLUDE_DIRECTORIES}") ++ + foreach(def ${defs}) + set(PLUGIN_DEFINES "-D${def} ${PLUGIN_DEFINES}") + endforeach() +diff --git a/include/psiconfig.h.cmake.in b/include/psiconfig.h.cmake.in +--- a/include/psiconfig.h.cmake.in ++++ b/include/psiconfig.h.cmake.in +@@ -20,7 +20,7 @@ + #define PLUGIN_DEFINES "@PLUGIN_DEFINES@" + #define PLUGIN_FLAGS "@CXX_FLAGS_PLUGIN@" + #define PLUGIN_INCLUDES "@PLUGIN_INCLUDE_DIRECTORIES@" +-#define PLUGIN_OBJDIR "@PROJECT_BINARY_DIR@" ++#define PLUGIN_OBJDIR "@CMAKE_INSTALL_PREFIX@/obj" + + /* The PSI4 Datadir */ + #define INSTALLEDPSIDATADIR "@CMAKE_INSTALL_PREFIX@/share/psi" diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-3815c4672b2-intel-2015a-mt.eb b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-3815c4672b2-intel-2015a-mt.eb new file mode 100644 index 0000000000..3cdeb9cb5e --- /dev/null +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-3815c4672b2-intel-2015a-mt.eb @@ -0,0 +1,29 @@ +name = 'PSI' +commit = '3815c4672b2' +version = '4.0b6-%s' % commit +versionsuffix = '-mt' + +homepage = 'http://www.psicode.org/' +description = """PSI4 is an open-source suite of ab initio quantum chemistry programs designed for + efficient, high-accuracy simulations of a variety of molecular properties. We can routinely perform + computations with more than 2500 basis functions running serially or in parallel.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'usempi': False} + +source_urls = ['https://github.com/psi4/psi4public/archive/'] +sources = ['%s.tar.gz' % commit] + +patches = ['PSI-%(version)s-fix-cmake.patch'] + +python = 'Python' +pyver = '2.7.9' + +dependencies = [ + (python, pyver), + ('Boost', '1.57.0', '-%s-%s' % (python, pyver)), +] + +builddependencies = [('CMake', '3.1.3', '', ('GCC', '4.9.2'))] + +moduleclass = 'chem' -- GitLab From 958518448e8bccfaea7f72630a19e96106a4da50 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 26 Feb 2015 21:01:47 +0100 Subject: [PATCH 0673/1217] CMake 3.1.3 --- .../c/CMake/CMake-3.1.3-GCC-4.9.2.eb | 22 +++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.1.3-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.1.3-GCC-4.9.2.eb b/easybuild/easyconfigs/c/CMake/CMake-3.1.3-GCC-4.9.2.eb new file mode 100644 index 0000000000..674ad2c737 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.1.3-GCC-4.9.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.1.3' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From c1454f5a5400940e40bd0a5bd9235b84ca8c2236 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 26 Feb 2015 21:36:06 +0100 Subject: [PATCH 0674/1217] Added patch for zlib to detect icc --- .../easyconfigs/z/zlib/zlib-detected-icc.patch | 13 +++++++++++++ 1 file changed, 13 insertions(+) create mode 100644 easybuild/easyconfigs/z/zlib/zlib-detected-icc.patch diff --git a/easybuild/easyconfigs/z/zlib/zlib-detected-icc.patch b/easybuild/easyconfigs/z/zlib/zlib-detected-icc.patch new file mode 100644 index 0000000000..7fc52f886b --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-detected-icc.patch @@ -0,0 +1,13 @@ +# the configure script doesn't know that icc is equivalent +# with gcc +--- configure.orig 2015-02-26 21:32:25.239440052 +0100 ++++ configure 2015-02-26 21:31:53.238819720 +0100 +@@ -100,7 +100,7 @@ + cflags=${CFLAGS-"-O3"} + # to force the asm version use: CFLAGS="-O3 -DASMV" ./configure + case "$cc" in +- *gcc*) gcc=1 ;; ++ *gcc* | *icc* ) gcc=1 ;; + esac + + if test "$gcc" -eq 1 && ($cc -c $cflags $test.c) 2>/dev/null; then -- GitLab From f7b8d576a70e0c5da1379141326d00b272e70d70 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 26 Feb 2015 21:38:44 +0100 Subject: [PATCH 0675/1217] Add icc patch to selected zlib versions --- easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb | 3 ++- easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb | 2 ++ easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb | 2 ++ 7 files changed, 14 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb index 8eedf49cf6..d733aaf922 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb @@ -14,6 +14,8 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] +patches = ['zlib-detected-icc.patch'] + sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb index 1bcd57dece..03bd01986c 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb @@ -14,6 +14,8 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] +patches = ['zlib-detected-icc.patch'] + sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb index 4a778d2bba..b90ca21c08 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb @@ -14,6 +14,8 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] +patches = ['zlib-detected-icc.patch'] + sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb index 46d721cc9d..e6c3a85399 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb @@ -8,13 +8,14 @@ description = """zlib is designed to be a free, general-purpose, legally unencum not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.""" - toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] +patches = ['zlib-detected-icc.patch'] + sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb index 2135132db6..ba51d59fe5 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb @@ -14,6 +14,8 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] +patches = ['zlib-detected-icc.patch'] + sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb index 719603c67b..57c8954b85 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb @@ -14,6 +14,8 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] +patches = ['zlib-detected-icc.patch'] + sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb index 8f93afc07c..e130029888 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb @@ -14,6 +14,8 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] +patches = ['zlib-detected-icc.patch'] + sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], -- GitLab From 475aa59e21dfc8abafe06a9ccf2a043a1f207d76 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 26 Feb 2015 21:47:17 +0100 Subject: [PATCH 0676/1217] Added and moved patch for zlib --- ...etected-icc.patch => zlib-1.2.5-detected-icc.patch} | 0 .../easyconfigs/z/zlib/zlib-1.2.7-detected-icc.patch | 10 ++++++++++ 2 files changed, 10 insertions(+) rename easybuild/easyconfigs/z/zlib/{zlib-detected-icc.patch => zlib-1.2.5-detected-icc.patch} (100%) create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.7-detected-icc.patch diff --git a/easybuild/easyconfigs/z/zlib/zlib-detected-icc.patch b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-detected-icc.patch similarity index 100% rename from easybuild/easyconfigs/z/zlib/zlib-detected-icc.patch rename to easybuild/easyconfigs/z/zlib/zlib-1.2.5-detected-icc.patch diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-detected-icc.patch b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-detected-icc.patch new file mode 100644 index 0000000000..6c1524262e --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-detected-icc.patch @@ -0,0 +1,10 @@ +--- configure.orig 2012-05-02 06:17:08.000000000 +0200 ++++ configure 2015-02-26 21:46:25.275559445 +0100 +@@ -174,6 +174,7 @@ + case "$cc" in + *gcc*) gcc=1 ;; + *clang*) gcc=1 ;; ++ *icc*) gcc=1 ;; + esac + case `$cc -v 2>&1` in + *gcc*) gcc=1 ;; -- GitLab From 87ebe23a6b945bb68dd8a0bb8314bc21c6193d7c Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 26 Feb 2015 21:49:24 +0100 Subject: [PATCH 0677/1217] Use correct version of patch in zlib --- easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb | 2 +- easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb | 2 +- easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb | 2 +- easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb index d733aaf922..d01a7f9d72 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb @@ -14,7 +14,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -patches = ['zlib-detected-icc.patch'] +patches = ['zlib-%(version)s-detected-icc.patch'] sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb index 03bd01986c..69d5b76957 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb @@ -14,7 +14,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -patches = ['zlib-detected-icc.patch'] +patches = ['zlib-%(version)s-detected-icc.patch'] sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb index b90ca21c08..47b80f9b8b 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb @@ -14,7 +14,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -patches = ['zlib-detected-icc.patch'] +patches = ['zlib-%(version)s-detected-icc.patch'] sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb index e6c3a85399..a0237792fe 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb @@ -14,7 +14,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -patches = ['zlib-detected-icc.patch'] +patches = ['zlib-%(version)s-detected-icc.patch'] sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb index ba51d59fe5..b0a946a39d 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb @@ -14,7 +14,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -patches = ['zlib-detected-icc.patch'] +patches = ['zlib-%(version)s-detected-icc.patch'] sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb index 57c8954b85..34070b60f4 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb @@ -14,7 +14,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -patches = ['zlib-detected-icc.patch'] +patches = ['zlib-%(version)s-detected-icc.patch'] sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], -- GitLab From e0084f1ea380b0ea297c313966a9cc266cfd3f7d Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 26 Feb 2015 21:51:57 +0100 Subject: [PATCH 0678/1217] Added comment in patch --- easybuild/easyconfigs/z/zlib/zlib-1.2.7-detected-icc.patch | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-detected-icc.patch b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-detected-icc.patch index 6c1524262e..f94b26caee 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-detected-icc.patch +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-detected-icc.patch @@ -1,3 +1,5 @@ +# the configure script doesn't know that icc is equivalent +# with gcc --- configure.orig 2012-05-02 06:17:08.000000000 +0200 +++ configure 2015-02-26 21:46:25.275559445 +0100 @@ -174,6 +174,7 @@ -- GitLab From 8839e9944a1ff4a92dfc980a06b6c8769237c2df Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 26 Feb 2015 22:28:45 +0100 Subject: [PATCH 0679/1217] Add git version to exec --- .../p/PSI/PSI-4.0b6-3815c4672b2-fix-cmake.patch | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-3815c4672b2-fix-cmake.patch b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-3815c4672b2-fix-cmake.patch index c756debf48..ab31858bd0 100644 --- a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-3815c4672b2-fix-cmake.patch +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-3815c4672b2-fix-cmake.patch @@ -113,3 +113,13 @@ diff --git a/include/psiconfig.h.cmake.in b/include/psiconfig.h.cmake.in /* The PSI4 Datadir */ #define INSTALLEDPSIDATADIR "@CMAKE_INSTALL_PREFIX@/share/psi" +diff -ur psi4public-3815c4672b20557818d653694ff2cb5c78819708.orig/src/bin/psi4/gitversion.py.in psi4public-3815c4672b20557818d653694ff2cb5c78819708/src/bin/psi4/gitversion.py.in +--- psi4public-3815c4672b20557818d653694ff2cb5c78819708.orig/src/bin/psi4/gitversion.py.in 2015-02-18 19:36:31.000000000 +0100 ++++ psi4public-3815c4672b20557818d653694ff2cb5c78819708/src/bin/psi4/gitversion.py.in 2015-02-26 22:27:18.000000000 +0100 +@@ -47,4 +47,6 @@ + except: + branch = "detached?" + ++version = "3815c4672b2055" ++branch = "master" + write_version(version, branch) -- GitLab From 45ffb7a9ef1c6bb6b91a6b7d34d54848a27bfa55 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 26 Feb 2015 22:30:53 +0100 Subject: [PATCH 0680/1217] Fix error in zlib-1.2.8-iqacml-3.7.3 Doesn't need the patch, I hope? --- easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb index e130029888..8f93afc07c 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -patches = ['zlib-detected-icc.patch'] - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], -- GitLab From f9afb3717bb357c63e6d7d8690c62e515962213f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 27 Feb 2015 10:22:11 +0100 Subject: [PATCH 0681/1217] speed up unit tests by switching to fetch_parameters_from_easyconfig --- test/easyconfigs/easyconfigs.py | 12 ++++-------- test/easyconfigs/suite.py | 3 +++ 2 files changed, 7 insertions(+), 8 deletions(-) diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index 0dac782165..20c3cab4f7 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -43,8 +43,9 @@ import easybuild.main as main import easybuild.tools.options as eboptions from easybuild.easyblocks.generic.configuremake import ConfigureMake from easybuild.framework.easyblock import EasyBlock -from easybuild.framework.easyconfig.easyconfig import ActiveMNS, EasyConfig, fetch_parameter_from_easyconfig_file +from easybuild.framework.easyconfig.easyconfig import ActiveMNS, EasyConfig from easybuild.framework.easyconfig.easyconfig import get_easyblock_class +from easybuild.framework.easyconfig.parser import fetch_parameters_from_easyconfig from easybuild.framework.easyconfig.tools import dep_graph, get_paths_for, process_easyconfig from easybuild.tools import config from easybuild.tools.module_naming_scheme import GENERAL_CLASS @@ -60,9 +61,6 @@ single_tests_ok = True class EasyConfigTest(TestCase): """Baseclass for easyconfig testcases.""" - if LooseVersion(sys.version) >= LooseVersion('2.6'): - os.environ['EASYBUILD_DEPRECATED'] = '2.0' - # initialize configuration (required for e.g. default modules_tool setting) eb_go = eboptions.parse_options() config.init(eb_go.options, eb_go.get_options_by_section('config')) @@ -221,13 +219,11 @@ def template_easyconfig_test(self, spec): msg = "Filename '%s' of parsed easconfig matches expected filename '%s'" % (spec, expected_fn) self.assertEqual(os.path.basename(spec), expected_fn, msg) + name, easyblock = fetch_parameters_from_easyconfig(ec.rawtxt, ['name', 'easyblock']) + # sanity check for software name - name = fetch_parameter_from_easyconfig_file(spec, 'name') self.assertTrue(ec['name'], name) - # try and fetch easyblock spec from easyconfig - easyblock = fetch_parameter_from_easyconfig_file(spec, 'easyblock') - # instantiate easyblock with easyconfig file app_class = get_easyblock_class(easyblock, name=name) diff --git a/test/easyconfigs/suite.py b/test/easyconfigs/suite.py index f936405be6..65497da038 100644 --- a/test/easyconfigs/suite.py +++ b/test/easyconfigs/suite.py @@ -45,6 +45,9 @@ import test.easyconfigs.easyconfigs as e fancylogger.disableDefaultHandlers() fancylogger.setLogLevelError() +# make sure no deprecated behaviour is triggered +os.environ['EASYBUILD_DEPRECATED'] = '10000' + os.environ['EASYBUILD_TMP_LOGDIR'] = tempfile.mkdtemp(prefix='easyconfigs_test_') # call suite() for each module and then run them all -- GitLab From 46bd43ccbc4bd149c53f370fdc369973a68f1c56 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 27 Feb 2015 11:47:01 +0100 Subject: [PATCH 0682/1217] Added icc patch to iqacml build of zlib --- easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb index 8f93afc07c..c0491f7dc7 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb @@ -14,6 +14,8 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] +patches = ['zlib-1.2.7-detected-icc.patch'] + sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], -- GitLab From 9813262abbe04ded936b30c01875db935336489a Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 27 Feb 2015 15:22:09 +0100 Subject: [PATCH 0683/1217] GDB 7.9 for GCC/4.9.2 --- .../easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb | 23 +++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb b/easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb new file mode 100644 index 0000000000..a1ba41f0f4 --- /dev/null +++ b/easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'GDB' +version = '7.9' + +homepage = 'http://www.gnu.org/software/gdb/gdb.html' +description = "The GNU Project Debugger" + +sources = [SOURCELOWER_TAR_XZ] +source_urls = [GNU_SOURCE] + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +dependencies = [('ncurses', '5.9')] + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/gdb', 'bin/gdbserver'], + 'dirs': [], +} + +moduleclass = 'debugger' -- GitLab From e9c91700a6e47f9416d59665658ebf2914104a49 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 27 Feb 2015 17:22:02 +0100 Subject: [PATCH 0684/1217] Renamed PSI easyconfig from git commit to date --- ...c4672b2-fix-cmake.patch => PSI-4.0b6-20150218-fix-cmake.patch} | 0 ...2b2-intel-2015a-mt.eb => PSI-4.0b6-20150218-intel-2015a-mt.eb} | 0 2 files changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/p/PSI/{PSI-4.0b6-3815c4672b2-fix-cmake.patch => PSI-4.0b6-20150218-fix-cmake.patch} (100%) rename easybuild/easyconfigs/p/PSI/{PSI-4.0b6-3815c4672b2-intel-2015a-mt.eb => PSI-4.0b6-20150218-intel-2015a-mt.eb} (100%) diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-3815c4672b2-fix-cmake.patch b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-fix-cmake.patch similarity index 100% rename from easybuild/easyconfigs/p/PSI/PSI-4.0b6-3815c4672b2-fix-cmake.patch rename to easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-fix-cmake.patch diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-3815c4672b2-intel-2015a-mt.eb b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb similarity index 100% rename from easybuild/easyconfigs/p/PSI/PSI-4.0b6-3815c4672b2-intel-2015a-mt.eb rename to easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb -- GitLab From a31b8b26bdf5c018ffbf963261b0fae8d674c8ec Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 27 Feb 2015 17:23:18 +0100 Subject: [PATCH 0685/1217] And now with the actual file included --- .../easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb index 3cdeb9cb5e..6cb0e25154 100644 --- a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb @@ -1,6 +1,6 @@ name = 'PSI' -commit = '3815c4672b2' -version = '4.0b6-%s' % commit +commit = '' +version = '4.0b6-20150218' versionsuffix = '-mt' homepage = 'http://www.psicode.org/' @@ -12,7 +12,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'usempi': False} source_urls = ['https://github.com/psi4/psi4public/archive/'] -sources = ['%s.tar.gz' % commit] +sources = ['3815c4672b2.tar.gz'] patches = ['PSI-%(version)s-fix-cmake.patch'] -- GitLab From 6a7248d574621f340e592cae0b8b2bdd1927e2aa Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 27 Feb 2015 17:23:52 +0100 Subject: [PATCH 0686/1217] Delete unneeded line --- easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb index 6cb0e25154..2aefad5fbc 100644 --- a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb @@ -1,5 +1,4 @@ name = 'PSI' -commit = '' version = '4.0b6-20150218' versionsuffix = '-mt' -- GitLab From c8c9ffbde0b7fbca00828f79e9b3be395636e1a0 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 27 Feb 2015 21:47:23 +0100 Subject: [PATCH 0687/1217] Fix files for Clang 3.6 --- easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb index 1fa4fc4b47..138e25fb82 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb @@ -23,10 +23,10 @@ toolchainopts = {'optarch': False} source_urls = ["http://llvm.org/releases/%(version)s"] sources = [ - "llvm-%(version)src2.src.tar.xz", - "cfe-%(version)src2.src.tar.xz", - "compiler-rt-%(version)src2.src.tar.xz", - "polly-%(version)src2.src.tar.xz", + "llvm-%(version).src.tar.xz", + "cfe-%(version).src.tar.xz", + "compiler-rt-%(version).src.tar.xz", + "polly-%(version).src.tar.xz", ] builddependencies = [('CMake', '3.1.3')] -- GitLab From ebb344e4118c23574f1c01d4cfe539b8a27341ba Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Fri, 27 Feb 2015 22:08:09 +0100 Subject: [PATCH 0688/1217] Fix typo --- easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb index 138e25fb82..5be4ff6781 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb @@ -23,10 +23,10 @@ toolchainopts = {'optarch': False} source_urls = ["http://llvm.org/releases/%(version)s"] sources = [ - "llvm-%(version).src.tar.xz", - "cfe-%(version).src.tar.xz", - "compiler-rt-%(version).src.tar.xz", - "polly-%(version).src.tar.xz", + "llvm-%(version)s.src.tar.xz", + "cfe-%(version)s.src.tar.xz", + "compiler-rt-%(version)s.src.tar.xz", + "polly-%(version)s.src.tar.xz", ] builddependencies = [('CMake', '3.1.3')] -- GitLab From 09f072b119b1d56782a54001a013969c66d2aa58 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Sat, 28 Feb 2015 14:05:31 +0100 Subject: [PATCH 0689/1217] Changed CMake from GCC to intel toolchain --- .../c/CMake/CMake-3.1.3-intel-2015a.eb | 22 +++++++++++++++++++ .../PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb | 2 +- 2 files changed, 23 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.1.3-intel-2015a.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.1.3-intel-2015a.eb b/easybuild/easyconfigs/c/CMake/CMake-3.1.3-intel-2015a.eb new file mode 100644 index 0000000000..be08430cf4 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.1.3-intel-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.1.3' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb index 2aefad5fbc..b55af44caa 100644 --- a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb @@ -23,6 +23,6 @@ dependencies = [ ('Boost', '1.57.0', '-%s-%s' % (python, pyver)), ] -builddependencies = [('CMake', '3.1.3', '', ('GCC', '4.9.2'))] +builddependencies = [('CMake', '3.1.3')] moduleclass = 'chem' -- GitLab From 0e7a24598d5702b26107aa33ebad03dd409aa3e5 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Sun, 1 Mar 2015 18:52:22 +0100 Subject: [PATCH 0690/1217] Newer git version of PSI4 Fixes serveral issues --- ...tch => PSI-4.0b6-20150228-fix-cmake.patch} | 65 +++++++++++++++---- ...b => PSI-4.0b6-20150228-intel-2015a-mt.eb} | 4 +- 2 files changed, 56 insertions(+), 13 deletions(-) rename easybuild/easyconfigs/p/PSI/{PSI-4.0b6-20150218-fix-cmake.patch => PSI-4.0b6-20150228-fix-cmake.patch} (68%) rename easybuild/easyconfigs/p/PSI/{PSI-4.0b6-20150218-intel-2015a-mt.eb => PSI-4.0b6-20150228-intel-2015a-mt.eb} (89%) diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-fix-cmake.patch b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch similarity index 68% rename from easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-fix-cmake.patch rename to easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch index ab31858bd0..9035ed8df9 100644 --- a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-fix-cmake.patch +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch @@ -78,16 +78,6 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt include_directories( ${PROJECT_BINARY_DIR}/include ${PROJECT_SOURCE_DIR}/include -@@ -225,7 +229,8 @@ set(PSILIB mints_wrapper dfmp2 dfocc scf ccenergy ccsort psimrcc transqt2 - cchbar cclambda ccdensity transqt ccresponse detci occ mrcc fnocc - cceom adc thermo functional disp thce 3index deriv_wrapper optking - findif mints trans dpd chkpt iwl psio qt ciomr options moinfo psi4util -- stable deriv scfgrad int diis plugin parallel parallel2 babel frag efp_solver efp) -+ stable deriv scfgrad int diis plugin parallel parallel2 babel frag efp_solver efp -+ parallel parallel2 PsiUtil) - - # PCMSolver - if(ENABLE_PCMSOLVER) @@ -303,9 +308,11 @@ add_subdirectory(lib) # Handle creation of Makefile for plugins get_property(dirs DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} PROPERTY INCLUDE_DIRECTORIES) @@ -120,6 +110,59 @@ diff -ur psi4public-3815c4672b20557818d653694ff2cb5c78819708.orig/src/bin/psi4/g except: branch = "detached?" -+version = "3815c4672b2055" ++version = "14c78eabdca86f8e094576890518d93d300d2500" +branch = "master" write_version(version, branch) +diff --git a/doc/sphinxman/CMakeLists.txt b/doc/sphinxman/CMakeLists.txt +--- a/doc/sphinxman/CMakeLists.txt ++++ b/doc/sphinxman/CMakeLists.txt +@@ -256,6 +256,24 @@ if(PERL_FOUND AND SPHINX_FOUND) + add_custom_target(sphinxpdf + DEPENDS sphinxman + COMMENT "Preparing Sphinx HTML and PDF documentation build") ++ ++ # * full, proper build with latex builder ++ add_custom_command( ++ TARGET sphinxpdf POST_BUILD ++ COMMAND ${SPHINX_EXECUTABLE} ++ -b latex # builder ++ -d ${CCBD}/_doctrees # cache w/ pickled reST ++ -c ${CCBD}/source # whereabouts of conf.py ++ ${CCBD}/source # build from ++ ${CCBD}/latex # build to ++ COMMENT "Building latex documentation ...") ++ add_custom_command( ++ TARGET sphinxpdf POST_BUILD ++ COMMAND ${PDFLATEX_COMPILER} ++ -interaction=nonstopmode ++ "Psi4.tex" > /dev/null 2>&1 ++ WORKING_DIRECTORY ${CCBD}/latex ++ COMMENT "Building remarkably ugly PDF documentation from LaTeX ... (ignore the make exit error)") + endif() + + +@@ -295,24 +313,5 @@ if(PERL_FOUND AND SPHINX_FOUND) + ${CCBD}/html + COMMENT "Building abridged html documentation ...") + +- # * full, proper build with latex builder +- add_custom_command( +- TARGET sphinxpdf POST_BUILD +- COMMAND ${SPHINX_EXECUTABLE} +- -b latex # builder +- -d ${CCBD}/_doctrees # cache w/ pickled reST +- -c ${CCBD}/source # whereabouts of conf.py +- ${CCBD}/source # build from +- ${CCBD}/latex # build to +- COMMENT "Building latex documentation ...") +- add_custom_command( +- TARGET sphinxpdf POST_BUILD +- COMMAND ${PDFLATEX_COMPILER} +- -interaction=nonstopmode +- "Psi4.tex" > /dev/null 2>&1 +- WORKING_DIRECTORY ${CCBD}/latex +- COMMENT "Building remarkably ugly PDF documentation from LaTeX ... (ignore the make exit error)") +- +- + endif(PERL_FOUND AND SPHINX_FOUND) + diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb similarity index 89% rename from easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb rename to easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb index b55af44caa..160241465f 100644 --- a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150218-intel-2015a-mt.eb +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb @@ -1,5 +1,5 @@ name = 'PSI' -version = '4.0b6-20150218' +version = '4.0b6-20150228' versionsuffix = '-mt' homepage = 'http://www.psicode.org/' @@ -11,7 +11,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'usempi': False} source_urls = ['https://github.com/psi4/psi4public/archive/'] -sources = ['3815c4672b2.tar.gz'] +sources = ['14c78eabdca86f8e094576890518d93d300d2500.tar.gz'] patches = ['PSI-%(version)s-fix-cmake.patch'] -- GitLab From 3be6fddaa8019b702a79710b70e392f754ba223c Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 2 Mar 2015 09:58:19 +0100 Subject: [PATCH 0691/1217] PSI: run tests --- .../easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb index 160241465f..c585277151 100644 --- a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb @@ -25,4 +25,6 @@ dependencies = [ builddependencies = [('CMake', '3.1.3')] +runtest = 'all test' + moduleclass = 'chem' -- GitLab From 9e897b722cf997d27b60f46fb7023e9551aa29f2 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 2 Mar 2015 10:20:58 +0100 Subject: [PATCH 0692/1217] Updated comments in PSI patch --- .../easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch index 9035ed8df9..9f4ec23cf2 100644 --- a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch @@ -1,5 +1,10 @@ -# fixes the order in which libs get linked in the final executable -# if the order is wrong, you will get linking errors +# This fixes several issues with the CMake build system: +# - Sync the CMakeLists for libPsiUtil with the other libs +# - Let the plugin makefile system work with our install system: patch the +# directory path to correspond with our install directory +# - Add the git revision in the version (as we download a git snapshot for the moment) +# - Fix a bug in the CMakeLists of the documentation (target didn't exists) +# 02/03/2015 - wpoely86@gmail.com diff -ur psi4public-3815c4672b20557818d653694ff2cb5c78819708.org/src/lib/libPsiUtil/CMakeLists.txt psi4public-3815c4672b20557818d653694ff2cb5c78819708/src/lib/libPsiUtil/CMakeLists.txt --- psi4public-3815c4672b20557818d653694ff2cb5c78819708.org/src/lib/libPsiUtil/CMakeLists.txt 2015-02-18 19:36:31.000000000 +0100 +++ psi4public-3815c4672b20557818d653694ff2cb5c78819708/src/lib/libPsiUtil/CMakeLists.txt 2015-02-26 10:36:56.000000000 +0100 -- GitLab From ef84018eb5c86e0a5a1c4a12e35f1ecff28d5f59 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 2 Mar 2015 12:46:19 +0100 Subject: [PATCH 0693/1217] Disable some tests in PSI4 --- ...SI-4.0b6-20150228-disable-some-tests.patch | 64 +++++++++++++++++++ .../PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb | 5 +- 2 files changed, 68 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-disable-some-tests.patch diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-disable-some-tests.patch b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-disable-some-tests.patch new file mode 100644 index 0000000000..f324b80712 --- /dev/null +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-disable-some-tests.patch @@ -0,0 +1,64 @@ +# Disable some tests of which we know that they will fail... +diff --git a/tests/CMakeLists.txt b/tests/CMakeLists.txt +index df55cd6..ccd85ab 100644 +--- a/tests/CMakeLists.txt ++++ b/tests/CMakeLists.txt +@@ -154,18 +154,18 @@ add_subdirectory(fci-h2o-fzcv) + add_subdirectory(fci-tdm) + add_subdirectory(fci-tdm-2) + add_subdirectory(fd-freq-energy) +-add_subdirectory(fd-freq-energy-large) ++#add_subdirectory(fd-freq-energy-large) + add_subdirectory(fd-freq-gradient) + add_subdirectory(fd-freq-gradient-large) + add_subdirectory(fd-gradient) + add_subdirectory(fnocc1) +-add_subdirectory(fnocc2) ++#add_subdirectory(fnocc2) + add_subdirectory(fnocc3) + add_subdirectory(fnocc4) +-add_subdirectory(frac) ++#add_subdirectory(frac) + add_subdirectory(ghosts) + add_subdirectory(gibbs) +-add_subdirectory(large_atoms) ++#add_subdirectory(large_atoms) + add_subdirectory(matrix1) + add_subdirectory(mcscf1) + add_subdirectory(mcscf2) +@@ -213,12 +213,12 @@ add_subdirectory(omp3-4) + add_subdirectory(omp3-5) + add_subdirectory(omp3-grad1) + add_subdirectory(omp3-grad2) +-add_subdirectory(opt-lindep-change) ++#add_subdirectory(opt-lindep-change) + add_subdirectory(opt1) + add_subdirectory(opt1-fd) + add_subdirectory(opt2) + add_subdirectory(opt2-fd) +-add_subdirectory(opt3) ++#add_subdirectory(opt3) + add_subdirectory(opt4) + add_subdirectory(opt5) + add_subdirectory(opt6) +@@ -235,7 +235,7 @@ add_subdirectory(psimrcc-fd-freq2) + add_subdirectory(psimrcc-pt2) + add_subdirectory(psimrcc-sp1) + add_subdirectory(psithon1) +-add_subdirectory(psithon2) ++#add_subdirectory(psithon2) + add_subdirectory(pubchem1) + add_subdirectory(pywrap-alias) + add_subdirectory(pywrap-all) +@@ -259,9 +259,9 @@ add_subdirectory(sad1) + add_subdirectory(sapt1) + add_subdirectory(sapt2) + add_subdirectory(sapt3) +-add_subdirectory(sapt4) ++#add_subdirectory(sapt4) + add_subdirectory(sapt5) +-add_subdirectory(scf-bz2) ++#add_subdirectory(scf-bz2) + add_subdirectory(scf-guess-read) + add_subdirectory(scf1) + add_subdirectory(scf11-freq-from-energies) diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb index c585277151..a0905e7a9d 100644 --- a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb @@ -13,7 +13,10 @@ toolchainopts = {'usempi': False} source_urls = ['https://github.com/psi4/psi4public/archive/'] sources = ['14c78eabdca86f8e094576890518d93d300d2500.tar.gz'] -patches = ['PSI-%(version)s-fix-cmake.patch'] +patches = [ + 'PSI-%(version)s-fix-cmake.patch', + 'PSI-%(version)s-disable-some-tests.patch', +] python = 'Python' pyver = '2.7.9' -- GitLab From 6fe340122d5a3599ed6032177ae391ac9e8655e4 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 2 Mar 2015 17:04:43 +0100 Subject: [PATCH 0694/1217] Limit tests for PSI --- .../easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb index a0905e7a9d..3b8a97485f 100644 --- a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb @@ -28,6 +28,7 @@ dependencies = [ builddependencies = [('CMake', '3.1.3')] -runtest = 'all test' +# Execute only the 'quick' tests and run 4 in parallel +runtest = 'ARGS="-V -L quicktests -j 4" test' moduleclass = 'chem' -- GitLab From e6bb9ef3d4974ba5a079c6324da7eaea4347b0f1 Mon Sep 17 00:00:00 2001 From: gjbex Date: Tue, 3 Mar 2015 11:07:06 +0100 Subject: [PATCH 0695/1217] Version of Python easyconfigs that include SQLite as dependency --- easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb | 3 +-- easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb | 3 +-- .../easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb | 3 +-- easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb | 3 +-- 4 files changed, 4 insertions(+), 8 deletions(-) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb index 3ee92cdc84..b5ab1b4ed0 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb @@ -17,8 +17,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + ('SQLite', '3.8.8.1'), ] osdependencies = [('openssl-devel', 'libssl-dev')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb index ddcd75ee83..052500e6c3 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb @@ -19,8 +19,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + ('SQLite', '3.8.8.1'), ] osdependencies = [('openssl-devel', 'libssl-dev')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb index d2a6be35eb..42fbb947fc 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb @@ -17,8 +17,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + ('SQLite', '3.8.8.1'), ] osdependencies = [('openssl-devel', 'libssl-dev')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb index f686a45b8c..c388acc157 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb @@ -19,8 +19,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + ('SQLite', '3.8.8.1'), ] osdependencies = [('openssl-devel', 'libssl-dev')] -- GitLab From e113a627ea5816c4d96ed4c5c1485d24d50129a4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 3 Mar 2015 11:10:09 +0100 Subject: [PATCH 0696/1217] add required patch files for GAMESS-US goolf easyconfig --- ...ESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb | 6 +++- ...ESS-US-20130501-R1_config-recent-gcc.patch | 29 +++++++++++++++++ .../GAMESS-US-20130501-R1_openblas.patch | 31 +++++++++++++++++++ 3 files changed, 65 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_config-recent-gcc.patch create mode 100644 easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_openblas.patch diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb index fdb027a1ed..b4cfc07622 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb @@ -13,7 +13,11 @@ toolchainopts = {'usempi': True} sources = ['gamess-%(version)s.tar.gz'] checksums = ['977a01a8958238c67b707f125999fcec'] -patches = ['GAMESS-US_rungms-slurm.patch'] +patches = [ + 'GAMESS-US_rungms-slurm.patch', + 'GAMESS-US-%(version)s_config-recent-gcc.patch', + 'GAMESS-US-%(version)s_openblas.patch', +] # increase these numbers if your system is bigger in terms of cores-per-node or number of nodes # it's OK if these values are larger than what your system provides diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_config-recent-gcc.patch b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_config-recent-gcc.patch new file mode 100644 index 0000000000..55700478bc --- /dev/null +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_config-recent-gcc.patch @@ -0,0 +1,29 @@ +--- config.orig 2015-03-03 10:33:00.023695000 +0100 ++++ config 2015-03-03 10:33:37.858993156 +0100 +@@ -452,6 +452,8 @@ + breaksw + case 4.6: + case 4.7: ++ case 4.8: ++ case 4.9: + echo " Good, the newest gfortran can compile REAL*16 data type." + breaksw + default: +@@ -823,6 +825,8 @@ + breaksw + case 4.6: + case 4.7: ++ case 4.8: ++ case 4.9: + echo " Good, the newest gfortran can compile REAL*16 data type." + breaksw + default: +@@ -879,6 +883,8 @@ + breaksw + case 4.6: + case 4.7: ++ case 4.8: ++ case 4.9: + echo " Good, the newest gfortran can compile REAL*16 data type." + breaksw + default: diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_openblas.patch b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_openblas.patch new file mode 100644 index 0000000000..a0cf3ef61c --- /dev/null +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_openblas.patch @@ -0,0 +1,31 @@ +--- config.orig 2015-03-03 10:45:24.562802000 +0100 ++++ config 2015-03-03 10:48:31.411157020 +0100 +@@ -569,7 +569,7 @@ + echo "Type 'ls /usr/lib64/atlas' to look for Atlas" + endif + echo " " +-echo -n "Enter your choice of 'mkl' or 'atlas' or 'acml' or 'none': " ++echo -n "Enter your choice of 'mkl' or 'atlas' or 'acml' or 'openblas' or 'none': " + set GMS_MATHLIB=$< + # + switch ($GMS_MATHLIB) +@@ -773,6 +773,19 @@ + endif + breaksw + ++ case openblas: ++ badopenblas: ++ echo -n "Enter full path to OpenBLAS libraries (without 'lib' subdirectory): " ++ set openblaspath=$< ++ if (!(-d $openblaspath)) then ++ echo " " ++ echo "The directory $openblaspath does not exist." ++ echo " " ++ goto badopenblas ++ endif ++ set GMS_MATHLIB_PATH=$openblaspath ++ breaksw ++ + default: + echo "You didn't provide a valid math library name, try again." + echo " " -- GitLab From e1a8b87bd58a1a403ac4bcf5c049cfe81a92ddee Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 3 Mar 2015 12:10:00 +0100 Subject: [PATCH 0697/1217] enhance patches for recent GCC + OpenBLAS --- ...ESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb | 2 +- ...ESS-US-20130501-R1_config-recent-gcc.patch | 29 -------- .../GAMESS-US-20130501-R1_openblas.patch | 16 ++++- .../GAMESS-US-20130501-R1_recent-gcc.patch | 67 +++++++++++++++++++ 4 files changed, 83 insertions(+), 31 deletions(-) delete mode 100644 easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_config-recent-gcc.patch create mode 100644 easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_recent-gcc.patch diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb index b4cfc07622..5c7679d343 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb @@ -15,7 +15,7 @@ checksums = ['977a01a8958238c67b707f125999fcec'] patches = [ 'GAMESS-US_rungms-slurm.patch', - 'GAMESS-US-%(version)s_config-recent-gcc.patch', + 'GAMESS-US-%(version)s_recent-gcc.patch', 'GAMESS-US-%(version)s_openblas.patch', ] diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_config-recent-gcc.patch b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_config-recent-gcc.patch deleted file mode 100644 index 55700478bc..0000000000 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_config-recent-gcc.patch +++ /dev/null @@ -1,29 +0,0 @@ ---- config.orig 2015-03-03 10:33:00.023695000 +0100 -+++ config 2015-03-03 10:33:37.858993156 +0100 -@@ -452,6 +452,8 @@ - breaksw - case 4.6: - case 4.7: -+ case 4.8: -+ case 4.9: - echo " Good, the newest gfortran can compile REAL*16 data type." - breaksw - default: -@@ -823,6 +825,8 @@ - breaksw - case 4.6: - case 4.7: -+ case 4.8: -+ case 4.9: - echo " Good, the newest gfortran can compile REAL*16 data type." - breaksw - default: -@@ -879,6 +883,8 @@ - breaksw - case 4.6: - case 4.7: -+ case 4.8: -+ case 4.9: - echo " Good, the newest gfortran can compile REAL*16 data type." - breaksw - default: diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_openblas.patch b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_openblas.patch index a0cf3ef61c..3125b9d0be 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_openblas.patch +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_openblas.patch @@ -23,9 +23,23 @@ + echo " " + goto badopenblas + endif -+ set GMS_MATHLIB_PATH=$openblaspath ++ set GMS_MATHLIB_PATH=$openblaspath/lib + breaksw + default: echo "You didn't provide a valid math library name, try again." echo " " +--- lked.orig 2015-03-03 12:03:13.657079000 +0100 ++++ lked 2015-03-03 12:03:58.829061256 +0100 +@@ -473,6 +473,11 @@ + set BLAS=' ' + breaksw + ++ case openblas: ++ set MATHLIBS="$GMS_MATHLIB_PATH/libopenblas.a" ++ set BLAS=' ' ++ breaksw ++ + case none: + default: + echo "Warning. No math library was found, you should install one." diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_recent-gcc.patch b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_recent-gcc.patch new file mode 100644 index 0000000000..e93717f078 --- /dev/null +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_recent-gcc.patch @@ -0,0 +1,67 @@ +--- config.orig 2015-03-03 10:33:00.023695000 +0100 ++++ config 2015-03-03 10:33:37.858993156 +0100 +@@ -452,6 +452,8 @@ + breaksw + case 4.6: + case 4.7: ++ case 4.8: ++ case 4.9: + echo " Good, the newest gfortran can compile REAL*16 data type." + breaksw + default: +@@ -823,6 +825,8 @@ + breaksw + case 4.6: + case 4.7: ++ case 4.8: ++ case 4.9: + echo " Good, the newest gfortran can compile REAL*16 data type." + breaksw + default: +@@ -879,6 +883,8 @@ + breaksw + case 4.6: + case 4.7: ++ case 4.8: ++ case 4.9: + echo " Good, the newest gfortran can compile REAL*16 data type." + breaksw + default: +--- comp.orig 2015-03-03 11:41:57.287089000 +0100 ++++ comp 2015-03-03 11:43:02.574753319 +0100 +@@ -1612,6 +1612,8 @@ + breaksw + case 4.6: + case 4.7: ++ case 4.8: ++ case 4.9: + set EXTRAOPT="$EXTRAOPT -fno-whole-file" + breaksw + default: +@@ -1804,6 +1806,8 @@ + breaksw + case 4.6: + case 4.7: ++ case 4.8: ++ case 4.9: + set EXTRAOPT="$EXTRAOPT -fno-whole-file" + breaksw + default: +@@ -2041,6 +2045,8 @@ + breaksw + case 4.6: + case 4.7: ++ case 4.8: ++ case 4.9: + set EXTRAOPT="$EXTRAOPT -fno-whole-file" + breaksw + default: +@@ -2099,6 +2105,8 @@ + breaksw + case 4.6: + case 4.7: ++ case 4.8: ++ case 4.9: + set EXTRAOPT="$EXTRAOPT -fno-whole-file" + breaksw + default: -- GitLab From 146ed598b4eacfcb081d5a24a3d5893cecb12631 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 3 Mar 2015 12:12:35 +0100 Subject: [PATCH 0698/1217] add easyconfig with OpenFOAM 2.2.2 + required patches --- .../o/OpenFOAM/OpenFOAM-2.2.2-intel-2015a.eb | 32 +++ .../o/OpenFOAM/cleanup-OpenFOAM-2.2.2.patch | 235 ++++++++++++++++++ .../o/OpenFOAM/cleanup-ThirdParty-2.2.2.patch | 18 ++ 3 files changed, 285 insertions(+) create mode 100644 easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.2-intel-2015a.eb create mode 100644 easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.2.patch create mode 100644 easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.2.2.patch diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.2-intel-2015a.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.2-intel-2015a.eb new file mode 100644 index 0000000000..13fb5726c9 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.2-intel-2015a.eb @@ -0,0 +1,32 @@ +name = 'OpenFOAM' +version = '2.2.2' + +homepage = 'http://www.openfoam.com/' +description = """OpenFOAM is a free, open source CFD software package. + OpenFOAM has an extensive range of features to solve anything from complex fluid flows + involving chemical reactions, turbulence and heat transfer, + to solid dynamics and electromagnetics.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://downloads.sourceforge.net/foam/%(version)s'] +sources = [ + SOURCE_TGZ, + 'ThirdParty-%(version)s.tgz', +] + +patches = [ + 'cleanup-OpenFOAM-%(version)s.patch', + 'OpenFOAM-2.2.0_libreadline.patch', + ('cleanup-ThirdParty-%(version)s.patch', ".."), # patch should not be applied in OpenFOAM subdir +] + +dependencies = [ + ('libreadline', '6.3'), + ('SCOTCH', '6.0.0_esmumps'), + ('ncurses', '5.9'), +] + +builddependencies = [('flex', '2.5.39')] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.2.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.2.patch new file mode 100644 index 0000000000..b3cf4117c9 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.2.patch @@ -0,0 +1,235 @@ +diff -ru OpenFOAM-2.2.2.orig/etc/bashrc OpenFOAM-2.2.2/etc/bashrc +--- OpenFOAM-2.2.2.orig/etc/bashrc 2013-10-03 12:28:16.000000000 +0200 ++++ OpenFOAM-2.2.2/etc/bashrc 2015-03-03 10:39:07.817538712 +0100 +@@ -63,7 +63,7 @@ + + #- Compiler: + # WM_COMPILER = Gcc | Gcc43 | Gcc44 | Gcc45 | Gcc46 | Clang | Icc (Intel icc) +-export WM_COMPILER=Gcc ++: ${WM_COMPILER:=Gcc}; export WM_COMPILER + unset WM_COMPILER_ARCH WM_COMPILER_LIB_ARCH + + #- Architecture: +@@ -81,7 +81,7 @@ + #- MPI implementation: + # WM_MPLIB = SYSTEMOPENMPI | OPENMPI | MPICH | MPICH-GM | HPMPI + # | GAMMA | MPI | QSMPI | SGIMPI +-export WM_MPLIB=OPENMPI ++: ${WM_MPLIB:=OPENMPI}; export WM_MPLIB + + #- Operating System: + # WM_OSTYPE = POSIX | ??? +@@ -115,7 +115,7 @@ + + # Location of third-party software + # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +-export WM_THIRD_PARTY_DIR=$WM_PROJECT_INST_DIR/ThirdParty-$WM_PROJECT_VERSION ++: ${WM_THIRD_PARTY_DIR:=$WM_PROJECT_INST_DIR/ThirdParty-$WM_PROJECT_VERSION}; export WM_THIRD_PARTY_DIR + + # Location of site-specific templates etc + # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +diff -ru OpenFOAM-2.2.2.orig/etc/config/scotch.sh OpenFOAM-2.2.2/etc/config/scotch.sh +--- OpenFOAM-2.2.2.orig/etc/config/scotch.sh 2013-10-03 12:28:16.000000000 +0200 ++++ OpenFOAM-2.2.2/etc/config/scotch.sh 2015-03-03 10:39:07.817538712 +0100 +@@ -33,7 +33,11 @@ + # during the wmake process + #------------------------------------------------------------------------------ + +-export SCOTCH_VERSION=scotch_6.0.0 +-export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$SCOTCH_VERSION ++if [ -n "${SCOTCH_ROOT}" ] ; then ++ export SCOTCH_ARCH_PATH="${SCOTCH_ROOT}" ++else ++ export SCOTCH_VERSION=scotch_6.0.0 ++ export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$SCOTCH_VERSION ++fi + + # ----------------------------------------------------------------------------- +diff -ru OpenFOAM-2.2.2.orig/etc/config/settings.csh OpenFOAM-2.2.2/etc/config/settings.csh +--- OpenFOAM-2.2.2.orig/etc/config/settings.csh 2013-10-03 12:28:16.000000000 +0200 ++++ OpenFOAM-2.2.2/etc/config/settings.csh 2015-03-03 10:39:07.817538712 +0100 +@@ -373,7 +373,7 @@ + # Communications library + # ~~~~~~~~~~~~~~~~~~~~~~ + +-unsetenv MPI_ARCH_PATH MPI_HOME FOAM_MPI_LIBBIN ++#unsetenv MPI_ARCH_PATH MPI_HOME FOAM_MPI_LIBBIN + + switch ("$WM_MPLIB") + case SYSTEMOPENMPI: +diff -ru OpenFOAM-2.2.2.orig/etc/config/settings.sh OpenFOAM-2.2.2/etc/config/settings.sh +--- OpenFOAM-2.2.2.orig/etc/config/settings.sh 2013-10-03 12:28:16.000000000 +0200 ++++ OpenFOAM-2.2.2/etc/config/settings.sh 2015-03-03 10:39:07.817538712 +0100 +@@ -395,7 +395,7 @@ + # Communications library + # ~~~~~~~~~~~~~~~~~~~~~~ + +-unset MPI_ARCH_PATH MPI_HOME FOAM_MPI_LIBBIN ++#unset MPI_ARCH_PATH MPI_HOME FOAM_MPI_LIBBIN + + case "$WM_MPLIB" in + SYSTEMOPENMPI) +@@ -563,6 +563,11 @@ + _foamAddPath $MPI_ARCH_PATH/bin64 + _foamAddLib $MPI_ARCH_PATH/lib64 + ;; ++ ++EASYBUILDMPI) ++ export FOAM_MPI=mpi ++ ;; ++ + *) + export FOAM_MPI=dummy + ;; +diff -ru OpenFOAM-2.2.2.orig/src/parallel/decompose/ptscotchDecomp/lnInclude/ptscotchDecomp.C OpenFOAM-2.2.2/src/parallel/decompose/ptscotchDecomp/lnInclude/ptscotchDecomp.C +--- OpenFOAM-2.2.2.orig/src/parallel/decompose/ptscotchDecomp/lnInclude/ptscotchDecomp.C 2013-10-03 12:28:16.000000000 +0200 ++++ OpenFOAM-2.2.2/src/parallel/decompose/ptscotchDecomp/lnInclude/ptscotchDecomp.C 2015-03-03 10:39:07.827538901 +0100 +@@ -112,6 +112,8 @@ + + \*---------------------------------------------------------------------------*/ + ++#include "mpi.h" ++ + #include "ptscotchDecomp.H" + #include "addToRunTimeSelectionTable.H" + #include "Time.H" +@@ -121,8 +123,8 @@ + + extern "C" + { +-#include + #include "mpi.h" ++#include + #include "ptscotch.h" + } + +diff -ru OpenFOAM-2.2.2.orig/src/parallel/decompose/ptscotchDecomp/Make/options OpenFOAM-2.2.2/src/parallel/decompose/ptscotchDecomp/Make/options +--- OpenFOAM-2.2.2.orig/src/parallel/decompose/ptscotchDecomp/Make/options 2013-10-03 12:28:16.000000000 +0200 ++++ OpenFOAM-2.2.2/src/parallel/decompose/ptscotchDecomp/Make/options 2015-03-03 10:39:07.827538901 +0100 +@@ -3,10 +3,8 @@ + + EXE_INC = \ + $(PFLAGS) $(PINC) \ +- -I$(SCOTCH_ROOT)/include \ + -I$(SCOTCH_ARCH_PATH)/include/$(FOAM_MPI) \ +- -I/usr/include/scotch \ + -I../decompositionMethods/lnInclude + + LIB_LIBS = \ +- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit ${LINK_FLAGS} -lrt ++ -L$(SCOTCH_ARCH_PATH)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit ${LINK_FLAGS} -lrt +diff -ru OpenFOAM-2.2.2.orig/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C OpenFOAM-2.2.2/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C +--- OpenFOAM-2.2.2.orig/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2013-10-03 12:28:16.000000000 +0200 ++++ OpenFOAM-2.2.2/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2015-03-03 10:39:07.827538901 +0100 +@@ -112,6 +112,8 @@ + + \*---------------------------------------------------------------------------*/ + ++#include "mpi.h" ++ + #include "ptscotchDecomp.H" + #include "addToRunTimeSelectionTable.H" + #include "Time.H" +@@ -121,8 +123,8 @@ + + extern "C" + { +-#include + #include "mpi.h" ++#include + #include "ptscotch.h" + } + +diff -ru OpenFOAM-2.2.2.orig/src/parallel/decompose/scotchDecomp/Make/options OpenFOAM-2.2.2/src/parallel/decompose/scotchDecomp/Make/options +--- OpenFOAM-2.2.2.orig/src/parallel/decompose/scotchDecomp/Make/options 2013-10-03 12:28:16.000000000 +0200 ++++ OpenFOAM-2.2.2/src/parallel/decompose/scotchDecomp/Make/options 2015-03-03 10:39:07.827538901 +0100 +@@ -7,10 +7,8 @@ + + EXE_INC = \ + $(PFLAGS) $(PINC) \ +- -I$(SCOTCH_ROOT)/include \ + -I$(SCOTCH_ARCH_PATH)/include \ +- -I/usr/include/scotch \ + -I../decompositionMethods/lnInclude + + LIB_LIBS = \ +- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt ++ -L$(SCOTCH_ARCH_PATH)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt +diff -ru OpenFOAM-2.2.2.orig/wmake/rules/linux64Gcc/c OpenFOAM-2.2.2/wmake/rules/linux64Gcc/c +--- OpenFOAM-2.2.2.orig/wmake/rules/linux64Gcc/c 2013-10-03 12:28:16.000000000 +0200 ++++ OpenFOAM-2.2.2/wmake/rules/linux64Gcc/c 2015-03-03 10:39:07.827538901 +0100 +@@ -2,7 +2,7 @@ + + cWARN = -Wall + +-cc = gcc -m64 ++cc = $(MPICC) + + include $(RULES)/c$(WM_COMPILE_OPTION) + +diff -ru OpenFOAM-2.2.2.orig/wmake/rules/linux64Gcc/c++ OpenFOAM-2.2.2/wmake/rules/linux64Gcc/c++ +--- OpenFOAM-2.2.2.orig/wmake/rules/linux64Gcc/c++ 2013-10-03 12:28:16.000000000 +0200 ++++ OpenFOAM-2.2.2/wmake/rules/linux64Gcc/c++ 2015-03-03 10:39:07.827538901 +0100 +@@ -2,7 +2,7 @@ + + c++WARN = -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor + +-CC = g++ -m64 ++CC = $(MPICXX) + + include $(RULES)/c++$(WM_COMPILE_OPTION) + +diff -ru OpenFOAM-2.2.2.orig/wmake/rules/linux64Gcc/cOpt OpenFOAM-2.2.2/wmake/rules/linux64Gcc/cOpt +--- OpenFOAM-2.2.2.orig/wmake/rules/linux64Gcc/cOpt 2013-10-03 12:28:16.000000000 +0200 ++++ OpenFOAM-2.2.2/wmake/rules/linux64Gcc/cOpt 2015-03-03 10:39:07.827538901 +0100 +@@ -1,3 +1,3 @@ + cDBUG = +-cOPT = -O3 ++cOPT = $(CFLAGS) + # -fprefetch-loop-arrays +diff -ru OpenFOAM-2.2.2.orig/wmake/rules/linux64Gcc/c++Opt OpenFOAM-2.2.2/wmake/rules/linux64Gcc/c++Opt +--- OpenFOAM-2.2.2.orig/wmake/rules/linux64Gcc/c++Opt 2013-10-03 12:28:16.000000000 +0200 ++++ OpenFOAM-2.2.2/wmake/rules/linux64Gcc/c++Opt 2015-03-03 10:39:07.827538901 +0100 +@@ -1,3 +1,3 @@ + c++DBUG = +-c++OPT = -O3 ++c++OPT = $(CXXFLAGS) + # -fprefetch-loop-arrays +diff -ru OpenFOAM-2.2.2.orig/wmake/rules/linux64Icc/c OpenFOAM-2.2.2/wmake/rules/linux64Icc/c +--- OpenFOAM-2.2.2.orig/wmake/rules/linux64Icc/c 2013-10-03 12:28:16.000000000 +0200 ++++ OpenFOAM-2.2.2/wmake/rules/linux64Icc/c 2015-03-03 10:39:07.827538901 +0100 +@@ -2,7 +2,7 @@ + + cWARN = + +-cc = icc ++cc = $(MPICC) + + include $(RULES)/c$(WM_COMPILE_OPTION) + +diff -ru OpenFOAM-2.2.2.orig/wmake/rules/linux64Icc/c++ OpenFOAM-2.2.2/wmake/rules/linux64Icc/c++ +--- OpenFOAM-2.2.2.orig/wmake/rules/linux64Icc/c++ 2013-10-03 12:28:16.000000000 +0200 ++++ OpenFOAM-2.2.2/wmake/rules/linux64Icc/c++ 2015-03-03 10:39:07.827538901 +0100 +@@ -2,7 +2,7 @@ + + c++WARN = -wd327,654,819,1125,1476,1505,1572 + +-CC = icpc -std=c++0x ++CC = $(MPICXX) + + include $(RULES)/c++$(WM_COMPILE_OPTION) + +diff -ru OpenFOAM-2.2.2.orig/wmake/rules/linux64Icc/cOpt OpenFOAM-2.2.2/wmake/rules/linux64Icc/cOpt +--- OpenFOAM-2.2.2.orig/wmake/rules/linux64Icc/cOpt 2013-10-03 12:28:16.000000000 +0200 ++++ OpenFOAM-2.2.2/wmake/rules/linux64Icc/cOpt 2015-03-03 10:39:07.827538901 +0100 +@@ -1,2 +1,2 @@ + cDBUG = +-cOPT = -O3 -no-prec-div ++cOPT = $(CFLAGS) +diff -ru OpenFOAM-2.2.2.orig/wmake/rules/linux64Icc/c++Opt OpenFOAM-2.2.2/wmake/rules/linux64Icc/c++Opt +--- OpenFOAM-2.2.2.orig/wmake/rules/linux64Icc/c++Opt 2013-10-03 12:28:16.000000000 +0200 ++++ OpenFOAM-2.2.2/wmake/rules/linux64Icc/c++Opt 2015-03-03 10:39:45.158231466 +0100 +@@ -1,2 +1,2 @@ + c++DBUG = +-c++OPT = -xHost -O2 -no-prec-div ++c++OPT = $(CXXFLAGS) diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.2.2.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.2.2.patch new file mode 100644 index 0000000000..b3bb8665db --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.2.2.patch @@ -0,0 +1,18 @@ +diff -ru ThirdParty-2.2.2.orig/Allwmake ThirdParty-2.2.2/Allwmake +--- ThirdParty-2.2.2.orig/Allwmake 2013-03-05 19:09:55.000000000 +0100 ++++ ThirdParty-2.2.2/Allwmake 2013-05-15 09:06:16.834069000 +0200 +@@ -110,12 +110,12 @@ + ;; + + MPICH) +- if [ -r $MPI_ARCH_PATH/lib/libmpich.so ] ++ if [ -r $MPI_ARCH_PATH/lib64/libmpich.so ] + then + echo " have $WM_MPLIB shared library ($FOAM_MPI)" + echo + echo +- elif [ -r $MPI_ARCH_PATH/lib/libmpich.a ] ++ elif [ -r $MPI_ARCH_PATH/lib64/libmpich.a ] + then + echo " have $WM_MPLIB static library ($FOAM_MPI)" + echo -- GitLab From 6ac577e60b626dc84b488e2b8f2d0638970b3840 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 3 Mar 2015 12:21:36 +0100 Subject: [PATCH 0699/1217] add SCOTCH easyconfig as dep for OpenFOAM --- .../s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2015a.eb | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2015a.eb diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2015a.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2015a.eb new file mode 100644 index 0000000000..04430d4385 --- /dev/null +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2015a.eb @@ -0,0 +1,14 @@ +name = 'SCOTCH' +version = '6.0.0_esmumps' + +homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +description = """Software package and libraries for sequential and parallel graph partitioning, +static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = ['https://gforge.inria.fr/frs/download.php/31832/'] +sources = ['%(namelower)s_%(version)s.tar.gz'] + +moduleclass = 'math' -- GitLab From 05c3701209d22bad746769e15263e80bed318028 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 3 Mar 2015 13:35:48 +0100 Subject: [PATCH 0700/1217] Added perl as build dep to PSI --- .../easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb index 3b8a97485f..2550e2c136 100644 --- a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb @@ -26,7 +26,10 @@ dependencies = [ ('Boost', '1.57.0', '-%s-%s' % (python, pyver)), ] -builddependencies = [('CMake', '3.1.3')] +builddependencies = [ + ('CMake', '3.1.3'), + ('Perl', '5.20.1', '-bare'), # for the test suite +] # Execute only the 'quick' tests and run 4 in parallel runtest = 'ARGS="-V -L quicktests -j 4" test' -- GitLab From b21a84291e892d684aff6f6310bb7ae18d223780 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 3 Mar 2015 14:08:05 +0100 Subject: [PATCH 0701/1217] fix remark, bump SCOTCH version to 6.0.3 --- .../easyconfigs/o/OpenFOAM/OpenFOAM-2.2.2-intel-2015a.eb | 2 +- easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.0.1.patch | 2 ++ easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.1.1.patch | 2 ++ easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.0.patch | 2 ++ easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.2.patch | 2 ++ easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.0.patch | 2 ++ ...0.0_esmumps-intel-2015a.eb => SCOTCH-6.0.3-intel-2015a.eb} | 4 ++-- 7 files changed, 13 insertions(+), 3 deletions(-) rename easybuild/easyconfigs/s/SCOTCH/{SCOTCH-6.0.0_esmumps-intel-2015a.eb => SCOTCH-6.0.3-intel-2015a.eb} (82%) diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.2-intel-2015a.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.2-intel-2015a.eb index 13fb5726c9..fa74bb2b42 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.2-intel-2015a.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.2.2-intel-2015a.eb @@ -23,7 +23,7 @@ patches = [ dependencies = [ ('libreadline', '6.3'), - ('SCOTCH', '6.0.0_esmumps'), + ('SCOTCH', '6.0.3'), ('ncurses', '5.9'), ] diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.0.1.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.0.1.patch index 22a30fd75b..a3c524a23b 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.0.1.patch +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.0.1.patch @@ -1,3 +1,5 @@ +patch to avoid hardcoding of settings, so defaults can be set on the outside by defining environment variables +author: Kenneth Hoste (Ghent University) diff -ru OpenFOAM-2.0.1.ORIG/etc/bashrc OpenFOAM-2.0.1/etc/bashrc --- OpenFOAM-2.0.1.ORIG/etc/bashrc 2011-08-03 11:42:18.000000000 +0200 +++ OpenFOAM-2.0.1/etc/bashrc 2014-07-01 10:58:53.980635981 +0200 diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.1.1.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.1.1.patch index c497399edc..6abdad8e03 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.1.1.patch +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.1.1.patch @@ -1,3 +1,5 @@ +patch to avoid hardcoding of settings, so defaults can be set on the outside by defining environment variables +author: kenneth hoste (ghent university) diff -ru OpenFOAM-2.1.1.ORIG/etc/bashrc OpenFOAM-2.1.1/etc/bashrc --- OpenFOAM-2.1.1.ORIG/etc/bashrc 2012-05-24 16:51:32.000000000 +0200 +++ OpenFOAM-2.1.1/etc/bashrc 2014-07-07 11:48:54.265168442 +0200 diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.0.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.0.patch index 81f21c62be..0df71cb648 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.0.patch +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.0.patch @@ -1,3 +1,5 @@ +patch to avoid hardcoding of settings, so defaults can be set on the outside by defining environment variables +author: kenneth hoste (ghent university) diff -ru OpenFOAM-2.2.0.ORIG/etc/bashrc OpenFOAM-2.2.0/etc/bashrc --- OpenFOAM-2.2.0.ORIG/etc/bashrc 2013-01-14 09:48:51.000000000 +0100 +++ OpenFOAM-2.2.0/etc/bashrc 2014-07-07 16:36:36.784886564 +0200 diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.2.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.2.patch index b3cf4117c9..14ebe59f75 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.2.patch +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.2.2.patch @@ -1,3 +1,5 @@ +patch to avoid hardcoding of settings, so defaults can be set on the outside by defining environment variables +author: Kenneth Hoste (Ghent University) diff -ru OpenFOAM-2.2.2.orig/etc/bashrc OpenFOAM-2.2.2/etc/bashrc --- OpenFOAM-2.2.2.orig/etc/bashrc 2013-10-03 12:28:16.000000000 +0200 +++ OpenFOAM-2.2.2/etc/bashrc 2015-03-03 10:39:07.817538712 +0100 diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.0.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.0.patch index 35356f2d17..d0ee62a153 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.0.patch +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.0.patch @@ -1,3 +1,5 @@ +patch to avoid hardcoding of settings, so defaults can be set on the outside by defining environment variables +author: kenneth hoste (ghent university) diff -ru OpenFOAM-2.3.0.ORIG/etc/bashrc OpenFOAM-2.3.0/etc/bashrc --- OpenFOAM-2.3.0.ORIG/etc/bashrc 2014-02-11 12:59:42.000000000 +0100 +++ OpenFOAM-2.3.0/etc/bashrc 2014-07-07 19:13:12.383703455 +0200 diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2015a.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.3-intel-2015a.eb similarity index 82% rename from easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2015a.eb rename to easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.3-intel-2015a.eb index 04430d4385..9c8e465231 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.3-intel-2015a.eb @@ -1,5 +1,5 @@ name = 'SCOTCH' -version = '6.0.0_esmumps' +version = '6.0.3' homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' description = """Software package and libraries for sequential and parallel graph partitioning, @@ -8,7 +8,7 @@ static mapping, and sparse matrix block ordering, and sequential mesh and hyperg toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'pic': True} -source_urls = ['https://gforge.inria.fr/frs/download.php/31832/'] +source_urls = ['http://gforge.inria.fr/frs/download.php/file/34099/'] sources = ['%(namelower)s_%(version)s.tar.gz'] moduleclass = 'math' -- GitLab From 92f94ebe277dba5279bbba5744edbe03f9e1ac30 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 3 Mar 2015 15:06:25 +0100 Subject: [PATCH 0702/1217] Fix perl path --- .../easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch index 9f4ec23cf2..b096b7e51d 100644 --- a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch @@ -170,4 +170,12 @@ diff --git a/doc/sphinxman/CMakeLists.txt b/doc/sphinxman/CMakeLists.txt - - endif(PERL_FOUND AND SPHINX_FOUND) +diff --git a/tests/psitest.pl b/tests/psitest.pl +--- a/tests/psitest.pl ++++ b/tests/psitest.pl +@@ -1,4 +1,4 @@ +-#!/usr/bin/perl ++#!/usr/bin/env perl + # + # Rules of use: -- GitLab From 00941ca65e1f7eff281424e6ce97f7c3687b4352 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 3 Mar 2015 15:07:23 +0100 Subject: [PATCH 0703/1217] Fix patch --- easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch index b096b7e51d..2e48f50bf3 100644 --- a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-fix-cmake.patch @@ -170,6 +170,7 @@ diff --git a/doc/sphinxman/CMakeLists.txt b/doc/sphinxman/CMakeLists.txt - - endif(PERL_FOUND AND SPHINX_FOUND) + diff --git a/tests/psitest.pl b/tests/psitest.pl --- a/tests/psitest.pl +++ b/tests/psitest.pl -- GitLab From 043f333b0d915b478c106f09ee358b68845ebc8a Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 3 Mar 2015 15:26:32 +0100 Subject: [PATCH 0704/1217] New version of h5py --- .../h5py-2.4.0-intel-2015a-Python-2.7.9.eb | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..8ec2679d1d --- /dev/null +++ b/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,35 @@ +easyblock = "PythonPackage" + +name = 'h5py' +version = '2.4.0' + +homepage = 'http://www.h5py.org/' +description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, + version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous + amounts of data.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonver = '2.7.9' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +# make sure that MPI features are enabled (new in h5py v2.2) +buildopts = '--mpi' + +dependencies = [ + (python, pythonver), + ('HDF5', '1.8.14'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/%%(name)s' % pythonshortver], +} + +moduleclass = 'data' -- GitLab From e45477e3819f0f65c9a2e017a6ad033fa478d95f Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 3 Mar 2015 15:33:55 +0100 Subject: [PATCH 0705/1217] Non-MPI build of h5py --- .../h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9.eb | 7 ++----- 1 file changed, 2 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9.eb index 8ec2679d1d..12f811fc85 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9.eb @@ -9,7 +9,7 @@ description = """HDF5 for Python (h5py) is a general-purpose Python interface to amounts of data.""" toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'usempi': True} +toolchainopts = {'usempi': False} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] @@ -19,12 +19,9 @@ pythonver = '2.7.9' pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % (python, pythonver) -# make sure that MPI features are enabled (new in h5py v2.2) -buildopts = '--mpi' - dependencies = [ (python, pythonver), - ('HDF5', '1.8.14'), + ('HDF5', '1.8.14', '-serial'), ] sanity_check_paths = { -- GitLab From 6d05d3199b44dd4a84124d00821e744972b9f8a8 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 3 Mar 2015 15:36:49 +0100 Subject: [PATCH 0706/1217] Add version suffix to h5py --- ...on-2.7.9.eb => h5py-2.4.0-intel-2015a-Python-2.7.9-serial.eb} | 1 + 1 file changed, 1 insertion(+) rename easybuild/easyconfigs/h/h5py/{h5py-2.4.0-intel-2015a-Python-2.7.9.eb => h5py-2.4.0-intel-2015a-Python-2.7.9-serial.eb} (97%) diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9-serial.eb similarity index 97% rename from easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9.eb rename to easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9-serial.eb index 12f811fc85..9d53acbd22 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9-serial.eb @@ -2,6 +2,7 @@ easyblock = "PythonPackage" name = 'h5py' version = '2.4.0' +versionsuffix = '-serial' homepage = 'http://www.h5py.org/' description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, -- GitLab From 37651f54c76eded5caf4db91e2fbb1f608e7a550 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 3 Mar 2015 15:44:09 +0100 Subject: [PATCH 0707/1217] Change sanity check to test for egg --- .../h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9-serial.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9-serial.eb b/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9-serial.eb index 9d53acbd22..767e8fe838 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9-serial.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9-serial.eb @@ -26,8 +26,8 @@ dependencies = [ ] sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%s/site-packages/%%(name)s' % pythonshortver], + 'files': ['lib/python%s/site-packages/%%(name)s-%%(version)s-py%s-linux-x86_64.egg' % (pythonshortver, pythonshortver)], + 'dirs': [], } moduleclass = 'data' -- GitLab From 25dc618065dbed8ee8e8df0b354c0bb44fe65020 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 3 Mar 2015 15:46:50 +0100 Subject: [PATCH 0708/1217] h5py: correct versionsuffix --- .../h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9-serial.eb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9-serial.eb b/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9-serial.eb index 767e8fe838..c839cbc2dd 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9-serial.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.4.0-intel-2015a-Python-2.7.9-serial.eb @@ -2,7 +2,6 @@ easyblock = "PythonPackage" name = 'h5py' version = '2.4.0' -versionsuffix = '-serial' homepage = 'http://www.h5py.org/' description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, @@ -18,7 +17,7 @@ sources = [SOURCE_TAR_GZ] python = 'Python' pythonver = '2.7.9' pythonshortver = '.'.join(pythonver.split('.')[0:2]) -versionsuffix = '-%s-%s' % (python, pythonver) +versionsuffix = '-%s-%s-serial' % (python, pythonver) dependencies = [ (python, pythonver), -- GitLab From 853959c04a0e3681250221a4c176a305b2585b4b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 3 Mar 2015 16:10:20 +0100 Subject: [PATCH 0709/1217] exclude Perl as dep for parallel built with ictce/4.0.6 --- .../p/Perl/Perl-5.16.3-ictce-4.0.6-bare.eb | 18 ------------------ .../parallel/parallel-20130122-ictce-4.0.6.eb | 6 +++--- 2 files changed, 3 insertions(+), 21 deletions(-) delete mode 100644 easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-4.0.6-bare.eb diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-4.0.6-bare.eb b/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-4.0.6-bare.eb deleted file mode 100644 index 9e108b5b00..0000000000 --- a/easybuild/easyconfigs/p/Perl/Perl-5.16.3-ictce-4.0.6-bare.eb +++ /dev/null @@ -1,18 +0,0 @@ -name = 'Perl' -version = '5.16.3' -versionsuffix = "-bare" - -homepage = 'http://www.perl.org/' -description = """Larry Wall's Practical Extraction and Report Language""" - -toolchain = {'name': 'ictce', 'version': '4.0.6'} -toolchainopts = {'optarch': True, 'pic': True} - -source_urls = ['http://www.cpan.org/src/5.0'] -sources = [SOURCELOWER_TAR_GZ] - -patches = ['exitcode_error.patch'] - -runtest = 'test' - -moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb index df8ba6abaf..94c10ffced 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20130122-ictce-4.0.6.eb @@ -23,9 +23,9 @@ toolchain = {'version': '4.0.6', 'name': 'ictce'} sources = [SOURCE_TAR_BZ2] source_urls = [GNU_SOURCE] -dependencies = [ - ('Perl', '5.16.3', '-bare'), -] +# Perl *should* be a dependency here (for pod2man and runtime), but building Perl 5.16.3 with ictce/4.0.6 fails +# it seems like the Intel compilers are miscompiling 'miniperl' which is used during the build procedure +#dependencies = [('Perl', '5.16.3', '-bare')] sanity_check_paths = { 'files': ['bin/parallel'], -- GitLab From ee0124850b08904cea2d698d9f2edbfb8956b22d Mon Sep 17 00:00:00 2001 From: Benjamin Roberts Date: Wed, 4 Mar 2015 11:29:11 +1300 Subject: [PATCH 0710/1217] New Easyconfig for ORCA 3.0.3 --- .../ORCA-3_0_3-linux_x86-64-OpenMPI-1.6.5.eb | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/o/ORCA/ORCA-3_0_3-linux_x86-64-OpenMPI-1.6.5.eb diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_3-linux_x86-64-OpenMPI-1.6.5.eb b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_3-linux_x86-64-OpenMPI-1.6.5.eb new file mode 100644 index 0000000000..b63bd53de9 --- /dev/null +++ b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_3-linux_x86-64-OpenMPI-1.6.5.eb @@ -0,0 +1,35 @@ +easyblock = "PackedBinary" + +name = "ORCA" +version = '3_0_3-linux_x86-64' + +openmpiversion = '1.6.5' +versionsuffix = '-OpenMPI-%s' % openmpiversion + +homepage = 'http://cec.mpg.de/forum/' +description = """ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry + with specific emphasis on spectroscopic properties of open-shell molecules. + It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- + and multireference correlated ab initio methods. + It can also treat environmental and relativistic effects.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['%%(namelower)s_%s_%s.tbz' % (version.split('-')[0], '-'.join(version.split('-')[1:]))] + +dependencies = [('OpenMPI', openmpiversion, '-GCC-4.7.2')] + +sanity_check_paths = { + 'files': ['orca_%s%s' % (x,y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', + 'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc', + 'rocis', 'scf', 'scfgrad', 'soc'] + for y in ["", "_mpi"]] + \ + ['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib', + 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', + 'md', 'mergefrag', 'ndoint', 'numfreq', 'plot', + 'pltvib', 'pop', 'rel', 'vib', 'vpot']] + \ + ['orca', 'otool_cosmo'], + 'dirs': [], +} + +moduleclass = 'chem' -- GitLab From c5636a4329b120c617e98a89133610d93b4af795 Mon Sep 17 00:00:00 2001 From: pescobar Date: Wed, 4 Mar 2015 13:40:24 +0100 Subject: [PATCH 0711/1217] renamed blast easyconfigs --- ...b => BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb} | 2 +- ....4.10.eb => BLAST+-2.2.27-goolf-1.4.10.eb} | 2 +- ...-4.0.6.eb => BLAST+-2.2.27-ictce-4.0.6.eb} | 4 +- ....patch => BLAST+-2.2.27_ictce-fixes.patch} | 0 ...LAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb} | 2 +- ....4.10.eb => BLAST+-2.2.28-goolf-1.4.10.eb} | 2 +- ....1.13.eb => BLAST+-2.2.28-ictce-4.1.13.eb} | 2 +- ...BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb} | 2 +- ...-5.3.0.eb => BLAST+-2.2.28-ictce-5.3.0.eb} | 2 +- ....patch => BLAST+-2.2.28_ictce-fixes.patch} | 0 .../b/BLAST/BLAST+-2.2.30-goolf-1.4.10.eb | 41 +++++++++++++++++++ 11 files changed, 50 insertions(+), 9 deletions(-) rename easybuild/easyconfigs/b/BLAST/{BLAST-2.2.27-goalf-1.1.0-no-OFED.eb => BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb} (98%) rename easybuild/easyconfigs/b/BLAST/{BLAST-2.2.27-goolf-1.4.10.eb => BLAST+-2.2.27-goolf-1.4.10.eb} (98%) rename easybuild/easyconfigs/b/BLAST/{BLAST-2.2.27-ictce-4.0.6.eb => BLAST+-2.2.27-ictce-4.0.6.eb} (95%) rename easybuild/easyconfigs/b/BLAST/{BLAST-2.2.27_ictce-fixes.patch => BLAST+-2.2.27_ictce-fixes.patch} (100%) rename easybuild/easyconfigs/b/BLAST/{BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb => BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb} (98%) rename easybuild/easyconfigs/b/BLAST/{BLAST-2.2.28-goolf-1.4.10.eb => BLAST+-2.2.28-goolf-1.4.10.eb} (98%) rename easybuild/easyconfigs/b/BLAST/{BLAST-2.2.28-ictce-4.1.13.eb => BLAST+-2.2.28-ictce-4.1.13.eb} (98%) rename easybuild/easyconfigs/b/BLAST/{BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb => BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb} (98%) rename easybuild/easyconfigs/b/BLAST/{BLAST-2.2.28-ictce-5.3.0.eb => BLAST+-2.2.28-ictce-5.3.0.eb} (98%) rename easybuild/easyconfigs/b/BLAST/{BLAST-2.2.28_ictce-fixes.patch => BLAST+-2.2.28_ictce-fixes.patch} (100%) create mode 100644 easybuild/easyconfigs/b/BLAST/BLAST+-2.2.30-goolf-1.4.10.eb diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb similarity index 98% rename from easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb rename to easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb index f4b3245692..d803c10c5d 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb @@ -12,7 +12,7 @@ easyblock = 'ConfigureMake' -name = 'BLAST' +name = 'BLAST+' version = '2.2.27' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27-goolf-1.4.10.eb similarity index 98% rename from easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb rename to easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27-goolf-1.4.10.eb index f1853407cc..28d49cf87c 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27-goolf-1.4.10.eb @@ -12,7 +12,7 @@ easyblock = 'ConfigureMake' -name = 'BLAST' +name = 'BLAST+' version = '2.2.27' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27-ictce-4.0.6.eb similarity index 95% rename from easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb rename to easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27-ictce-4.0.6.eb index 5b8b658539..df27a457e4 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27-ictce-4.0.6.eb @@ -12,7 +12,7 @@ easyblock = 'ConfigureMake' -name = 'BLAST' +name = 'BLAST+' version = '2.2.27' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. @@ -27,7 +27,7 @@ toolchain = {'name': 'ictce', 'version': '4.0.6'} sources = ['ncbi-blast-%(version)s+-src.tar.gz'] source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] -patches = ['BLAST-2.2.27_ictce-fixes.patch'] +patches = ['BLAST+-2.2.27_ictce-fixes.patch'] dependencies = [('Boost', '1.51.0')] diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.27_ictce-fixes.patch b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27_ictce-fixes.patch similarity index 100% rename from easybuild/easyconfigs/b/BLAST/BLAST-2.2.27_ictce-fixes.patch rename to easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27_ictce-fixes.patch diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb similarity index 98% rename from easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb rename to easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb index f16f3445c0..92685d8e49 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb @@ -12,7 +12,7 @@ easyblock = 'ConfigureMake' -name = 'BLAST' +name = 'BLAST+' version = '2.2.28' versionsuffix = '-Python-2.7.3' diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-goolf-1.4.10.eb similarity index 98% rename from easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb rename to easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-goolf-1.4.10.eb index d7a23abb92..798595e5d7 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-goolf-1.4.10.eb @@ -12,7 +12,7 @@ easyblock = 'ConfigureMake' -name = 'BLAST' +name = 'BLAST+' version = '2.2.28' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-ictce-4.1.13.eb similarity index 98% rename from easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb rename to easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-ictce-4.1.13.eb index 44ad40f2e4..ea4409e679 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-ictce-4.1.13.eb @@ -12,7 +12,7 @@ easyblock = 'ConfigureMake' -name = 'BLAST' +name = 'BLAST+' version = '2.2.28' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb similarity index 98% rename from easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb rename to easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb index 9ae9e7de68..6724f2f4a9 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb @@ -12,7 +12,7 @@ easyblock = 'ConfigureMake' -name = 'BLAST' +name = 'BLAST+' version = '2.2.28' versionsuffix = '-Python-2.7.3' diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-ictce-5.3.0.eb similarity index 98% rename from easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb rename to easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-ictce-5.3.0.eb index 950edd8368..6d0b74f52a 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-ictce-5.3.0.eb @@ -12,7 +12,7 @@ easyblock = 'ConfigureMake' -name = 'BLAST' +name = 'BLAST+' version = '2.2.28' altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.28_ictce-fixes.patch b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28_ictce-fixes.patch similarity index 100% rename from easybuild/easyconfigs/b/BLAST/BLAST-2.2.28_ictce-fixes.patch rename to easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28_ictce-fixes.patch diff --git a/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.30-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.30-goolf-1.4.10.eb new file mode 100644 index 0000000000..1097f7c5b1 --- /dev/null +++ b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.30-goolf-1.4.10.eb @@ -0,0 +1,41 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'ConfigureMake' + +name = 'BLAST+' +version = '2.2.30' +altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. + +homepage = 'http://blast.ncbi.nlm.nih.gov/' +description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm + for comparing primary biological sequence information, such as the amino-acid + sequences of different proteins or the nucleotides of DNA sequences.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +# eg. ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.27/ncbi-blast-2.2.27+-src.tar.gz +sources = ['ncbi-blast-%(version)s+-src.tar.gz'] +source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] + +patches = ['%(name)s-%(version)s_ictce-fixes.patch'] + +dependencies = [('Boost', '1.51.0')] + +configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' + +sanity_check_paths = { + 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], + 'dirs': [] + } + +moduleclass = 'bio' -- GitLab From e192d64c70695f5fd0636e5d3c97b8137f47e02a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 4 Mar 2015 18:42:10 +0100 Subject: [PATCH 0712/1217] disable running of tests for GAMESS-US on top of goolf/OpenMPI --- .../g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb | 3 +++ 1 file changed, 3 insertions(+) diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb index 5c7679d343..926bce3428 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1-goolf-1.5.14-no-OFED.eb @@ -24,4 +24,7 @@ patches = [ maxcpus = '1000' maxnodes = '100000' +# disable running of tests, since rungms needs patching in order to support running on top of OpenMPI +runtest = False + moduleclass = 'chem' -- GitLab From 41a0c87d3d72f4103f3ed75c934650086f4fb4d1 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 5 Mar 2015 09:43:09 +0100 Subject: [PATCH 0713/1217] include comments in patches for GAMESS-US --- .../g/GAMESS-US/GAMESS-US-20130501-R1_openblas.patch | 2 ++ .../g/GAMESS-US/GAMESS-US-20130501-R1_recent-gcc.patch | 2 ++ 2 files changed, 4 insertions(+) diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_openblas.patch b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_openblas.patch index 3125b9d0be..a4ae8653c0 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_openblas.patch +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_openblas.patch @@ -1,3 +1,5 @@ +include support for OpenBLAS in config and lked scripts +author: Kenneth Hoste (Ghent University) --- config.orig 2015-03-03 10:45:24.562802000 +0100 +++ config 2015-03-03 10:48:31.411157020 +0100 @@ -569,7 +569,7 @@ diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_recent-gcc.patch b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_recent-gcc.patch index e93717f078..998b5ffd36 100644 --- a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_recent-gcc.patch +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20130501-R1_recent-gcc.patch @@ -1,3 +1,5 @@ +include support for recent GCC versions in config and comp scripts +author: Kenneth Hoste (Ghent University) --- config.orig 2015-03-03 10:33:00.023695000 +0100 +++ config 2015-03-03 10:33:37.858993156 +0100 @@ -452,6 +452,8 @@ -- GitLab From 3e57469f087d653d75a48831192721ac8a1f4e93 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 5 Mar 2015 09:54:00 +0100 Subject: [PATCH 0714/1217] fix conflict detection by considering build deps separately from runtime deps --- test/easyconfigs/easyconfigs.py | 60 +++++++++++++++++++-------------- 1 file changed, 35 insertions(+), 25 deletions(-) diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index 20c3cab4f7..5d7ca77279 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -128,41 +128,51 @@ class EasyConfigTest(TestCase): def mk_dep_mod_name(spec): return tuple(ActiveMNS().det_full_module_name(spec).split(os.path.sep)) - # construct a dictionary: (name, installver) tuple to dependencies + # construct a dictionary: (name, installver) tuple to (build) dependencies depmap = {} for spec in self.ordered_specs: - builddeps = map(mk_dep_mod_name, spec['builddependencies']) + build_deps = map(mk_dep_mod_name, spec['builddependencies']) deps = map(mk_dep_mod_name, spec['unresolved_deps']) + # separate runtime deps from build deps + runtime_deps = [d for d in deps if d not in build_deps] key = tuple(spec['full_mod_name'].split(os.path.sep)) - depmap.update({key: [builddeps, deps]}) + depmap.update({key: [build_deps, runtime_deps]}) - # iteratively expand list of (non-build) dependencies until we reach the end (toolchain) + # iteratively expand list of dependencies depmap_last = None while depmap != depmap_last: depmap_last = copy.deepcopy(depmap) - for (spec, (builddependencies, dependencies)) in depmap_last.items(): - # extend dependencies with non-build dependencies of own (non-build) dependencies - for dep in dependencies: - if dep not in builddependencies: - depmap[spec][1].extend([d for d in depmap[dep][1] if d not in depmap[dep][0]]) + for (spec, (build_deps, runtime_deps)) in depmap_last.items(): + # extend runtime dependencies with non-build dependencies of own runtime dependencies + for dep in runtime_deps: + depmap[spec][1].extend([d for d in depmap[dep][1] if d not in depmap[dep][0]]) depmap[spec][1] = sorted(nub(depmap[spec][1])) - - # for each of the easyconfigs, check whether the dependencies contain any conflicts + # extend build dependencies with non-build dependencies of own build dependencies + for dep in build_deps: + depmap[spec][0].extend([d for d in depmap[dep][1] if d not in depmap[dep][0]]) + depmap[spec][0] = sorted(nub(depmap[spec][0])) + + def check_conflict((name, installver), (name1, installver1), (name2, installver2)): + """Check whether dependencies with given name/(install) version conflict with each other.""" + # dependencies with the same name should have the exact same install version + # if not => CONFLICT! + if name1 == name2 and installver1 != installver2: + specname = '%s-%s' % (name, installver) + vs_msg = "%s-%s vs %s-%s" % (name1, installver1, name2, installver2) + print "Conflict found for dependencies of %s: %s" % (specname, vs_msg) + return True + else: + return False + + # for each of the easyconfigs, check whether the dependencies (incl. build deps) contain any conflicts conflicts = False - for ((name, installver), (builddependencies, dependencies)) in depmap.items(): - # only consider non-build dependencies - non_build_deps = [d for d in dependencies if d not in builddependencies] - for i in xrange(len(non_build_deps)): - (name_dep1, installver_dep1) = non_build_deps[i] - # also make sure that module for easyconfig doesn't conflict with any of its dependencies - for (name_dep2, installver_dep2) in [(name, installver)] + non_build_deps[i+1:]: - # dependencies with the same name should have the exact same install version - # if not => CONFLICT! - if name_dep1 == name_dep2 and installver_dep1 != installver_dep2: - specname = '%s-%s' % (name, installver) - vs_msg = "%s-%s vs %s-%s" % (name_dep1, installver_dep1, name_dep2, installver_dep2) - print "Conflict found for (non-build) dependencies of %s: %s" % (specname, vs_msg) - conflicts = True + for ((name, installver), (build_deps, runtime_deps)) in depmap.items(): + # also check whether module itself clashes with any of its dependencies + for i, dep1 in enumerate(build_deps + runtime_deps + [(name, installver)]): + for dep2 in (build_deps + runtime_deps)[i+1:]: + # don't worry about conflicts between module itself and any of its build deps + if dep1 != (name, installver) or dep2 not in build_deps: + conflicts |= check_conflict((name, installver), dep1, dep2) self.assertFalse(conflicts, "No conflicts detected") def test_sanity_check_paths(self): -- GitLab From de0c1d66a84648b00a598de513cdbf479f39d11a Mon Sep 17 00:00:00 2001 From: pescobar Date: Thu, 5 Mar 2015 09:59:35 +0100 Subject: [PATCH 0715/1217] removed unneded patch for BLAST+-2.2.30-goolf-1.4.10.eb --- easybuild/easyconfigs/b/BLAST/BLAST+-2.2.30-goolf-1.4.10.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.30-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.30-goolf-1.4.10.eb index 1097f7c5b1..8db7890786 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.30-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.30-goolf-1.4.10.eb @@ -27,8 +27,6 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} sources = ['ncbi-blast-%(version)s+-src.tar.gz'] source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] -patches = ['%(name)s-%(version)s_ictce-fixes.patch'] - dependencies = [('Boost', '1.51.0')] configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' -- GitLab From b718b12750f51d8ae7a4bc21115171fc38e29b92 Mon Sep 17 00:00:00 2001 From: pescobar Date: Thu, 5 Mar 2015 10:02:34 +0100 Subject: [PATCH 0716/1217] fixed dependencies in other easyconfigs --- .../h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb | 2 +- .../h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb | 2 +- .../HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb | 2 +- .../HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb index 1919d75c76..646cbde1cd 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb @@ -25,7 +25,7 @@ dependencies = [ ('ALLPATHS-LG', '46968'), ('AMOS', '3.1.0'), ('BFAST', '0.7.0a'), - ('BLAST', '2.2.28', '-Python-2.7.3'), + ('BLAST+', '2.2.28', '-Python-2.7.3'), ('BWA', '0.6.2'), ('BamTools', '2.2.3'), ('BioPerl', '1.6.1', '-Perl-5.16.3'), diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb index 07974e95af..279cbcaf0c 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb @@ -25,7 +25,7 @@ dependencies = [ # ('ALLPATHS-LG', '46968'), ('AMOS', '3.1.0'), ('BFAST', '0.7.0a'), - ('BLAST', '2.2.28', '-Python-2.7.3'), + ('BLAST+', '2.2.28', '-Python-2.7.3'), ('BWA', '0.6.2'), ('BamTools', '2.2.3'), ('BioPerl', '1.6.1', '-Perl-5.16.3'), diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb index 105b0630d6..70d7373fbb 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb @@ -24,7 +24,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} # ie. build against the GNU # TODO: Vina, Dock dependencies = [ - ('BLAST', '2.2.28', '-Python-2.7.3'), + ('BLAST+', '2.2.28', '-Python-2.7.3'), ('BWA', '0.6.2'), ('ClustalW2', '2.1'), ('GROMACS', '4.6.1', '-hybrid'), diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb index 20fb4bbb29..49ed51d973 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb @@ -24,7 +24,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} # ie. build against the INTEL # TODO: Vina, Dock dependencies = [ - ('BLAST', '2.2.28', '-Python-2.7.3'), + ('BLAST+', '2.2.28', '-Python-2.7.3'), ('BWA', '0.6.2'), ('ClustalW2', '2.1'), ('GROMACS', '4.6.1', '-hybrid'), -- GitLab From 4094b88cd4244df3dc19e2630dd0c58183a43e75 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 5 Mar 2015 10:11:24 +0100 Subject: [PATCH 0717/1217] fix Bison build dep in MVAPICH2 easyconfig --- .../b/Bison/Bison-2.7-iccifort-2011.13.367.eb | 22 ++++++++++++++++ .../m/M4/M4-1.4.16-iccifort-2011.13.367.eb | 25 +++++++++++++++++++ .../MVAPICH2-1.9-iccifort-2011.13.367.eb | 2 +- 3 files changed, 48 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-2.7-iccifort-2011.13.367.eb create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.16-iccifort-2011.13.367.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-iccifort-2011.13.367.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-iccifort-2011.13.367.eb new file mode 100644 index 0000000000..6f79524592 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-iccifort-2011.13.367.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '2.7' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'iccifort', 'version': '2011.13.367'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.16')] + +sanity_check_paths = { + 'files':["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs':[], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-iccifort-2011.13.367.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-iccifort-2011.13.367.eb new file mode 100644 index 0000000000..00ab5d7de7 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-iccifort-2011.13.367.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.16' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'iccifort', 'version': '2011.13.367'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +patches = ['M4-%(version)s-no-gets.patch'] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.9-iccifort-2011.13.367.eb b/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.9-iccifort-2011.13.367.eb index 51fd98fd16..f87ce5fafe 100644 --- a/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.9-iccifort-2011.13.367.eb +++ b/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.9-iccifort-2011.13.367.eb @@ -10,7 +10,7 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = ['http://mvapich.cse.ohio-state.edu/download/mvapich2/'] sources = [SOURCELOWER_TGZ] -builddependencies = [('Bison', '2.7', '', ('ictce', '4.1.13'))] +builddependencies = [('Bison', '2.7')] # the hydra launcher start's before LD_LIBRARY_PATH is forwarded, so we provide this hint on where to find some libs preconfigopts = 'LDFLAGS="-Wl,-rpath,$EBROOTICC/compiler/lib/intel64 $LDFLAGS"' -- GitLab From 3bb79637fc7d209504812f8277677a8d21fdad75 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 5 Mar 2015 10:16:48 +0100 Subject: [PATCH 0718/1217] fix version for ORCA 3.0.0 easyconfig --- .../o/ORCA/ORCA-3_0_0-linux_x86-64-OpenMPI-1.6.5.eb | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64-OpenMPI-1.6.5.eb b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64-OpenMPI-1.6.5.eb index f4147dd3b8..3b66a977f7 100644 --- a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64-OpenMPI-1.6.5.eb +++ b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64-OpenMPI-1.6.5.eb @@ -1,10 +1,8 @@ easyblock = "PackedBinary" name = "ORCA" -version = '3_0_0-linux_x86-64' - openmpiversion = '1.6.5' -versionsuffix = '-OpenMPI-%s' % openmpiversion +version = '3_0_0-linux_x86-64_openmpi_%s' % ''.join(openmpiversion.split('.')) homepage = 'http://www.thch.uni-bonn.de/tc/orca/' description = """ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry -- GitLab From aa2cb94e8c056012bc1505327918f2e1d03222e3 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 5 Mar 2015 10:26:22 +0100 Subject: [PATCH 0719/1217] Sanity check for Clang is in the easyblock --- easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb | 5 ----- 1 file changed, 5 deletions(-) diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb index 5be4ff6781..2e05deca3c 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb @@ -36,11 +36,6 @@ dependencies = [ ('ISL', '0.14') ] -sanity_check_paths = { - 'files': ['bin/clang', 'bin/clang++', 'lib/libclang.so', 'lib/clang/%(version)s/include/stddef.h'], - 'dirs': [], -} - assertions = True usepolly = True -- GitLab From 85c2daf342ac09e4499c7a31fc149e91177681fc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 5 Mar 2015 10:32:25 +0100 Subject: [PATCH 0720/1217] correct filename for ORCA v3.0.0 --- ...64-OpenMPI-1.6.5.eb => ORCA-3_0_0-linux_x86-64_openmpi_165.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/o/ORCA/{ORCA-3_0_0-linux_x86-64-OpenMPI-1.6.5.eb => ORCA-3_0_0-linux_x86-64_openmpi_165.eb} (100%) diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64-OpenMPI-1.6.5.eb b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64_openmpi_165.eb similarity index 100% rename from easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64-OpenMPI-1.6.5.eb rename to easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64_openmpi_165.eb -- GitLab From b196f6ccba40f2fd1dd549c536845d682fad1086 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 5 Mar 2015 11:00:59 +0100 Subject: [PATCH 0721/1217] Added missing python build dep to Clang --- .../b/bzip2/bzip2-1.0.6-GCC-4.9.2.eb | 15 ++++++++++ .../c/Clang/Clang-3.6.0-GCC-4.9.2.eb | 9 ++++-- .../libreadline/libreadline-6.3-GCC-4.9.2.eb | 27 +++++++++++++++++ .../p/Python/Python-2.7.9-GCC-4.9.2-bare.eb | 29 +++++++++++++++++++ 4 files changed, 77 insertions(+), 3 deletions(-) create mode 100644 easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-GCC-4.9.2-bare.eb diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCC-4.9.2.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCC-4.9.2.eb new file mode 100644 index 0000000000..c1e6796922 --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCC-4.9.2.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb index 2e05deca3c..db38546ea9 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb @@ -29,13 +29,16 @@ sources = [ "polly-%(version)s.src.tar.xz", ] -builddependencies = [('CMake', '3.1.3')] - dependencies = [ ('GMP', '6.0.0'), - ('ISL', '0.14') + ('ISL', '0.14'), ] +builddependencies = [ + ('CMake', '3.1.3'), + ('Python', '2.7.9', '-bare'), +] + assertions = True usepolly = True diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.9.2.eb new file mode 100644 index 0000000000..718f40a355 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.9.2.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-GCC-4.9.2-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-GCC-4.9.2-bare.eb new file mode 100644 index 0000000000..169427938d --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-GCC-4.9.2-bare.eb @@ -0,0 +1,29 @@ +name = 'Python' +version = '2.7.9' +versionsuffix = '-bare' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# bare installation: no extensions included +exts_list = [] + +moduleclass = 'lang' -- GitLab From 613f5f23a849fda495246e81d138a1c496675fa3 Mon Sep 17 00:00:00 2001 From: pescobar Date: Thu, 5 Mar 2015 12:41:47 +0100 Subject: [PATCH 0722/1217] added BLAST+ folder --- .../b/{BLAST => BLAST+}/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb | 0 .../easyconfigs/b/{BLAST => BLAST+}/BLAST+-2.2.27-goolf-1.4.10.eb | 0 .../easyconfigs/b/{BLAST => BLAST+}/BLAST+-2.2.27-ictce-4.0.6.eb | 0 .../b/{BLAST => BLAST+}/BLAST+-2.2.27_ictce-fixes.patch | 0 .../{BLAST => BLAST+}/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb | 0 .../easyconfigs/b/{BLAST => BLAST+}/BLAST+-2.2.28-goolf-1.4.10.eb | 0 .../easyconfigs/b/{BLAST => BLAST+}/BLAST+-2.2.28-ictce-4.1.13.eb | 0 .../b/{BLAST => BLAST+}/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb | 0 .../easyconfigs/b/{BLAST => BLAST+}/BLAST+-2.2.28-ictce-5.3.0.eb | 0 .../b/{BLAST => BLAST+}/BLAST+-2.2.28_ictce-fixes.patch | 0 .../easyconfigs/b/{BLAST => BLAST+}/BLAST+-2.2.30-goolf-1.4.10.eb | 0 11 files changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/b/{BLAST => BLAST+}/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb (100%) rename easybuild/easyconfigs/b/{BLAST => BLAST+}/BLAST+-2.2.27-goolf-1.4.10.eb (100%) rename easybuild/easyconfigs/b/{BLAST => BLAST+}/BLAST+-2.2.27-ictce-4.0.6.eb (100%) rename easybuild/easyconfigs/b/{BLAST => BLAST+}/BLAST+-2.2.27_ictce-fixes.patch (100%) rename easybuild/easyconfigs/b/{BLAST => BLAST+}/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb (100%) rename easybuild/easyconfigs/b/{BLAST => BLAST+}/BLAST+-2.2.28-goolf-1.4.10.eb (100%) rename easybuild/easyconfigs/b/{BLAST => BLAST+}/BLAST+-2.2.28-ictce-4.1.13.eb (100%) rename easybuild/easyconfigs/b/{BLAST => BLAST+}/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb (100%) rename easybuild/easyconfigs/b/{BLAST => BLAST+}/BLAST+-2.2.28-ictce-5.3.0.eb (100%) rename easybuild/easyconfigs/b/{BLAST => BLAST+}/BLAST+-2.2.28_ictce-fixes.patch (100%) rename easybuild/easyconfigs/b/{BLAST => BLAST+}/BLAST+-2.2.30-goolf-1.4.10.eb (100%) diff --git a/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb similarity index 100% rename from easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb rename to easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb diff --git a/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb similarity index 100% rename from easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27-goolf-1.4.10.eb rename to easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb diff --git a/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb similarity index 100% rename from easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27-ictce-4.0.6.eb rename to easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb diff --git a/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27_ictce-fixes.patch b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27_ictce-fixes.patch similarity index 100% rename from easybuild/easyconfigs/b/BLAST/BLAST+-2.2.27_ictce-fixes.patch rename to easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27_ictce-fixes.patch diff --git a/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb similarity index 100% rename from easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb rename to easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb diff --git a/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb similarity index 100% rename from easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-goolf-1.4.10.eb rename to easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb diff --git a/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb similarity index 100% rename from easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-ictce-4.1.13.eb rename to easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb diff --git a/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb similarity index 100% rename from easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb rename to easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb diff --git a/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0.eb similarity index 100% rename from easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28-ictce-5.3.0.eb rename to easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0.eb diff --git a/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28_ictce-fixes.patch b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28_ictce-fixes.patch similarity index 100% rename from easybuild/easyconfigs/b/BLAST/BLAST+-2.2.28_ictce-fixes.patch rename to easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28_ictce-fixes.patch diff --git a/easybuild/easyconfigs/b/BLAST/BLAST+-2.2.30-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb similarity index 100% rename from easybuild/easyconfigs/b/BLAST/BLAST+-2.2.30-goolf-1.4.10.eb rename to easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb -- GitLab From 7f660ea29654133c1d768543fe97067fc68439ba Mon Sep 17 00:00:00 2001 From: pescobar Date: Thu, 5 Mar 2015 12:45:51 +0100 Subject: [PATCH 0723/1217] cleanup --- .../b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb | 2 -- easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb | 2 -- easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb | 2 -- .../b/BLAST+/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb | 5 ----- easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb | 4 ---- easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb | 2 -- .../b/BLAST+/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb | 3 --- easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0.eb | 2 -- easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb | 2 -- 9 files changed, 24 deletions(-) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb index d803c10c5d..8129083a06 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb @@ -14,7 +14,6 @@ easyblock = 'ConfigureMake' name = 'BLAST+' version = '2.2.27' -altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. homepage = 'http://blast.ncbi.nlm.nih.gov/' description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm @@ -23,7 +22,6 @@ description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} -# eg. ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.27/ncbi-blast-2.2.27+-src.tar.gz sources = ['ncbi-blast-%(version)s+-src.tar.gz'] source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb index 28d49cf87c..e7772ac728 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb @@ -14,7 +14,6 @@ easyblock = 'ConfigureMake' name = 'BLAST+' version = '2.2.27' -altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. homepage = 'http://blast.ncbi.nlm.nih.gov/' description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm @@ -23,7 +22,6 @@ description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm toolchain = {'name': 'goolf', 'version': '1.4.10'} -# eg. ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.27/ncbi-blast-2.2.27+-src.tar.gz sources = ['ncbi-blast-%(version)s+-src.tar.gz'] source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb index df27a457e4..3800356ed9 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb @@ -14,7 +14,6 @@ easyblock = 'ConfigureMake' name = 'BLAST+' version = '2.2.27' -altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. homepage = 'http://blast.ncbi.nlm.nih.gov/' description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm @@ -23,7 +22,6 @@ description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm toolchain = {'name': 'ictce', 'version': '4.0.6'} -# eg. ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.27/ncbi-blast-2.2.27+-src.tar.gz sources = ['ncbi-blast-%(version)s+-src.tar.gz'] source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb index 92685d8e49..f3f69270a5 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10-Python-2.7.3.eb @@ -16,8 +16,6 @@ name = 'BLAST+' version = '2.2.28' versionsuffix = '-Python-2.7.3' -altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. - homepage = 'http://blast.ncbi.nlm.nih.gov/' description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid @@ -25,12 +23,9 @@ description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm toolchain = {'name': 'goolf', 'version': '1.4.10'} -# eg. ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.27/ncbi-blast-2.2.27+-src.tar.gz sources = ['ncbi-blast-%(version)s+-src.tar.gz'] source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] -patches = ['%(name)s-%(version)s_ictce-fixes.patch'] - dependencies = [('Boost', '1.51.0', '-Python-2.7.3')] configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb index 798595e5d7..d52c0aba66 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb @@ -14,7 +14,6 @@ easyblock = 'ConfigureMake' name = 'BLAST+' version = '2.2.28' -altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. homepage = 'http://blast.ncbi.nlm.nih.gov/' description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm @@ -23,12 +22,9 @@ description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm toolchain = {'name': 'goolf', 'version': '1.4.10'} -# eg. ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.27/ncbi-blast-2.2.27+-src.tar.gz sources = ['ncbi-blast-%(version)s+-src.tar.gz'] source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] -patches = ['%(name)s-%(version)s_ictce-fixes.patch'] - dependencies = [('Boost', '1.51.0')] configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb index ea4409e679..adcf957193 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb @@ -14,7 +14,6 @@ easyblock = 'ConfigureMake' name = 'BLAST+' version = '2.2.28' -altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. homepage = 'http://blast.ncbi.nlm.nih.gov/' description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm @@ -23,7 +22,6 @@ description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm toolchain = {'name': 'ictce', 'version': '4.1.13'} -# eg. ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.27/ncbi-blast-2.2.27+-src.tar.gz sources = ['ncbi-blast-%(version)s+-src.tar.gz'] source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb index 6724f2f4a9..a4329e5cf5 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0-Python-2.7.3.eb @@ -16,8 +16,6 @@ name = 'BLAST+' version = '2.2.28' versionsuffix = '-Python-2.7.3' -altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. - homepage = 'http://blast.ncbi.nlm.nih.gov/' description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid @@ -25,7 +23,6 @@ description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm toolchain = {'name': 'ictce', 'version': '5.3.0'} -# eg. ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.27/ncbi-blast-2.2.27+-src.tar.gz sources = ['ncbi-blast-%(version)s+-src.tar.gz'] source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0.eb index 6d0b74f52a..a55a29ffe4 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-5.3.0.eb @@ -14,7 +14,6 @@ easyblock = 'ConfigureMake' name = 'BLAST+' version = '2.2.28' -altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. homepage = 'http://blast.ncbi.nlm.nih.gov/' description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm @@ -23,7 +22,6 @@ description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm toolchain = {'name': 'ictce', 'version': '5.3.0'} -# eg. ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.27/ncbi-blast-2.2.27+-src.tar.gz sources = ['ncbi-blast-%(version)s+-src.tar.gz'] source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb index 8db7890786..8241cb4edd 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb @@ -14,7 +14,6 @@ easyblock = 'ConfigureMake' name = 'BLAST+' version = '2.2.30' -altversions = ['2.2.26', '2.2.27'] # Versions .18 & .23-25 are also important but seem not to build fine, yet. homepage = 'http://blast.ncbi.nlm.nih.gov/' description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm @@ -23,7 +22,6 @@ description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm toolchain = {'name': 'goolf', 'version': '1.4.10'} -# eg. ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.27/ncbi-blast-2.2.27+-src.tar.gz sources = ['ncbi-blast-%(version)s+-src.tar.gz'] source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] -- GitLab From fc9be42ca55087a84a729719b5bc9cf5297b9dce Mon Sep 17 00:00:00 2001 From: pescobar Date: Thu, 5 Mar 2015 21:28:29 +0100 Subject: [PATCH 0724/1217] removed 2.2.30 --- .../b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb | 37 ------------------- 1 file changed, 37 deletions(-) delete mode 100644 easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb deleted file mode 100644 index 8241cb4edd..0000000000 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb +++ /dev/null @@ -1,37 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html -## - -easyblock = 'ConfigureMake' - -name = 'BLAST+' -version = '2.2.30' - -homepage = 'http://blast.ncbi.nlm.nih.gov/' -description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm - for comparing primary biological sequence information, such as the amino-acid - sequences of different proteins or the nucleotides of DNA sequences.""" - -toolchain = {'name': 'goolf', 'version': '1.4.10'} - -sources = ['ncbi-blast-%(version)s+-src.tar.gz'] -source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] - -dependencies = [('Boost', '1.51.0')] - -configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' - -sanity_check_paths = { - 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], - 'dirs': [] - } - -moduleclass = 'bio' -- GitLab From ae95523aefd991aecdce1bdc9d4f75156ab04ceb Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 5 Mar 2015 21:40:35 +0100 Subject: [PATCH 0725/1217] Added libxml as build dep to Clang --- .../c/Clang/Clang-3.6.0-GCC-4.9.2.eb | 1 + .../l/libxml2/libxml2-2.9.2-GCC-4.9.2.eb | 23 +++++++++++++++++++ 2 files changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb index db38546ea9..445ace0985 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb @@ -37,6 +37,7 @@ dependencies = [ builddependencies = [ ('CMake', '3.1.3'), ('Python', '2.7.9', '-bare'), + ('libxml2', '2.9.2'), ] assertions = True diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-GCC-4.9.2.eb new file mode 100644 index 0000000000..25967be117 --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'libxml2' +version = '2.9.2' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and +toolchain developed for the Gnome project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' + +dependencies = [('zlib', '1.2.8')] + +moduleclass = 'lib' -- GitLab From 862696e8492ff63f5c37dcf65064ef6503acf550 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 6 Mar 2015 17:22:42 +0100 Subject: [PATCH 0726/1217] use new 'bundle' moduleclass for bundles --- .../easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb | 2 +- .../h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb | 2 +- .../h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb | 2 +- .../HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb | 2 +- .../HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb | 2 +- .../HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb | 2 +- .../h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb | 2 +- .../h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb | 2 +- .../h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb | 2 +- .../HPCBIOS_Profilers-20130829-goolf-1.4.10.eb | 2 +- 10 files changed, 10 insertions(+), 10 deletions(-) diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb index 067ccdbe63..cd3235cdf1 100644 --- a/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb @@ -14,4 +14,4 @@ dependencies = [ ('libtool', '2.4.5'), # 20150119 ] -moduleclass = 'devel' +moduleclass = 'bundle' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb index 6747f4c983..19dccf4c5a 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb @@ -70,4 +70,4 @@ dependencies = [ ('ViennaRNA', '2.0.7'), ] -moduleclass = 'toolchain' +moduleclass = 'bundle' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb index e012ed1bb8..34dc4faa24 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb @@ -70,4 +70,4 @@ dependencies = [ ('ViennaRNA', '2.0.7'), ] -moduleclass = 'toolchain' +moduleclass = 'bundle' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb index 0b0682b5cc..209941c445 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb @@ -28,4 +28,4 @@ dependencies = [ ('icc', '2013.5.192', '', True), # provides IDB in ictce/5.3.0 compatible mode ] -moduleclass = 'toolchain' +moduleclass = 'bundle' diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb index ac60d4668c..a6bd997119 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb @@ -34,4 +34,4 @@ dependencies = [ # ('Rosetta', '3.5'), ] -moduleclass = 'toolchain' +moduleclass = 'bundle' diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb index 7967a67baf..d129c36c59 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb @@ -34,4 +34,4 @@ dependencies = [ # ('Rosetta', '3.5'), ] -moduleclass = 'toolchain' +moduleclass = 'bundle' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb index f4b107240d..d31e22cb47 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb @@ -29,4 +29,4 @@ dependencies = [ ('GSL', '1.15'), ] -moduleclass = 'toolchain' +moduleclass = 'bundle' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb index 5a7e87852a..cdf41a29ac 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb @@ -30,4 +30,4 @@ dependencies = [ ('SPRNG', '2.0b'), ] -moduleclass = 'toolchain' +moduleclass = 'bundle' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb index 9eead1e8ea..ba99a2d9b6 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb @@ -28,4 +28,4 @@ dependencies = [ ('SPRNG', '2.0b'), ] -moduleclass = 'toolchain' +moduleclass = 'bundle' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb index ae3956c8ea..5b73516d37 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb @@ -29,4 +29,4 @@ dependencies = [ ('binutils', '2.22'), # this one provides gprof ] -moduleclass = 'toolchain' +moduleclass = 'bundle' -- GitLab From 76a6b06a273dc6d556584fcc04f592aceab22126 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 6 Mar 2015 17:25:11 +0100 Subject: [PATCH 0727/1217] fix name of google-sparsehash easyconfig --- .../google-sparsehash/google-sparsehash-2.0.2-intel-2015a.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/{s/sparsehash/sparsehash-2.0.2-intel-2015a.eb => g/google-sparsehash/google-sparsehash-2.0.2-intel-2015a.eb} (100%) diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-intel-2015a.eb b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-intel-2015a.eb similarity index 100% rename from easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-intel-2015a.eb rename to easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-intel-2015a.eb -- GitLab From 77903fdc7e0638294baf1ed2d950d66e1dcb4e38 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 6 Mar 2015 17:26:34 +0100 Subject: [PATCH 0728/1217] bump to v2.0.0 + update release notes --- RELEASE_NOTES | 37 +++++++++++++++++++++++++++++++++++-- setup.py | 2 +- 2 files changed, 36 insertions(+), 3 deletions(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 01b1286c29..3563f389c6 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -3,8 +3,41 @@ For more detailed information, please see the git log. These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html. -The latest version of easybuild-easyconfig provides 3,066 easyconfig files, for 551 different software packages -and 32 different (compiler) toolchains. +The latest version of easybuild-easyconfig provides 3,344 easyconfig files, for 581 different software packages, +32 different (compiler) toolchains and 6 software bundles. + + +v2.0.0 (March 6th 2015) +----------------------- + +feature + bugfix release +- added example easyconfig files for 29 new software packages: + bsoft (#1353), Coot (#1400), Cuby (#1258), DSRC (#1242), Exonerate (#568), fastqz (#1242), FSA (#568), fqzcomp (#1242), GAMESS-US (#1153, #1406), Grep (#1308), Hadoop (#1418), Hoard (#1415), IMB (#1284), ISL (#1389), jemalloc (#1416), libdwarf (#1283), libelf (#1283), MPC (#1310), multitail (#1327), Pmw (#1403), Quip (#1242), rCUDA (#720), SCALCE (#1242), SMALT (#568), STREAM (#1332), worker (#1307), Xerces-C++ (#1370), XQilla (#1370), ZPAQ (#1242) +- added easyconfigs for new (common) toolchains + foss/2015a (#1239), gompi/1.5.16 (#1380), gmvolf/1.7.20 (#1397), goolf/1.7.20 (#1294), intel/2015a (#1238), intel/2015.02 (#1393), iomkl/2015.01 (#1325), iomkl/2015.02 (#1401) +- added new bundles: Autotools (#1385) +- various other enhancements, including: + - don't define $LDSHARED in zlib easyconfigs (#1350) + - this fixes the long-standing "no version information available" issue with zlib + - see also https://github.com/hpcugent/easybuild-framework/issues/108 + - add unit test to check that all extra_options keys are defined in EasyConfig instance (#1378) + - add source MD5 checksums in all GCC easyconfigs (#1391) + - speeding up the unit tests by avoiding rereading of same easyconfig file (#1432) + - fix conflict detection in unit tests by considering build deps separately from runtime deps (#1447) + - fix toolchain for Bison build dep in MVAPICH2-1.9-iccifort-2011.13.367.eb easyconfig (#1448) + - use Bundle generic easyblock and 'bundle' moduleclass for software bundles (#1451) +- various bug fixes, including: + - revert version of Libint dependency to 1.1.4 in CP2K v2.5.1 easyconfig (#1144) + - added Java dependencies to EMBOSS easyconfigs (#1167) + - don't list 'lto' as a language in GCC easyconfigs (#1286) + - related to the fixes in the GCC easyblock, see hpcugent/easybuild-easyblocks#535 + - rename libint2 easyconfigs as Libint v2 easyconfigs (#1287) + - fix mpi4py source_urls in Python easyconfigs (#1306) + - consistently use CLooG 0.18.0 for GCC 4.8 series (#1392) + - rename GenomeAnalysisTk easyconfigs to GATK (#1399) + - include openssl-devel SLES11 OS dependency in cURL/MySQL/Python easyconfigs (#1422) + - add missing Perl dependency in parallel easyconfigs (#1430) + - correct name in BLAST+ easyconfigs (#1443) v1.16.1.0 (December 19th 2014) ------------------------------ diff --git a/setup.py b/setup.py index 6fdb0b240f..030d532e33 100644 --- a/setup.py +++ b/setup.py @@ -41,7 +41,7 @@ from distutils import log # note: release candidates should be versioned as a pre-release, e.g. "1.1rc1" # 1.1-rc1 would indicate a post-release, i.e., and update of 1.1, so beware! -VERSION = "2.0.0.0dev" +VERSION = "2.0.0" API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From 273c9e69d52a40ed5fc6f6c3e2b81c70c0c618fe Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 6 Mar 2015 17:34:26 +0100 Subject: [PATCH 0729/1217] fix moduleclass in HPCBIOS easyconfigs --- .../easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb | 2 +- .../h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb | 2 +- .../h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb | 2 +- .../HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb | 2 +- .../HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb | 2 +- .../HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb | 2 +- .../h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb | 2 +- .../h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb | 2 +- .../h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb | 2 +- .../HPCBIOS_Profilers-20130829-goolf-1.4.10.eb | 2 +- 10 files changed, 10 insertions(+), 10 deletions(-) diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb index cd3235cdf1..067ccdbe63 100644 --- a/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb @@ -14,4 +14,4 @@ dependencies = [ ('libtool', '2.4.5'), # 20150119 ] -moduleclass = 'bundle' +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb index 19dccf4c5a..b103b8110e 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb @@ -70,4 +70,4 @@ dependencies = [ ('ViennaRNA', '2.0.7'), ] -moduleclass = 'bundle' +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb index 34dc4faa24..e1d3fd7aa1 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb @@ -70,4 +70,4 @@ dependencies = [ ('ViennaRNA', '2.0.7'), ] -moduleclass = 'bundle' +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb index 209941c445..76836f3aed 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Debuggers/HPCBIOS_Debuggers-20130829-goolf-1.4.10.eb @@ -28,4 +28,4 @@ dependencies = [ ('icc', '2013.5.192', '', True), # provides IDB in ictce/5.3.0 compatible mode ] -moduleclass = 'bundle' +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb index a6bd997119..3925d65933 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb @@ -34,4 +34,4 @@ dependencies = [ # ('Rosetta', '3.5'), ] -moduleclass = 'bundle' +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb index d129c36c59..fc1b20fc8e 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb @@ -34,4 +34,4 @@ dependencies = [ # ('Rosetta', '3.5'), ] -moduleclass = 'bundle' +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb index d31e22cb47..e86ac02683 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goalf-1.1.0-no-OFED.eb @@ -29,4 +29,4 @@ dependencies = [ ('GSL', '1.15'), ] -moduleclass = 'bundle' +moduleclass = 'math' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb index cdf41a29ac..db4a026864 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-goolf-1.4.10.eb @@ -30,4 +30,4 @@ dependencies = [ ('SPRNG', '2.0b'), ] -moduleclass = 'bundle' +moduleclass = 'math' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb index ba99a2d9b6..b2b1287193 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb @@ -28,4 +28,4 @@ dependencies = [ ('SPRNG', '2.0b'), ] -moduleclass = 'bundle' +moduleclass = 'math' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb index 5b73516d37..7f92d9a951 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Profilers/HPCBIOS_Profilers-20130829-goolf-1.4.10.eb @@ -29,4 +29,4 @@ dependencies = [ ('binutils', '2.22'), # this one provides gprof ] -moduleclass = 'bundle' +moduleclass = 'perf' -- GitLab From 52c16302befaae6afbcf42eba058dd2a2993a218 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 6 Mar 2015 17:38:15 +0100 Subject: [PATCH 0730/1217] fix name in google-sparsehash easyconfig --- .../g/google-sparsehash/google-sparsehash-2.0.2-intel-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-intel-2015a.eb b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-intel-2015a.eb index e90039667a..07fe5cfe9d 100644 --- a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-intel-2015a.eb +++ b/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-intel-2015a.eb @@ -1,6 +1,6 @@ easyblock = 'ConfigureMake' -name = 'sparsehash' +name = 'google-sparsehash' version = '2.0.2' homepage = 'https://code.google.com/p/sparsehash/' -- GitLab From 7243320abf9bcc3eefa39230a5c3b9deb22082e1 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 6 Mar 2015 17:41:05 +0100 Subject: [PATCH 0731/1217] actually, the correct name is 'sparsehash'... --- .../sparsehash/sparsehash-goalf-1.1.0-no-OFED.eb} | 2 +- .../sparsehash/sparsehash-goolf-1.4.10.eb} | 2 +- .../sparsehash/sparsehash-ictce-4.0.6.eb} | 2 +- .../sparsehash/sparsehash-ictce-5.3.0.eb} | 2 +- .../sparsehash/sparsehash-intel-2015a.eb} | 2 +- 5 files changed, 5 insertions(+), 5 deletions(-) rename easybuild/easyconfigs/{g/google-sparsehash/google-sparsehash-2.0.2-goalf-1.1.0-no-OFED.eb => s/sparsehash/sparsehash-goalf-1.1.0-no-OFED.eb} (97%) rename easybuild/easyconfigs/{g/google-sparsehash/google-sparsehash-2.0.2-goolf-1.4.10.eb => s/sparsehash/sparsehash-goolf-1.4.10.eb} (97%) rename easybuild/easyconfigs/{g/google-sparsehash/google-sparsehash-2.0.2-ictce-4.0.6.eb => s/sparsehash/sparsehash-ictce-4.0.6.eb} (97%) rename easybuild/easyconfigs/{g/google-sparsehash/google-sparsehash-2.0.2-ictce-5.3.0.eb => s/sparsehash/sparsehash-ictce-5.3.0.eb} (97%) rename easybuild/easyconfigs/{g/google-sparsehash/google-sparsehash-2.0.2-intel-2015a.eb => s/sparsehash/sparsehash-intel-2015a.eb} (95%) diff --git a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-goalf-1.1.0-no-OFED.eb similarity index 97% rename from easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goalf-1.1.0-no-OFED.eb rename to easybuild/easyconfigs/s/sparsehash/sparsehash-goalf-1.1.0-no-OFED.eb index f3f86925e6..c85808d4fd 100644 --- a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/sparsehash/sparsehash-goalf-1.1.0-no-OFED.eb @@ -1,6 +1,6 @@ easyblock = 'ConfigureMake' -name = 'google-sparsehash' +name = 'sparsehash' version = '2.0.2' homepage = 'http://code.google.com/p/google-sparsehash/' diff --git a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-goolf-1.4.10.eb similarity index 97% rename from easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goolf-1.4.10.eb rename to easybuild/easyconfigs/s/sparsehash/sparsehash-goolf-1.4.10.eb index a0d26dcb60..3196f29d16 100644 --- a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/sparsehash/sparsehash-goolf-1.4.10.eb @@ -1,6 +1,6 @@ easyblock = 'ConfigureMake' -name = 'google-sparsehash' +name = 'sparsehash' version = '2.0.2' homepage = 'http://code.google.com/p/google-sparsehash/' diff --git a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-4.0.6.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-4.0.6.eb similarity index 97% rename from easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-4.0.6.eb rename to easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-4.0.6.eb index 8fa567fea4..11ae1d4125 100644 --- a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-4.0.6.eb @@ -1,6 +1,6 @@ easyblock = 'ConfigureMake' -name = 'google-sparsehash' +name = 'sparsehash' version = '2.0.2' homepage = 'http://code.google.com/p/google-sparsehash/' diff --git a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-5.3.0.eb similarity index 97% rename from easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-5.3.0.eb rename to easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-5.3.0.eb index 24f5fb8427..c01a0f11c0 100644 --- a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-5.3.0.eb @@ -1,6 +1,6 @@ easyblock = 'ConfigureMake' -name = 'google-sparsehash' +name = 'sparsehash' version = '2.0.2' homepage = 'http://code.google.com/p/google-sparsehash/' diff --git a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-intel-2015a.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-intel-2015a.eb similarity index 95% rename from easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-intel-2015a.eb rename to easybuild/easyconfigs/s/sparsehash/sparsehash-intel-2015a.eb index 07fe5cfe9d..e90039667a 100644 --- a/easybuild/easyconfigs/g/google-sparsehash/google-sparsehash-2.0.2-intel-2015a.eb +++ b/easybuild/easyconfigs/s/sparsehash/sparsehash-intel-2015a.eb @@ -1,6 +1,6 @@ easyblock = 'ConfigureMake' -name = 'google-sparsehash' +name = 'sparsehash' version = '2.0.2' homepage = 'https://code.google.com/p/sparsehash/' -- GitLab From e7881707d297158dc6a4bb46cb68aecb485595be Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 6 Mar 2015 17:43:25 +0100 Subject: [PATCH 0732/1217] include #1452 in release notes --- RELEASE_NOTES | 1 + 1 file changed, 1 insertion(+) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 3563f389c6..f5271cdbb6 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -38,6 +38,7 @@ feature + bugfix release - include openssl-devel SLES11 OS dependency in cURL/MySQL/Python easyconfigs (#1422) - add missing Perl dependency in parallel easyconfigs (#1430) - correct name in BLAST+ easyconfigs (#1443) + - fix name for sparsehash easyconfigs (#1452) v1.16.1.0 (December 19th 2014) ------------------------------ -- GitLab From ca5240c0e6c41bd7684d9b01539fb366e1c2dfa9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 6 Mar 2015 17:43:49 +0100 Subject: [PATCH 0733/1217] fix name of sparsehash dep in ABySS easyconfig --- .../a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb index 418f170236..cdc9d8c7ad 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb @@ -27,7 +27,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.bcgsc.ca/downloads/abyss/'] dependencies = [ - ('google-sparsehash', '2.0.2'), + ('sparsehash', '2.0.2'), ('Boost', '1.49.0', versionsuffix), ] -- GitLab From 4395afea302c4c99928e8bc51564bf4e4ed20f40 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 6 Mar 2015 18:15:50 +0100 Subject: [PATCH 0734/1217] fix 'sources' spec in sparsehash easyconfigs --- .../easyconfigs/s/sparsehash/sparsehash-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/s/sparsehash/sparsehash-goolf-1.4.10.eb | 3 ++- easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-5.3.0.eb | 3 +-- 4 files changed, 5 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-goalf-1.1.0-no-OFED.eb index c85808d4fd..8f5d666a8c 100644 --- a/easybuild/easyconfigs/s/sparsehash/sparsehash-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/sparsehash/sparsehash-goalf-1.1.0-no-OFED.eb @@ -10,7 +10,7 @@ description = """An extremely memory-efficient hash_map implementation. 2 bits/e toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'optarch': True} -sources = ['%s-%s.tar.gz' % (name.split('-')[1].lower(), version)] +sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://sparsehash.googlecode.com/files'] runtest = "check" diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-goolf-1.4.10.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-goolf-1.4.10.eb index 3196f29d16..2c1c772b75 100644 --- a/easybuild/easyconfigs/s/sparsehash/sparsehash-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/sparsehash/sparsehash-goolf-1.4.10.eb @@ -6,10 +6,11 @@ version = '2.0.2' homepage = 'http://code.google.com/p/google-sparsehash/' description = """An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed.""" + toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True} -sources = ['%s-%s.tar.gz' % (name.split('-')[1].lower(), version)] +sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://sparsehash.googlecode.com/files'] runtest = "check" diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-4.0.6.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-4.0.6.eb index 11ae1d4125..0e8273491c 100644 --- a/easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-4.0.6.eb @@ -10,7 +10,7 @@ description = """An extremely memory-efficient hash_map implementation. 2 bits/e toolchain = {'name': 'ictce', 'version': '4.0.6'} toolchainopts = {'optarch': True} -sources = ['%s-%s.tar.gz' % (name.split('-')[1].lower(), version)] +sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://sparsehash.googlecode.com/files'] #runtest = "check" # 1/7 tests fails (hashtable_test), so disabling 'make check' for now diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-5.3.0.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-5.3.0.eb index c01a0f11c0..ef04dcc09e 100644 --- a/easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-5.3.0.eb @@ -7,11 +7,10 @@ homepage = 'http://code.google.com/p/google-sparsehash/' description = """An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed.""" - toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True} -sources = ['%s-%s.tar.gz' % (name.split('-')[1].lower(), version)] +sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://sparsehash.googlecode.com/files'] #runtest = "check" # 1/7 tests fails (hashtable_test), so disabling 'make check' for now -- GitLab From dec0b64b36042bebb84fa52cf8eb919db03b5b18 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 6 Mar 2015 18:33:27 +0100 Subject: [PATCH 0735/1217] fix filenames for sparsehash easyconfigs --- ...f-1.1.0-no-OFED.eb => sparsehash-2.0.2-goalf-1.1.0-no-OFED.eb} | 0 ...parsehash-goolf-1.4.10.eb => sparsehash-2.0.2-goolf-1.4.10.eb} | 0 ...{sparsehash-ictce-4.0.6.eb => sparsehash-2.0.2-ictce-4.0.6.eb} | 0 ...{sparsehash-ictce-5.3.0.eb => sparsehash-2.0.2-ictce-5.3.0.eb} | 0 ...{sparsehash-intel-2015a.eb => sparsehash-2.0.2-intel-2015a.eb} | 0 5 files changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/s/sparsehash/{sparsehash-goalf-1.1.0-no-OFED.eb => sparsehash-2.0.2-goalf-1.1.0-no-OFED.eb} (100%) rename easybuild/easyconfigs/s/sparsehash/{sparsehash-goolf-1.4.10.eb => sparsehash-2.0.2-goolf-1.4.10.eb} (100%) rename easybuild/easyconfigs/s/sparsehash/{sparsehash-ictce-4.0.6.eb => sparsehash-2.0.2-ictce-4.0.6.eb} (100%) rename easybuild/easyconfigs/s/sparsehash/{sparsehash-ictce-5.3.0.eb => sparsehash-2.0.2-ictce-5.3.0.eb} (100%) rename easybuild/easyconfigs/s/sparsehash/{sparsehash-intel-2015a.eb => sparsehash-2.0.2-intel-2015a.eb} (100%) diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-goalf-1.1.0-no-OFED.eb similarity index 100% rename from easybuild/easyconfigs/s/sparsehash/sparsehash-goalf-1.1.0-no-OFED.eb rename to easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-goalf-1.1.0-no-OFED.eb diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-goolf-1.4.10.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-goolf-1.4.10.eb similarity index 100% rename from easybuild/easyconfigs/s/sparsehash/sparsehash-goolf-1.4.10.eb rename to easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-goolf-1.4.10.eb diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-4.0.6.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-ictce-4.0.6.eb similarity index 100% rename from easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-4.0.6.eb rename to easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-ictce-4.0.6.eb diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-5.3.0.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-ictce-5.3.0.eb similarity index 100% rename from easybuild/easyconfigs/s/sparsehash/sparsehash-ictce-5.3.0.eb rename to easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-ictce-5.3.0.eb diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-intel-2015a.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-intel-2015a.eb similarity index 100% rename from easybuild/easyconfigs/s/sparsehash/sparsehash-intel-2015a.eb rename to easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-intel-2015a.eb -- GitLab From 3a81d454733709a07dd1a450d6313d3d0d0f3fa2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 6 Mar 2015 18:50:21 +0100 Subject: [PATCH 0736/1217] minor fixes in release notes --- RELEASE_NOTES | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index f5271cdbb6..133fd064f1 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -15,7 +15,7 @@ feature + bugfix release bsoft (#1353), Coot (#1400), Cuby (#1258), DSRC (#1242), Exonerate (#568), fastqz (#1242), FSA (#568), fqzcomp (#1242), GAMESS-US (#1153, #1406), Grep (#1308), Hadoop (#1418), Hoard (#1415), IMB (#1284), ISL (#1389), jemalloc (#1416), libdwarf (#1283), libelf (#1283), MPC (#1310), multitail (#1327), Pmw (#1403), Quip (#1242), rCUDA (#720), SCALCE (#1242), SMALT (#568), STREAM (#1332), worker (#1307), Xerces-C++ (#1370), XQilla (#1370), ZPAQ (#1242) - added easyconfigs for new (common) toolchains foss/2015a (#1239), gompi/1.5.16 (#1380), gmvolf/1.7.20 (#1397), goolf/1.7.20 (#1294), intel/2015a (#1238), intel/2015.02 (#1393), iomkl/2015.01 (#1325), iomkl/2015.02 (#1401) -- added new bundles: Autotools (#1385) +- added new software bundle: Autotools (#1385) - various other enhancements, including: - don't define $LDSHARED in zlib easyconfigs (#1350) - this fixes the long-standing "no version information available" issue with zlib @@ -25,7 +25,7 @@ feature + bugfix release - speeding up the unit tests by avoiding rereading of same easyconfig file (#1432) - fix conflict detection in unit tests by considering build deps separately from runtime deps (#1447) - fix toolchain for Bison build dep in MVAPICH2-1.9-iccifort-2011.13.367.eb easyconfig (#1448) - - use Bundle generic easyblock and 'bundle' moduleclass for software bundles (#1451) + - use Bundle generic easyblock for HPCBIOS bundles and fix moduleclass (#1451) - various bug fixes, including: - revert version of Libint dependency to 1.1.4 in CP2K v2.5.1 easyconfig (#1144) - added Java dependencies to EMBOSS easyconfigs (#1167) -- GitLab From ae204ecf1c07f3ad9f67eeeda3ac287ed1d1dae6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 6 Mar 2015 20:47:04 +0100 Subject: [PATCH 0737/1217] add easyconfig file for EasyBuild v1.16.2 --- .../e/EasyBuild/EasyBuild-1.16.2.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb new file mode 100644 index 0000000000..8f07608f03 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb @@ -0,0 +1,29 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = "1.16.2" + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.0.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' -- GitLab From 28fcb4ccff4cecf3adfae89875b9b911b805fc8b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 6 Mar 2015 20:47:29 +0100 Subject: [PATCH 0738/1217] add easyconfig file for EasyBuild v2.0.0 --- .../e/EasyBuild/EasyBuild-2.0.0.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb new file mode 100644 index 0000000000..c0ecf89fd6 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb @@ -0,0 +1,31 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = "2.0.0" + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/v/vsc-base/', + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'vsc-base-2.0.3.tar.gz', + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' -- GitLab From fc1a90acbc5d9b86a71c069f69ff2f66d92372dc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 6 Mar 2015 21:06:57 +0100 Subject: [PATCH 0739/1217] bump version to v1.16.2.0, update release notes --- RELEASE_NOTES | 5 +++++ setup.py | 2 +- 2 files changed, 6 insertions(+), 1 deletion(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 01b1286c29..025b011209 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -6,6 +6,11 @@ These release notes can also be consulted at http://easybuild.readthedocs.org/en The latest version of easybuild-easyconfig provides 3,066 easyconfig files, for 551 different software packages and 32 different (compiler) toolchains. +v1.16.2.0 (March 6th 2015) +-------------------------- + +(no changes compared to v1.16.1.0, simple version bump to stay in sync with easybuild-easyblocks) + v1.16.1.0 (December 19th 2014) ------------------------------ diff --git a/setup.py b/setup.py index a37161620a..99ab5ad312 100644 --- a/setup.py +++ b/setup.py @@ -41,7 +41,7 @@ from distutils import log # note: release candidates should be versioned as a pre-release, e.g. "1.1rc1" # 1.1-rc1 would indicate a post-release, i.e., and update of 1.1, so beware! -VERSION = "1.16.1.0" +VERSION = "1.16.2.0" API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From 1214db6356a0d4ec9c55f393cec15de8523c2618 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 7 Mar 2015 18:55:17 +0100 Subject: [PATCH 0740/1217] bump version to v2.1.0dev --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 030d532e33..e23ed2d782 100644 --- a/setup.py +++ b/setup.py @@ -41,7 +41,7 @@ from distutils import log # note: release candidates should be versioned as a pre-release, e.g. "1.1rc1" # 1.1-rc1 would indicate a post-release, i.e., and update of 1.1, so beware! -VERSION = "2.0.0" +VERSION = "2.1.0dev" API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From c554949dd37aec86ae4ce8112bc2440a5bc65641 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 9 Mar 2015 11:30:59 +0100 Subject: [PATCH 0741/1217] bump vsc-base dep for v2.0.4 --- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb index c0ecf89fd6..2528629319 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb @@ -18,7 +18,7 @@ source_urls = [ ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ - 'vsc-base-2.0.3.tar.gz', + 'vsc-base-2.0.4.tar.gz', 'easybuild-framework-%(version)s.tar.gz', 'easybuild-easyblocks-%(version)s.tar.gz', 'easybuild-easyconfigs-%(version)s.tar.gz', -- GitLab From d6df555ece4aa4a319de43d2c851515ca585252a Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Tue, 3 Mar 2015 12:01:07 -0500 Subject: [PATCH 0742/1217] adding the foss-2015a with fpm easyconfig --- .../r/Ruby/Ruby-2.1.5-foss-2015a.eb | 41 +++++++++++++++++++ 1 file changed, 41 insertions(+) create mode 100644 easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb new file mode 100644 index 0000000000..f53f7ccb61 --- /dev/null +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb @@ -0,0 +1,41 @@ +# With <3 for EasyBuild +# +# EasyConfig for Ruby 2.1: +# ---------------------------------------------------------------------------- +# Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH +# License: MIT +# Authors: Aaron Zauner +# ---------------------------------------------------------------------------- + +name = 'Ruby' +version = '2.1.5' + +homepage = 'https://www.ruby-lang.org' +description = """Ruby is a dynamic, open source programming language with + a focus on simplicity and productivity. It has an elegant syntax that is + natural to read and easy to write.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://cache.ruby-lang.org/pub/ruby/'] + +sanity_check_paths = { + 'files': ['bin/ruby', 'bin/rake', 'bin/gem', 'bin/testrb', 'bin/erb', + 'bin/ri', 'bin/irb', 'bin/rdoc', 'lib/libruby.so.2.1.0', + 'lib/libruby-static.a', 'lib/libruby.so'], + 'dirs': ['lib/ruby/2.1.0', 'lib/ruby/gems', 'lib/pkgconfig', 'include/ruby-2.1.0'] +} + +configopts = "--disable-install-doc --enable-shared" + +moduleclass = 'lang' + + +exts_list = [ + ('fpm', '1.3.3', { + 'source_tmpl': 'fpm-1.3.3.gem', + 'source_urls': ['http://rubygems.org/downloads/'], + }), + +] -- GitLab From c3c8683809ff1c8bdf8e6cb3c07cd452922d5c7e Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Tue, 3 Mar 2015 15:14:34 -0500 Subject: [PATCH 0743/1217] moving fpm to bundle separate from the base ruby install --- .../Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb | 31 +++++++++++++++++++ .../r/Ruby/Ruby-2.1.5-foss-2015a.eb | 8 ----- 2 files changed, 31 insertions(+), 8 deletions(-) create mode 100644 easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb diff --git a/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb b/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb new file mode 100644 index 0000000000..e9351e062d --- /dev/null +++ b/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb @@ -0,0 +1,31 @@ +easyblock = 'Bundle' + +name = 'Ruby-FPM' +rubyver = '2.1.5' +version = '%s-1.0.0' % rubyver + +homepage = 'https://www.ruby-lang.org' +description = """Ruby is a dynamic, open source programming language with + a focus on simplicity and productivity. It has an elegant syntax that is + natural to read and easy to write.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +# these are extensions for Ruby +exts_defaultclass = 'RubyGem' +exts_filter = ("gem list %(ext_name)s -i", "") + +dependencies = [ + ('Ruby', rubyver), +] + +name_tmpl = '%(name)s-%(version)s.gem' +ext_options = { + 'source_urls': [ + 'http://rubygems.org/downloads/', # gem archive + ], + 'source_tmpl': name_tmpl, +} +exts_list = [ + ('fpm', '1.3.3', ext_options), +] diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb index f53f7ccb61..c585ab1d31 100644 --- a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb @@ -31,11 +31,3 @@ configopts = "--disable-install-doc --enable-shared" moduleclass = 'lang' - -exts_list = [ - ('fpm', '1.3.3', { - 'source_tmpl': 'fpm-1.3.3.gem', - 'source_urls': ['http://rubygems.org/downloads/'], - }), - -] -- GitLab From 52eed5d1cc5b7a1e5babfb57488ef725532f066f Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Tue, 3 Mar 2015 21:42:57 -0500 Subject: [PATCH 0744/1217] adding dependency gems --- .../r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb b/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb index e9351e062d..d664b9bdb3 100644 --- a/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb +++ b/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb @@ -27,5 +27,11 @@ ext_options = { 'source_tmpl': name_tmpl, } exts_list = [ - ('fpm', '1.3.3', ext_options), + ('fpm', '1.3.3', ext_options), + ('json', '1.8.2', ext_options), + ('cabin', '0.7.1', ext_options), + ('backports', '3.6.4', ext_options), + ('arr-pm', '0.0.9', ext_options), + ('clamp', '0.6.4', ext_options), + ('ffi', '1.9.6', ext_options), ] -- GitLab From 720160c0eb33b58802856a76ba723af6185f00e2 Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Tue, 3 Mar 2015 21:57:58 -0500 Subject: [PATCH 0745/1217] missed childprocess dep --- .../easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb b/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb index d664b9bdb3..c4f32ff0e9 100644 --- a/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb +++ b/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb @@ -34,4 +34,5 @@ exts_list = [ ('arr-pm', '0.0.9', ext_options), ('clamp', '0.6.4', ext_options), ('ffi', '1.9.6', ext_options), + ('childprocess', '0.5.5', ext_options), ] -- GitLab From 6f768482ad7e828f631cf3cf98dc6a04e732e5db Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Wed, 4 Mar 2015 10:15:32 -0500 Subject: [PATCH 0746/1217] reorder dependencies to work with local only gem installer --- .../r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb b/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb index c4f32ff0e9..1aa58a2ac6 100644 --- a/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb +++ b/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb @@ -27,12 +27,12 @@ ext_options = { 'source_tmpl': name_tmpl, } exts_list = [ - ('fpm', '1.3.3', ext_options), + ('ffi', '1.9.6', ext_options), + ('childprocess', '0.5.5', ext_options), ('json', '1.8.2', ext_options), ('cabin', '0.7.1', ext_options), ('backports', '3.6.4', ext_options), ('arr-pm', '0.0.9', ext_options), ('clamp', '0.6.4', ext_options), - ('ffi', '1.9.6', ext_options), - ('childprocess', '0.5.5', ext_options), + ('fpm', '1.3.3', ext_options), ] -- GitLab From 7ea5926e46c0e53ed04d704f91c17ade7ed7847f Mon Sep 17 00:00:00 2001 From: pescobar Date: Tue, 10 Mar 2015 15:53:19 +0100 Subject: [PATCH 0747/1217] blast+ 2.2.30 and patch --- .../b/BLAST/BLAST-2.2.30-goolf-1.4.10.eb | 38 +++++++++++++++++++ .../easyconfigs/b/BLAST/blast-2.2.30+.patch | 12 ++++++ 2 files changed, 50 insertions(+) create mode 100644 easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-goolf-1.4.10.eb create mode 100644 easybuild/easyconfigs/b/BLAST/blast-2.2.30+.patch diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-goolf-1.4.10.eb new file mode 100644 index 0000000000..1445f24f31 --- /dev/null +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-goolf-1.4.10.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'BLAST' +version = "2.2.30" + +homepage = 'http://blast.ncbi.nlm.nih.gov/' +description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm + for comparing primary biological sequence information, such as the amino-acid + sequences of different proteins or the nucleotides of DNA sequences.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = ['ncbi-blast-%(version)s+-src.tar.gz'] +source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] + +patches = ['blast-2.2.30+.patch'] + +dependencies = [('Boost', '1.51.0')] + +configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' + +sanity_check_paths = { + 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], + 'dirs': [] +} + +moduleclass = 'bio' + diff --git a/easybuild/easyconfigs/b/BLAST/blast-2.2.30+.patch b/easybuild/easyconfigs/b/BLAST/blast-2.2.30+.patch new file mode 100644 index 0000000000..72a5eeeecc --- /dev/null +++ b/easybuild/easyconfigs/b/BLAST/blast-2.2.30+.patch @@ -0,0 +1,12 @@ +diff -ru ncbi-blast-2.2.30+-src.orig/c++/src/build-system/Makefile.in.top ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.top +--- ncbi-blast-2.2.30+-src.orig/c++/src/build-system/Makefile.in.top 2014-08-01 20:43:59.000000000 +0200 ++++ ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.top 2015-03-10 15:11:09.140548221 +0100 +@@ -46,7 +46,7 @@ + -rm -f $(libdir)/lib*-static.a + cd $(libdir) && \ + for x in *.a; do \ +- $(LN_S) "$$x" "`/usr/bin/basename \"$$x\" .a`-static.a"; \ ++ $(LN_S) "$$x" "`basename \"$$x\" .a`-static.a"; \ + done + cd $(includedir0) && find * -name CVS -prune -o -print |\ + cpio -pd $(pincludedir) -- GitLab From c4aef62dc56c7d908b34ae09442013061e844296 Mon Sep 17 00:00:00 2001 From: pescobar Date: Wed, 11 Mar 2015 10:57:13 +0100 Subject: [PATCH 0748/1217] moved easyconfigs to BLAST+ folder --- .../BLAST+-2.2.30-goolf-1.4.10.eb} | 2 +- easybuild/easyconfigs/b/{BLAST => BLAST+}/blast-2.2.30+.patch | 0 2 files changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/b/{BLAST/BLAST-2.2.30-goolf-1.4.10.eb => BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb} (98%) rename easybuild/easyconfigs/b/{BLAST => BLAST+}/blast-2.2.30+.patch (100%) diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb similarity index 98% rename from easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-goolf-1.4.10.eb rename to easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb index 1445f24f31..18f254d821 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb @@ -10,7 +10,7 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## -name = 'BLAST' +name = 'BLAST+' version = "2.2.30" homepage = 'http://blast.ncbi.nlm.nih.gov/' diff --git a/easybuild/easyconfigs/b/BLAST/blast-2.2.30+.patch b/easybuild/easyconfigs/b/BLAST+/blast-2.2.30+.patch similarity index 100% rename from easybuild/easyconfigs/b/BLAST/blast-2.2.30+.patch rename to easybuild/easyconfigs/b/BLAST+/blast-2.2.30+.patch -- GitLab From 6a684729ace61acba4886e469c161522a11f4d26 Mon Sep 17 00:00:00 2001 From: pescobar Date: Wed, 11 Mar 2015 10:59:34 +0100 Subject: [PATCH 0749/1217] added easyblock=configuremake --- easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb index 18f254d821..e4849b66af 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb @@ -10,6 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html ## +easyblock = 'ConfigureMake' + name = 'BLAST+' version = "2.2.30" -- GitLab From 687239def20791c6b071ef734e6793b85c255389 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 11 Mar 2015 12:45:47 +0100 Subject: [PATCH 0750/1217] Disable makeinfo for GDB --- easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb b/easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb index a1ba41f0f4..f862997251 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb @@ -13,6 +13,7 @@ toolchain = {'name': 'GCC', 'version': '4.9.2'} dependencies = [('ncurses', '5.9')] +configopts = 'MAKEINFO=false' parallel = 1 sanity_check_paths = { -- GitLab From 135e87c38807b71c94d6a8fb8e2aba8d97572ae9 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 11 Mar 2015 13:46:09 +0100 Subject: [PATCH 0751/1217] Another try for makeinfo --- easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb b/easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb index f862997251..5b0f7725b7 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb @@ -13,7 +13,7 @@ toolchain = {'name': 'GCC', 'version': '4.9.2'} dependencies = [('ncurses', '5.9')] -configopts = 'MAKEINFO=false' +configopts = 'MAKEINFO=true' parallel = 1 sanity_check_paths = { -- GitLab From 8052b79ff25cfeef59f1d949e3abab732a2e62fe Mon Sep 17 00:00:00 2001 From: pescobar Date: Wed, 11 Mar 2015 13:58:39 +0100 Subject: [PATCH 0752/1217] added comment to patch file --- easybuild/easyconfigs/b/BLAST+/blast-2.2.30+.patch | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/b/BLAST+/blast-2.2.30+.patch b/easybuild/easyconfigs/b/BLAST+/blast-2.2.30+.patch index 72a5eeeecc..b4d018091b 100644 --- a/easybuild/easyconfigs/b/BLAST+/blast-2.2.30+.patch +++ b/easybuild/easyconfigs/b/BLAST+/blast-2.2.30+.patch @@ -1,3 +1,5 @@ +/* don't hardcode path to basename - Pablo Escobar (sciCORE, SIB, UniBAS) */ + diff -ru ncbi-blast-2.2.30+-src.orig/c++/src/build-system/Makefile.in.top ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.top --- ncbi-blast-2.2.30+-src.orig/c++/src/build-system/Makefile.in.top 2014-08-01 20:43:59.000000000 +0200 +++ ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.top 2015-03-10 15:11:09.140548221 +0100 -- GitLab From 8d702807a85cd8ff96789f662b6f4a074c01032a Mon Sep 17 00:00:00 2001 From: pescobar Date: Wed, 11 Mar 2015 14:07:17 +0100 Subject: [PATCH 0753/1217] updated patch comment --- easybuild/easyconfigs/b/BLAST+/blast-2.2.30+.patch | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/BLAST+/blast-2.2.30+.patch b/easybuild/easyconfigs/b/BLAST+/blast-2.2.30+.patch index b4d018091b..ee0c779bf9 100644 --- a/easybuild/easyconfigs/b/BLAST+/blast-2.2.30+.patch +++ b/easybuild/easyconfigs/b/BLAST+/blast-2.2.30+.patch @@ -1,4 +1,4 @@ -/* don't hardcode path to basename - Pablo Escobar (sciCORE, SIB, UniBAS) */ +don't hardcode path to basename - Pablo Escobar (sciCORE, SIB, UniBAS) diff -ru ncbi-blast-2.2.30+-src.orig/c++/src/build-system/Makefile.in.top ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.top --- ncbi-blast-2.2.30+-src.orig/c++/src/build-system/Makefile.in.top 2014-08-01 20:43:59.000000000 +0200 -- GitLab From 21c21fbec35b41aef3e069522a80b79c7c6f5336 Mon Sep 17 00:00:00 2001 From: pescobar Date: Wed, 11 Mar 2015 14:21:08 +0100 Subject: [PATCH 0754/1217] changed patch name updated easyconfig --- easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb | 2 +- .../b/BLAST+/{blast-2.2.30+.patch => blast+_2.2.30.patch} | 0 2 files changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/b/BLAST+/{blast-2.2.30+.patch => blast+_2.2.30.patch} (100%) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb index e4849b66af..ef50a95d00 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb @@ -25,7 +25,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} sources = ['ncbi-blast-%(version)s+-src.tar.gz'] source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] -patches = ['blast-2.2.30+.patch'] +patches = ['blast+_%(version)s.patch'] dependencies = [('Boost', '1.51.0')] diff --git a/easybuild/easyconfigs/b/BLAST+/blast-2.2.30+.patch b/easybuild/easyconfigs/b/BLAST+/blast+_2.2.30.patch similarity index 100% rename from easybuild/easyconfigs/b/BLAST+/blast-2.2.30+.patch rename to easybuild/easyconfigs/b/BLAST+/blast+_2.2.30.patch -- GitLab From 499648742fd8267915e29358da2ab07f967922b5 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 11 Mar 2015 14:24:15 +0100 Subject: [PATCH 0755/1217] Final fix? for missing makeinfo --- easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb | 3 ++- .../g/GDB/GDB-7.9-missing-makeinfo.patch | 13 +++++++++++++ 2 files changed, 15 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/g/GDB/GDB-7.9-missing-makeinfo.patch diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb b/easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb index 5b0f7725b7..cfd83fc09a 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/GDB/GDB-7.9-GCC-4.9.2.eb @@ -13,7 +13,8 @@ toolchain = {'name': 'GCC', 'version': '4.9.2'} dependencies = [('ncurses', '5.9')] -configopts = 'MAKEINFO=true' +patches = ['GDB-%(version)s-missing-makeinfo.patch'] + parallel = 1 sanity_check_paths = { diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.9-missing-makeinfo.patch b/easybuild/easyconfigs/g/GDB/GDB-7.9-missing-makeinfo.patch new file mode 100644 index 0000000000..6f22a427df --- /dev/null +++ b/easybuild/easyconfigs/g/GDB/GDB-7.9-missing-makeinfo.patch @@ -0,0 +1,13 @@ +# Don't let the make fail when makeinfo is not found +diff -ur gdb-7.9.orig/missing gdb-7.9/missing +--- gdb-7.9.orig/missing 2015-02-19 12:58:08.000000000 +0100 ++++ gdb-7.9/missing 2015-03-11 14:22:52.000000000 +0100 +@@ -204,7 +204,7 @@ + + # Propagate the correct exit status (expected to be 127 for a program + # not found, 63 for a program that failed due to version mismatch). +-exit $st ++exit 0 + + # Local variables: + # eval: (add-hook 'write-file-hooks 'time-stamp) -- GitLab From 393442a5357700ecde7d19cbf89c3f5f801a2876 Mon Sep 17 00:00:00 2001 From: pescobar Date: Wed, 11 Mar 2015 15:29:49 +0100 Subject: [PATCH 0756/1217] added comment about the patch --- easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/b/BLAST+/blast+_2.2.30.patch | 2 ++ 2 files changed, 4 insertions(+) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb index ef50a95d00..f306341fc4 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb @@ -25,6 +25,8 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} sources = ['ncbi-blast-%(version)s+-src.tar.gz'] source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] +# patch not needed in BLAST+ 2.2.31 or higher +# http://www.ncbi.nlm.nih.gov/viewvc/v1?view=revision&revision=65204 patches = ['blast+_%(version)s.patch'] dependencies = [('Boost', '1.51.0')] diff --git a/easybuild/easyconfigs/b/BLAST+/blast+_2.2.30.patch b/easybuild/easyconfigs/b/BLAST+/blast+_2.2.30.patch index ee0c779bf9..d5d2d3b8b7 100644 --- a/easybuild/easyconfigs/b/BLAST+/blast+_2.2.30.patch +++ b/easybuild/easyconfigs/b/BLAST+/blast+_2.2.30.patch @@ -1,4 +1,6 @@ don't hardcode path to basename - Pablo Escobar (sciCORE, SIB, UniBAS) +This patch is not needed in BLAST+ version 2.2.31 or higher +http://www.ncbi.nlm.nih.gov/viewvc/v1?view=revision&revision=65204 diff -ru ncbi-blast-2.2.30+-src.orig/c++/src/build-system/Makefile.in.top ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.top --- ncbi-blast-2.2.30+-src.orig/c++/src/build-system/Makefile.in.top 2014-08-01 20:43:59.000000000 +0200 -- GitLab From 87ffeb251547e84febfef08a4b15bd8094a5e34c Mon Sep 17 00:00:00 2001 From: pescobar Date: Wed, 11 Mar 2015 15:46:22 +0100 Subject: [PATCH 0757/1217] switched to http download url --- easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb index f306341fc4..3fd6b2b7dd 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb @@ -23,7 +23,7 @@ description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm toolchain = {'name': 'goolf', 'version': '1.4.10'} sources = ['ncbi-blast-%(version)s+-src.tar.gz'] -source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] +source_urls = ['http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] # patch not needed in BLAST+ 2.2.31 or higher # http://www.ncbi.nlm.nih.gov/viewvc/v1?view=revision&revision=65204 -- GitLab From aae9e84586e55b47a7dbe0a047c4036b1c1d247c Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 11 Mar 2015 17:40:41 +0100 Subject: [PATCH 0758/1217] Extend comments in patch --- easybuild/easyconfigs/g/GDB/GDB-7.9-missing-makeinfo.patch | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.9-missing-makeinfo.patch b/easybuild/easyconfigs/g/GDB/GDB-7.9-missing-makeinfo.patch index 6f22a427df..2e1e633cca 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.9-missing-makeinfo.patch +++ b/easybuild/easyconfigs/g/GDB/GDB-7.9-missing-makeinfo.patch @@ -1,4 +1,9 @@ -# Don't let the make fail when makeinfo is not found +# Don't let the make fail when makeinfo is not found. +# The missing script is supposed to handle missing deps for the build, +# but by return the actual exit code, the build will still fail. +# In GDB 7.8, they always return 0 as exit code. This patch does the +# same. +# Bug report at https://sourceware.org/bugzilla/show_bug.cgi?id=18113 diff -ur gdb-7.9.orig/missing gdb-7.9/missing --- gdb-7.9.orig/missing 2015-02-19 12:58:08.000000000 +0100 +++ gdb-7.9/missing 2015-03-11 14:22:52.000000000 +0100 -- GitLab From a19b1f5ac2222ae1c1e9df1ecc58ca8160bd2cbd Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 11 Mar 2015 17:43:50 +0100 Subject: [PATCH 0759/1217] Fix typo --- easybuild/easyconfigs/g/GDB/GDB-7.9-missing-makeinfo.patch | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.9-missing-makeinfo.patch b/easybuild/easyconfigs/g/GDB/GDB-7.9-missing-makeinfo.patch index 2e1e633cca..68ed99f5bb 100644 --- a/easybuild/easyconfigs/g/GDB/GDB-7.9-missing-makeinfo.patch +++ b/easybuild/easyconfigs/g/GDB/GDB-7.9-missing-makeinfo.patch @@ -1,6 +1,6 @@ # Don't let the make fail when makeinfo is not found. # The missing script is supposed to handle missing deps for the build, -# but by return the actual exit code, the build will still fail. +# but by returning the actual exit code, the build will still fail. # In GDB 7.8, they always return 0 as exit code. This patch does the # same. # Bug report at https://sourceware.org/bugzilla/show_bug.cgi?id=18113 -- GitLab From 0315cb76b9039b530c7052ea9d12a2a446a9c119 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Wed, 11 Mar 2015 21:30:05 +0100 Subject: [PATCH 0760/1217] Dummy --- easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2015a.eb | 1 + 1 file changed, 1 insertion(+) create mode 100644 easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2015a.eb diff --git a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2015a.eb b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2015a.eb new file mode 100644 index 0000000000..421376db9e --- /dev/null +++ b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2015a.eb @@ -0,0 +1 @@ +dummy -- GitLab From 55c7f0c38dd71ea9e5ea4a552350e4071db64dd2 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Wed, 11 Mar 2015 21:50:00 +0100 Subject: [PATCH 0761/1217] METIS 5.1.0 with foss-2015a --- .../c/CMake/CMake-3.1.3-foss-2015a.eb | 22 +++++++++++++++++++ .../m/METIS/METIS-5.1.0-foss-2015a.eb | 21 +++++++++++++++++- 2 files changed, 42 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.1.3-foss-2015a.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.1.3-foss-2015a.eb b/easybuild/easyconfigs/c/CMake/CMake-3.1.3-foss-2015a.eb new file mode 100644 index 0000000000..543c9cc79f --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.1.3-foss-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.1.3' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2015a.eb b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2015a.eb index 421376db9e..f49db11981 100644 --- a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2015a.eb +++ b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2015a.eb @@ -1 +1,20 @@ -dummy +name = 'METIS' +version = '5.1.0' + +homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/metis/overview' +description = """METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, + and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the + multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD', +] + +builddependencies = [('CMake', '3.1.3')] + +moduleclass = 'math' -- GitLab From be5769137332cb9a52ceba26a93dbebcbade5bad Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Wed, 11 Mar 2015 22:05:25 +0100 Subject: [PATCH 0762/1217] Dummy --- .../easyconfigs/b/beagle-lib/beagle-lib-20141202-intel-2015a.eb | 1 + 1 file changed, 1 insertion(+) create mode 100644 easybuild/easyconfigs/b/beagle-lib/beagle-lib-20141202-intel-2015a.eb diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20141202-intel-2015a.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20141202-intel-2015a.eb new file mode 100644 index 0000000000..421376db9e --- /dev/null +++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20141202-intel-2015a.eb @@ -0,0 +1 @@ +dummy -- GitLab From 267de71bffdb02e149df2cdfd6201a93469ebbf2 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Wed, 11 Mar 2015 22:56:42 +0100 Subject: [PATCH 0763/1217] beagle-lib 20141202 aka r1261 with intel-2015a --- .../beagle-lib-20141202-intel-2015a.eb | 37 ++++++++++++++++++- 1 file changed, 36 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20141202-intel-2015a.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20141202-intel-2015a.eb index 421376db9e..6958ac7224 100644 --- a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20141202-intel-2015a.eb +++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20141202-intel-2015a.eb @@ -1 +1,36 @@ -dummy +easyblock = 'ConfigureMake' + +name = 'beagle-lib' +#revision r1261 +version = '20141202' + +homepage = 'http://code.google.com/p/beagle-lib/' +description = """beagle-lib is a high-performance library that can perform the core + calculations at the heart of most Bayesian and Maximum Likelihood + phylogenetics packages.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +# there is no tarball provided, only SVN checkout through: +# svn checkout http://beagle-lib.googlecode.com/svn/trunk/ beagle-lib +sources = [SOURCE_TGZ] + +dependencies = [ + ('Java', '1.8.0_31', '', True), + ('Autoconf', '2.69') +] + +preconfigopts = './autogen.sh && ' + +# parallel build does not work +parallel = 1 + +sanity_check_paths = { + 'files': ["include/libhmsbeagle-1/libhmsbeagle/%s" % includefile + for includefile in ["beagle.h", "platform.h"]] + + ["lib/libhmsbeagle%s.so" % libfile + for libfile in ["-cpu", "-cpu-sse", "-jni" ,""]], + 'dirs' : [] +} + +moduleclass = 'numlib' -- GitLab From 1c37e81e008046dd3187a6bfda113e924063485a Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Thu, 12 Mar 2015 11:12:39 +0100 Subject: [PATCH 0765/1217] remove more whitespace --- easybuild/easyconfigs/g/gtest/gtest-1.6.0-intel-2014b.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/g/gtest/gtest-1.6.0-intel-2014b.eb b/easybuild/easyconfigs/g/gtest/gtest-1.6.0-intel-2014b.eb index 7e01fd3fc1..785c4e7264 100644 --- a/easybuild/easyconfigs/g/gtest/gtest-1.6.0-intel-2014b.eb +++ b/easybuild/easyconfigs/g/gtest/gtest-1.6.0-intel-2014b.eb @@ -13,7 +13,6 @@ source_urls = ['https://googletest.googlecode.com/files'] with_configure = True - files_to_copy = ['lib', 'include'] sanity_check_paths={ -- GitLab From 2f3137a843dc1fba6b210697efbb01911af576f7 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 12 Mar 2015 12:24:23 +0100 Subject: [PATCH 0766/1217] Lockfile needs pbr --- easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb | 3 +++ easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb | 3 +++ easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb | 3 +++ 3 files changed, 9 insertions(+) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb index ee34812203..551b551518 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb @@ -55,6 +55,9 @@ exts_list = [ ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], }), + ('pbr', '0.10.7', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + }), ('lockfile', '0.10.2', { 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb index 51b20dc349..476f839933 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb @@ -55,6 +55,9 @@ exts_list = [ ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], }), + ('pbr', '0.10.7', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + }), ('lockfile', '0.10.2', { 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb index 9107501405..70fcbf0f5a 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb @@ -58,6 +58,9 @@ exts_list = [ ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], }), + ('pbr', '0.10.7', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + }), ('lockfile', '0.10.2', { 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], }), -- GitLab From 145a8d36f0e0b5a9d1e70abeb9c9a37d74b8151d Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 12 Mar 2015 12:29:10 +0100 Subject: [PATCH 0767/1217] dummy --- .../m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb | 1 + 1 file changed, 1 insertion(+) create mode 100644 easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..421376db9e --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb @@ -0,0 +1 @@ +dummy -- GitLab From 95fea9259170e69655d68e0774868a690e210048 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 12 Mar 2015 14:08:54 +0100 Subject: [PATCH 0768/1217] Matplotlib 1.4.3-Python-2.7.9 with deps --- .../f/freetype/freetype-2.5.5-foss-2015a.eb | 21 ++++++++++ .../f/freetype/freetype-2.5.5-intel-2015a.eb | 21 ++++++++++ .../m/matplotlib/Qhull-intel-fix.patch | 22 ++++++++++ ...atplotlib-1.4.3-foss-2015a-Python-2.7.9.eb | 39 +++++++++++++++++ ...tplotlib-1.4.3-intel-2015a-Python-2.7.9.eb | 42 ++++++++++++++++++- .../mock-1.0.1-foss-2015a-Python-2.7.9.eb | 35 ++++++++++++++++ .../mock-1.0.1-intel-2015a-Python-2.7.9.eb | 35 ++++++++++++++++ .../pytz-2014.10-foss-2015a-Python-2.7.9.eb | 31 ++++++++++++++ .../pytz-2014.10-intel-2015a-Python-2.7.9.eb | 31 ++++++++++++++ 9 files changed, 276 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/f/freetype/freetype-2.5.5-foss-2015a.eb create mode 100644 easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015a.eb create mode 100644 easybuild/easyconfigs/m/matplotlib/Qhull-intel-fix.patch create mode 100644 easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/m/mock/mock-1.0.1-foss-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/m/mock/mock-1.0.1-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/p/pytz/pytz-2014.10-foss-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/p/pytz/pytz-2014.10-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.5-foss-2015a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-foss-2015a.eb new file mode 100644 index 0000000000..a62c8bab17 --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-foss-2015a.eb @@ -0,0 +1,21 @@ +name = 'freetype' +version = '2.5.5' + +homepage = 'http://freetype.org' +description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and + portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display + servers, font conversion tools, text image generation tools, and many other products as well.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('libpng', '1.6.16')] + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015a.eb new file mode 100644 index 0000000000..3f93bd6070 --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015a.eb @@ -0,0 +1,21 @@ +name = 'freetype' +version = '2.5.5' + +homepage = 'http://freetype.org' +description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and + portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display + servers, font conversion tools, text image generation tools, and many other products as well.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('libpng', '1.6.16')] + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/matplotlib/Qhull-intel-fix.patch b/easybuild/easyconfigs/m/matplotlib/Qhull-intel-fix.patch new file mode 100644 index 0000000000..d0e795131e --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/Qhull-intel-fix.patch @@ -0,0 +1,22 @@ +# they use some weird template thing in pure C code to avoid +# warnings, I think, but only for intel compilers +# We remove the special case for intel and use the general one +# Ward Poelmans +--- matplotlib-1.4.3/extern/qhull/qhull_a.h.org 2012-01-26 04:32:07.000000000 +0100 ++++ matplotlib-1.4.3/extern/qhull/qhull_a.h 2014-10-01 11:49:18.000000000 +0200 +@@ -102,13 +102,8 @@ + #elif defined(__MWERKS__) && defined(__INTEL__) + # define QHULL_OS_WIN + #endif +-#if defined(__INTEL_COMPILER) && !defined(QHULL_OS_WIN) +-template +-inline void qhullUnused(T &x) { (void)x; } +-# define QHULL_UNUSED(x) qhullUnused(x); +-#else +-# define QHULL_UNUSED(x) (void)x; +-#endif ++ ++#define QHULL_UNUSED(x) (void)x; + + /***** -libqhull.c prototypes (alphabetical after qhull) ********************/ + diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..2a6d8ee18f --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb @@ -0,0 +1,39 @@ +easyblock = "PythonPackage" + +name = 'matplotlib' +version = '1.4.3' + +homepage = 'http://matplotlib.org' +description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of + hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python + and ipython shell, web application servers, and six graphical user interface toolkits.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +python = "Python" +pythonversion = '2.7.9' +pyshortver = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('mock', '1.0.1', versionsuffix), + ('pytz', '2014.10', versionsuffix), + ('zlib', '1.2.8'), + ('freetype', '2.5.5'), + ('libpng', '1.6.16'), +] + +# is this actually needed? the PythonPackage will check if import matplotlib succeeds, which is as good as this? +pyprefix = 'lib/python%s/site-packages' % pyshortver +eggname = 'matplotlib-%%(version)s-py%s-linux-x86_64.egg' % pyshortver +sanity_check_paths = { + 'files': [], + 'dirs': [('%s/%%(name)s' % pyprefix, '%s/%s' % (pyprefix, eggname))], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb index 421376db9e..5c56e9a7ef 100644 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb @@ -1 +1,41 @@ -dummy +easyblock = "PythonPackage" + +name = 'matplotlib' +version = '1.4.3' + +homepage = 'http://matplotlib.org' +description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of + hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python + and ipython shell, web application servers, and six graphical user interface toolkits.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +patches = [('Qhull-intel-fix.patch')] + +python = "Python" +pythonversion = '2.7.9' +pyshortver = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('mock', '1.0.1', versionsuffix), + ('pytz', '2014.10', versionsuffix), + ('zlib', '1.2.8'), + ('freetype', '2.5.5'), + ('libpng', '1.6.16'), +] + +# is this actually needed? the PythonPackage will check if import matplotlib succeeds, which is as good as this? +pyprefix = 'lib/python%s/site-packages' % pyshortver +eggname = 'matplotlib-%%(version)s-py%s-linux-x86_64.egg' % pyshortver +sanity_check_paths = { + 'files': [], + 'dirs': [('%s/%%(name)s' % pyprefix, '%s/%s' % (pyprefix, eggname))], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/mock/mock-1.0.1-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/m/mock/mock-1.0.1-foss-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..baada2e6cf --- /dev/null +++ b/easybuild/easyconfigs/m/mock/mock-1.0.1-foss-2015a-Python-2.7.9.eb @@ -0,0 +1,35 @@ +easyblock = "PythonPackage" + +name = 'mock' +version = '1.0.1' + +homepage = 'https://pypi.python.org/pypi/mock' +description = """A Python Mocking and Patching Library for Testing. + mock is a library for testing in Python. + It allows you to replace parts of your system under test + with mock objects and make assertions about how they have been used.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['http://pypi.python.org/packages/source/%s/%s/' % (name[0],name)] +sources = [SOURCE_TAR_GZ] + +python = "Python" +pythonversion = '2.7.9' +#mock is part of Python 3.3 +pyshortver = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), +] + +pyprefix = 'lib/python%s/site-packages' % pyshortver +eggname = '%%(name)s-%%(version)s-py%s.egg' % pyshortver +sanity_check_paths = { + 'files': [], + 'dirs': [('%s/%%(name)s' % pyprefix, '%s/%s' % (pyprefix, eggname))], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/mock/mock-1.0.1-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/m/mock/mock-1.0.1-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..afc6e7f4bc --- /dev/null +++ b/easybuild/easyconfigs/m/mock/mock-1.0.1-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,35 @@ +easyblock = "PythonPackage" + +name = 'mock' +version = '1.0.1' + +homepage = 'https://pypi.python.org/pypi/mock' +description = """A Python Mocking and Patching Library for Testing. + mock is a library for testing in Python. + It allows you to replace parts of your system under test + with mock objects and make assertions about how they have been used.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://pypi.python.org/packages/source/%s/%s/' % (name[0],name)] +sources = [SOURCE_TAR_GZ] + +python = "Python" +pythonversion = '2.7.9' +#mock is part of Python 3.3 +pyshortver = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), +] + +pyprefix = 'lib/python%s/site-packages' % pyshortver +eggname = '%%(name)s-%%(version)s-py%s.egg' % pyshortver +sanity_check_paths = { + 'files': [], + 'dirs': [('%s/%%(name)s' % pyprefix, '%s/%s' % (pyprefix, eggname))], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pytz/pytz-2014.10-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/pytz/pytz-2014.10-foss-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..2362eab77c --- /dev/null +++ b/easybuild/easyconfigs/p/pytz/pytz-2014.10-foss-2015a-Python-2.7.9.eb @@ -0,0 +1,31 @@ +easyblock = "PythonPackage" + +name = 'pytz' +version = '2014.10' + +homepage = 'https://pypi.python.org/pypi/pytz' +description = """World timezone definitions, modern and historical.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['http://pypi.python.org/packages/source/%s/%s/' % (name[0],name)] +sources = [SOURCE_TAR_GZ] + +python = "Python" +pythonversion = '2.7.9' +pyshortver = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), +] + +pyprefix = 'lib/python%s/site-packages' % pyshortver +eggname = '%%(name)s-%%(version)s-py%s.egg' % pyshortver +sanity_check_paths = { + 'files': [], + 'dirs': [('%s/%%(name)s' % pyprefix, '%s/%s' % (pyprefix, eggname))], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/p/pytz/pytz-2014.10-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/pytz/pytz-2014.10-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..37fedc7a5b --- /dev/null +++ b/easybuild/easyconfigs/p/pytz/pytz-2014.10-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,31 @@ +easyblock = "PythonPackage" + +name = 'pytz' +version = '2014.10' + +homepage = 'https://pypi.python.org/pypi/pytz' +description = """World timezone definitions, modern and historical.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://pypi.python.org/packages/source/%s/%s/' % (name[0],name)] +sources = [SOURCE_TAR_GZ] + +python = "Python" +pythonversion = '2.7.9' +pyshortver = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), +] + +pyprefix = 'lib/python%s/site-packages' % pyshortver +eggname = '%%(name)s-%%(version)s-py%s.egg' % pyshortver +sanity_check_paths = { + 'files': [], + 'dirs': [('%s/%%(name)s' % pyprefix, '%s/%s' % (pyprefix, eggname))], +} + +moduleclass = 'system' -- GitLab From 954367dbabde8e71950c96308f3fc11009afabbc Mon Sep 17 00:00:00 2001 From: pescobar Date: Thu, 12 Mar 2015 14:15:15 +0100 Subject: [PATCH 0769/1217] bump to boost-1.57.0 --- easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb index 3fd6b2b7dd..54dfbd50cc 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb @@ -29,7 +29,7 @@ source_urls = ['http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s # http://www.ncbi.nlm.nih.gov/viewvc/v1?view=revision&revision=65204 patches = ['blast+_%(version)s.patch'] -dependencies = [('Boost', '1.51.0')] +dependencies = [('Boost', '1.57.0')] configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' -- GitLab From d906ad3459bc3f62f94fb1307083dabde3c23a9f Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 12 Mar 2015 14:26:26 +0100 Subject: [PATCH 0770/1217] Deps moved from another PR (plus some extra) --- .../a/Autoconf/Autoconf-2.69-intel-2015a.eb | 25 ++++++++++++++ .../a/Automake/Automake-1.15-intel-2015a.eb | 33 +++++++++++++++++++ .../makedepend-1.0.5-intel-2015a.eb | 20 +++++++++++ 3 files changed, 78 insertions(+) create mode 100644 easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015a.eb create mode 100644 easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb create mode 100644 easybuild/easyconfigs/m/makedepend/makedepend-1.0.5-intel-2015a.eb diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015a.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015a.eb new file mode 100644 index 0000000000..a3c280daab --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts to automatically + configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like + systems without manual user intervention. Autoconf creates a configuration script for a package from a + template file that lists the operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", + "autoscan", "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb new file mode 100644 index 0000000000..3a528809f4 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015a.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://ftp.gnu.org/gnu/automake'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.5-intel-2015a.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.5-intel-2015a.eb new file mode 100644 index 0000000000..0b36b37c50 --- /dev/null +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.5-intel-2015a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'makedepend' +version = '1.0.5' + +homepage = "http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html" +description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/releases/individual/util'] + +sanity_check_paths = { + 'files': ['bin/makedepend'], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From 3c68831530aa8a1d3045a530f648ad4db09b98f1 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 12 Mar 2015 15:05:24 +0100 Subject: [PATCH 0771/1217] {devel}[goolf/1.4.10] Boost 1.57.0 (REVIEW) --- .../b/Boost/Boost-1.57.0-goolf-1.4.10.eb | 23 +++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.57.0-goolf-1.4.10.eb diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.57.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-goolf-1.4.10.eb new file mode 100644 index 0000000000..d038bec2b5 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-goolf-1.4.10.eb @@ -0,0 +1,23 @@ +name = 'Boost' +version = '1.57.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), +] + +configopts = '--without-libraries=python' + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' -- GitLab From 3890f73cfc0a9de5834792649c7e43352670b2e3 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 12 Mar 2015 16:17:18 +0100 Subject: [PATCH 0772/1217] add easyconfig file for TINKER v7.1.2 with intel/2015a --- .../t/TINKER/TINKER-7.1.2-intel-2015a.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/t/TINKER/TINKER-7.1.2-intel-2015a.eb diff --git a/easybuild/easyconfigs/t/TINKER/TINKER-7.1.2-intel-2015a.eb b/easybuild/easyconfigs/t/TINKER/TINKER-7.1.2-intel-2015a.eb new file mode 100644 index 0000000000..d61fb49b07 --- /dev/null +++ b/easybuild/easyconfigs/t/TINKER/TINKER-7.1.2-intel-2015a.eb @@ -0,0 +1,15 @@ +name = 'TINKER' +version = '7.1.2' + +homepage = 'http://dasher.wustl.edu/tinker' +description = """The TINKER molecular modeling software is a complete and general package for molecular mechanics + and dynamics, with some special features for biopolymers.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://dasher.wustl.edu/tinker/downloads/'] +sources = [SOURCELOWER_TAR_GZ] + +runtest = True + +moduleclass = 'chem' -- GitLab From 4f5a6c0914ed9adea45d845d6d45a28224b60e0d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 12 Mar 2015 17:07:42 +0100 Subject: [PATCH 0773/1217] add FFTW dep to TINKER easyconfig --- .../f/FFTW/FFTW-3.3.4-intel-2015a.eb | 34 +++++++++++++++++++ .../t/TINKER/TINKER-7.1.2-intel-2015a.eb | 2 ++ 2 files changed, 36 insertions(+) create mode 100644 easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2015a.eb diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2015a.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2015a.eb new file mode 100644 index 0000000000..ce8a9b16ca --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-intel-2015a.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +# no quad precision, requires GCC v4.6 or higher +# see also http://www.fftw.org/doc/Extended-and-quadruple-precision-in-Fortran.html +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/t/TINKER/TINKER-7.1.2-intel-2015a.eb b/easybuild/easyconfigs/t/TINKER/TINKER-7.1.2-intel-2015a.eb index d61fb49b07..814e32e34a 100644 --- a/easybuild/easyconfigs/t/TINKER/TINKER-7.1.2-intel-2015a.eb +++ b/easybuild/easyconfigs/t/TINKER/TINKER-7.1.2-intel-2015a.eb @@ -10,6 +10,8 @@ toolchain = {'name': 'intel', 'version': '2015a'} source_urls = ['http://dasher.wustl.edu/tinker/downloads/'] sources = [SOURCELOWER_TAR_GZ] +dependencies = [('FFTW', '3.3.4')] + runtest = True moduleclass = 'chem' -- GitLab From ff730443688b2bfd3574ab0865db440120849c30 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 13 Mar 2015 11:41:26 +0100 Subject: [PATCH 0774/1217] add missing extensions in Python 2.7.8 goolf/1.5.14 easyconfig --- .../p/Python/Python-2.7.8-goolf-1.5.14.eb | 17 +++++++++++++---- 1 file changed, 13 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb index df184b1c3e..9be6d7955c 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb @@ -25,10 +25,9 @@ dependencies = [ # ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev')] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! -# Version updated 08/JULY/2014 exts_list = [ ('setuptools', '5.4.1', { 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], @@ -48,8 +47,11 @@ exts_list = [ ('scipy', scipyversion, { 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), - ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + ('bdist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/bdist/'], + }), + ('six', '1.7.3', { + 'source_urls': ['http://pypi.python.org/packages/source/s/six/'], }), ('mpi4py', '1.3.1', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], @@ -84,12 +86,19 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.14.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), ('pyparsing', '2.0.2', { 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], }), + ('pygments', '1.6', { + 'source_urls': ['https://pypi.python.org/packages/source/P/Pygments/'], + 'source_tmpl': 'Pygments-%(version)s.tar.gz', + }), ] moduleclass = 'lang' -- GitLab From 5627067f6235a9cadfbec358476bce98686383cb Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 13 Mar 2015 11:59:32 +0100 Subject: [PATCH 0775/1217] fix typo: bdist -> blist --- easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb index 9be6d7955c..2dd2282def 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb @@ -47,8 +47,8 @@ exts_list = [ ('scipy', scipyversion, { 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), - ('bdist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/bdist/'], + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], }), ('six', '1.7.3', { 'source_urls': ['http://pypi.python.org/packages/source/s/six/'], -- GitLab From 2cb09b0dc209e8861da69e9d19dd244adc549a98 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Fri, 13 Mar 2015 12:03:33 +0100 Subject: [PATCH 0776/1217] added sqlite as dependency for python 2.7.9 --- .../easyconfigs/p/.ropeproject/config.py | 85 +++++++++++++++++++ .../easyconfigs/p/.ropeproject/globalnames | 1 + easybuild/easyconfigs/p/.ropeproject/history | 1 + easybuild/easyconfigs/p/.ropeproject/objectdb | 1 + .../p/Python/.ropeproject/config.py | 85 +++++++++++++++++++ .../p/Python/.ropeproject/globalnames | 1 + .../easyconfigs/p/Python/.ropeproject/history | 1 + .../p/Python/.ropeproject/objectdb | 1 + .../p/Python/Python-2.7.9-GCC-4.9.2-bare.eb | 1 + .../p/Python/Python-2.7.9-foss-2015a-bare.eb | 2 + .../p/Python/Python-2.7.9-foss-2015a.eb | 2 + .../Python/Python-2.7.9-gompi-1.5.16-bare.eb | 4 +- .../p/Python/Python-2.7.9-goolf-1.5.14.eb | 1 + .../p/Python/Python-2.7.9-intel-2015a-bare.eb | 2 + .../p/Python/Python-2.7.9-intel-2015a.eb | 2 + .../s/SQLite/SQLite-3.8.8.1-foss-2015a.eb | 38 +++++++++ 16 files changed, 227 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/p/.ropeproject/config.py create mode 100644 easybuild/easyconfigs/p/.ropeproject/globalnames create mode 100644 easybuild/easyconfigs/p/.ropeproject/history create mode 100644 easybuild/easyconfigs/p/.ropeproject/objectdb create mode 100644 easybuild/easyconfigs/p/Python/.ropeproject/config.py create mode 100644 easybuild/easyconfigs/p/Python/.ropeproject/globalnames create mode 100644 easybuild/easyconfigs/p/Python/.ropeproject/history create mode 100644 easybuild/easyconfigs/p/Python/.ropeproject/objectdb create mode 100644 easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015a.eb diff --git a/easybuild/easyconfigs/p/.ropeproject/config.py b/easybuild/easyconfigs/p/.ropeproject/config.py new file mode 100644 index 0000000000..ffebcd4fc3 --- /dev/null +++ b/easybuild/easyconfigs/p/.ropeproject/config.py @@ -0,0 +1,85 @@ +# The default ``config.py`` + + +def set_prefs(prefs): + """This function is called before opening the project""" + + # Specify which files and folders to ignore in the project. + # Changes to ignored resources are not added to the history and + # VCSs. Also they are not returned in `Project.get_files()`. + # Note that ``?`` and ``*`` match all characters but slashes. + # '*.pyc': matches 'test.pyc' and 'pkg/test.pyc' + # 'mod*.pyc': matches 'test/mod1.pyc' but not 'mod/1.pyc' + # '.svn': matches 'pkg/.svn' and all of its children + # 'build/*.o': matches 'build/lib.o' but not 'build/sub/lib.o' + # 'build//*.o': matches 'build/lib.o' and 'build/sub/lib.o' + prefs['ignored_resources'] = ['*.pyc', '*~', '.ropeproject', + '.hg', '.svn', '_svn', '.git'] + + # Specifies which files should be considered python files. It is + # useful when you have scripts inside your project. Only files + # ending with ``.py`` are considered to be python files by + # default. + #prefs['python_files'] = ['*.py'] + + # Custom source folders: By default rope searches the project + # for finding source folders (folders that should be searched + # for finding modules). You can add paths to that list. Note + # that rope guesses project source folders correctly most of the + # time; use this if you have any problems. + # The folders should be relative to project root and use '/' for + # separating folders regardless of the platform rope is running on. + # 'src/my_source_folder' for instance. + #prefs.add('source_folders', 'src') + + # You can extend python path for looking up modules + #prefs.add('python_path', '~/python/') + + # Should rope save object information or not. + prefs['save_objectdb'] = True + prefs['compress_objectdb'] = False + + # If `True`, rope analyzes each module when it is being saved. + prefs['automatic_soa'] = True + # The depth of calls to follow in static object analysis + prefs['soa_followed_calls'] = 0 + + # If `False` when running modules or unit tests "dynamic object + # analysis" is turned off. This makes them much faster. + prefs['perform_doa'] = True + + # Rope can check the validity of its object DB when running. + prefs['validate_objectdb'] = True + + # How many undos to hold? + prefs['max_history_items'] = 32 + + # Shows whether to save history across sessions. + prefs['save_history'] = True + prefs['compress_history'] = False + + # Set the number spaces used for indenting. According to + # :PEP:`8`, it is best to use 4 spaces. Since most of rope's + # unit-tests use 4 spaces it is more reliable, too. + prefs['indent_size'] = 4 + + # Builtin and c-extension modules that are allowed to be imported + # and inspected by rope. + prefs['extension_modules'] = [] + + # Add all standard c-extensions to extension_modules list. + prefs['import_dynload_stdmods'] = True + + # If `True` modules with syntax errors are considered to be empty. + # The default value is `False`; When `False` syntax errors raise + # `rope.base.exceptions.ModuleSyntaxError` exception. + prefs['ignore_syntax_errors'] = False + + # If `True`, rope ignores unresolvable imports. Otherwise, they + # appear in the importing namespace. + prefs['ignore_bad_imports'] = False + + +def project_opened(project): + """This function is called after opening the project""" + # Do whatever you like here! diff --git a/easybuild/easyconfigs/p/.ropeproject/globalnames b/easybuild/easyconfigs/p/.ropeproject/globalnames new file mode 100644 index 0000000000..29c40cda94 --- /dev/null +++ b/easybuild/easyconfigs/p/.ropeproject/globalnames @@ -0,0 +1 @@ +€}q. \ No newline at end of file diff --git a/easybuild/easyconfigs/p/.ropeproject/history b/easybuild/easyconfigs/p/.ropeproject/history new file mode 100644 index 0000000000..fcd9c963ca --- /dev/null +++ b/easybuild/easyconfigs/p/.ropeproject/history @@ -0,0 +1 @@ +€]q(]q]qe. \ No newline at end of file diff --git a/easybuild/easyconfigs/p/.ropeproject/objectdb b/easybuild/easyconfigs/p/.ropeproject/objectdb new file mode 100644 index 0000000000..29c40cda94 --- /dev/null +++ b/easybuild/easyconfigs/p/.ropeproject/objectdb @@ -0,0 +1 @@ +€}q. \ No newline at end of file diff --git a/easybuild/easyconfigs/p/Python/.ropeproject/config.py b/easybuild/easyconfigs/p/Python/.ropeproject/config.py new file mode 100644 index 0000000000..ffebcd4fc3 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/.ropeproject/config.py @@ -0,0 +1,85 @@ +# The default ``config.py`` + + +def set_prefs(prefs): + """This function is called before opening the project""" + + # Specify which files and folders to ignore in the project. + # Changes to ignored resources are not added to the history and + # VCSs. Also they are not returned in `Project.get_files()`. + # Note that ``?`` and ``*`` match all characters but slashes. + # '*.pyc': matches 'test.pyc' and 'pkg/test.pyc' + # 'mod*.pyc': matches 'test/mod1.pyc' but not 'mod/1.pyc' + # '.svn': matches 'pkg/.svn' and all of its children + # 'build/*.o': matches 'build/lib.o' but not 'build/sub/lib.o' + # 'build//*.o': matches 'build/lib.o' and 'build/sub/lib.o' + prefs['ignored_resources'] = ['*.pyc', '*~', '.ropeproject', + '.hg', '.svn', '_svn', '.git'] + + # Specifies which files should be considered python files. It is + # useful when you have scripts inside your project. Only files + # ending with ``.py`` are considered to be python files by + # default. + #prefs['python_files'] = ['*.py'] + + # Custom source folders: By default rope searches the project + # for finding source folders (folders that should be searched + # for finding modules). You can add paths to that list. Note + # that rope guesses project source folders correctly most of the + # time; use this if you have any problems. + # The folders should be relative to project root and use '/' for + # separating folders regardless of the platform rope is running on. + # 'src/my_source_folder' for instance. + #prefs.add('source_folders', 'src') + + # You can extend python path for looking up modules + #prefs.add('python_path', '~/python/') + + # Should rope save object information or not. + prefs['save_objectdb'] = True + prefs['compress_objectdb'] = False + + # If `True`, rope analyzes each module when it is being saved. + prefs['automatic_soa'] = True + # The depth of calls to follow in static object analysis + prefs['soa_followed_calls'] = 0 + + # If `False` when running modules or unit tests "dynamic object + # analysis" is turned off. This makes them much faster. + prefs['perform_doa'] = True + + # Rope can check the validity of its object DB when running. + prefs['validate_objectdb'] = True + + # How many undos to hold? + prefs['max_history_items'] = 32 + + # Shows whether to save history across sessions. + prefs['save_history'] = True + prefs['compress_history'] = False + + # Set the number spaces used for indenting. According to + # :PEP:`8`, it is best to use 4 spaces. Since most of rope's + # unit-tests use 4 spaces it is more reliable, too. + prefs['indent_size'] = 4 + + # Builtin and c-extension modules that are allowed to be imported + # and inspected by rope. + prefs['extension_modules'] = [] + + # Add all standard c-extensions to extension_modules list. + prefs['import_dynload_stdmods'] = True + + # If `True` modules with syntax errors are considered to be empty. + # The default value is `False`; When `False` syntax errors raise + # `rope.base.exceptions.ModuleSyntaxError` exception. + prefs['ignore_syntax_errors'] = False + + # If `True`, rope ignores unresolvable imports. Otherwise, they + # appear in the importing namespace. + prefs['ignore_bad_imports'] = False + + +def project_opened(project): + """This function is called after opening the project""" + # Do whatever you like here! diff --git a/easybuild/easyconfigs/p/Python/.ropeproject/globalnames b/easybuild/easyconfigs/p/Python/.ropeproject/globalnames new file mode 100644 index 0000000000..29c40cda94 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/.ropeproject/globalnames @@ -0,0 +1 @@ +€}q. \ No newline at end of file diff --git a/easybuild/easyconfigs/p/Python/.ropeproject/history b/easybuild/easyconfigs/p/Python/.ropeproject/history new file mode 100644 index 0000000000..fcd9c963ca --- /dev/null +++ b/easybuild/easyconfigs/p/Python/.ropeproject/history @@ -0,0 +1 @@ +€]q(]q]qe. \ No newline at end of file diff --git a/easybuild/easyconfigs/p/Python/.ropeproject/objectdb b/easybuild/easyconfigs/p/Python/.ropeproject/objectdb new file mode 100644 index 0000000000..29c40cda94 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/.ropeproject/objectdb @@ -0,0 +1 @@ +€}q. \ No newline at end of file diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-GCC-4.9.2-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-GCC-4.9.2-bare.eb index 169427938d..3974b6e842 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-GCC-4.9.2-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-GCC-4.9.2-bare.eb @@ -17,6 +17,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), + ('SQLite', '3.8.8.1'), # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's # nice to have an up to date openssl for security reasons ] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb index 030f78c75d..669c54c38d 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb @@ -18,6 +18,8 @@ dependencies = [ ('libreadline', '6.3'), ('ncurses', '5.9'), ('SQLite', '3.8.8.1'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb index 921ed3e70b..d8da5a3446 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb @@ -20,6 +20,8 @@ dependencies = [ ('libreadline', '6.3'), ('ncurses', '5.9'), ('SQLite', '3.8.8.1'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb index 2d2b758eb9..e206b78e22 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb @@ -16,7 +16,9 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + ('SQLite', '3.8.8.1'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb index 51b20dc349..177fc2a8fc 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb @@ -19,6 +19,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), + ('SQLite', '3.8.8.1'), # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's # nice to have an up to date openssl for security reasons ] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb index 2ff0414bd6..d2c02867a9 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb @@ -18,6 +18,8 @@ dependencies = [ ('libreadline', '6.3'), ('ncurses', '5.9'), ('SQLite', '3.8.8.1'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb index 45b0a6d5db..540281c3ab 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb @@ -20,6 +20,8 @@ dependencies = [ ('libreadline', '6.3'), ('ncurses', '5.9'), ('SQLite', '3.8.8.1'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015a.eb new file mode 100644 index 0000000000..a8d05d1f18 --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015a.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.8.8.1' + +homepage = 'http://www.sqlite.org/' +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'foss', 'version': '2015a'} + +# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz +source_urls = ['http://www.sqlite.org/2015/'] +version_str = '%(version_major)s' + ''.join('%02d' % int(x) for x in version.split('.')[1:]) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] + +dependencies = [ + ('libreadline', '6.3'), + ('Tcl', '8.6.3'), +] + +sanity_check_paths = { + 'files': ['bin/sqlite3'], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From 99d31ad04400ad217a0833d4fbe9a29fc0ca83d1 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Fri, 13 Mar 2015 12:05:28 +0100 Subject: [PATCH 0777/1217] removed unwanted ropeproject folder --- .gitignore | 1 + .../easyconfigs/p/.ropeproject/config.py | 85 ------------------- .../easyconfigs/p/.ropeproject/globalnames | 1 - easybuild/easyconfigs/p/.ropeproject/history | 1 - easybuild/easyconfigs/p/.ropeproject/objectdb | 1 - .../p/Python/.ropeproject/config.py | 85 ------------------- .../p/Python/.ropeproject/globalnames | 1 - .../easyconfigs/p/Python/.ropeproject/history | 1 - .../p/Python/.ropeproject/objectdb | 1 - 9 files changed, 1 insertion(+), 176 deletions(-) delete mode 100644 easybuild/easyconfigs/p/.ropeproject/config.py delete mode 100644 easybuild/easyconfigs/p/.ropeproject/globalnames delete mode 100644 easybuild/easyconfigs/p/.ropeproject/history delete mode 100644 easybuild/easyconfigs/p/.ropeproject/objectdb delete mode 100644 easybuild/easyconfigs/p/Python/.ropeproject/config.py delete mode 100644 easybuild/easyconfigs/p/Python/.ropeproject/globalnames delete mode 100644 easybuild/easyconfigs/p/Python/.ropeproject/history delete mode 100644 easybuild/easyconfigs/p/Python/.ropeproject/objectdb diff --git a/.gitignore b/.gitignore index c6bb2c7fdd..8179a745b4 100644 --- a/.gitignore +++ b/.gitignore @@ -7,3 +7,4 @@ build/ dist/ *egg-info/ *.swp +*.ropeproject/ diff --git a/easybuild/easyconfigs/p/.ropeproject/config.py b/easybuild/easyconfigs/p/.ropeproject/config.py deleted file mode 100644 index ffebcd4fc3..0000000000 --- a/easybuild/easyconfigs/p/.ropeproject/config.py +++ /dev/null @@ -1,85 +0,0 @@ -# The default ``config.py`` - - -def set_prefs(prefs): - """This function is called before opening the project""" - - # Specify which files and folders to ignore in the project. - # Changes to ignored resources are not added to the history and - # VCSs. Also they are not returned in `Project.get_files()`. - # Note that ``?`` and ``*`` match all characters but slashes. - # '*.pyc': matches 'test.pyc' and 'pkg/test.pyc' - # 'mod*.pyc': matches 'test/mod1.pyc' but not 'mod/1.pyc' - # '.svn': matches 'pkg/.svn' and all of its children - # 'build/*.o': matches 'build/lib.o' but not 'build/sub/lib.o' - # 'build//*.o': matches 'build/lib.o' and 'build/sub/lib.o' - prefs['ignored_resources'] = ['*.pyc', '*~', '.ropeproject', - '.hg', '.svn', '_svn', '.git'] - - # Specifies which files should be considered python files. It is - # useful when you have scripts inside your project. Only files - # ending with ``.py`` are considered to be python files by - # default. - #prefs['python_files'] = ['*.py'] - - # Custom source folders: By default rope searches the project - # for finding source folders (folders that should be searched - # for finding modules). You can add paths to that list. Note - # that rope guesses project source folders correctly most of the - # time; use this if you have any problems. - # The folders should be relative to project root and use '/' for - # separating folders regardless of the platform rope is running on. - # 'src/my_source_folder' for instance. - #prefs.add('source_folders', 'src') - - # You can extend python path for looking up modules - #prefs.add('python_path', '~/python/') - - # Should rope save object information or not. - prefs['save_objectdb'] = True - prefs['compress_objectdb'] = False - - # If `True`, rope analyzes each module when it is being saved. - prefs['automatic_soa'] = True - # The depth of calls to follow in static object analysis - prefs['soa_followed_calls'] = 0 - - # If `False` when running modules or unit tests "dynamic object - # analysis" is turned off. This makes them much faster. - prefs['perform_doa'] = True - - # Rope can check the validity of its object DB when running. - prefs['validate_objectdb'] = True - - # How many undos to hold? - prefs['max_history_items'] = 32 - - # Shows whether to save history across sessions. - prefs['save_history'] = True - prefs['compress_history'] = False - - # Set the number spaces used for indenting. According to - # :PEP:`8`, it is best to use 4 spaces. Since most of rope's - # unit-tests use 4 spaces it is more reliable, too. - prefs['indent_size'] = 4 - - # Builtin and c-extension modules that are allowed to be imported - # and inspected by rope. - prefs['extension_modules'] = [] - - # Add all standard c-extensions to extension_modules list. - prefs['import_dynload_stdmods'] = True - - # If `True` modules with syntax errors are considered to be empty. - # The default value is `False`; When `False` syntax errors raise - # `rope.base.exceptions.ModuleSyntaxError` exception. - prefs['ignore_syntax_errors'] = False - - # If `True`, rope ignores unresolvable imports. Otherwise, they - # appear in the importing namespace. - prefs['ignore_bad_imports'] = False - - -def project_opened(project): - """This function is called after opening the project""" - # Do whatever you like here! diff --git a/easybuild/easyconfigs/p/.ropeproject/globalnames b/easybuild/easyconfigs/p/.ropeproject/globalnames deleted file mode 100644 index 29c40cda94..0000000000 --- a/easybuild/easyconfigs/p/.ropeproject/globalnames +++ /dev/null @@ -1 +0,0 @@ -€}q. \ No newline at end of file diff --git a/easybuild/easyconfigs/p/.ropeproject/history b/easybuild/easyconfigs/p/.ropeproject/history deleted file mode 100644 index fcd9c963ca..0000000000 --- a/easybuild/easyconfigs/p/.ropeproject/history +++ /dev/null @@ -1 +0,0 @@ -€]q(]q]qe. \ No newline at end of file diff --git a/easybuild/easyconfigs/p/.ropeproject/objectdb b/easybuild/easyconfigs/p/.ropeproject/objectdb deleted file mode 100644 index 29c40cda94..0000000000 --- a/easybuild/easyconfigs/p/.ropeproject/objectdb +++ /dev/null @@ -1 +0,0 @@ -€}q. \ No newline at end of file diff --git a/easybuild/easyconfigs/p/Python/.ropeproject/config.py b/easybuild/easyconfigs/p/Python/.ropeproject/config.py deleted file mode 100644 index ffebcd4fc3..0000000000 --- a/easybuild/easyconfigs/p/Python/.ropeproject/config.py +++ /dev/null @@ -1,85 +0,0 @@ -# The default ``config.py`` - - -def set_prefs(prefs): - """This function is called before opening the project""" - - # Specify which files and folders to ignore in the project. - # Changes to ignored resources are not added to the history and - # VCSs. Also they are not returned in `Project.get_files()`. - # Note that ``?`` and ``*`` match all characters but slashes. - # '*.pyc': matches 'test.pyc' and 'pkg/test.pyc' - # 'mod*.pyc': matches 'test/mod1.pyc' but not 'mod/1.pyc' - # '.svn': matches 'pkg/.svn' and all of its children - # 'build/*.o': matches 'build/lib.o' but not 'build/sub/lib.o' - # 'build//*.o': matches 'build/lib.o' and 'build/sub/lib.o' - prefs['ignored_resources'] = ['*.pyc', '*~', '.ropeproject', - '.hg', '.svn', '_svn', '.git'] - - # Specifies which files should be considered python files. It is - # useful when you have scripts inside your project. Only files - # ending with ``.py`` are considered to be python files by - # default. - #prefs['python_files'] = ['*.py'] - - # Custom source folders: By default rope searches the project - # for finding source folders (folders that should be searched - # for finding modules). You can add paths to that list. Note - # that rope guesses project source folders correctly most of the - # time; use this if you have any problems. - # The folders should be relative to project root and use '/' for - # separating folders regardless of the platform rope is running on. - # 'src/my_source_folder' for instance. - #prefs.add('source_folders', 'src') - - # You can extend python path for looking up modules - #prefs.add('python_path', '~/python/') - - # Should rope save object information or not. - prefs['save_objectdb'] = True - prefs['compress_objectdb'] = False - - # If `True`, rope analyzes each module when it is being saved. - prefs['automatic_soa'] = True - # The depth of calls to follow in static object analysis - prefs['soa_followed_calls'] = 0 - - # If `False` when running modules or unit tests "dynamic object - # analysis" is turned off. This makes them much faster. - prefs['perform_doa'] = True - - # Rope can check the validity of its object DB when running. - prefs['validate_objectdb'] = True - - # How many undos to hold? - prefs['max_history_items'] = 32 - - # Shows whether to save history across sessions. - prefs['save_history'] = True - prefs['compress_history'] = False - - # Set the number spaces used for indenting. According to - # :PEP:`8`, it is best to use 4 spaces. Since most of rope's - # unit-tests use 4 spaces it is more reliable, too. - prefs['indent_size'] = 4 - - # Builtin and c-extension modules that are allowed to be imported - # and inspected by rope. - prefs['extension_modules'] = [] - - # Add all standard c-extensions to extension_modules list. - prefs['import_dynload_stdmods'] = True - - # If `True` modules with syntax errors are considered to be empty. - # The default value is `False`; When `False` syntax errors raise - # `rope.base.exceptions.ModuleSyntaxError` exception. - prefs['ignore_syntax_errors'] = False - - # If `True`, rope ignores unresolvable imports. Otherwise, they - # appear in the importing namespace. - prefs['ignore_bad_imports'] = False - - -def project_opened(project): - """This function is called after opening the project""" - # Do whatever you like here! diff --git a/easybuild/easyconfigs/p/Python/.ropeproject/globalnames b/easybuild/easyconfigs/p/Python/.ropeproject/globalnames deleted file mode 100644 index 29c40cda94..0000000000 --- a/easybuild/easyconfigs/p/Python/.ropeproject/globalnames +++ /dev/null @@ -1 +0,0 @@ -€}q. \ No newline at end of file diff --git a/easybuild/easyconfigs/p/Python/.ropeproject/history b/easybuild/easyconfigs/p/Python/.ropeproject/history deleted file mode 100644 index fcd9c963ca..0000000000 --- a/easybuild/easyconfigs/p/Python/.ropeproject/history +++ /dev/null @@ -1 +0,0 @@ -€]q(]q]qe. \ No newline at end of file diff --git a/easybuild/easyconfigs/p/Python/.ropeproject/objectdb b/easybuild/easyconfigs/p/Python/.ropeproject/objectdb deleted file mode 100644 index 29c40cda94..0000000000 --- a/easybuild/easyconfigs/p/Python/.ropeproject/objectdb +++ /dev/null @@ -1 +0,0 @@ -€}q. \ No newline at end of file -- GitLab From 71de145001f3acb4fe14b717322a57fceaf12472 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Fri, 13 Mar 2015 12:18:41 +0100 Subject: [PATCH 0778/1217] added more dependencies --- .../s/SQLite/SQLite-3.8.8.1-GCC-4.9.2.eb | 38 +++++++++++++++++++ .../s/SQLite/SQLite-3.8.8.1-gompi-1.5.16.eb | 38 +++++++++++++++++++ .../s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb | 38 +++++++++++++++++++ .../easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015a.eb | 21 ++++++++++ 4 files changed, 135 insertions(+) create mode 100644 easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-gompi-1.5.16.eb create mode 100644 easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015a.eb diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.9.2.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.9.2.eb new file mode 100644 index 0000000000..ed00f7b981 --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-GCC-4.9.2.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.8.8.1' + +homepage = 'http://www.sqlite.org/' +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz +source_urls = ['http://www.sqlite.org/2015/'] +version_str = '%(version_major)s' + ''.join('%02d' % int(x) for x in version.split('.')[1:]) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] + +dependencies = [ + ('libreadline', '6.3'), + ('Tcl', '8.6.3'), +] + +sanity_check_paths = { + 'files': ['bin/sqlite3'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-gompi-1.5.16.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-gompi-1.5.16.eb new file mode 100644 index 0000000000..d4af19e4fa --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-gompi-1.5.16.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.8.8.1' + +homepage = 'http://www.sqlite.org/' +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'gompi', 'version': '1.5.16'} + +# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz +source_urls = ['http://www.sqlite.org/2015/'] +version_str = '%(version_major)s' + ''.join('%02d' % int(x) for x in version.split('.')[1:]) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] + +dependencies = [ + ('libreadline', '6.3'), + ('Tcl', '8.6.3'), +] + +sanity_check_paths = { + 'files': ['bin/sqlite3'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb new file mode 100644 index 0000000000..474be8f629 --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.8.8.1' + +homepage = 'http://www.sqlite.org/' +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'goolf', 'version': '1.4.14'} + +# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz +source_urls = ['http://www.sqlite.org/2015/'] +version_str = '%(version_major)s' + ''.join('%02d' % int(x) for x in version.split('.')[1:]) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] + +dependencies = [ + ('libreadline', '6.3'), + ('Tcl', '8.6.3'), +] + +sanity_check_paths = { + 'files': ['bin/sqlite3'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015a.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015a.eb new file mode 100644 index 0000000000..391e0178fc --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015a.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.3' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' -- GitLab From f7980545904f87c7b070493f30f766afebfaf072 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Fri, 13 Mar 2015 12:20:36 +0100 Subject: [PATCH 0779/1217] fixed typo --- easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb index 474be8f629..763de183e3 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-goolf-1.5.14.eb @@ -18,7 +18,7 @@ version = '3.8.8.1' homepage = 'http://www.sqlite.org/' description = 'SQLite: SQL Database Engine in a C Library' -toolchain = {'name': 'goolf', 'version': '1.4.14'} +toolchain = {'name': 'goolf', 'version': '1.5.14'} # eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz source_urls = ['http://www.sqlite.org/2015/'] -- GitLab From 04c57306644255f4b57ef8ea23b37f7e7ed68541 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Fri, 13 Mar 2015 12:24:12 +0100 Subject: [PATCH 0780/1217] added more dependencies (tcl) --- .../easyconfigs/t/Tcl/Tcl-8.6.3-GCC-4.9.2.eb | 21 +++++++++++++++++++ .../t/Tcl/Tcl-8.6.3-gompi-1.5.16.eb | 21 +++++++++++++++++++ .../t/Tcl/Tcl-8.6.3-goolf-1.5.14.eb | 21 +++++++++++++++++++ 3 files changed, 63 insertions(+) create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-gompi-1.5.16.eb create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-goolf-1.5.14.eb diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-GCC-4.9.2.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-GCC-4.9.2.eb new file mode 100644 index 0000000000..7affc5dcb2 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-GCC-4.9.2.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.3' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-gompi-1.5.16.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-gompi-1.5.16.eb new file mode 100644 index 0000000000..b13013fafe --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-gompi-1.5.16.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.3' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'gompi', 'version': '1.5.16'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-goolf-1.5.14.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-goolf-1.5.14.eb new file mode 100644 index 0000000000..dbe7dcaaa1 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-goolf-1.5.14.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.3' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'goolf', 'version': '1.5.14'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' -- GitLab From 3ff2f80f08dfc1c85b2e1973888610b058dac136 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Fri, 13 Mar 2015 12:26:13 +0100 Subject: [PATCH 0781/1217] Create CP2K-2.6.0-intel-para-2014.11.eb To be used in conjunction with a proposed easyblock that supports MPICH mpi families. ```runtest = "False"``` is required because our system does not support mpirun (but can be omitted for most others) --- .../c/CP2K/CP2K-2.6.0-intel-para-2014.11.eb | 40 +++++++++++++++++++ 1 file changed, 40 insertions(+) create mode 100644 easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.11.eb diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.11.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.11.eb new file mode 100644 index 0000000000..0d6858f5a7 --- /dev/null +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.11.eb @@ -0,0 +1,40 @@ +name = 'CP2K' +version = '2.6.0' + +homepage = 'http://www.cp2k.org/' +description = """CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular + simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different + methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and + classical pair and many-body potentials. """ + +toolchain = {'name': 'intel-para', 'version': '2014.11'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [SOURCEFORGE_SOURCE] + +patches = [ + 'CP2K-2.6.0-ifort-compiler-bug-fix.patch', + 'CP2K-2.4.0-fix_compile_date_lastsvn.patch', +] + +dependencies = [ + ('Libint', '1.1.4'), + ('libxc', '2.2.1'), +] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.2'), +] + +# don't use parallel make, results in compilation failure +# because Fortran module files aren't created before they are needed +parallel = 1 + +# regression test reports failures +ignore_regtest_fails = True + +moduleclass = 'chem' + +runtest = "False" -- GitLab From 53f64284ab26a809d2f6732118dca11b0c01a2f7 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Fri, 13 Mar 2015 12:40:38 +0100 Subject: [PATCH 0782/1217] Use toolchain in repo --- ...0-intel-para-2014.11.eb => CP2K-2.6.0-intel-para-2014.12.eb} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/c/CP2K/{CP2K-2.6.0-intel-para-2014.11.eb => CP2K-2.6.0-intel-para-2014.12.eb} (94%) diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.11.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.12.eb similarity index 94% rename from easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.11.eb rename to easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.12.eb index 0d6858f5a7..078ff065ca 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.11.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.12.eb @@ -7,7 +7,7 @@ description = """CP2K is a freely available (GPL) program, written in Fortran 95 methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials. """ -toolchain = {'name': 'intel-para', 'version': '2014.11'} +toolchain = {'name': 'intel-para', 'version': '2014.12'} toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_BZ2] -- GitLab From 83b1a2669a4fd0af2957fa8aeca6dc20ff81920d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 13 Mar 2015 12:44:21 +0100 Subject: [PATCH 0783/1217] include setting of LD_PRELOAD in Haord/jemalloc easyconfigs --- easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb | 2 ++ .../easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb | 4 +++- 2 files changed, 5 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb b/easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb index 38e2d6db59..229cf3a9ba 100644 --- a/easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb +++ b/easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb @@ -24,4 +24,6 @@ sanity_check_paths = { 'dirs': [], } +modextrapaths = {'LD_PRELOAD': ['lib/libhoard.so']} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb b/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb index ac8c2523c3..f80ef5fcba 100644 --- a/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb +++ b/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb @@ -14,8 +14,10 @@ sources = [SOURCE_TAR_BZ2] sanity_check_paths = { 'files': ['bin/pprof', 'lib/libjemalloc.a', 'lib/libjemalloc_pic.a', 'lib/libjemalloc.so', - 'include/jemalloc/jemalloc.h'], + 'lib/libjemalloc.so.1', 'include/jemalloc/jemalloc.h'], 'dirs': ['share'], } +modextrapaths = {'LD_PRELOAD': ['lib/libjemalloc.so.1']} + moduleclass = 'lib' -- GitLab From 90af247f97a8cc88a5be6332aaeff0d570a3dc68 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Fri, 13 Mar 2015 12:47:34 +0100 Subject: [PATCH 0784/1217] Create Libint-1.1.4-intel-para-2014.12.eb --- .../Libint/Libint-1.1.4-intel-para-2014.12.eb | 22 +++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-para-2014.12.eb diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-para-2014.12.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-para-2014.12.eb new file mode 100644 index 0000000000..4cc465b70d --- /dev/null +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-para-2014.12.eb @@ -0,0 +1,22 @@ +name = 'Libint' +version = '1.1.4' + +homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' +description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body + matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" +toolchain = {'name': 'intel-para', 'version': '2014.12'} +toolchainopts = {'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') + +configopts = "--with-pic --enable-shared --enable-deriv --enable-r12" + +sanity_check_paths = { + 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + + ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + + ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], + 'dirs':[], +} + +moduleclass = 'chem' -- GitLab From 967ca07203b993ccb22cad9006e19a98a84bf78e Mon Sep 17 00:00:00 2001 From: ocaisa Date: Fri, 13 Mar 2015 12:53:42 +0100 Subject: [PATCH 0785/1217] Create libxc-2.2.1-intel-para-2014.12.eb Added command to build fortran support (required for ABINIT) --- .../l/libxc/libxc-2.2.1-intel-para-2014.12.eb | 32 +++++++++++++++++++ 1 file changed, 32 insertions(+) create mode 100644 easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-para-2014.12.eb diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-para-2014.12.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-para-2014.12.eb new file mode 100644 index 0000000000..4588f32bf0 --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-para-2014.12.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = "2.2.1" + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +toolchain = {'name': 'intel-para', 'version': '2014.12'} +toolchainopts = {'opt': True} + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' + +# From the libxc mailing list +# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect +# a fully working testsuite soon (unless someone wants to volunteer to do +# it, of course ) In the meantime, unless the majority of the tests +# fail, your build should be fine. +#runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc.a', 'lib/libxc.so', 'lib/lixcf90.a', 'lib/lixcf90.so'], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' -- GitLab From f54da75aca28b8c7b6bea6e87e15bb42b45e2bc3 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Fri, 13 Mar 2015 12:54:45 +0100 Subject: [PATCH 0786/1217] Update libxc-2.0.2-ictce-5.3.0.eb Added support for fortran, required by ABINIT --- easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb index d4a9249a7f..b055ba4333 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb @@ -13,7 +13,7 @@ source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True} -configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' +configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' # From the libxc mailing list # To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -- GitLab From ed1227280f9c7864f35d83424dab6346ccd9df33 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Fri, 13 Mar 2015 12:58:48 +0100 Subject: [PATCH 0787/1217] Create flex-2.5.39-intel-para-2014.12.eb --- .../f/flex/flex-2.5.39-intel-para-2014.12.eb | 13 +++++++++++++ 1 file changed, 13 insertions(+) create mode 100644 easybuild/easyconfigs/f/flex/flex-2.5.39-intel-para-2014.12.eb diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-para-2014.12.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-para-2014.12.eb new file mode 100644 index 0000000000..302f7d657a --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-para-2014.12.eb @@ -0,0 +1,13 @@ +name = 'flex' +version = '2.5.39' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" +toolchain = {'name': 'intel-para', 'version': '2014.12'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' -- GitLab From fe2aa32b0a030b4243fb01d1fa8d5afe91393b09 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Fri, 13 Mar 2015 13:01:36 +0100 Subject: [PATCH 0788/1217] Create Bison-3.0.2-intel-2014.12.eb --- .../b/Bison/Bison-3.0.2-intel-2014.12.eb | 21 +++++++++++++++++++ 1 file changed, 21 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2014.12.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2014.12.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2014.12.eb new file mode 100644 index 0000000000..3375224689 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2014.12.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.2' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" +toolchain = {'name': 'intel', 'version': '2014.12'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' -- GitLab From 1e980b0b758972cd6501dddd1f72f4bfdfbcb405 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Fri, 13 Mar 2015 13:05:33 +0100 Subject: [PATCH 0789/1217] Create M4-1.4.17-intel-para-2014.12.eb --- .../m/M4/M4-1.4.17-intel-para-2014.12.eb | 22 +++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.17-intel-para-2014.12.eb diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-para-2014.12.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-para-2014.12.eb new file mode 100644 index 0000000000..ef9457f93b --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-para-2014.12.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" +toolchain = {'name': 'intel-para', 'version': '2014.12'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From 8b34e00d7fe06dd0908965d7dad4040b4276b279 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 13 Mar 2015 13:18:26 +0100 Subject: [PATCH 0790/1217] add easyconfig for FLUENT 16.0 --- easybuild/easyconfigs/f/FLUENT/FLUENT-16.0.eb | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 easybuild/easyconfigs/f/FLUENT/FLUENT-16.0.eb diff --git a/easybuild/easyconfigs/f/FLUENT/FLUENT-16.0.eb b/easybuild/easyconfigs/f/FLUENT/FLUENT-16.0.eb new file mode 100644 index 0000000000..d8a60604df --- /dev/null +++ b/easybuild/easyconfigs/f/FLUENT/FLUENT-16.0.eb @@ -0,0 +1,14 @@ +name = 'FLUENT' +version = '16.0' + +homepage = 'http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/ANSYS+FLUENT' +description = """ANSYS FLUENT software contains the broad physical modeling capabilities needed +to model flow, turbulence, heat transfer, and reactions for industrial applications ranging from +air flow over an aircraft wing to combustion in a furnace, from bubble columns to oil platforms, +from blood flow to semiconductor manufacturing, and from clean room design to wastewater treatment plants.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['FLUIDS_160_LINX64.tar'] + +moduleclass = 'cae' -- GitLab From fb2780506ff4fc83a086332e470b50f3c0440814 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 13 Mar 2015 13:20:24 +0100 Subject: [PATCH 0791/1217] fix FLUENT homepage --- easybuild/easyconfigs/f/FLUENT/FLUENT-14.5.eb | 2 +- easybuild/easyconfigs/f/FLUENT/FLUENT-15.0.7.eb | 2 +- easybuild/easyconfigs/f/FLUENT/FLUENT-16.0.eb | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/f/FLUENT/FLUENT-14.5.eb b/easybuild/easyconfigs/f/FLUENT/FLUENT-14.5.eb index a883c12df3..a981a478ad 100644 --- a/easybuild/easyconfigs/f/FLUENT/FLUENT-14.5.eb +++ b/easybuild/easyconfigs/f/FLUENT/FLUENT-14.5.eb @@ -1,7 +1,7 @@ name = 'FLUENT' version = '14.5' -homepage = 'http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/ANSYS+FLUENT' +homepage = 'http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/Fluid+Dynamics+Products/ANSYS+Fluent' description = """ANSYS FLUENT software contains the broad physical modeling capabilities needed to model flow, turbulence, heat transfer, and reactions for industrial applications ranging from air flow over an aircraft wing to combustion in a furnace, from bubble columns to oil platforms, diff --git a/easybuild/easyconfigs/f/FLUENT/FLUENT-15.0.7.eb b/easybuild/easyconfigs/f/FLUENT/FLUENT-15.0.7.eb index ffe31e9891..0079337b80 100644 --- a/easybuild/easyconfigs/f/FLUENT/FLUENT-15.0.7.eb +++ b/easybuild/easyconfigs/f/FLUENT/FLUENT-15.0.7.eb @@ -1,7 +1,7 @@ name = 'FLUENT' version = '15.0.7' -homepage = 'http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/ANSYS+FLUENT' +homepage = 'http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/Fluid+Dynamics+Products/ANSYS+Fluent' description = """ANSYS FLUENT software contains the broad physical modeling capabilities needed to model flow, turbulence, heat transfer, and reactions for industrial applications ranging from air flow over an aircraft wing to combustion in a furnace, from bubble columns to oil platforms, diff --git a/easybuild/easyconfigs/f/FLUENT/FLUENT-16.0.eb b/easybuild/easyconfigs/f/FLUENT/FLUENT-16.0.eb index d8a60604df..0d42136505 100644 --- a/easybuild/easyconfigs/f/FLUENT/FLUENT-16.0.eb +++ b/easybuild/easyconfigs/f/FLUENT/FLUENT-16.0.eb @@ -1,7 +1,7 @@ name = 'FLUENT' version = '16.0' -homepage = 'http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/ANSYS+FLUENT' +homepage = 'http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/Fluid+Dynamics+Products/ANSYS+Fluent' description = """ANSYS FLUENT software contains the broad physical modeling capabilities needed to model flow, turbulence, heat transfer, and reactions for industrial applications ranging from air flow over an aircraft wing to combustion in a furnace, from bubble columns to oil platforms, -- GitLab From 5efac5d22df02c866887e6b3ebf4a426bf09e704 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Fri, 13 Mar 2015 14:12:40 +0100 Subject: [PATCH 0792/1217] Update and rename Bison-3.0.2-intel-2014.12.eb to Bison-3.0.2-intel-para-2014.12.eb --- ...3.0.2-intel-2014.12.eb => Bison-3.0.2-intel-para-2014.12.eb} | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/b/Bison/{Bison-3.0.2-intel-2014.12.eb => Bison-3.0.2-intel-para-2014.12.eb} (90%) diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2014.12.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-para-2014.12.eb similarity index 90% rename from easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2014.12.eb rename to easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-para-2014.12.eb index 3375224689..19b016a0fc 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-2014.12.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-para-2014.12.eb @@ -6,7 +6,7 @@ version = '3.0.2' homepage = 'http://www.gnu.org/software/bison' description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" -toolchain = {'name': 'intel', 'version': '2014.12'} +toolchain = {'name': 'intel-para', 'version': '2014.12'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] -- GitLab From 30759cd5e3239078cd93100db910a1e6e88d5d83 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Fri, 13 Mar 2015 14:13:31 +0100 Subject: [PATCH 0793/1217] Update Bison-3.0.2-intel-para-2014.12.eb --- easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-para-2014.12.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-para-2014.12.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-para-2014.12.eb index 19b016a0fc..1b7cd1f48f 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-para-2014.12.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-intel-para-2014.12.eb @@ -6,6 +6,7 @@ version = '3.0.2' homepage = 'http://www.gnu.org/software/bison' description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + toolchain = {'name': 'intel-para', 'version': '2014.12'} sources = [SOURCELOWER_TAR_GZ] -- GitLab From 91fe398247da33ad9af8dd357fb5f62e3467551d Mon Sep 17 00:00:00 2001 From: ocaisa Date: Fri, 13 Mar 2015 14:13:49 +0100 Subject: [PATCH 0794/1217] Update flex-2.5.39-intel-para-2014.12.eb --- easybuild/easyconfigs/f/flex/flex-2.5.39-intel-para-2014.12.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-para-2014.12.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-para-2014.12.eb index 302f7d657a..469e32f3d7 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-para-2014.12.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-para-2014.12.eb @@ -4,6 +4,7 @@ version = '2.5.39' homepage = 'http://flex.sourceforge.net/' description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + toolchain = {'name': 'intel-para', 'version': '2014.12'} toolchainopts = {'pic': True} -- GitLab From 36a497286fb694f837dbb6746b426286fe938264 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Fri, 13 Mar 2015 14:14:11 +0100 Subject: [PATCH 0795/1217] Update Libint-1.1.4-intel-para-2014.12.eb --- .../easyconfigs/l/Libint/Libint-1.1.4-intel-para-2014.12.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-para-2014.12.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-para-2014.12.eb index 4cc465b70d..131e4988f1 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-para-2014.12.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-para-2014.12.eb @@ -4,6 +4,7 @@ version = '1.1.4' homepage = 'http://www.files.chem.vt.edu/chem-dept/valeev/software/libint/libint.html' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" + toolchain = {'name': 'intel-para', 'version': '2014.12'} toolchainopts = {'opt': True, 'optarch': True} -- GitLab From fad7ba29390df22f266d9da7da3bfe47bfc56942 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Fri, 13 Mar 2015 15:17:16 +0100 Subject: [PATCH 0796/1217] moved new BLAST versions to BLAST+ --- .../BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb} | 2 +- .../BLAST+-2.2.30_basename-fixes.patch} | 0 .../BLAST+-2.2.30_ictce-fixes.patch} | 0 3 files changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/b/{BLAST/BLAST-2.2.30-intel-2015a-Python-2.7.9.eb => BLAST+/BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb} (98%) rename easybuild/easyconfigs/b/{BLAST/BLAST-2.2.30_basename-fixes.patch => BLAST+/BLAST+-2.2.30_basename-fixes.patch} (100%) rename easybuild/easyconfigs/b/{BLAST/BLAST-2.2.30_ictce-fixes.patch => BLAST+/BLAST+-2.2.30_ictce-fixes.patch} (100%) diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb similarity index 98% rename from easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-intel-2015a-Python-2.7.9.eb rename to easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb index 66879c0ee8..ccc52c6df7 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb @@ -12,7 +12,7 @@ easyblock = 'ConfigureMake' -name = 'BLAST' +name = 'BLAST+' version = '2.2.30' versionsuffix = '-Python-2.7.9' diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30_basename-fixes.patch b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30_basename-fixes.patch similarity index 100% rename from easybuild/easyconfigs/b/BLAST/BLAST-2.2.30_basename-fixes.patch rename to easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30_basename-fixes.patch diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.30_ictce-fixes.patch b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30_ictce-fixes.patch similarity index 100% rename from easybuild/easyconfigs/b/BLAST/BLAST-2.2.30_ictce-fixes.patch rename to easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30_ictce-fixes.patch -- GitLab From 9bf1062a962ecbed9958b8490acd76e106d81948 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Fri, 13 Mar 2015 15:17:54 +0100 Subject: [PATCH 0797/1217] Update M4-1.4.17-intel-para-2014.12.eb --- easybuild/easyconfigs/m/M4/M4-1.4.17-intel-para-2014.12.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-para-2014.12.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-para-2014.12.eb index ef9457f93b..37a6837b2b 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-para-2014.12.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-para-2014.12.eb @@ -7,6 +7,7 @@ homepage = 'http://www.gnu.org/software/m4/m4.html' description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + toolchain = {'name': 'intel-para', 'version': '2014.12'} sources = [SOURCELOWER_TAR_GZ] -- GitLab From 5e8258f7fa091d4d362dc51a4699e64d3ef4fa9c Mon Sep 17 00:00:00 2001 From: ocaisa Date: Fri, 13 Mar 2015 15:20:31 +0100 Subject: [PATCH 0798/1217] Update CP2K-2.6.0-intel-para-2014.12.eb --- easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.12.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.12.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.12.eb index 078ff065ca..12c7a36d02 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.12.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.12.eb @@ -37,4 +37,5 @@ ignore_regtest_fails = True moduleclass = 'chem' -runtest = "False" +# If you do not want to run tests uncomment this line +# runtest = "False" -- GitLab From 6a79db9bb276ecb5e7e6396fdd0ed991724cbf60 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Fri, 13 Mar 2015 15:21:36 +0100 Subject: [PATCH 0799/1217] prefer http over ftp --- .../b/BLAST+/BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb index ccc52c6df7..87e25ede69 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-intel-2015a-Python-2.7.9.eb @@ -25,7 +25,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} # eg. ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-src.tar.gz sources = ['ncbi-blast-%(version)s+-src.tar.gz'] -source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] +source_urls = ['http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] patches = [ '%(name)s-%(version)s_ictce-fixes.patch', -- GitLab From 8fcdb64d3508e73e88862b379125102044910b93 Mon Sep 17 00:00:00 2001 From: ocaisa Date: Fri, 13 Mar 2015 15:23:53 +0100 Subject: [PATCH 0800/1217] Update CP2K-2.6.0-intel-para-2014.12.eb --- easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.12.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.12.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.12.eb index 12c7a36d02..3579b5cbb6 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.12.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-intel-para-2014.12.eb @@ -35,7 +35,7 @@ parallel = 1 # regression test reports failures ignore_regtest_fails = True -moduleclass = 'chem' - # If you do not want to run tests uncomment this line # runtest = "False" + +moduleclass = 'chem' -- GitLab From 80fdd93c414ebe4890105ea6d817f165614e94ce Mon Sep 17 00:00:00 2001 From: ocaisa Date: Fri, 13 Mar 2015 16:45:51 +0100 Subject: [PATCH 0801/1217] Update libxc-2.2.1-intel-para-2014.12.eb --- easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-para-2014.12.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-para-2014.12.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-para-2014.12.eb index 4588f32bf0..8ba57e35c5 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-para-2014.12.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-para-2014.12.eb @@ -23,7 +23,7 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' #runtest = 'check' sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so', 'lib/lixcf90.a', 'lib/lixcf90.so'], + 'files': ['lib/libxc.a', 'lib/libxc.so', 'lib/libxcf90.a', 'lib/libxcf90.so'], 'dirs': ['include'], } -- GitLab From 4570f473b0891ad54ef7114f4e3c13f7923c3fa7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 13 Mar 2015 17:40:34 +0100 Subject: [PATCH 0802/1217] one patch suffices to fix basename issue --- .../b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb | 4 +--- .../easyconfigs/b/BLAST+/blast+_2.2.30.patch | 16 ---------------- 2 files changed, 1 insertion(+), 19 deletions(-) delete mode 100644 easybuild/easyconfigs/b/BLAST+/blast+_2.2.30.patch diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb index 54dfbd50cc..505c849588 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb @@ -25,9 +25,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} sources = ['ncbi-blast-%(version)s+-src.tar.gz'] source_urls = ['http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] -# patch not needed in BLAST+ 2.2.31 or higher -# http://www.ncbi.nlm.nih.gov/viewvc/v1?view=revision&revision=65204 -patches = ['blast+_%(version)s.patch'] +patches = ['%(name)s-%(version)s_basename-fixes.patch'] dependencies = [('Boost', '1.57.0')] diff --git a/easybuild/easyconfigs/b/BLAST+/blast+_2.2.30.patch b/easybuild/easyconfigs/b/BLAST+/blast+_2.2.30.patch deleted file mode 100644 index d5d2d3b8b7..0000000000 --- a/easybuild/easyconfigs/b/BLAST+/blast+_2.2.30.patch +++ /dev/null @@ -1,16 +0,0 @@ -don't hardcode path to basename - Pablo Escobar (sciCORE, SIB, UniBAS) -This patch is not needed in BLAST+ version 2.2.31 or higher -http://www.ncbi.nlm.nih.gov/viewvc/v1?view=revision&revision=65204 - -diff -ru ncbi-blast-2.2.30+-src.orig/c++/src/build-system/Makefile.in.top ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.top ---- ncbi-blast-2.2.30+-src.orig/c++/src/build-system/Makefile.in.top 2014-08-01 20:43:59.000000000 +0200 -+++ ncbi-blast-2.2.30+-src/c++/src/build-system/Makefile.in.top 2015-03-10 15:11:09.140548221 +0100 -@@ -46,7 +46,7 @@ - -rm -f $(libdir)/lib*-static.a - cd $(libdir) && \ - for x in *.a; do \ -- $(LN_S) "$$x" "`/usr/bin/basename \"$$x\" .a`-static.a"; \ -+ $(LN_S) "$$x" "`basename \"$$x\" .a`-static.a"; \ - done - cd $(includedir0) && find * -name CVS -prune -o -print |\ - cpio -pd $(pincludedir) -- GitLab From 318f1e8a1d7d9d088435a95242cae87f0089ffba Mon Sep 17 00:00:00 2001 From: pescobar Date: Mon, 16 Mar 2015 08:55:10 +0100 Subject: [PATCH 0803/1217] added zlib easyconfig for goolf-1.7.20 --- .../z/zlib/zlib-1.2.8-goolf-1.7.20.eb | 22 +++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.7.20.eb diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.7.20.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.7.20.eb new file mode 100644 index 0000000000..2e006a7aca --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.7.20.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 0074628c2c4ea21b7b28e352ec671192a97d58b7 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Mon, 16 Mar 2015 12:05:31 +0100 Subject: [PATCH 0804/1217] Version update of pbr plus mock and pytz packages --- easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb | 8 +++++++- .../easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb | 8 +++++++- .../easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb | 8 +++++++- 3 files changed, 21 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb index 551b551518..bb3f4f62c6 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb @@ -55,7 +55,7 @@ exts_list = [ ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], }), - ('pbr', '0.10.7', { + ('pbr', '0.10.8', { 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], }), ('lockfile', '0.10.2', { @@ -100,6 +100,12 @@ exts_list = [ ('netaddr', '0.7.13', { 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], }), + ('mock', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], + }), + ('pytz', '2014.10', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb index 476f839933..08d18ce9ad 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb @@ -55,7 +55,7 @@ exts_list = [ ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], }), - ('pbr', '0.10.7', { + ('pbr', '0.10.8', { 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], }), ('lockfile', '0.10.2', { @@ -100,6 +100,12 @@ exts_list = [ ('netaddr', '0.7.13', { 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], }), + ('mock', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], + }), + ('pytz', '2014.10', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb index 70fcbf0f5a..640c607060 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb @@ -58,7 +58,7 @@ exts_list = [ ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], }), - ('pbr', '0.10.7', { + ('pbr', '0.10.8', { 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], }), ('lockfile', '0.10.2', { @@ -103,6 +103,12 @@ exts_list = [ ('netaddr', '0.7.13', { 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], }), + ('mock', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], + }), + ('pytz', '2014.10', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], + }), ] moduleclass = 'lang' -- GitLab From a4c38e951f35abdfbd77b8f7890ddf93e6ab0941 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Mon, 16 Mar 2015 12:18:29 +0100 Subject: [PATCH 0805/1217] python deps moved to python, qhull patch renamed --- ...atplotlib-1.4.3-foss-2015a-Python-2.7.9.eb | 2 -- ...tplotlib-1.4.3-intel-2015a-Python-2.7.9.eb | 4 +-- ...=> matplotlib-1.4.3_Qhull-intel-fix.patch} | 0 .../mock-1.0.1-foss-2015a-Python-2.7.9.eb | 35 ------------------- .../mock-1.0.1-intel-2015a-Python-2.7.9.eb | 35 ------------------- .../pytz-2014.10-foss-2015a-Python-2.7.9.eb | 31 ---------------- .../pytz-2014.10-intel-2015a-Python-2.7.9.eb | 31 ---------------- 7 files changed, 1 insertion(+), 137 deletions(-) rename easybuild/easyconfigs/m/matplotlib/{Qhull-intel-fix.patch => matplotlib-1.4.3_Qhull-intel-fix.patch} (100%) delete mode 100644 easybuild/easyconfigs/m/mock/mock-1.0.1-foss-2015a-Python-2.7.9.eb delete mode 100644 easybuild/easyconfigs/m/mock/mock-1.0.1-intel-2015a-Python-2.7.9.eb delete mode 100644 easybuild/easyconfigs/p/pytz/pytz-2014.10-foss-2015a-Python-2.7.9.eb delete mode 100644 easybuild/easyconfigs/p/pytz/pytz-2014.10-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb index 2a6d8ee18f..b1aa689258 100644 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb @@ -21,8 +21,6 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ (python, pythonversion), - ('mock', '1.0.1', versionsuffix), - ('pytz', '2014.10', versionsuffix), ('zlib', '1.2.8'), ('freetype', '2.5.5'), ('libpng', '1.6.16'), diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb index 5c56e9a7ef..38e482b680 100644 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb @@ -13,7 +13,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] -patches = [('Qhull-intel-fix.patch')] +patches = [('matplotlib-%(version)s_Qhull-intel-fix.patch')] python = "Python" pythonversion = '2.7.9' @@ -23,8 +23,6 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ (python, pythonversion), - ('mock', '1.0.1', versionsuffix), - ('pytz', '2014.10', versionsuffix), ('zlib', '1.2.8'), ('freetype', '2.5.5'), ('libpng', '1.6.16'), diff --git a/easybuild/easyconfigs/m/matplotlib/Qhull-intel-fix.patch b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3_Qhull-intel-fix.patch similarity index 100% rename from easybuild/easyconfigs/m/matplotlib/Qhull-intel-fix.patch rename to easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3_Qhull-intel-fix.patch diff --git a/easybuild/easyconfigs/m/mock/mock-1.0.1-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/m/mock/mock-1.0.1-foss-2015a-Python-2.7.9.eb deleted file mode 100644 index baada2e6cf..0000000000 --- a/easybuild/easyconfigs/m/mock/mock-1.0.1-foss-2015a-Python-2.7.9.eb +++ /dev/null @@ -1,35 +0,0 @@ -easyblock = "PythonPackage" - -name = 'mock' -version = '1.0.1' - -homepage = 'https://pypi.python.org/pypi/mock' -description = """A Python Mocking and Patching Library for Testing. - mock is a library for testing in Python. - It allows you to replace parts of your system under test - with mock objects and make assertions about how they have been used.""" - -toolchain = {'name': 'foss', 'version': '2015a'} - -source_urls = ['http://pypi.python.org/packages/source/%s/%s/' % (name[0],name)] -sources = [SOURCE_TAR_GZ] - -python = "Python" -pythonversion = '2.7.9' -#mock is part of Python 3.3 -pyshortver = ".".join(pythonversion.split(".")[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - -dependencies = [ - (python, pythonversion), -] - -pyprefix = 'lib/python%s/site-packages' % pyshortver -eggname = '%%(name)s-%%(version)s-py%s.egg' % pyshortver -sanity_check_paths = { - 'files': [], - 'dirs': [('%s/%%(name)s' % pyprefix, '%s/%s' % (pyprefix, eggname))], -} - -moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/mock/mock-1.0.1-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/m/mock/mock-1.0.1-intel-2015a-Python-2.7.9.eb deleted file mode 100644 index afc6e7f4bc..0000000000 --- a/easybuild/easyconfigs/m/mock/mock-1.0.1-intel-2015a-Python-2.7.9.eb +++ /dev/null @@ -1,35 +0,0 @@ -easyblock = "PythonPackage" - -name = 'mock' -version = '1.0.1' - -homepage = 'https://pypi.python.org/pypi/mock' -description = """A Python Mocking and Patching Library for Testing. - mock is a library for testing in Python. - It allows you to replace parts of your system under test - with mock objects and make assertions about how they have been used.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -source_urls = ['http://pypi.python.org/packages/source/%s/%s/' % (name[0],name)] -sources = [SOURCE_TAR_GZ] - -python = "Python" -pythonversion = '2.7.9' -#mock is part of Python 3.3 -pyshortver = ".".join(pythonversion.split(".")[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - -dependencies = [ - (python, pythonversion), -] - -pyprefix = 'lib/python%s/site-packages' % pyshortver -eggname = '%%(name)s-%%(version)s-py%s.egg' % pyshortver -sanity_check_paths = { - 'files': [], - 'dirs': [('%s/%%(name)s' % pyprefix, '%s/%s' % (pyprefix, eggname))], -} - -moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pytz/pytz-2014.10-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/pytz/pytz-2014.10-foss-2015a-Python-2.7.9.eb deleted file mode 100644 index 2362eab77c..0000000000 --- a/easybuild/easyconfigs/p/pytz/pytz-2014.10-foss-2015a-Python-2.7.9.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = "PythonPackage" - -name = 'pytz' -version = '2014.10' - -homepage = 'https://pypi.python.org/pypi/pytz' -description = """World timezone definitions, modern and historical.""" - -toolchain = {'name': 'foss', 'version': '2015a'} - -source_urls = ['http://pypi.python.org/packages/source/%s/%s/' % (name[0],name)] -sources = [SOURCE_TAR_GZ] - -python = "Python" -pythonversion = '2.7.9' -pyshortver = ".".join(pythonversion.split(".")[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - -dependencies = [ - (python, pythonversion), -] - -pyprefix = 'lib/python%s/site-packages' % pyshortver -eggname = '%%(name)s-%%(version)s-py%s.egg' % pyshortver -sanity_check_paths = { - 'files': [], - 'dirs': [('%s/%%(name)s' % pyprefix, '%s/%s' % (pyprefix, eggname))], -} - -moduleclass = 'system' diff --git a/easybuild/easyconfigs/p/pytz/pytz-2014.10-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/pytz/pytz-2014.10-intel-2015a-Python-2.7.9.eb deleted file mode 100644 index 37fedc7a5b..0000000000 --- a/easybuild/easyconfigs/p/pytz/pytz-2014.10-intel-2015a-Python-2.7.9.eb +++ /dev/null @@ -1,31 +0,0 @@ -easyblock = "PythonPackage" - -name = 'pytz' -version = '2014.10' - -homepage = 'https://pypi.python.org/pypi/pytz' -description = """World timezone definitions, modern and historical.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -source_urls = ['http://pypi.python.org/packages/source/%s/%s/' % (name[0],name)] -sources = [SOURCE_TAR_GZ] - -python = "Python" -pythonversion = '2.7.9' -pyshortver = ".".join(pythonversion.split(".")[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - -dependencies = [ - (python, pythonversion), -] - -pyprefix = 'lib/python%s/site-packages' % pyshortver -eggname = '%%(name)s-%%(version)s-py%s.egg' % pyshortver -sanity_check_paths = { - 'files': [], - 'dirs': [('%s/%%(name)s' % pyprefix, '%s/%s' % (pyprefix, eggname))], -} - -moduleclass = 'system' -- GitLab From 8b31ede2b9a500f8d3b73b66a543b42331a42272 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Mon, 16 Mar 2015 14:24:45 +0100 Subject: [PATCH 0806/1217] implicit zlib dep removed --- .../m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb | 1 - .../m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb | 1 - 2 files changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb index b1aa689258..da06531921 100644 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb @@ -21,7 +21,6 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ (python, pythonversion), - ('zlib', '1.2.8'), ('freetype', '2.5.5'), ('libpng', '1.6.16'), ] diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb index 38e482b680..3a24c2da81 100644 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb @@ -23,7 +23,6 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ (python, pythonversion), - ('zlib', '1.2.8'), ('freetype', '2.5.5'), ('libpng', '1.6.16'), ] -- GitLab From b3a37fdab5163d030b18d81a977cc0893e0c23dc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 17 Mar 2015 10:52:46 +0100 Subject: [PATCH 0807/1217] fix SCOTCH homepage --- .../s/SCOTCH/SCOTCH-5.1.12b_esmumps-goalf-1.1.0-no-OFED.eb | 2 +- .../easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-goolf-1.4.10.eb | 2 +- .../easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-ictce-4.0.6.eb | 2 +- .../easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-ictce-4.1.13.eb | 2 +- .../easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-ictce-5.3.0.eb | 2 +- .../easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-gmpolf-1.4.8.eb | 2 +- .../easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-goolf-1.4.10.eb | 2 +- .../easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-4.1.13.eb | 2 +- .../easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-5.3.0.eb | 2 +- .../easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-5.5.0.eb | 2 +- .../easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-6.2.5.eb | 2 +- .../easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2014b.eb | 2 +- .../easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-iqacml-4.4.13.eb | 2 +- easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.3-intel-2015a.eb | 2 +- 14 files changed, 14 insertions(+), 14 deletions(-) diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-goalf-1.1.0-no-OFED.eb index 4f5ffc4906..616ce83405 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-goalf-1.1.0-no-OFED.eb @@ -1,7 +1,7 @@ name = 'SCOTCH' version = '5.1.12b_esmumps' -homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +homepage = 'http://gforge.inria.fr/projects/scotch/' description = """Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-goolf-1.4.10.eb index 8e74d1333e..f7e1fa75af 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-goolf-1.4.10.eb @@ -1,7 +1,7 @@ name = 'SCOTCH' version = '5.1.12b_esmumps' -homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +homepage = 'http://gforge.inria.fr/projects/scotch/' description = """Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-ictce-4.0.6.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-ictce-4.0.6.eb index 8cef85de4d..7fa9486295 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-ictce-4.0.6.eb @@ -1,7 +1,7 @@ name = 'SCOTCH' version = '5.1.12b_esmumps' -homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +homepage = 'http://gforge.inria.fr/projects/scotch/' description = """Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-ictce-4.1.13.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-ictce-4.1.13.eb index 03a76886ef..89be85ee36 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-ictce-4.1.13.eb @@ -1,7 +1,7 @@ name = 'SCOTCH' version = '5.1.12b_esmumps' -homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +homepage = 'http://gforge.inria.fr/projects/scotch/' description = """Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-ictce-5.3.0.eb index beb56ccffe..63e54d60a9 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-5.1.12b_esmumps-ictce-5.3.0.eb @@ -1,7 +1,7 @@ name = 'SCOTCH' version = '5.1.12b_esmumps' -homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +homepage = 'http://gforge.inria.fr/projects/scotch/' description = """Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-gmpolf-1.4.8.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-gmpolf-1.4.8.eb index fbe9ad703d..c0f61c056b 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-gmpolf-1.4.8.eb @@ -1,7 +1,7 @@ name = 'SCOTCH' version = '6.0.0_esmumps' -homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +homepage = 'http://gforge.inria.fr/projects/scotch/' description = """Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-goolf-1.4.10.eb index f88cac060b..adc2bceafc 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-goolf-1.4.10.eb @@ -1,7 +1,7 @@ name = 'SCOTCH' version = '6.0.0_esmumps' -homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +homepage = 'http://gforge.inria.fr/projects/scotch/' description = """Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-4.1.13.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-4.1.13.eb index 96753b8111..ea32ffc384 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-4.1.13.eb @@ -1,7 +1,7 @@ name = 'SCOTCH' version = '6.0.0_esmumps' -homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +homepage = 'http://gforge.inria.fr/projects/scotch/' description = """Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-5.3.0.eb index 7bad11e6da..8e693c1ca4 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-5.3.0.eb @@ -1,7 +1,7 @@ name = 'SCOTCH' version = '6.0.0_esmumps' -homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +homepage = 'http://gforge.inria.fr/projects/scotch/' description = """Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-5.5.0.eb index 80933ffd85..b0d4836a13 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-5.5.0.eb @@ -1,7 +1,7 @@ name = 'SCOTCH' version = '6.0.0_esmumps' -homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +homepage = 'http://gforge.inria.fr/projects/scotch/' description = """Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-6.2.5.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-6.2.5.eb index 787bd5cae8..b9f29b45c5 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-ictce-6.2.5.eb @@ -1,7 +1,7 @@ name = 'SCOTCH' version = '6.0.0_esmumps' -homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +homepage = 'http://gforge.inria.fr/projects/scotch/' description = """Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2014b.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2014b.eb index c3124c78ca..89020e5a6b 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2014b.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-intel-2014b.eb @@ -1,7 +1,7 @@ name = 'SCOTCH' version = '6.0.0_esmumps' -homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +homepage = 'http://gforge.inria.fr/projects/scotch/' description = """Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-iqacml-4.4.13.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-iqacml-4.4.13.eb index 14850741f6..3511ad489c 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-iqacml-4.4.13.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.0_esmumps-iqacml-4.4.13.eb @@ -1,7 +1,7 @@ name = 'SCOTCH' version = '6.0.0_esmumps' -homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +homepage = 'http://gforge.inria.fr/projects/scotch/' description = """Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.3-intel-2015a.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.3-intel-2015a.eb index 9c8e465231..f4c56ce013 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.3-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.3-intel-2015a.eb @@ -1,7 +1,7 @@ name = 'SCOTCH' version = '6.0.3' -homepage = 'http://www.labri.fr/perso/pelegrin/scotch/' +homepage = 'http://gforge.inria.fr/projects/scotch/' description = """Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" -- GitLab From 381a35ceccf1174455c585b8738798dc99cebcde Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 17 Mar 2015 13:42:53 +0100 Subject: [PATCH 0808/1217] add easyconfig for OpenFOAM 2.3.1 with intel/2015a --- .../o/OpenFOAM/OpenFOAM-2.3.1-intel-2015a.eb | 32 +++ .../o/OpenFOAM/cleanup-OpenFOAM-2.3.1.patch | 235 ++++++++++++++++++ .../o/OpenFOAM/cleanup-ThirdParty-2.3.1.patch | 55 ++++ .../s/SCOTCH/SCOTCH-6.0.4-intel-2015a.eb | 14 ++ 4 files changed, 336 insertions(+) create mode 100644 easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.1.patch create mode 100644 easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.3.1.patch create mode 100644 easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-intel-2015a.eb diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.1-intel-2015a.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.1-intel-2015a.eb new file mode 100644 index 0000000000..06ceafc8c9 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.1-intel-2015a.eb @@ -0,0 +1,32 @@ +name = 'OpenFOAM' +version = '2.3.1' + +homepage = 'http://www.openfoam.com/' +description = """OpenFOAM is a free, open source CFD software package. + OpenFOAM has an extensive range of features to solve anything from complex fluid flows + involving chemical reactions, turbulence and heat transfer, + to solid dynamics and electromagnetics.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://downloads.sourceforge.net/foam/%(version)s'] +sources = [ + SOURCE_TGZ, + 'ThirdParty-%(version)s.tgz', +] + +patches = [ + 'cleanup-OpenFOAM-%(version)s.patch', + 'OpenFOAM-2.3.0_libreadline.patch', + ('cleanup-ThirdParty-%(version)s.patch', ".."), # patch should not be applied in OpenFOAM subdir +] + +dependencies = [ + ('libreadline', '6.3'), + ('SCOTCH', '6.0.4'), + ('ncurses', '5.9'), +] + +builddependencies = [('flex', '2.5.39')] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.1.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.1.patch new file mode 100644 index 0000000000..9b7f790198 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.1.patch @@ -0,0 +1,235 @@ +diff -ru OpenFOAM-2.3.1.orig/etc/bashrc OpenFOAM-2.3.1/etc/bashrc +--- OpenFOAM-2.3.1.orig/etc/bashrc 2014-12-04 18:52:43.000000000 +0100 ++++ OpenFOAM-2.3.1/etc/bashrc 2015-03-17 11:10:58.638236425 +0100 +@@ -63,7 +63,7 @@ + + #- Compiler: + # WM_COMPILER = Gcc | Gcc45 | Gcc46 | Gcc47 | Clang | Icc (Intel icc) +-export WM_COMPILER=Gcc ++: ${WM_COMPILER:=Gcc}; export WM_COMPILER + unset WM_COMPILER_ARCH WM_COMPILER_LIB_ARCH + + #- Architecture: +@@ -81,7 +81,7 @@ + #- MPI implementation: + # WM_MPLIB = SYSTEMOPENMPI | OPENMPI | MPICH | MPICH-GM | HPMPI + # | GAMMA | MPI | QSMPI | SGIMPI +-export WM_MPLIB=SYSTEMOPENMPI ++: ${WM_MPLIB:=SYSTEMOPENMPI}; export WM_MPLIB + + #- Operating System: + # WM_OSTYPE = POSIX | ??? +@@ -115,7 +115,7 @@ + + # Location of third-party software + # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +-export WM_THIRD_PARTY_DIR=$WM_PROJECT_INST_DIR/ThirdParty-$WM_PROJECT_VERSION ++: ${WM_THIRD_PARTY_DIR:=$WM_PROJECT_INST_DIR/ThirdParty-$WM_PROJECT_VERSION}; export WM_THIRD_PARTY_DIR + + # Location of site-specific templates etc + # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +diff -ru OpenFOAM-2.3.1.orig/etc/config/scotch.sh OpenFOAM-2.3.1/etc/config/scotch.sh +--- OpenFOAM-2.3.1.orig/etc/config/scotch.sh 2014-12-04 18:52:43.000000000 +0100 ++++ OpenFOAM-2.3.1/etc/config/scotch.sh 2015-03-17 11:10:09.815948216 +0100 +@@ -33,7 +33,11 @@ + # during the wmake process + #------------------------------------------------------------------------------ + +-export SCOTCH_VERSION=scotch_6.0.0 +-export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$SCOTCH_VERSION ++if [ -n "${SCOTCH_ROOT}" ] ; then ++ export SCOTCH_ARCH_PATH="${SCOTCH_ROOT}" ++else ++ export SCOTCH_VERSION=scotch_6.0.0 ++ export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$SCOTCH_VERSION ++fi + + # ----------------------------------------------------------------------------- +diff -ru OpenFOAM-2.3.1.orig/etc/config/settings.csh OpenFOAM-2.3.1/etc/config/settings.csh +--- OpenFOAM-2.3.1.orig/etc/config/settings.csh 2014-12-04 18:52:43.000000000 +0100 ++++ OpenFOAM-2.3.1/etc/config/settings.csh 2015-03-17 11:10:09.815948216 +0100 +@@ -336,7 +336,7 @@ + # Communications library + # ~~~~~~~~~~~~~~~~~~~~~~ + +-unsetenv MPI_ARCH_PATH MPI_HOME FOAM_MPI_LIBBIN ++#unsetenv MPI_ARCH_PATH MPI_HOME FOAM_MPI_LIBBIN + + switch ("$WM_MPLIB") + case SYSTEMOPENMPI: +diff -ru OpenFOAM-2.3.1.orig/etc/config/settings.sh OpenFOAM-2.3.1/etc/config/settings.sh +--- OpenFOAM-2.3.1.orig/etc/config/settings.sh 2014-12-04 18:52:43.000000000 +0100 ++++ OpenFOAM-2.3.1/etc/config/settings.sh 2015-03-17 11:10:09.815948216 +0100 +@@ -356,7 +356,7 @@ + # Communications library + # ~~~~~~~~~~~~~~~~~~~~~~ + +-unset MPI_ARCH_PATH MPI_HOME FOAM_MPI_LIBBIN ++#unset MPI_ARCH_PATH MPI_HOME FOAM_MPI_LIBBIN + + case "$WM_MPLIB" in + SYSTEMOPENMPI) +@@ -524,6 +524,11 @@ + _foamAddPath $MPI_ARCH_PATH/bin64 + _foamAddLib $MPI_ARCH_PATH/lib64 + ;; ++ ++EASYBUILDMPI) ++ export FOAM_MPI=mpi ++ ;; ++ + *) + export FOAM_MPI=dummy + ;; +diff -ru OpenFOAM-2.3.1.orig/src/parallel/decompose/ptscotchDecomp/lnInclude/ptscotchDecomp.C OpenFOAM-2.3.1/src/parallel/decompose/ptscotchDecomp/lnInclude/ptscotchDecomp.C +--- OpenFOAM-2.3.1.orig/src/parallel/decompose/ptscotchDecomp/lnInclude/ptscotchDecomp.C 2014-12-04 18:52:43.000000000 +0100 ++++ OpenFOAM-2.3.1/src/parallel/decompose/ptscotchDecomp/lnInclude/ptscotchDecomp.C 2015-03-17 11:10:09.815948216 +0100 +@@ -112,6 +112,8 @@ + + \*---------------------------------------------------------------------------*/ + ++#include "mpi.h" ++ + #include "ptscotchDecomp.H" + #include "addToRunTimeSelectionTable.H" + #include "Time.H" +@@ -121,8 +123,8 @@ + + extern "C" + { +-#include + #include "mpi.h" ++#include + #include "ptscotch.h" + } + +diff -ru OpenFOAM-2.3.1.orig/src/parallel/decompose/ptscotchDecomp/Make/options OpenFOAM-2.3.1/src/parallel/decompose/ptscotchDecomp/Make/options +--- OpenFOAM-2.3.1.orig/src/parallel/decompose/ptscotchDecomp/Make/options 2014-12-04 18:52:43.000000000 +0100 ++++ OpenFOAM-2.3.1/src/parallel/decompose/ptscotchDecomp/Make/options 2015-03-17 11:10:09.815948216 +0100 +@@ -3,10 +3,8 @@ + + EXE_INC = \ + $(PFLAGS) $(PINC) \ +- -I$(SCOTCH_ROOT)/include \ + -I$(SCOTCH_ARCH_PATH)/include/$(FOAM_MPI) \ +- -I/usr/include/scotch \ + -I../decompositionMethods/lnInclude + + LIB_LIBS = \ +- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit ${LINK_FLAGS} -lrt ++ -L$(SCOTCH_ARCH_PATH)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit ${LINK_FLAGS} -lrt +diff -ru OpenFOAM-2.3.1.orig/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C OpenFOAM-2.3.1/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C +--- OpenFOAM-2.3.1.orig/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2014-12-04 18:52:43.000000000 +0100 ++++ OpenFOAM-2.3.1/src/parallel/decompose/ptscotchDecomp/ptscotchDecomp.C 2015-03-17 11:10:09.815948216 +0100 +@@ -112,6 +112,8 @@ + + \*---------------------------------------------------------------------------*/ + ++#include "mpi.h" ++ + #include "ptscotchDecomp.H" + #include "addToRunTimeSelectionTable.H" + #include "Time.H" +@@ -121,8 +123,8 @@ + + extern "C" + { +-#include + #include "mpi.h" ++#include + #include "ptscotch.h" + } + +diff -ru OpenFOAM-2.3.1.orig/src/parallel/decompose/scotchDecomp/Make/options OpenFOAM-2.3.1/src/parallel/decompose/scotchDecomp/Make/options +--- OpenFOAM-2.3.1.orig/src/parallel/decompose/scotchDecomp/Make/options 2014-12-04 18:52:43.000000000 +0100 ++++ OpenFOAM-2.3.1/src/parallel/decompose/scotchDecomp/Make/options 2015-03-17 11:10:09.815948216 +0100 +@@ -7,10 +7,8 @@ + + EXE_INC = \ + $(PFLAGS) $(PINC) \ +- -I$(SCOTCH_ROOT)/include \ + -I$(SCOTCH_ARCH_PATH)/include \ +- -I/usr/include/scotch \ + -I../decompositionMethods/lnInclude + + LIB_LIBS = \ +- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt ++ -L$(SCOTCH_ARCH_PATH)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt +diff -ru OpenFOAM-2.3.1.orig/wmake/rules/linux64Gcc/c OpenFOAM-2.3.1/wmake/rules/linux64Gcc/c +--- OpenFOAM-2.3.1.orig/wmake/rules/linux64Gcc/c 2014-12-04 18:52:43.000000000 +0100 ++++ OpenFOAM-2.3.1/wmake/rules/linux64Gcc/c 2015-03-17 11:10:09.815948216 +0100 +@@ -2,7 +2,7 @@ + + cWARN = -Wall + +-cc = gcc -m64 ++cc = $(MPICC) + + include $(RULES)/c$(WM_COMPILE_OPTION) + +diff -ru OpenFOAM-2.3.1.orig/wmake/rules/linux64Gcc/c++ OpenFOAM-2.3.1/wmake/rules/linux64Gcc/c++ +--- OpenFOAM-2.3.1.orig/wmake/rules/linux64Gcc/c++ 2014-12-04 18:52:43.000000000 +0100 ++++ OpenFOAM-2.3.1/wmake/rules/linux64Gcc/c++ 2015-03-17 11:10:09.815948216 +0100 +@@ -2,7 +2,7 @@ + + c++WARN = -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor + +-CC = g++ -m64 ++CC = $(MPICXX) + + include $(RULES)/c++$(WM_COMPILE_OPTION) + +diff -ru OpenFOAM-2.3.1.orig/wmake/rules/linux64Gcc/cOpt OpenFOAM-2.3.1/wmake/rules/linux64Gcc/cOpt +--- OpenFOAM-2.3.1.orig/wmake/rules/linux64Gcc/cOpt 2014-12-04 18:52:43.000000000 +0100 ++++ OpenFOAM-2.3.1/wmake/rules/linux64Gcc/cOpt 2015-03-17 11:10:09.815948216 +0100 +@@ -1,3 +1,3 @@ + cDBUG = +-cOPT = -O3 ++cOPT = $(CFLAGS) + # -fprefetch-loop-arrays +diff -ru OpenFOAM-2.3.1.orig/wmake/rules/linux64Gcc/c++Opt OpenFOAM-2.3.1/wmake/rules/linux64Gcc/c++Opt +--- OpenFOAM-2.3.1.orig/wmake/rules/linux64Gcc/c++Opt 2014-12-04 18:52:43.000000000 +0100 ++++ OpenFOAM-2.3.1/wmake/rules/linux64Gcc/c++Opt 2015-03-17 11:10:09.815948216 +0100 +@@ -1,3 +1,3 @@ + c++DBUG = +-c++OPT = -O3 ++c++OPT = $(CXXFLAGS) + # -fprefetch-loop-arrays +diff -ru OpenFOAM-2.3.1.orig/wmake/rules/linux64Icc/c OpenFOAM-2.3.1/wmake/rules/linux64Icc/c +--- OpenFOAM-2.3.1.orig/wmake/rules/linux64Icc/c 2014-12-04 18:52:43.000000000 +0100 ++++ OpenFOAM-2.3.1/wmake/rules/linux64Icc/c 2015-03-17 11:10:09.815948216 +0100 +@@ -2,7 +2,7 @@ + + cWARN = + +-cc = icc ++cc = $(MPICC) + + include $(RULES)/c$(WM_COMPILE_OPTION) + +diff -ru OpenFOAM-2.3.1.orig/wmake/rules/linux64Icc/c++ OpenFOAM-2.3.1/wmake/rules/linux64Icc/c++ +--- OpenFOAM-2.3.1.orig/wmake/rules/linux64Icc/c++ 2014-12-04 18:52:43.000000000 +0100 ++++ OpenFOAM-2.3.1/wmake/rules/linux64Icc/c++ 2015-03-17 11:10:09.815948216 +0100 +@@ -2,7 +2,7 @@ + + c++WARN = -wd327,525,654,819,1125,1476,1505,1572 + +-CC = icpc -std=c++0x ++CC = $(MPICXX) + + include $(RULES)/c++$(WM_COMPILE_OPTION) + +diff -ru OpenFOAM-2.3.1.orig/wmake/rules/linux64Icc/cOpt OpenFOAM-2.3.1/wmake/rules/linux64Icc/cOpt +--- OpenFOAM-2.3.1.orig/wmake/rules/linux64Icc/cOpt 2014-12-04 18:52:43.000000000 +0100 ++++ OpenFOAM-2.3.1/wmake/rules/linux64Icc/cOpt 2015-03-17 11:10:09.815948216 +0100 +@@ -1,2 +1,2 @@ + cDBUG = +-cOPT = -O3 -no-prec-div ++cOPT = $(CFLAGS) +diff -ru OpenFOAM-2.3.1.orig/wmake/rules/linux64Icc/c++Opt OpenFOAM-2.3.1/wmake/rules/linux64Icc/c++Opt +--- OpenFOAM-2.3.1.orig/wmake/rules/linux64Icc/c++Opt 2014-12-04 18:52:43.000000000 +0100 ++++ OpenFOAM-2.3.1/wmake/rules/linux64Icc/c++Opt 2015-03-17 11:10:09.815948216 +0100 +@@ -1,2 +1,2 @@ + c++DBUG = +-c++OPT = -xHost -O2 -no-prec-div ++c++OPT = $(CXXFLAGS) diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.3.1.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.3.1.patch new file mode 100644 index 0000000000..6dfeb947a3 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.3.1.patch @@ -0,0 +1,55 @@ +diff -ru ThirdParty-2.3.1.ORIG/Allwmake ThirdParty-2.3.1/Allwmake +--- ThirdParty-2.3.1.ORIG/Allwmake 2014-02-06 16:31:37.000000000 +0100 ++++ ThirdParty-2.3.1/Allwmake 2014-07-08 00:32:02.955084962 +0200 +@@ -110,12 +110,12 @@ + ;; + + MPICH) +- if [ -r $MPI_ARCH_PATH/lib/libmpich.so ] ++ if [ -r $MPI_ARCH_PATH/lib64/libmpich.so ] + then + echo " have $WM_MPLIB shared library ($FOAM_MPI)" + echo + echo +- elif [ -r $MPI_ARCH_PATH/lib/libmpich.a ] ++ elif [ -r $MPI_ARCH_PATH/lib64/libmpich.a ] + then + echo " have $WM_MPLIB static library ($FOAM_MPI)" + echo +@@ -195,6 +195,13 @@ + echo " scotch header in $SCOTCH_ARCH_PATH/include" + echo " scotch libs in $FOAM_EXT_LIBBIN" + echo ++elif [ -f $SCOTCH_ARCH_PATH/include/scotch.h \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libscotch.so -o -r $SCOTCH_ARCH_PATH/lib/libscotch.a \) \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libscotcherrexit.so -o -r $SCOTCH_ARCH_PATH/lib/libscotcherrexit.a \) ] ++then ++ echo " scotch header in $SCOTCH_ARCH_PATH/include" ++ echo " scotch libs in $SCOTCH_ARCH_PATH/lib" ++ echo + else + ( + set -x +@@ -256,6 +263,13 @@ + echo " ptscotch header in $SCOTCH_ARCH_PATH/include/$FOAM_MPI" + echo " ptscotch libs in $FOAM_EXT_LIBBIN/$FOAM_MPI" + echo ++ elif [ -f $SCOTCH_ARCH_PATH/include/ptscotch.h \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libptscotch.so -o -r $SCOTCH_ARCH_PATH/lib/libptscotch.a \) \ ++ -a \( -r $SCOTCH_ARCH_PATH/lib/libptscotcherrexit.so -o -r $SCOTCH_ARCH_PATH/lib/libptscotcherrexit.a \) ] ++ then ++ echo " ptscotch header in $SCOTCH_ARCH_PATH/include" ++ echo " ptscotch libs in $SCOTCH_ARCH_PATH/lib" ++ echo + else + ( + set -x +@@ -296,7 +310,7 @@ + fi + + # verify existence of scotch include +- [ -f $SCOTCH_ARCH_PATH/include/$FOAM_MPI/ptscotch.h ] || { ++ [ -f $SCOTCH_ARCH_PATH/include/$FOAM_MPI/ptscotch.h -o -f $SCOTCH_ARCH_PATH/include/ptscotch.h ] || { + echo + echo " WARNING: required include file 'ptscotch.h' not found!" + echo diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-intel-2015a.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-intel-2015a.eb new file mode 100644 index 0000000000..a98a4841f7 --- /dev/null +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-intel-2015a.eb @@ -0,0 +1,14 @@ +name = 'SCOTCH' +version = '6.0.4' + +homepage = 'http://gforge.inria.fr/projects/scotch/' +description = """Software package and libraries for sequential and parallel graph partitioning, +static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = ['http://gforge.inria.fr/frs/download.php/file/34618/'] +sources = ['%(namelower)s_%(version)s.tar.gz'] + +moduleclass = 'math' -- GitLab From d35f2df5b0b67ca5ed2b0f7cb2af85a32816bd15 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 17 Mar 2015 13:47:09 +0100 Subject: [PATCH 0809/1217] add comments in OpenFOAM patch files --- easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.1.patch | 2 ++ easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.3.1.patch | 2 ++ 2 files changed, 4 insertions(+) diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.1.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.1.patch index 9b7f790198..7ad239b41d 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.1.patch +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.1.patch @@ -1,3 +1,5 @@ +fix hardcoded settings, add support for picking up dependencies provided via EasyBuild +author: Kenneth Hoste (kenneth.hoste@ugent.be) diff -ru OpenFOAM-2.3.1.orig/etc/bashrc OpenFOAM-2.3.1/etc/bashrc --- OpenFOAM-2.3.1.orig/etc/bashrc 2014-12-04 18:52:43.000000000 +0100 +++ OpenFOAM-2.3.1/etc/bashrc 2015-03-17 11:10:58.638236425 +0100 diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.3.1.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.3.1.patch index 6dfeb947a3..a2d96019b9 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.3.1.patch +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-ThirdParty-2.3.1.patch @@ -1,3 +1,5 @@ +fix lib dir, using an external SCOTCH +author: Kenneth Hoste (kenneth.hoste@ugent.be) diff -ru ThirdParty-2.3.1.ORIG/Allwmake ThirdParty-2.3.1/Allwmake --- ThirdParty-2.3.1.ORIG/Allwmake 2014-02-06 16:31:37.000000000 +0100 +++ ThirdParty-2.3.1/Allwmake 2014-07-08 00:32:02.955084962 +0200 -- GitLab From 9f4ca3f26fb8e2b0023b5547afffdd8fde37c7b3 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 17 Mar 2015 15:53:22 +0100 Subject: [PATCH 0810/1217] clean up OpenFOAM patch, don't patch symlink lnInclude/ptscotchDecomp.C --- .../o/OpenFOAM/cleanup-OpenFOAM-2.3.1.patch | 22 ------------------- 1 file changed, 22 deletions(-) diff --git a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.1.patch b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.1.patch index 7ad239b41d..98f6555f72 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.1.patch +++ b/easybuild/easyconfigs/o/OpenFOAM/cleanup-OpenFOAM-2.3.1.patch @@ -83,28 +83,6 @@ diff -ru OpenFOAM-2.3.1.orig/etc/config/settings.sh OpenFOAM-2.3.1/etc/config/se *) export FOAM_MPI=dummy ;; -diff -ru OpenFOAM-2.3.1.orig/src/parallel/decompose/ptscotchDecomp/lnInclude/ptscotchDecomp.C OpenFOAM-2.3.1/src/parallel/decompose/ptscotchDecomp/lnInclude/ptscotchDecomp.C ---- OpenFOAM-2.3.1.orig/src/parallel/decompose/ptscotchDecomp/lnInclude/ptscotchDecomp.C 2014-12-04 18:52:43.000000000 +0100 -+++ OpenFOAM-2.3.1/src/parallel/decompose/ptscotchDecomp/lnInclude/ptscotchDecomp.C 2015-03-17 11:10:09.815948216 +0100 -@@ -112,6 +112,8 @@ - - \*---------------------------------------------------------------------------*/ - -+#include "mpi.h" -+ - #include "ptscotchDecomp.H" - #include "addToRunTimeSelectionTable.H" - #include "Time.H" -@@ -121,8 +123,8 @@ - - extern "C" - { --#include - #include "mpi.h" -+#include - #include "ptscotch.h" - } - diff -ru OpenFOAM-2.3.1.orig/src/parallel/decompose/ptscotchDecomp/Make/options OpenFOAM-2.3.1/src/parallel/decompose/ptscotchDecomp/Make/options --- OpenFOAM-2.3.1.orig/src/parallel/decompose/ptscotchDecomp/Make/options 2014-12-04 18:52:43.000000000 +0100 +++ OpenFOAM-2.3.1/src/parallel/decompose/ptscotchDecomp/Make/options 2015-03-17 11:10:09.815948216 +0100 -- GitLab From 486a1243c79c4276252cf0acb6e038f6b32d65b4 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 17 Mar 2015 15:56:35 +0100 Subject: [PATCH 0811/1217] added initial Xmipp easyconfig --- .../m/Xmipp/Xmipp-3.1-intel-2015a.eb | 41 +++++++++++++++++++ 1 file changed, 41 insertions(+) create mode 100644 easybuild/easyconfigs/m/Xmipp/Xmipp-3.1-intel-2015a.eb diff --git a/easybuild/easyconfigs/m/Xmipp/Xmipp-3.1-intel-2015a.eb b/easybuild/easyconfigs/m/Xmipp/Xmipp-3.1-intel-2015a.eb new file mode 100644 index 0000000000..a9deea6d7f --- /dev/null +++ b/easybuild/easyconfigs/m/Xmipp/Xmipp-3.1-intel-2015a.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'Xmipp' +version = '3.1' + +homepage = 'http://xmipp.cnb.csic.es/' +description = "Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy." + +source_urls = ['http://xmipp.cnb.csic.es/Downloads/'] +sources = ['Xmipp-%(version)s-src.tar.gz'] + +toolchain = {'name': 'intel', 'version': '2015a'} + +patches = ['sqlite_imports.patch', 'library_imports.patch'] + +dependencies = [ + ('Python', '2.7.9'), + ('Java', '1.8.0_25', '', True), # TODO: set this to yes in configure + ('freetype', '2.5.3'), + ('gtest', '1.6.0'), # TODO: set this to yes in configure, after patching out all the includes for external/gtest + ('LibTIFF', '4.0.3'), + ('HDF5', '1.8.14', '-gpfs'), + ('libjpeg-turbo', '1.3.1'), + ('FFTW', '3.3.4'), +] + +buildininstalldir = True +unpack_options = '--strip-components=1' + +sanity_check_paths = { + 'files': ['bin/xmipp_mpi_run'], + 'dirs': [], +} + +preconfigopts = """export CXXFLAGS="$CXXFFLAGS -DMPICH_IGNORE_CXX_SEEK -I$EBROOTPYTHON/include/python2.7" && ln -s `which python` xmipp_python && mkdir lib && ln -s $EBROOTPYTHON/lib/python2.7 lib/python2.7 && cd external && tar xf scons.tgz && tar xf bilib.tgz && tar xf condor.tgz && tar xf alglib-3.8.0.cpp.tgz && cd - && mkdir bin && PATH=$PWD:$PATH xmipp_python external/scons/scons.py mode=configure -j 4 --config=force profile=no fast=yes warn=no release=yes gtest=no cuda=no debug=no matlab=no java=no LINKERFORPROGRAMS="$CXX" MPI_BINDIR="$EBROOTIMPI" JAVA_HOME="$JAVA_HOME" JAVAC=javac CC="$CC" CXXFLAGS="$CXXFLAGS" CXX="$CXX" MPI_CC="$MPICC" MPI_CXX="$MPICXX" MPI_INCLUDE="$MPI_INC_DIR" MPI_LIBDIR="$MPI_LIB_DIR" MPI_LINKERFORPROGRAMS="$MPICC" LIBPATH="$LD_LIBRARY_PATH" || """ + +prebuildopts = """export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$PWD/lib && PATH=$PWD:$PATH xmipp_python external/scons/scons.py mode=compile -j 16 || """ + +preinstallopts = "XMIPP_HOME=%(installdir)s PATH=$PWD:$PWD/bin:$PATH PYTHONPATH=$PYTHONPATH:$PWD/protocols:$PWD/libraries/bindings/python/:$EBROOTPYTHON/lib/python2.7/lib-dynload/ python setup.py install || " + +moduleclass = 'vis' -- GitLab From f84701cba915dc2ebaabe06dae0f77bd20a304b3 Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Tue, 17 Mar 2015 16:01:51 +0100 Subject: [PATCH 0812/1217] Add Hadoop-2.5.0-cdh5.3.1 and patch them. The patch it to make TeraSort work with native file systems (MAPREDUCE-5528). --- .../Hadoop-2.4.0-seagate-722af1-native.eb | 2 ++ .../h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb | 27 ++++++++++++++++ .../Hadoop-TeraSort-on-local-filesystem.patch | 31 +++++++++++++++++++ 3 files changed, 60 insertions(+) create mode 100644 easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb create mode 100644 easybuild/easyconfigs/h/Hadoop/Hadoop-TeraSort-on-local-filesystem.patch diff --git a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb index 1a2bc6a274..1bcf4021ce 100644 --- a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb +++ b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb @@ -21,6 +21,8 @@ builddependencies = [ ] dependencies = [(java, javaver)] +patches = [('Hadoop-TeraSort-on-local-filesystem.patch', 0)] + build_native_libs = True moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb new file mode 100644 index 0000000000..fc4e7e2de2 --- /dev/null +++ b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb @@ -0,0 +1,27 @@ +name = 'Hadoop' +version = '2.5.0-cdh5.3.1' + +homepage = 'http://archive.cloudera.com/cdh5/cdh/5/' +description = """Hadoop MapReduce by Cloudera""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['%(namelower)s-%(version)s-src.tar.gz'] +source_urls = ['http://archive.cloudera.com/cdh5/cdh/5/'] + +java = 'Java' +javaver = '1.7.0_76' + +builddependencies = [ + ('Maven', '3.2.3'), + ('protobuf', '2.5.0'), + ('CMake', '3.1.3'), +] + +dependencies = [(java, javaver)] + +patches = [('Hadoop-TeraSort-on-local-filesystem.patch', 0)] + +build_native_libs = True + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/Hadoop/Hadoop-TeraSort-on-local-filesystem.patch b/easybuild/easyconfigs/h/Hadoop/Hadoop-TeraSort-on-local-filesystem.patch new file mode 100644 index 0000000000..afe953b518 --- /dev/null +++ b/easybuild/easyconfigs/h/Hadoop/Hadoop-TeraSort-on-local-filesystem.patch @@ -0,0 +1,31 @@ +diff --git a/hadoop-mapreduce-project/hadoop-mapreduce-examples/src/main/java/org/apache/hadoop/examples/terasort/TeraSort.java b/hadoop-mapreduce-project/hadoop-mapreduce-examples/src/main/java/org/apache/hadoop/examples/terasort/TeraSort.java +index 6022f6c..b913769 100644 +--- hadoop-mapreduce-project/hadoop-mapreduce-examples/src/main/java/org/apache/hadoop/examples/terasort/TeraSort.java ++++ hadoop-mapreduce-project/hadoop-mapreduce-examples/src/main/java/org/apache/hadoop/examples/terasort/TeraSort.java +@@ -28,6 +28,7 @@ + import org.apache.hadoop.conf.Configurable; + import org.apache.hadoop.conf.Configuration; + import org.apache.hadoop.conf.Configured; ++import org.apache.hadoop.filecache.DistributedCache;; + import org.apache.hadoop.fs.FileSystem; + import org.apache.hadoop.fs.Path; + import org.apache.hadoop.io.Text; +@@ -209,8 +210,8 @@ public void setConf(Configuration conf) { + try { + FileSystem fs = FileSystem.getLocal(conf); + this.conf = conf; +- Path partFile = new Path(TeraInputFormat.PARTITION_FILENAME); +- splitPoints = readPartitions(fs, partFile, conf); ++ Path[] localPaths = DistributedCache.getLocalCacheFiles(conf); ++ splitPoints = readPartitions(fs, localPaths[0], conf); + trie = buildTrie(splitPoints, 0, splitPoints.length, new Text(), 2); + } catch (IOException ie) { + throw new IllegalArgumentException("can't read partitions file", ie); +@@ -279,6 +280,7 @@ public static void setOutputReplication(Job job, int value) { + + public int run(String[] args) throws Exception { + LOG.info("starting"); ++ LOG.info("starting with terasort on native filesystem patch"); + Job job = Job.getInstance(getConf()); + Path inputDir = new Path(args[0]); + Path outputDir = new Path(args[1]); -- GitLab From 32d311e8c002f2f7530581228279f8616acc152a Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Tue, 17 Mar 2015 16:52:10 +0100 Subject: [PATCH 0813/1217] Add version suffix of '-native'. --- easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb index fc4e7e2de2..76cfd18862 100644 --- a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb +++ b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb @@ -1,5 +1,6 @@ name = 'Hadoop' version = '2.5.0-cdh5.3.1' +versionsuffix = '-native' homepage = 'http://archive.cloudera.com/cdh5/cdh/5/' description = """Hadoop MapReduce by Cloudera""" -- GitLab From eaefa10a6bec8bd6d52cf208200675d877bc2a59 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 17 Mar 2015 17:40:43 +0100 Subject: [PATCH 0814/1217] cleaned up xmipp easyconfig, added patches --- .../m/Xmipp/Xmipp-3.1-intel-2015a.eb | 41 ------- .../x/Xmipp/Xmipp-3.1-intel-2015a.eb | 25 +++++ .../easyconfigs/x/Xmipp/library_imports.patch | 100 ++++++++++++++++++ .../easyconfigs/x/Xmipp/sqlite_imports.patch | 15 +++ 4 files changed, 140 insertions(+), 41 deletions(-) delete mode 100644 easybuild/easyconfigs/m/Xmipp/Xmipp-3.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/x/Xmipp/library_imports.patch create mode 100644 easybuild/easyconfigs/x/Xmipp/sqlite_imports.patch diff --git a/easybuild/easyconfigs/m/Xmipp/Xmipp-3.1-intel-2015a.eb b/easybuild/easyconfigs/m/Xmipp/Xmipp-3.1-intel-2015a.eb deleted file mode 100644 index a9deea6d7f..0000000000 --- a/easybuild/easyconfigs/m/Xmipp/Xmipp-3.1-intel-2015a.eb +++ /dev/null @@ -1,41 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Xmipp' -version = '3.1' - -homepage = 'http://xmipp.cnb.csic.es/' -description = "Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy." - -source_urls = ['http://xmipp.cnb.csic.es/Downloads/'] -sources = ['Xmipp-%(version)s-src.tar.gz'] - -toolchain = {'name': 'intel', 'version': '2015a'} - -patches = ['sqlite_imports.patch', 'library_imports.patch'] - -dependencies = [ - ('Python', '2.7.9'), - ('Java', '1.8.0_25', '', True), # TODO: set this to yes in configure - ('freetype', '2.5.3'), - ('gtest', '1.6.0'), # TODO: set this to yes in configure, after patching out all the includes for external/gtest - ('LibTIFF', '4.0.3'), - ('HDF5', '1.8.14', '-gpfs'), - ('libjpeg-turbo', '1.3.1'), - ('FFTW', '3.3.4'), -] - -buildininstalldir = True -unpack_options = '--strip-components=1' - -sanity_check_paths = { - 'files': ['bin/xmipp_mpi_run'], - 'dirs': [], -} - -preconfigopts = """export CXXFLAGS="$CXXFFLAGS -DMPICH_IGNORE_CXX_SEEK -I$EBROOTPYTHON/include/python2.7" && ln -s `which python` xmipp_python && mkdir lib && ln -s $EBROOTPYTHON/lib/python2.7 lib/python2.7 && cd external && tar xf scons.tgz && tar xf bilib.tgz && tar xf condor.tgz && tar xf alglib-3.8.0.cpp.tgz && cd - && mkdir bin && PATH=$PWD:$PATH xmipp_python external/scons/scons.py mode=configure -j 4 --config=force profile=no fast=yes warn=no release=yes gtest=no cuda=no debug=no matlab=no java=no LINKERFORPROGRAMS="$CXX" MPI_BINDIR="$EBROOTIMPI" JAVA_HOME="$JAVA_HOME" JAVAC=javac CC="$CC" CXXFLAGS="$CXXFLAGS" CXX="$CXX" MPI_CC="$MPICC" MPI_CXX="$MPICXX" MPI_INCLUDE="$MPI_INC_DIR" MPI_LIBDIR="$MPI_LIB_DIR" MPI_LINKERFORPROGRAMS="$MPICC" LIBPATH="$LD_LIBRARY_PATH" || """ - -prebuildopts = """export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$PWD/lib && PATH=$PWD:$PATH xmipp_python external/scons/scons.py mode=compile -j 16 || """ - -preinstallopts = "XMIPP_HOME=%(installdir)s PATH=$PWD:$PWD/bin:$PATH PYTHONPATH=$PYTHONPATH:$PWD/protocols:$PWD/libraries/bindings/python/:$EBROOTPYTHON/lib/python2.7/lib-dynload/ python setup.py install || " - -moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb b/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb new file mode 100644 index 0000000000..e40410e503 --- /dev/null +++ b/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb @@ -0,0 +1,25 @@ +name = 'Xmipp' +version = '3.1' + +homepage = 'http://xmipp.cnb.csic.es/' +description = "Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy." + +source_urls = ['http://xmipp.cnb.csic.es/Downloads/'] +sources = ['Xmipp-%(version)s-src.tar.gz'] + +toolchain = {'name': 'intel', 'version': '2015a'} + +patches = ['sqlite_imports.patch', 'library_imports.patch'] + +dependencies = [ + ('Python', '2.7.9'), + ('Java', '1.8.0_25', '', True), # TODO: set this to yes in configure + ('freetype', '2.5.3'), + ('gtest', '1.6.0'), # TODO: set this to yes in configure, after patching out all the includes for external/gtest + ('LibTIFF', '4.0.3'), + ('HDF5', '1.8.14', '-gpfs'), + ('libjpeg-turbo', '1.3.1'), + ('FFTW', '3.3.4'), +] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/Xmipp/library_imports.patch b/easybuild/easyconfigs/x/Xmipp/library_imports.patch new file mode 100644 index 0000000000..401f1eb286 --- /dev/null +++ b/easybuild/easyconfigs/x/Xmipp/library_imports.patch @@ -0,0 +1,100 @@ +diff -ru xmipp/libraries/data/metadata_sql.h xmipp_working/libraries/data/metadata_sql.h +--- xmipp/libraries/data/metadata_sql.h 2014-04-03 09:46:48.000000000 +0200 ++++ xmipp_working/libraries/data/metadata_sql.h 2015-03-12 17:31:49.701372176 +0100 +@@ -29,7 +29,7 @@ + #include + #include + #include "xmipp_strings.h" +-#include ++#include + #include "metadata_label.h" + #include + class MDSqlStaticInit; +diff -ru xmipp/libraries/data/rwHDF5.h xmipp_working/libraries/data/rwHDF5.h +--- xmipp/libraries/data/rwHDF5.h 2014-04-03 09:46:48.000000000 +0200 ++++ xmipp_working/libraries/data/rwHDF5.h 2015-03-12 17:32:16.060809000 +0100 +@@ -26,7 +26,7 @@ + #ifndef RWHDF5_H_ + #define RWHDF5_H_ + +-#include "../../external/hdf5-1.8.10/src/hdf5.h" ++#include "hdf5.h" + + + +diff -ru xmipp/libraries/data/rwIMAGIC.cpp xmipp_working/libraries/data/rwIMAGIC.cpp +--- xmipp/libraries/data/rwIMAGIC.cpp 2014-04-03 09:46:48.000000000 +0200 ++++ xmipp_working/libraries/data/rwIMAGIC.cpp 2015-03-12 17:35:53.292172326 +0100 +@@ -40,6 +40,8 @@ + */ + + #define IMAGICSIZE 1024 // Size of the IMAGIC header for each image ++#define SIZEOF_INT sizeof(int) ++ + + ///@defgroup Imagic Imagic File format + ///@ingroup ImageFormats +diff -ru xmipp/libraries/data/rwJPEG.cpp xmipp_working/libraries/data/rwJPEG.cpp +--- xmipp/libraries/data/rwJPEG.cpp 2014-04-03 09:46:48.000000000 +0200 ++++ xmipp_working/libraries/data/rwJPEG.cpp 2015-03-12 17:35:06.781738000 +0100 +@@ -24,7 +24,7 @@ + ***************************************************************************/ + + #include "xmipp_image_base.h" +-#include "../../external/jpeg-8c/jpeglib.h" ++#include "jpeglib.h" + + + //#include +diff -ru xmipp/libraries/data/xmipp_fftw.h xmipp_working/libraries/data/xmipp_fftw.h +--- xmipp/libraries/data/xmipp_fftw.h 2014-04-03 09:46:48.000000000 +0200 ++++ xmipp_working/libraries/data/xmipp_fftw.h 2015-03-12 17:32:35.751658248 +0100 +@@ -28,7 +28,7 @@ + #define __XmippFFTW_H + + #include +-#include "../../external/fftw-3.3.3/api/fftw3.h" ++#include "fftw3.h" + #include "multidim_array.h" + #include "multidim_array_generic.h" + #include "xmipp_fft.h" +diff -ru xmipp/libraries/data/xmipp_hdf5.h xmipp_working/libraries/data/xmipp_hdf5.h +--- xmipp/libraries/data/xmipp_hdf5.h 2014-04-03 09:46:48.000000000 +0200 ++++ xmipp_working/libraries/data/xmipp_hdf5.h 2015-03-12 17:32:50.922130000 +0100 +@@ -28,8 +28,8 @@ + + #include + #include +-#include "../../external/hdf5-1.8.10/src/hdf5.h" +-#include "../../external/hdf5-1.8.10/c++/src/H5Cpp.h" ++#include "hdf5.h" ++#include "H5Cpp.h" + #include "matrix1d.h" + + +diff -ru xmipp/libraries/data/xmipp_image_base.h xmipp_working/libraries/data/xmipp_image_base.h +--- xmipp/libraries/data/xmipp_image_base.h 2014-04-03 09:46:48.000000000 +0200 ++++ xmipp_working/libraries/data/xmipp_image_base.h 2015-03-12 17:34:39.112206978 +0100 +@@ -33,8 +33,8 @@ + #include "xmipp_datatype.h" + // + //// Includes for rwTIFF which cannot be inside it +-#include "../../external/tiff-3.9.4/libtiff/tiffio.h" +-#include "../../external/hdf5-1.8.10/src/hdf5.h" ++#include "tiffio.h" ++#include "hdf5.h" + + + /* Minimum size of a TIFF file to be mapped to a tempfile in case of mapping from +diff -ru xmipp/libraries/data/xmipp_program_sql.h xmipp_working/libraries/data/xmipp_program_sql.h +--- xmipp/libraries/data/xmipp_program_sql.h 2014-04-03 09:46:48.000000000 +0200 ++++ xmipp_working/libraries/data/xmipp_program_sql.h 2015-03-12 17:32:25.300863000 +0100 +@@ -28,7 +28,7 @@ + + #include + #include "xmipp_program.h" +-#include "external/sqlite-3.6.23/sqlite3.h" ++#include "sqlite3.h" + + typedef std::map DictDB; + diff --git a/easybuild/easyconfigs/x/Xmipp/sqlite_imports.patch b/easybuild/easyconfigs/x/Xmipp/sqlite_imports.patch new file mode 100644 index 0000000000..a24c6b5d9c --- /dev/null +++ b/easybuild/easyconfigs/x/Xmipp/sqlite_imports.patch @@ -0,0 +1,15 @@ +--- xmipp/external/sqliteExt/extension-functions.c 2014-04-03 09:46:46.000000000 +0200 ++++ xmipp_working/external/sqliteExt/extension-functions.c 2015-03-12 17:31:38.192960473 +0100 +@@ -121,10 +121,10 @@ + #define HAVE_TRIM 1 /* LMH 2007-03-25 if sqlite has trim functions */ + + #ifdef COMPILE_SQLITE_EXTENSIONS_AS_LOADABLE_MODULE +-#include "../sqlite-3.6.23/sqlite3ext.h" ++#include "sqlite3ext.h" + SQLITE_EXTENSION_INIT1 + #else +-#include "../sqlite-3.6.23/sqlite3.h" ++#include "sqlite3.h" + #endif + + #include -- GitLab From 438b9988976493fe4ece67ec50eb6a84207c9f95 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 17 Mar 2015 17:43:05 +0100 Subject: [PATCH 0815/1217] removed todo's --- easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb b/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb index e40410e503..04c3383b73 100644 --- a/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb +++ b/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb @@ -13,9 +13,7 @@ patches = ['sqlite_imports.patch', 'library_imports.patch'] dependencies = [ ('Python', '2.7.9'), - ('Java', '1.8.0_25', '', True), # TODO: set this to yes in configure ('freetype', '2.5.3'), - ('gtest', '1.6.0'), # TODO: set this to yes in configure, after patching out all the includes for external/gtest ('LibTIFF', '4.0.3'), ('HDF5', '1.8.14', '-gpfs'), ('libjpeg-turbo', '1.3.1'), -- GitLab From 7aeb38448263621964e6c40a2be53e466f0f183e Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 17 Mar 2015 17:45:53 +0100 Subject: [PATCH 0816/1217] added clarification about really needing sqlite in python --- easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb b/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb index 04c3383b73..1e915813e0 100644 --- a/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb +++ b/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb @@ -12,7 +12,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} patches = ['sqlite_imports.patch', 'library_imports.patch'] dependencies = [ - ('Python', '2.7.9'), + ('Python', '2.7.9'), # Make sure Python has a working SQlite in it, the install step creates a sqlite db. ('freetype', '2.5.3'), ('LibTIFF', '4.0.3'), ('HDF5', '1.8.14', '-gpfs'), -- GitLab From 38690c3318ac45d4db72037c5680223a3e202d63 Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Tue, 17 Mar 2015 17:10:43 +0100 Subject: [PATCH 0817/1217] Minor changes based on boegel's feedback. --- .../h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb | 3 ++- .../easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb | 4 ++-- .../h/Hadoop/Hadoop-TeraSort-on-local-filesystem.patch | 1 + 3 files changed, 5 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb index 1bcf4021ce..36e84805d1 100644 --- a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb +++ b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb @@ -11,6 +11,8 @@ toolchain = {'name': 'dummy', 'version': ''} sources = ['%s.tar.gz' % commit] source_urls = ['https://github.com/Seagate/hadoop-on-lustre2/archive'] +patches = ['Hadoop-TeraSort-on-local-filesystem.patch'] + java = 'Java' javaver = '1.7.0_76' @@ -21,7 +23,6 @@ builddependencies = [ ] dependencies = [(java, javaver)] -patches = [('Hadoop-TeraSort-on-local-filesystem.patch', 0)] build_native_libs = True diff --git a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb index 76cfd18862..67c1c26052 100644 --- a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb +++ b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb @@ -10,6 +10,8 @@ toolchain = {'name': 'dummy', 'version': ''} sources = ['%(namelower)s-%(version)s-src.tar.gz'] source_urls = ['http://archive.cloudera.com/cdh5/cdh/5/'] +patches = ['Hadoop-TeraSort-on-local-filesystem.patch'] + java = 'Java' javaver = '1.7.0_76' @@ -21,8 +23,6 @@ builddependencies = [ dependencies = [(java, javaver)] -patches = [('Hadoop-TeraSort-on-local-filesystem.patch', 0)] - build_native_libs = True moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/Hadoop/Hadoop-TeraSort-on-local-filesystem.patch b/easybuild/easyconfigs/h/Hadoop/Hadoop-TeraSort-on-local-filesystem.patch index afe953b518..6abba099f1 100644 --- a/easybuild/easyconfigs/h/Hadoop/Hadoop-TeraSort-on-local-filesystem.patch +++ b/easybuild/easyconfigs/h/Hadoop/Hadoop-TeraSort-on-local-filesystem.patch @@ -1,4 +1,5 @@ diff --git a/hadoop-mapreduce-project/hadoop-mapreduce-examples/src/main/java/org/apache/hadoop/examples/terasort/TeraSort.java b/hadoop-mapreduce-project/hadoop-mapreduce-examples/src/main/java/org/apache/hadoop/examples/terasort/TeraSort.java +Sourced from https://issues.apache.org/jira/browse/MAPREDUCE-5528 index 6022f6c..b913769 100644 --- hadoop-mapreduce-project/hadoop-mapreduce-examples/src/main/java/org/apache/hadoop/examples/terasort/TeraSort.java +++ hadoop-mapreduce-project/hadoop-mapreduce-examples/src/main/java/org/apache/hadoop/examples/terasort/TeraSort.java -- GitLab From 6b7985a62baf1d8a4deb7727f0e339b524546489 Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Wed, 18 Mar 2015 14:08:10 +0100 Subject: [PATCH 0818/1217] Hadoop has a buggy parallel build so only use 1 thread. We'll keep the easyblock in case hadoop gets fixed. --- .../easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb | 2 ++ easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb | 2 ++ 2 files changed, 4 insertions(+) diff --git a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb index 36e84805d1..13c43df595 100644 --- a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb +++ b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.4.0-seagate-722af1-native.eb @@ -26,4 +26,6 @@ dependencies = [(java, javaver)] build_native_libs = True +parallel = 1 + moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb index 67c1c26052..fea9291ff7 100644 --- a/easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb +++ b/easybuild/easyconfigs/h/Hadoop/Hadoop-2.5.0-cdh5.3.1-native.eb @@ -25,4 +25,6 @@ dependencies = [(java, javaver)] build_native_libs = True +parallel = 1 + moduleclass = 'tools' -- GitLab From 4abd1c883926fdf80547007aa003012380e74380 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 19 Mar 2015 09:19:32 +0100 Subject: [PATCH 0819/1217] dummy --- easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb | 1 + 1 file changed, 1 insertion(+) create mode 100644 easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb new file mode 100644 index 0000000000..421376db9e --- /dev/null +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb @@ -0,0 +1 @@ +dummy -- GitLab From c07de667b97f0930f0da71dbacb308374218b6ec Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 19 Mar 2015 09:55:10 +0100 Subject: [PATCH 0820/1217] HTSLib intel,foss 2015a --- .../h/HTSlib/HTSlib-1.2.1-foss-2015a.eb | 27 ++++++++++++++++++ .../h/HTSlib/HTSlib-1.2.1-intel-2015a.eb | 28 ++++++++++++++++++- 2 files changed, 54 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-foss-2015a.eb diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-foss-2015a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-foss-2015a.eb new file mode 100644 index 0000000000..000a05482b --- /dev/null +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-foss-2015a.eb @@ -0,0 +1,27 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'HTSlib' +version = '1.2.1' + +homepage = "http://www.htslib.org/" +description = """ A C library for reading/writing high-throughput sequencing data. + This package includes the utilities bgzip and tabix """ + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s/'] +sources = [SOURCELOWER_TAR_BZ2] + +dependencies = [('zlib', '1.2.8')] + +sanity_check_paths = { + 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.so"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb index 421376db9e..3963d9e539 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb @@ -1 +1,27 @@ -dummy +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'HTSlib' +version = '1.2.1' + +homepage = "http://www.htslib.org/" +description = """ A C library for reading/writing high-throughput sequencing data. + This package includes the utilities bgzip and tabix """ + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s/'] +sources = [SOURCELOWER_TAR_BZ2] + +dependencies = [('zlib', '1.2.8')] + +sanity_check_paths = { + 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.so"], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From 7f9c5cf2bcbd0f403f9cafb656d66310daca59b5 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 19 Mar 2015 09:58:57 +0100 Subject: [PATCH 0821/1217] dummy --- .../s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb | 1 + 1 file changed, 1 insertion(+) create mode 100644 easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb new file mode 100644 index 0000000000..421376db9e --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb @@ -0,0 +1 @@ +dummy -- GitLab From 3107751c06f9e89988e55c569724b2b6e2da5a5e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 19 Mar 2015 10:12:04 +0100 Subject: [PATCH 0822/1217] add easyconfigs for GATE v6.2 with intel/2015a + deps --- .../c/CLHEP/CLHEP-2.1.1.0-intel-2015a.eb | 20 +++++ .../c/CMake/CMake-2.8.4-intel-2015a.eb | 22 +++++ .../e/expat/expat-2.1.0-intel-2015a.eb | 15 ++++ .../g/GATE/GATE-6.2-intel-2015a.eb | 23 +++++ .../easyconfigs/g/GSL/GSL-1.15-intel-2015a.eb | 18 ++++ .../g/Geant4/Geant4-9.5.p01-intel-2015a.eb | 24 ++++++ .../libreadline-6.2-intel-2015a.eb | 27 ++++++ .../libxml2-2.8.0-intel-2015a-Python-2.7.3.eb | 27 ++++++ .../p/Python/Python-2.7.3-intel-2015a.eb | 85 +++++++++++++++++++ .../r/ROOT/ROOT-v5.34.01-intel-2015a.eb | 39 +++++++++ .../z/zlib/zlib-1.2.7-intel-2015a.eb | 22 +++++ 11 files changed, 322 insertions(+) create mode 100644 easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-intel-2015a.eb create mode 100644 easybuild/easyconfigs/c/CMake/CMake-2.8.4-intel-2015a.eb create mode 100644 easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2015a.eb create mode 100644 easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb create mode 100644 easybuild/easyconfigs/g/GSL/GSL-1.15-intel-2015a.eb create mode 100644 easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-6.2-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-intel-2015a-Python-2.7.3.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb create mode 100644 easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-intel-2015a.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.7-intel-2015a.eb diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-intel-2015a.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-intel-2015a.eb new file mode 100644 index 0000000000..fb3888c0b0 --- /dev/null +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.1.0-intel-2015a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'CLHEP' +version = '2.1.1.0' + +homepage = 'http://proj-clhep.web.cern.ch/proj-clhep/' +description = """The CLHEP project is intended to be a set of HEP-specific foundation and + utility classes such as random generators, physics vectors, geometry and linear algebra. + CLHEP is structured in a set of packages independent of any external package.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TGZ] +source_urls = ['http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/'] + +# CLHEP compiles with icc instead of icpc +configopts = 'CXX="$CC" CXXFLAGS="$CXXFLAGS -gcc"' + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.4-intel-2015a.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-intel-2015a.eb new file mode 100644 index 0000000000..c08d8d2cfd --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.4-intel-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '2.8.4' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2015a.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2015a.eb new file mode 100644 index 0000000000..0eb1188648 --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2015a.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'expat' +version = '2.1.0' + +homepage = 'http://expat.sourceforge.net/' +description = """Expat is an XML parser library written in C. It is a stream-oriented parser in which an application + registers handlers for things the parser might find in the XML document (like start tags)""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb b/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb new file mode 100644 index 0000000000..153cbd2179 --- /dev/null +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb @@ -0,0 +1,23 @@ +name = 'GATE' +version = '6.2' + +homepage = 'http://www.opengatecollaboration.org/' +description = """GATE is an advanced opensource software developed by the international OpenGATE collaboration and + dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography + (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [('%%(namelower)s_v%s_tar_gz_15843.gz' % '_'.join(version.split('.')), "tar xfvz %s")] +source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/'] + +patches = ['GATE-%(version)s_Makefile-prefix.patch'] + +dependencies = [ + ('Geant4', '9.5.p01'), + ('CLHEP', '2.1.1.0'), + ('ROOT', 'v5.34.01'), + ('CMake', '2.8.4'), +] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.15-intel-2015a.eb b/easybuild/easyconfigs/g/GSL/GSL-1.15-intel-2015a.eb new file mode 100644 index 0000000000..9cfba7ecd1 --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-1.15-intel-2015a.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '1.15' + +homepage = 'http://www.gnu.org/software/gsl/' +description = """The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. + The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-intel-2015a.eb b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-intel-2015a.eb new file mode 100644 index 0000000000..bfe0be4aaf --- /dev/null +++ b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-intel-2015a.eb @@ -0,0 +1,24 @@ +name = 'Geant4' +version = '9.5.p01' + +homepage = 'http://geant4.cern.ch/' +description = """Geant4 is a toolkit for the simulation of the passage of particles through matter. + Its areas of application include high energy, nuclear and accelerator physics, + as well as studies in medical and space science.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://geant4.cern.ch/support/source'] +sources = ['%(namelower)s.%(version)s.tar.gz'] + +dependencies = [ + ('expat', '2.1.0'), + ('CLHEP', '2.1.1.0'), +] + +builddependencies = [('CMake', '2.8.4')] + +configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" +configopts += "-DGEANT4_INSTALL_DATA=OFF" + +moduleclass = 'phys' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-intel-2015a.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-intel-2015a.eb new file mode 100644 index 0000000000..95bd6329fb --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-intel-2015a.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.2' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-intel-2015a-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-intel-2015a-Python-2.7.3.eb new file mode 100644 index 0000000000..1e588c6831 --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-intel-2015a-Python-2.7.3.eb @@ -0,0 +1,27 @@ +name = 'libxml2' +version = '2.8.0' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable + outside of the Gnome platform).""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +configopts = 'CC="$CC" CXX="$CXX" --with-pic' + +pythonver = '2.7.3' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % ('Python', pythonver) + +dependencies = [ + ('zlib', '1.2.7'), + ('Python', pythonver), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb new file mode 100644 index 0000000000..14b4ce86fc --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb @@ -0,0 +1,85 @@ +name = 'Python' +version = '2.7.3' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.6.1' +scipyversion = '0.10.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +patches = ['python_libffi_int128_icc.patch'] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.7'), + ('libreadline', '6.2'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# order is important! +exts_list = [ + ('setuptools', '0.6c11', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '1.1', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.1.2', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': ['numpy-%s_distutils_multiple-lib-dirs.patch' % numpyversion], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('mpi4py', '1.3', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.9.1', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.17.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('dateutil', '2.1', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '0.9.1', { + 'source_urls': ['https://deap.googlecode.com/files/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '1.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('paramiko', '1.12.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-intel-2015a.eb b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-intel-2015a.eb new file mode 100644 index 0000000000..bdb5568e8a --- /dev/null +++ b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-intel-2015a.eb @@ -0,0 +1,39 @@ +name = 'ROOT' +version = 'v5.34.01' + +homepage = 'http://root.cern.ch/drupal/' +description = """The ROOT system provides a set of OO frameworks with all the functionality + needed to handle and analyze large amounts of data in a very efficient way.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = ['%s_%s.source.tar.gz' % (name.lower(), version)] +source_urls = ['ftp://root.cern.ch/root/'] +patches = [ + 'configure_FftwFromMkl_28.patch', + 'icc_ifort_v12.patch' + ] + +python = 'Python' +pyver = '2.7.3' + +dependencies = [ + ('GSL', '1.15'), + ('libxml2', '2.8.0', '-%s-%s' % (python, pyver)), + (python, pyver), + ] + +# architecture +arch = 'linuxx8664icc' + +# disable features +configopts = ' --disable-xft --disable-x11 --disable-xrootd --disable-mysql' +# enable features +configopts += ' --enable-unuran --enable-table --enable-explicitlink --enable-minuit2 --enable-roofit' +configopts += ' --with-gsl-incdir=$EBROOTGSL/include/gsl --with-gsl-libdir=$EBROOTGSL/lib' +configopts += ' --with-fftw3-incdir=$MKLROOT/mkl/include/fftw --with-fftw3-libdir=$MKLROOT/mkl/lib/intel64' +configopts += ' --with-xml-incdir=$EBROOTLIBXML2/include/libxml2/libxml --with-xml-libdir=$EBROOTLIBXML2/lib' +configopts += ' --with-python-libdir=$EBROOTPYTHON/lib' + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-intel-2015a.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-intel-2015a.eb new file mode 100644 index 0000000000..d4d69bb5d6 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-intel-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.7' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From f1c1df10bc840937641f9369bb3bd32409c91ea4 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 19 Mar 2015 10:48:59 +0100 Subject: [PATCH 0823/1217] dummy2 --- .../SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb | 35 +++++- .../SAMtools-1.2_extHTSlib_Makefile.patch | 108 ++++++++++++++++++ 2 files changed, 142 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/s/SAMtools/SAMtools-1.2_extHTSlib_Makefile.patch diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb index 421376db9e..d20cd89e7b 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb @@ -1 +1,34 @@ -dummy +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +## + +name = 'SAMtools' +version = '1.2' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] + +#patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch'] + +dependencies = [ + ('HTSlib', '1.2.1'), + ('ncurses', '5.9'), + ('zlib', '1.2.8'), +] + +parallel = 1 + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2_extHTSlib_Makefile.patch b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2_extHTSlib_Makefile.patch new file mode 100644 index 0000000000..01033c7a28 --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2_extHTSlib_Makefile.patch @@ -0,0 +1,108 @@ +--- samtools-1.2/Makefile.orig 2015-02-03 17:27:34.000000000 +0100 ++++ samtools-1.2/Makefile 2015-03-19 10:27:14.487237690 +0100 +@@ -36,9 +36,9 @@ + cut_target.o phase.o bam2depth.o padding.o bedcov.o bamshuf.o \ + faidx.o stats.o stats_isize.o bam_flags.o bam_split.o \ + bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o +-INCLUDES= -I. -I$(HTSDIR) +-LIBCURSES= -lcurses # -lXCurses +- ++INCLUDES= -I$(EBROOTNCURSES)/include -I$(EBROOTZLIB)/include -I. -I$(EBROOTHTSLIB)/include ++LIBCURSES= -L$(EBROOTNCURSES)/lib -lcurses # -lXCurses ++ZLIB= -L$(EBROOTZLIB)/lib -lz + prefix = /usr/local + exec_prefix = $(prefix) + bindir = $(exec_prefix)/bin +@@ -82,10 +82,10 @@ + + + # Adjust $(HTSDIR) to point to your top-level htslib directory +-HTSDIR = htslib-1.2.1 +-include $(HTSDIR)/htslib.mk +-HTSLIB = $(HTSDIR)/libhts.a +-BGZIP = $(HTSDIR)/bgzip ++HTSDIR = $(EBROOTHTSLIB)/include ++#include $(EBROOTHTSLIB)/htslib.mk ++HTSLIB = $(EBROOTHTSLIB)/lib/libhts.a ++BGZIP = $(EBROOTHTSLIB)/bin/bgzip + + + PACKAGE_VERSION = 1.2 +@@ -122,7 +122,7 @@ + $(AR) -csru $@ $(LOBJS) + + samtools: $(AOBJS) libbam.a $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ $(AOBJS) libbam.a $(HTSLIB) $(LDLIBS) $(LIBCURSES) -lm -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ $(AOBJS) libbam.a $(HTSLIB) $(LDLIBS) $(LIBCURSES) -lm $(ZLIB) + + bam_h = bam.h $(htslib_bgzf_h) $(htslib_sam_h) + bam2bcf_h = bam2bcf.h $(htslib_vcf_h) errmod.h +@@ -192,31 +192,31 @@ + + + test/merge/test_bam_translate: test/merge/test_bam_translate.o test/test.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_bam_translate.o test/test.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_bam_translate.o test/test.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/merge/test_pretty_header: test/merge/test_pretty_header.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_pretty_header.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_pretty_header.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/merge/test_rtrans_build: test/merge/test_rtrans_build.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_rtrans_build.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_rtrans_build.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/merge/test_trans_tbl_init: test/merge/test_trans_tbl_init.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_trans_tbl_init.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/merge/test_trans_tbl_init.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/split/test_count_rg: test/split/test_count_rg.o test/test.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_count_rg.o test/test.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_count_rg.o test/test.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/split/test_expand_format_string: test/split/test_expand_format_string.o test/test.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_expand_format_string.o test/test.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_expand_format_string.o test/test.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/split/test_filter_header_rg: test/split/test_filter_header_rg.o test/test.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_filter_header_rg.o test/test.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_filter_header_rg.o test/test.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/split/test_parse_args: test/split/test_parse_args.o test/test.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_parse_args.o test/test.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/split/test_parse_args.o test/test.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test/vcf-miniview: test/vcf-miniview.o $(HTSLIB) +- $(CC) -pthread $(LDFLAGS) -o $@ test/vcf-miniview.o $(HTSLIB) $(LDLIBS) -lz ++ $(CC) -pthread $(LDFLAGS) -o $@ test/vcf-miniview.o $(HTSLIB) $(LDLIBS) $(ZLIB) + + test_test_h = test/test.h $(htslib_sam_h) + +@@ -235,22 +235,22 @@ + # misc programs + + misc/ace2sam: misc/ace2sam.o +- $(CC) $(LDFLAGS) -o $@ misc/ace2sam.o $(LDLIBS) -lz ++ $(CC) $(LDFLAGS) -o $@ misc/ace2sam.o $(LDLIBS) $(ZLIB) + + misc/maq2sam-short: misc/maq2sam-short.o +- $(CC) $(LDFLAGS) -o $@ misc/maq2sam-short.o $(LDLIBS) -lz ++ $(CC) $(LDFLAGS) -o $@ misc/maq2sam-short.o $(LDLIBS) $(ZLIB) + + misc/maq2sam-long: misc/maq2sam-long.o +- $(CC) $(LDFLAGS) -o $@ misc/maq2sam-long.o $(LDLIBS) -lz ++ $(CC) $(LDFLAGS) -o $@ misc/maq2sam-long.o $(LDLIBS) $(ZLIB) + + misc/md5fa: misc/md5fa.o misc/md5.o +- $(CC) $(LDFLAGS) -o $@ misc/md5fa.o misc/md5.o $(LDLIBS) -lz ++ $(CC) $(LDFLAGS) -o $@ misc/md5fa.o misc/md5.o $(LDLIBS) $(ZLIB) + + misc/md5sum-lite: misc/md5sum-lite.o + $(CC) $(LDFLAGS) -o $@ misc/md5sum-lite.o $(LDLIBS) + + misc/wgsim: misc/wgsim.o +- $(CC) $(LDFLAGS) -o $@ misc/wgsim.o $(LDLIBS) -lm -lz ++ $(CC) $(LDFLAGS) -o $@ misc/wgsim.o $(LDLIBS) -lm $(ZLIB) + + misc/ace2sam.o: misc/ace2sam.c $(HTSDIR)/htslib/kstring.h $(HTSDIR)/htslib/kseq.h + misc/md5.o: misc/md5.c misc/md5.h -- GitLab From c04ba25ac1e8f4522b7c3492786d257862268ab1 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 19 Mar 2015 11:56:38 +0100 Subject: [PATCH 0824/1217] remove unrequired patch from Python 2.7.3 intel/2015a easyconfig --- easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb index 14b4ce86fc..c07420a815 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb @@ -13,8 +13,6 @@ scipyversion = '0.10.1' source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] sources = [SOURCE_TGZ] -patches = ['python_libffi_int128_icc.patch'] - # python needs bzip2 to build the bz2 package dependencies = [ ('bzip2', '1.0.6'), -- GitLab From 181669e94ca052aea42ebdcf3647e536f21caddb Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 19 Mar 2015 12:04:19 +0100 Subject: [PATCH 0825/1217] bump zlib dep to 1.2.8 in deps of Python/libxml intel/2015a easyconfigs --- .../l/libxml2/libxml2-2.8.0-intel-2015a-Python-2.7.3.eb | 2 +- easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-intel-2015a-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-intel-2015a-Python-2.7.3.eb index 1e588c6831..833381d4b2 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-intel-2015a-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-intel-2015a-Python-2.7.3.eb @@ -20,7 +20,7 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % ('Python', pythonver) dependencies = [ - ('zlib', '1.2.7'), + ('zlib', '1.2.8'), ('Python', pythonver), ] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb index c07420a815..58d509004d 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb @@ -16,7 +16,7 @@ sources = [SOURCE_TGZ] # python needs bzip2 to build the bz2 package dependencies = [ ('bzip2', '1.0.6'), - ('zlib', '1.2.7'), + ('zlib', '1.2.8'), ('libreadline', '6.2'), ('ncurses', '5.9'), # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons -- GitLab From c3492ddf23789c15bef5511e4b7b58f7e85e5921 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 19 Mar 2015 12:21:21 +0100 Subject: [PATCH 0826/1217] CMake is a build dep --- easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/g/GATE/GATE-6.2-goalf-1.1.0-no-OFED.eb | 2 +- easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/g/GATE/GATE-6.2-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb | 2 +- 5 files changed, 5 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb index 1b62309c54..f6983e6ed6 100644 --- a/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/GATE/GATE-6.1-ictce-4.0.6.eb @@ -15,8 +15,8 @@ dependencies = [ ('Geant4', '9.4.p02'), ('CLHEP', '2.1.1.0'), ('ROOT', 'v5.34.01'), - ('CMake', '2.8.4'), ] +builddependencies = [('CMake', '2.8.4')] parallel = 1 diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GATE/GATE-6.2-goalf-1.1.0-no-OFED.eb index b3ec8c73df..8cd12c59aa 100644 --- a/easybuild/easyconfigs/g/GATE/GATE-6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2-goalf-1.1.0-no-OFED.eb @@ -17,7 +17,7 @@ dependencies = [ ('Geant4', '9.5.p01'), ('CLHEP', '2.1.1.0'), ('ROOT', 'v5.34.01'), - ('CMake', '2.8.4'), ] +builddependencies = [('CMake', '2.8.4')] moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb index f0862bba48..3bac12bc2c 100644 --- a/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2-goolf-1.4.10.eb @@ -20,7 +20,7 @@ dependencies = [ ('Geant4', '9.5.p01'), ('CLHEP', '2.1.1.0'), ('ROOT', 'v5.34.01'), - ('CMake', '2.8.4'), ] +builddependencies = [('CMake', '2.8.4')] moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GATE/GATE-6.2-ictce-4.0.6.eb index 3fe22c082c..cf9f93f198 100644 --- a/easybuild/easyconfigs/g/GATE/GATE-6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2-ictce-4.0.6.eb @@ -17,7 +17,7 @@ dependencies = [ ('Geant4', '9.5.p01'), ('CLHEP', '2.1.1.0'), ('ROOT', 'v5.34.01'), - ('CMake', '2.8.4'), ] +builddependencies = [('CMake', '2.8.4')] moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb b/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb index 153cbd2179..dd8ac9566b 100644 --- a/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb @@ -17,7 +17,7 @@ dependencies = [ ('Geant4', '9.5.p01'), ('CLHEP', '2.1.1.0'), ('ROOT', 'v5.34.01'), - ('CMake', '2.8.4'), ] +builddependencies = [('CMake', '2.8.4')] moduleclass = 'cae' -- GitLab From fbb18c453468b923d421838b321b9121bd4c5b0a Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Thu, 19 Mar 2015 14:17:23 +0100 Subject: [PATCH 0827/1217] SAM and BCFtools with intel and foss 2015a --- .../BCFtools-1.2-HTSlib-1.2.1-foss-2015a.eb | 36 ++++++++++ .../BCFtools-1.2-HTSlib-1.2.1-intel-2015a.eb | 36 ++++++++++ .../BCFtools-1.2_extHTSlib_Makefile.patch | 65 +++++++++++++++++++ .../SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb | 7 +- .../SAMtools-1.2-HTSlib-1.2.1-intel-2015a.eb | 33 ++++++++++ .../SAMtools-1.2_extHTSlib_Makefile.patch | 23 +++++-- 6 files changed, 189 insertions(+), 11 deletions(-) create mode 100644 easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-HTSlib-1.2.1-foss-2015a.eb create mode 100644 easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-HTSlib-1.2.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/b/BCFtools/BCFtools-1.2_extHTSlib_Makefile.patch create mode 100644 easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-intel-2015a.eb diff --git a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-HTSlib-1.2.1-foss-2015a.eb b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-HTSlib-1.2.1-foss-2015a.eb new file mode 100644 index 0000000000..71c37a2d63 --- /dev/null +++ b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-HTSlib-1.2.1-foss-2015a.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'BCFtools' +version = '1.2' + +homepage = 'http://www.htslib.org/' +description = """Samtools is a suite of programs for interacting with high-throughput sequencing data. + BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] + +patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch'] + +dependencies = [('HTSlib', '1.2.1')] + +parallel = 1 + +skipsteps = ['configure'] + +installopts = ' prefix=%(installdir)s' + +postinstallcmds = [ + 'mkdir -p %(installdir)s/lib/plugins', + 'cp plugins/*.so %(installdir)s/lib/plugins/.', +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['bcftools', 'plot-vcfstats', 'vcfutils.pl']], + 'dirs': ['lib/plugins'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-HTSlib-1.2.1-intel-2015a.eb b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-HTSlib-1.2.1-intel-2015a.eb new file mode 100644 index 0000000000..197f2b1a9b --- /dev/null +++ b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-HTSlib-1.2.1-intel-2015a.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'BCFtools' +version = '1.2' + +homepage = 'http://www.htslib.org/' +description = """Samtools is a suite of programs for interacting with high-throughput sequencing data. + BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] + +patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch'] + +dependencies = [('HTSlib', '1.2.1')] + +parallel = 1 + +skipsteps = ['configure'] + +installopts = ' prefix=%(installdir)s' + +postinstallcmds = [ + 'mkdir -p %(installdir)s/lib/plugins', + 'cp plugins/*.so %(installdir)s/lib/plugins/.', +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['bcftools', 'plot-vcfstats', 'vcfutils.pl']], + 'dirs': ['lib/plugins'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2_extHTSlib_Makefile.patch b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2_extHTSlib_Makefile.patch new file mode 100644 index 0000000000..a6df8a51d3 --- /dev/null +++ b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2_extHTSlib_Makefile.patch @@ -0,0 +1,65 @@ +# patch needed to use external HTSlib and ZLIB +# B. Hajgato March 19 2015 +--- bcftools-1.2/Makefile.orig 2015-02-03 17:27:19.000000000 +0100 ++++ bcftools-1.2/Makefile 2015-03-19 13:24:18.595228622 +0100 +@@ -29,14 +29,11 @@ + all: $(PROG) $(TEST_PROG) + + # Adjust $(HTSDIR) to point to your top-level htslib directory +-HTSDIR = htslib-1.2.1 +-include $(HTSDIR)/htslib.mk +-HTSLIB = $(HTSDIR)/libhts.a +-BGZIP = $(HTSDIR)/bgzip +-TABIX = $(HTSDIR)/tabix ++HTSDIR = $(EBROOTHTSLIB)/include ++HTSLIB = $(EBROOTHTSLIB)/lib/libhts.a ++BGZIP = $(EBROOTHTSLIB)/bin/bgzip ++TABIX = $(EBROOTHTSLIB)/bin/tabix + +-CC = gcc +-CFLAGS = -g -Wall -Wc++-compat -O2 + DFLAGS = + OBJS = main.o vcfindex.o tabix.o \ + vcfstats.o vcfisec.o vcfmerge.o vcfquery.o vcffilter.o filter.o vcfsom.o \ +@@ -45,6 +42,7 @@ + vcfcnv.o HMM.o vcfplugin.o consensus.o ploidy.o version.o \ + ccall.o em.o prob1.o kmin.o # the original samtools calling + INCLUDES = -I. -I$(HTSDIR) ++ZLIB= -L$(EBROOTZLIB)/lib -lz + + # The polysomy command is not compiled by default because it brings dependency + # on libgsl. The command can be compiled wth `make USE_GPL=1`. See the INSTALL +@@ -102,8 +100,8 @@ + PLUGINS = $(PLUGINC:.c=.so) + PLUGINM = $(PLUGINC:.c=.mk) + +-%.so: %.c version.h version.c $(HTSDIR)/libhts.so +- $(CC) $(CFLAGS) $(INCLUDES) -fPIC -shared -o $@ version.c $< -L$(HTSDIR) -lhts ++%.so: %.c version.h version.c $(EBROOTHTSLIB)/lib/libhts.so ++ $(CC) $(CFLAGS) $(INCLUDES) -fPIC -shared -o $@ version.c $< -L$(EBROOTHTSLIB)/lib -lhts + + -include $(PLUGINM) + +@@ -159,7 +157,7 @@ + $(CC) $(CFLAGS) -o $@ -lm -ldl $< + + bcftools: $(HTSLIB) $(OBJS) +- $(CC) $(CFLAGS) -o $@ $(OBJS) $(HTSLIB) -lpthread -lz -lm -ldl $(LDLIBS) ++ $(CC) $(CFLAGS) -o $@ $(OBJS) $(HTSLIB) -lpthread $(ZLIB) -lm -ldl $(LDLIBS) + + doc/bcftools.1: doc/bcftools.txt + cd doc && a2x -adate="$(DOC_DATE)" -aversion=$(DOC_VERSION) --doctype manpage --format manpage bcftools.txt +--- bcftools-1.2/plugins/fixploidy.mk.orig 2014-10-09 11:01:22.000000000 +0200 ++++ bcftools-1.2/plugins/fixploidy.mk 2015-03-19 13:30:48.125228201 +0100 +@@ -1,2 +1,2 @@ +-plugins/fixploidy.so: plugins/fixploidy.c version.h version.c ploidy.h ploidy.c $(HTSDIR)/libhts.so +- $(CC) $(CFLAGS) $(INCLUDES) -fPIC -shared -o $@ ploidy.c version.c $< -L$(HTSDIR) -lhts ++plugins/fixploidy.so: plugins/fixploidy.c version.h version.c ploidy.h ploidy.c $(EBROOTHTSLIB)/lib/libhts.so ++ $(CC) $(CFLAGS) $(INCLUDES) -fPIC -shared -o $@ ploidy.c version.c $< -L$(EBROOTHTSLIB)/lib -lhts +--- bcftools-1.2/plugins/vcf2sex.mk.orig 2014-10-09 11:01:22.000000000 +0200 ++++ bcftools-1.2/plugins/vcf2sex.mk 2015-03-19 13:31:11.227228307 +0100 +@@ -1,2 +1,2 @@ +-plugins/vcf2sex.so: plugins/vcf2sex.c version.h version.c ploidy.h ploidy.c $(HTSDIR)/libhts.so +- $(CC) $(CFLAGS) $(INCLUDES) -fPIC -shared -o $@ ploidy.c version.c $< -L$(HTSDIR) -lhts ++plugins/vcf2sex.so: plugins/vcf2sex.c version.h version.c ploidy.h ploidy.c $(EBROOTHTSLIB)/lib/libhts.so ++ $(CC) $(CFLAGS) $(INCLUDES) -fPIC -shared -o $@ ploidy.c version.c $< -L$(EBROOTHTSLIB)/lib -lhts diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb index d20cd89e7b..7236af59bb 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb @@ -12,8 +12,8 @@ name = 'SAMtools' version = '1.2' homepage = 'http://www.htslib.org/' -description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, - including sorting, merging, indexing and generating alignments in a per-position format.""" +description = """Samtools is a suite of programs for interacting with high-throughput sequencing data. + SAMtools - Reading/writing/editing/indexing/viewing SAM/BAM/CRAM format""" toolchain = {'name': 'foss', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True} @@ -21,12 +21,11 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_BZ2] source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] -#patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch'] +patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch'] dependencies = [ ('HTSlib', '1.2.1'), ('ncurses', '5.9'), - ('zlib', '1.2.8'), ] parallel = 1 diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-intel-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-intel-2015a.eb new file mode 100644 index 0000000000..556ed34148 --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-intel-2015a.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +## + +name = 'SAMtools' +version = '1.2' + +homepage = 'http://www.htslib.org/' +description = """Samtools is a suite of programs for interacting with high-throughput sequencing data. + SAMtools - Reading/writing/editing/indexing/viewing SAM/BAM/CRAM format""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] + +patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch'] + +dependencies = [ + ('HTSlib', '1.2.1'), + ('ncurses', '5.9'), +] + +parallel = 1 + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2_extHTSlib_Makefile.patch b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2_extHTSlib_Makefile.patch index 01033c7a28..47bf7ec973 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2_extHTSlib_Makefile.patch +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2_extHTSlib_Makefile.patch @@ -1,6 +1,16 @@ --- samtools-1.2/Makefile.orig 2015-02-03 17:27:34.000000000 +0100 -+++ samtools-1.2/Makefile 2015-03-19 10:27:14.487237690 +0100 -@@ -36,9 +36,9 @@ ++++ samtools-1.2/Makefile 2015-03-19 11:19:38.289234982 +0100 +@@ -21,9 +21,7 @@ + # FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER + # DEALINGS IN THE SOFTWARE. + +-CC = gcc + CPPFLAGS = $(DFLAGS) $(INCLUDES) +-CFLAGS = -g -Wall -O2 + LDFLAGS = + LDLIBS = + DFLAGS= -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1 +@@ -36,9 +34,9 @@ cut_target.o phase.o bam2depth.o padding.o bedcov.o bamshuf.o \ faidx.o stats.o stats_isize.o bam_flags.o bam_split.o \ bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o @@ -13,7 +23,7 @@ prefix = /usr/local exec_prefix = $(prefix) bindir = $(exec_prefix)/bin -@@ -82,10 +82,10 @@ +@@ -82,10 +80,9 @@ # Adjust $(HTSDIR) to point to your top-level htslib directory @@ -22,13 +32,12 @@ -HTSLIB = $(HTSDIR)/libhts.a -BGZIP = $(HTSDIR)/bgzip +HTSDIR = $(EBROOTHTSLIB)/include -+#include $(EBROOTHTSLIB)/htslib.mk +HTSLIB = $(EBROOTHTSLIB)/lib/libhts.a +BGZIP = $(EBROOTHTSLIB)/bin/bgzip PACKAGE_VERSION = 1.2 -@@ -122,7 +122,7 @@ +@@ -122,7 +119,7 @@ $(AR) -csru $@ $(LOBJS) samtools: $(AOBJS) libbam.a $(HTSLIB) @@ -37,7 +46,7 @@ bam_h = bam.h $(htslib_bgzf_h) $(htslib_sam_h) bam2bcf_h = bam2bcf.h $(htslib_vcf_h) errmod.h -@@ -192,31 +192,31 @@ +@@ -192,31 +189,31 @@ test/merge/test_bam_translate: test/merge/test_bam_translate.o test/test.o $(HTSLIB) @@ -78,7 +87,7 @@ test_test_h = test/test.h $(htslib_sam_h) -@@ -235,22 +235,22 @@ +@@ -235,22 +232,22 @@ # misc programs misc/ace2sam: misc/ace2sam.o -- GitLab From 2b2e7cb954793dea43c0023f43bb005048700fa7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 19 Mar 2015 14:19:33 +0100 Subject: [PATCH 0828/1217] add easyconfig for Ray v2.3.1 --- .../r/Ray/Ray-2.3.1-intel-2015a.eb | 30 +++++++++++++++++++ 1 file changed, 30 insertions(+) create mode 100644 easybuild/easyconfigs/r/Ray/Ray-2.3.1-intel-2015a.eb diff --git a/easybuild/easyconfigs/r/Ray/Ray-2.3.1-intel-2015a.eb b/easybuild/easyconfigs/r/Ray/Ray-2.3.1-intel-2015a.eb new file mode 100644 index 0000000000..8b7237fffb --- /dev/null +++ b/easybuild/easyconfigs/r/Ray/Ray-2.3.1-intel-2015a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'Ray' +version = '2.3.1' + +homepage = 'http://sourceforge.net/projects/denovoassembler/' +description = """Ray -- Parallel genome assemblies for parallel DNA sequencing.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'usempi': True} + +sources = [SOURCE_TAR_BZ2] +source_urls = ['http://download.sourceforge.net/denovoassembler/'] + +dependencies = [ + ('zlib', '1.2.8'), + ('bzip2', '1.0.6'), +] + +skipsteps = ['configure'] +buildopts = 'PREFIX=%(installdir)s MPI_IO=y CXXFLAGS="$CXXFLAGS" HAVE_LIBZ=y HAVE_LIBBZ2=y' + +modextrapaths = {'PATH': ['']} + +sanity_check_paths = { + 'files': ['Ray'], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From 7767b36d9825c926fc4e3a5192dc083135073a9f Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Fri, 20 Mar 2015 12:19:08 +0100 Subject: [PATCH 0829/1217] zlib added, filenames corrected --- ...ib-1.2.1-intel-2015a.eb => BCFtools-1.2-intel-2015a.eb} | 5 ++++- ...2-HTSlib-1.2.1-foss-2015a.eb => BCFtools-foss-2015a.eb} | 5 ++++- .../s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb | 7 ++++++- .../s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-intel-2015a.eb | 7 ++++++- 4 files changed, 20 insertions(+), 4 deletions(-) rename easybuild/easyconfigs/b/BCFtools/{BCFtools-1.2-HTSlib-1.2.1-intel-2015a.eb => BCFtools-1.2-intel-2015a.eb} (93%) rename easybuild/easyconfigs/b/BCFtools/{BCFtools-1.2-HTSlib-1.2.1-foss-2015a.eb => BCFtools-foss-2015a.eb} (93%) diff --git a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-HTSlib-1.2.1-intel-2015a.eb b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-intel-2015a.eb similarity index 93% rename from easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-HTSlib-1.2.1-intel-2015a.eb rename to easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-intel-2015a.eb index 197f2b1a9b..156cebe11f 100644 --- a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-HTSlib-1.2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-intel-2015a.eb @@ -15,7 +15,10 @@ source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(ve patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch'] -dependencies = [('HTSlib', '1.2.1')] +dependencies = [ + ('HTSlib', '1.2.1'), + ('zlib','1.2.8', +] parallel = 1 diff --git a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-HTSlib-1.2.1-foss-2015a.eb b/easybuild/easyconfigs/b/BCFtools/BCFtools-foss-2015a.eb similarity index 93% rename from easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-HTSlib-1.2.1-foss-2015a.eb rename to easybuild/easyconfigs/b/BCFtools/BCFtools-foss-2015a.eb index 71c37a2d63..7aa9dcdd5b 100644 --- a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-HTSlib-1.2.1-foss-2015a.eb +++ b/easybuild/easyconfigs/b/BCFtools/BCFtools-foss-2015a.eb @@ -15,7 +15,10 @@ source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(ve patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch'] -dependencies = [('HTSlib', '1.2.1')] +dependencies = [ + ('HTSlib', '1.2.1'), + ('zlib', '1.2.8'), +] parallel = 1 diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb index 7236af59bb..c7743a27f3 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb @@ -23,9 +23,14 @@ source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(ve patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch'] +htslib = 'HTSlib' +htsver = '1.2.1' +versionsuffix = '-%s-%s' % (htslib, htsver) + dependencies = [ - ('HTSlib', '1.2.1'), + (htslib, htsver), ('ncurses', '5.9'), + ('zlib', '1.2.8'), ] parallel = 1 diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-intel-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-intel-2015a.eb index 556ed34148..ccd0092201 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-intel-2015a.eb @@ -23,9 +23,14 @@ source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(ve patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch'] +htslib = 'HTSlib' +htsver = '1.2.1' +versionsuffix = '-%s-%s' % (htslib, htsver) + dependencies = [ - ('HTSlib', '1.2.1'), + (htslib, htsver), ('ncurses', '5.9'), + ('zlib', '1.2.8'), ] parallel = 1 -- GitLab From 00d81f1a63eefb7f458cb6b4b3ce33ccc5e9ab3b Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Fri, 20 Mar 2015 12:47:34 +0100 Subject: [PATCH 0830/1217] Typos corrected --- .../{BCFtools-foss-2015a.eb => BCFtools-1.2-foss-2015a.eb} | 0 easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-intel-2015a.eb | 2 +- 2 files changed, 1 insertion(+), 1 deletion(-) rename easybuild/easyconfigs/b/BCFtools/{BCFtools-foss-2015a.eb => BCFtools-1.2-foss-2015a.eb} (100%) diff --git a/easybuild/easyconfigs/b/BCFtools/BCFtools-foss-2015a.eb b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-foss-2015a.eb similarity index 100% rename from easybuild/easyconfigs/b/BCFtools/BCFtools-foss-2015a.eb rename to easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-foss-2015a.eb diff --git a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-intel-2015a.eb b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-intel-2015a.eb index 156cebe11f..c997c54557 100644 --- a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-intel-2015a.eb +++ b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-intel-2015a.eb @@ -17,7 +17,7 @@ patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch'] dependencies = [ ('HTSlib', '1.2.1'), - ('zlib','1.2.8', + ('zlib', '1.2.8'), ] parallel = 1 -- GitLab From 55d5d7ddc20b0838e11310490fa287701bcc0b2c Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Fri, 20 Mar 2015 13:07:27 +0100 Subject: [PATCH 0831/1217] Filename corrected --- ....2.1-foss-2015a.eb => SAMtools-1.2-foss-2015a-HTSlib-1.2.1.eb} | 0 ....1-intel-2015a.eb => SAMtools-1.2-intel-2015a-HTSlib-1.2.1.eb} | 0 2 files changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/s/SAMtools/{SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb => SAMtools-1.2-foss-2015a-HTSlib-1.2.1.eb} (100%) rename easybuild/easyconfigs/s/SAMtools/{SAMtools-1.2-HTSlib-1.2.1-intel-2015a.eb => SAMtools-1.2-intel-2015a-HTSlib-1.2.1.eb} (100%) diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a-HTSlib-1.2.1.eb similarity index 100% rename from easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-foss-2015a.eb rename to easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a-HTSlib-1.2.1.eb diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-intel-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015a-HTSlib-1.2.1.eb similarity index 100% rename from easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-HTSlib-1.2.1-intel-2015a.eb rename to easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015a-HTSlib-1.2.1.eb -- GitLab From 4c1dc0307c9dd925474c536e5a0f07ba0437cde0 Mon Sep 17 00:00:00 2001 From: pescobar Date: Sat, 21 Mar 2015 15:06:41 +0100 Subject: [PATCH 0832/1217] added checksum. switch to buildopts. fixed error --- .../easyconfigs/m/Minimac/Minimac-2013.7.17-goolf-1.4.10.eb | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/m/Minimac/Minimac-2013.7.17-goolf-1.4.10.eb b/easybuild/easyconfigs/m/Minimac/Minimac-2013.7.17-goolf-1.4.10.eb index 6d59aab26d..ab6ce7f05d 100644 --- a/easybuild/easyconfigs/m/Minimac/Minimac-2013.7.17-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/Minimac/Minimac-2013.7.17-goolf-1.4.10.eb @@ -23,14 +23,14 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} # in their website if the version number and date is correct source_urls = ['http://www.sph.umich.edu/csg/cfuchsb/'] sources = ['%(namelower)s.src.tgz'] +checksums = [('md5', 'a8011a4cf8a9be8add07815e9e42246d')] # firt move to folder libStatGen to run make -# then move to foler minimac to run make -premakeopts = ["cd libStatGen && ", "cd minimac && "] +prebuildopts = ["cd libStatGen && "] # in libStatGen folder run just "make" # in minimac folder run "make opt && make openmp" -makeopts = ["", " opt && make openmp"] +buildopts = [" && cd ../minimac && make opt && make openmp"] # parallel build fails parallel = 1 -- GitLab From 018a175df2bc5515627e30dd13175aec103a757b Mon Sep 17 00:00:00 2001 From: "tmwsiy2012@gmail.com" Date: Sat, 21 Mar 2015 22:49:34 -0400 Subject: [PATCH 0833/1217] first draft for R-3.1.3-foss-2015a.eb --- .../easyconfigs/r/R/R-3.1.3-foss-2015a.eb | 375 ++++++++++++++++++ 1 file changed, 375 insertions(+) create mode 100644 easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb diff --git a/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb new file mode 100644 index 0000000000..d69a4416b4 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb @@ -0,0 +1,375 @@ +name = 'R' +version = '3.1.3' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.16'), # for plotting in R + ('libjpeg-turbo', '1.4.0'), # for plottting in R + ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it +] + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.r-project.org/src/contrib/', # current version of packages + 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': name_tmpl, +} +# Bioconductor packages have a different download url +bioconductor_options = { + 'source_urls': [ + 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', + ], + 'source_tmpl': name_tmpl, +} + +# !! order of packages is important !! +# packages updated on January 8th 2015 +exts_list = [ + # default libraries, only here to sanity check their presence + 'base', + 'datasets', + 'graphics', + 'grDevices', + 'grid', + 'methods', + 'splines', + 'stats', + 'stats4', + 'tools', + 'utils', + # non-standard libraries, should be specified with fixed versions! + ('Rmpi', '0.6-5', dict(ext_options.items() + [('patches', ['Rmpi-0.6-5_impi5.patch'])])), + ('abind', '1.4-0', ext_options), + ('magic', '1.5-6', ext_options), + ('geometry', '0.3-4', dict(ext_options.items() + [('patches', ['geometry-0.3-4-icc.patch'])])), + ('bit', '1.1-12', ext_options), + ('filehash', '2.2-2', ext_options), + ('ff', '2.2-13', ext_options), + ('bnlearn', '3.6', ext_options), + ('bootstrap', '2014.4', ext_options), + ('combinat', '0.0-8', ext_options), + ('deal', '1.2-37', ext_options), + ('fdrtool', '1.2.13', ext_options), + ('formatR', '1.0', ext_options), + ('gtools', '3.4.1', ext_options), + ('gdata', '2.13.3', ext_options), + ('GSA', '1.03', ext_options), + ('highr', '0.4', ext_options), + ('infotheo', '1.2.0', ext_options), + ('lars', '1.2', ext_options), + ('lazy', '1.2-15', ext_options), + ('kernlab', '0.9-19', ext_options), + ('mime', '0.2', ext_options), + ('markdown', '0.7.4', ext_options), + ('mlbench', '2.1-1', ext_options), + ('NLP', '0.1-5', ext_options), + ('mclust', '4.4', ext_options), + ('RANN', '2.4.1', ext_options), + ('rmeta', '2.16', ext_options), + ('segmented', '0.5-1.0', ext_options), + ('som', '0.3-5', ext_options), + ('SuppDists', '1.1-9.1', ext_options), + ('stabledist', '0.6-6', ext_options), + ('survivalROC', '1.0.3', ext_options), + ('pspline', '1.0-16', ext_options), + ('timeDate', '3011.99', ext_options), + ('longmemo', '1.0-0', ext_options), + ('ADGofTest', '0.3', ext_options), + ('ade4', '1.6-2', ext_options), + ('AlgDesign', '1.1-7.3', ext_options), + ('base64enc', '0.1-2', ext_options), + ('BH', '1.55.0-3', ext_options), + ('brew', '1.0-6', ext_options), + ('Brobdingnag', '1.2-4', ext_options), + ('corpcor', '1.6.7', ext_options), + ('longitudinal', '1.1.10', ext_options), + ('checkmate', '1.5.1', ext_options), + ('cubature', '1.1-2', ext_options), + ('DEoptimR', '1.0-2', ext_options), + ('digest', '0.6.8', ext_options), + ('fastmatch', '1.0-4', ext_options), + ('ffbase', '0.11.3', ext_options), + ('iterators', '1.0.7', ext_options), + ('maps', '2.3-9', ext_options), + ('nnls', '1.4', ext_options), + ('sendmailR', '1.2-1', ext_options), + ('spam', '1.0-1', ext_options), + ('subplex', '1.1-4', ext_options), + ('stringr', '0.6.2', ext_options), + ('evaluate', '0.5.5', ext_options), + ('logspline', '2.1.5', ext_options), + ('ncbit', '2013.03.29', ext_options), + ('permute', '0.8-3', ext_options), + ('plotrix', '3.5-10', ext_options), + ('randomForest', '4.6-10', ext_options), + ('scatterplot3d', '0.3-35', ext_options), + ('SparseM', '1.6', ext_options), + ('tripack', '1.3-6', ext_options), + ('irace', '1.06', ext_options), + ('rJava', '0.9-6', ext_options), + ('lattice', '0.20-29', ext_options), + ('RColorBrewer', '1.1-2', ext_options), + ('latticeExtra', '0.6-26', ext_options), + ('Matrix', '1.1-4', ext_options), + ('png', '0.1-7', ext_options), + ('Rcpp', '0.11.3', ext_options), + ('RcppArmadillo', '0.4.600.0', ext_options), + ('plyr', '1.8.1', ext_options), + ('pROC', '1.7.3', ext_options), + ('quadprog', '1.5-5', ext_options), + ('BB', '2014.10-1', ext_options), + ('BBmisc', '1.8', ext_options), + ('fail', '1.2', ext_options), + ('rlecuyer', '0.3-3', ext_options), + ('snow', '0.3-13', ext_options), + ('MASS', '7.3-35', ext_options), + ('tree', '1.0-35', ext_options), + ('pls', '2.4-3', ext_options), + ('class', '7.3-11', ext_options), + ('e1071', '1.6-4', ext_options), + ('nnet', '7.3-8', ext_options), + ('car', '2.0-22', ext_options), + ('colorspace', '1.2-4', ext_options), + ('robustbase', '0.92-2', ext_options), + ('sp', '1.0-17', ext_options), + ('vcd', '1.3-2', ext_options), + ('snowfall', '1.84-6', ext_options), + ('rpart', '4.1-8', ext_options), + ('mice', '2.22', ext_options), + ('nlme', '3.1-118', ext_options), + ('urca', '1.2-8', ext_options), + ('fracdiff', '1.4-2', ext_options), + ('mgcv', '1.8-4', ext_options), + ('logistf', '1.21', ext_options), + ('akima', '0.5-11', ext_options), + ('bitops', '1.0-6', ext_options), + ('boot', '1.3-13', ext_options), + ('mixtools', '1.0.2', ext_options), + ('cluster', '1.15.3', ext_options), + ('gclus', '1.3.1', ext_options), + ('coda', '0.16-1', ext_options), + ('codetools', '0.2-9', ext_options), + ('foreach', '1.4.2', ext_options), + ('doMC', '1.3.3', ext_options), + ('DBI', '0.3.1', ext_options), + ('foreign', '0.8-62', ext_options), + ('survival', '2.37-7', ext_options), + ('gam', '1.09.1', ext_options), + ('gamlss.data', '4.2-7', ext_options), + ('gamlss.dist', '4.3-1', ext_options), + ('hwriter', '1.3.2', ext_options), + ('KernSmooth', '2.23-13', ext_options), + ('zoo', '1.7-11', ext_options), + ('xts', '0.9-7', ext_options), + ('TTR', '0.22-0', ext_options), + ('quantmod', '0.4-3', ext_options), + ('lmtest', '0.9-33', ext_options), + ('mnormt', '1.5-1', ext_options), + ('mvtnorm', '1.0-2', ext_options), + ('pcaPP', '1.9-60', ext_options), + ('numDeriv', '2012.9-1', ext_options), + ('lava', '1.3', ext_options), + ('prodlim', '1.5.1', ext_options), + ('pscl', '1.4.6', ext_options), + ('RSQLite', '1.0.0', ext_options), + ('BatchJobs', '1.5', ext_options), + ('sandwich', '2.3-2', ext_options), + ('sfsmisc', '1.0-27', ext_options), + ('spatial', '7.3-8', ext_options), + ('VGAM', '0.9-6', ext_options), + ('waveslim', '1.7.3', ext_options), + ('xtable', '1.7-4', ext_options), + ('profileModel', '0.5-9', ext_options), + ('brglm', '0.5-9', ext_options), + ('deSolve', '1.11', ext_options), + ('tseriesChaos', '0.1-13', ext_options), + ('tseries', '0.10-32', ext_options), + ('fastICA', '1.2-0', ext_options), + ('R.methodsS3', '1.6.1', ext_options), + ('R.oo', '1.18.0', ext_options), + ('cgdsr', '1.1.33', ext_options), + ('R.utils', '1.34.0', ext_options), + ('R.matlab', '3.1.1', ext_options), + ('BiocGenerics', '0.12.1', bioconductor_options), + ('Biobase', '2.26.0', bioconductor_options), + ('S4Vectors', '0.4.0', bioconductor_options), + ('IRanges', '2.0.1', bioconductor_options), + ('GenomeInfoDb', '1.2.4', bioconductor_options), + ('AnnotationDbi', '1.28.1', bioconductor_options), + ('XVector', '0.6.0', bioconductor_options), + ('zlibbioc', '1.12.0', bioconductor_options), + ('Biostrings', '2.34.1', bioconductor_options), + ('GenomicRanges', '1.18.4', bioconductor_options), + ('Rsamtools', '1.18.3', bioconductor_options), + ('BiocParallel', '1.0.3', bioconductor_options), + ('GenomicAlignments', '1.2.2', bioconductor_options), + ('ShortRead', '1.24.0', bioconductor_options), + ('graph', '1.44.1', bioconductor_options), + ('gbm', '2.1', ext_options), + ('dichromat', '2.0-0', ext_options), + ('Formula', '1.1-2', ext_options), + ('acepack', '1.3-3.3', ext_options), + ('Hmisc', '3.14-6', ext_options), + ('munsell', '0.4.2', ext_options), + ('labeling', '0.3', ext_options), + ('scales', '0.2.4', ext_options), + ('fastcluster', '1.1.15', ext_options), + ('reshape2', '1.4.1', ext_options), + ('chron', '2.3-45', ext_options), + ('data.table', '1.9.4', ext_options), + ('gtable', '0.1.2', ext_options), + ('proto', '0.3-10', ext_options), + ('ggplot2', '1.0.0', ext_options), + ('igraph', '0.7.1', ext_options), + ('GeneNet', '1.2.11', ext_options), + ('ape', '3.2', ext_options), + ('htmltools', '0.2.6', ext_options), + ('RJSONIO', '1.3-0', ext_options), + ('caTools', '1.17.1', ext_options), + ('gplots', '2.16.0', ext_options), + ('ROCR', '1.0-5', ext_options), + ('httpuv', '1.3.2', ext_options), + ('R6', '2.0.1', ext_options), + ('shiny', '0.10.2.2', ext_options), + ('adegenet', '1.4-2', ext_options), + ('phylobase', '0.6.8', ext_options), + ('adephylo', '1.1-6', ext_options), + ('animation', '2.3', ext_options), + ('bigmemory.sri', '0.1.3', ext_options), + ('bigmemory', '4.4.6', ext_options), + ('calibrate', '1.7.2', ext_options), + ('clusterGeneration', '1.3.1', ext_options), + ('raster', '2.3-12', ext_options), + ('dismo', '1.0-5', ext_options), + ('expm', '0.99-1.1', ext_options), + ('extrafontdb', '1.0', ext_options), + ('Rttf2pt1', '1.3.2', ext_options), + ('extrafont', '0.17', ext_options), + ('fields', '7.1', ext_options), + ('shapefiles', '0.7', ext_options), + ('fossil', '0.3.7', ext_options), + ('geiger', '2.0.3', ext_options), + ('glmnet', '1.9-8', ext_options), + ('labdsv', '1.6-1', ext_options), + ('MatrixModels', '0.3-1.1', ext_options), + ('stabs', '0.5-0', ext_options), + ('mboost', '2.4-1', ext_options), + ('msm', '1.5', ext_options), + ('nor1mix', '1.2-0', ext_options), + ('np', '0.60-2', ext_options), + ('polynom', '1.3-8', ext_options), + ('quantreg', '5.05', ext_options), + ('RcppEigen', '0.3.2.3.0', ext_options), + ('polspline', '1.1.9', ext_options), + ('TH.data', '1.0-6', ext_options), + ('multcomp', '1.3-8', ext_options), + ('rms', '4.2-1', ext_options), + ('RWekajars', '3.7.11-1', ext_options), + ('RWeka', '0.4-23', ext_options), + ('slam', '0.1-32', ext_options), + ('tm', '0.6', ext_options), + ('TraMineR', '1.8-8', ext_options), + ('chemometrics', '1.3.8', ext_options), + ('FNN', '1.1', ext_options), + ('ipred', '0.9-3', ext_options), + ('knitr', '1.8', ext_options), + ('statmod', '1.4.20', ext_options), + ('miscTools', '0.6-16', ext_options), + ('maxLik', '1.2-4', ext_options), + ('mlogit', '0.2-4', ext_options), + ('getopt', '1.20.0', ext_options), + ('gsalib', '2.1', ext_options), + ('reshape', '0.8.5', ext_options), + ('optparse', '1.3.0', ext_options), + ('klaR', '0.6-12', ext_options), + ('neuRosim', '0.2-12', ext_options), + ('affyio', '1.34.0', bioconductor_options), + ('BiocInstaller', '1.16.2', bioconductor_options), + ('preprocessCore', '1.28.0', bioconductor_options), + ('affy', '1.44.0', bioconductor_options), + ('GO.db', '3.0.0', bioconductor_options), + ('limma', '3.22.7', bioconductor_options), + ('RBGL', '1.42.0', bioconductor_options), + ('org.Hs.eg.db', '3.0.0', bioconductor_options), + ('AnnotationForge', '1.8.2', bioconductor_options), + ('KEGG.db', '3.0.0', bioconductor_options), + ('annaffy', '1.38.0', bioconductor_options), + ('gcrma', '2.38.0', bioconductor_options), + ('oligoClasses', '1.28.0', bioconductor_options), + ('edgeR', '3.8.6', bioconductor_options), + ('PFAM.db', '3.0.0', bioconductor_options), + ('locfit', '1.5-9.1', ext_options), + ('gridExtra', '0.9.1', ext_options), + ('GGally', '0.5.0', ext_options), + ('baySeq', '2.0.50', bioconductor_options), + ('beanplot', '1.2', ext_options), + ('clValid', '0.6-6', ext_options), + ('qvalue', '1.43.0', bioconductor_options), + ('impute', '1.40.0', bioconductor_options), + ('matrixStats', '0.12.2', ext_options), + ('samr', '2.0', ext_options), + ('DEGseq', '1.20.0', bioconductor_options), + ('DiscriMiner', '0.1-29', ext_options), + ('ellipse', '0.3-8', ext_options), + ('leaps', '2.9', ext_options), + ('FactoMineR', '1.28', ext_options), + ('modeltools', '0.2-21', ext_options), + ('flexclust', '1.3-4', ext_options), + ('flexmix', '2.3-12', ext_options), + ('prabclus', '2.2-6', ext_options), + ('diptest', '0.75-6', ext_options), + ('trimcluster', '0.1-2', ext_options), + ('fpc', '2.1-9', ext_options), + ('BiasedUrn', '1.06.1', ext_options), + ('hgu133plus2.db', '3.0.0', bioconductor_options), + ('TeachingDemos', '2.9', ext_options), + ('jsonlite', '0.9.14', ext_options), + ('kohonen', '2.0.15', ext_options), + ('base64', '1.1', ext_options), + ('illuminaio', '0.8.0', bioconductor_options), + ('registry', '0.2', ext_options), + ('pkgmaker', '0.22', ext_options), + ('rngtools', '1.2.4', ext_options), + ('doRNG', '1.6', ext_options), + ('bumphunter', '1.6.0', bioconductor_options), + ('multtest', '2.22.0', bioconductor_options), + ('siggenes', '1.40.0', bioconductor_options), + ('nleqslv', '2.5', ext_options), + ('DynDoc', '1.44.0', bioconductor_options), + ('genoset', '1.20.0', bioconductor_options), + ('RGCCA', '2.0', ext_options), + ('pheatmap', '0.7.7', ext_options), + ('multtest', '2.22.0', bioconductor_options), + ('NOISeq', '2.8.0', bioconductor_options), + ('openxlsx', '2.2.1', ext_options), + ('Rgraphviz', '2.10.0', bioconductor_options), + ('pvclust', '1.3-2', ext_options), + ('RCircos', '1.1.2', ext_options), + ('reshape', '0.8.5', ext_options), + ('RNASeqPower', '1.6.0', bioconductor_options), + ('VennDiagram', '1.6.9', ext_options), + ('xlsxjars', '0.6.1', ext_options), + ('xlsx', '0.5.7', ext_options), +] + +moduleclass = 'lang' + -- GitLab From c298ff51fd4edf381e3274205afbb8b0338852d8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 22 Mar 2015 09:30:20 +0100 Subject: [PATCH 0834/1217] bump all extensions to latest version in R 3.1.3 foss/2015a easyconfig --- .../easyconfigs/r/R/R-3.1.3-foss-2015a.eb | 158 +++++++++--------- 1 file changed, 80 insertions(+), 78 deletions(-) diff --git a/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb index d69a4416b4..fcf0a79b7f 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb @@ -58,17 +58,17 @@ exts_list = [ 'utils', # non-standard libraries, should be specified with fixed versions! ('Rmpi', '0.6-5', dict(ext_options.items() + [('patches', ['Rmpi-0.6-5_impi5.patch'])])), - ('abind', '1.4-0', ext_options), + ('abind', '1.4-3', ext_options), ('magic', '1.5-6', ext_options), - ('geometry', '0.3-4', dict(ext_options.items() + [('patches', ['geometry-0.3-4-icc.patch'])])), + ('geometry', '0.3-5', dict(ext_options.items() + [('patches', ['geometry-0.3-4-icc.patch'])])), ('bit', '1.1-12', ext_options), ('filehash', '2.2-2', ext_options), ('ff', '2.2-13', ext_options), - ('bnlearn', '3.6', ext_options), - ('bootstrap', '2014.4', ext_options), + ('bnlearn', '3.7.1', ext_options), + ('bootstrap', '2015.2', ext_options), ('combinat', '0.0-8', ext_options), ('deal', '1.2-37', ext_options), - ('fdrtool', '1.2.13', ext_options), + ('fdrtool', '1.2.14', ext_options), ('formatR', '1.0', ext_options), ('gtools', '3.4.1', ext_options), ('gdata', '2.13.3', ext_options), @@ -77,21 +77,21 @@ exts_list = [ ('infotheo', '1.2.0', ext_options), ('lars', '1.2', ext_options), ('lazy', '1.2-15', ext_options), - ('kernlab', '0.9-19', ext_options), + ('kernlab', '0.9-20', ext_options), ('mime', '0.2', ext_options), ('markdown', '0.7.4', ext_options), ('mlbench', '2.1-1', ext_options), - ('NLP', '0.1-5', ext_options), + ('NLP', '0.1-6', ext_options), ('mclust', '4.4', ext_options), ('RANN', '2.4.1', ext_options), ('rmeta', '2.16', ext_options), - ('segmented', '0.5-1.0', ext_options), + ('segmented', '0.5-1.1', ext_options), ('som', '0.3-5', ext_options), ('SuppDists', '1.1-9.1', ext_options), ('stabledist', '0.6-6', ext_options), ('survivalROC', '1.0.3', ext_options), ('pspline', '1.0-16', ext_options), - ('timeDate', '3011.99', ext_options), + ('timeDate', '3012.100', ext_options), ('longmemo', '1.0-0', ext_options), ('ADGofTest', '0.3', ext_options), ('ade4', '1.6-2', ext_options), @@ -101,8 +101,8 @@ exts_list = [ ('brew', '1.0-6', ext_options), ('Brobdingnag', '1.2-4', ext_options), ('corpcor', '1.6.7', ext_options), - ('longitudinal', '1.1.10', ext_options), - ('checkmate', '1.5.1', ext_options), + ('longitudinal', '1.1.11', ext_options), + ('checkmate', '1.5.2', ext_options), ('cubature', '1.1-2', ext_options), ('DEoptimR', '1.0-2', ext_options), ('digest', '0.6.8', ext_options), @@ -119,96 +119,96 @@ exts_list = [ ('logspline', '2.1.5', ext_options), ('ncbit', '2013.03.29', ext_options), ('permute', '0.8-3', ext_options), - ('plotrix', '3.5-10', ext_options), + ('plotrix', '3.5-11', ext_options), ('randomForest', '4.6-10', ext_options), ('scatterplot3d', '0.3-35', ext_options), ('SparseM', '1.6', ext_options), ('tripack', '1.3-6', ext_options), ('irace', '1.06', ext_options), ('rJava', '0.9-6', ext_options), - ('lattice', '0.20-29', ext_options), + ('lattice', '0.20-30', ext_options), ('RColorBrewer', '1.1-2', ext_options), ('latticeExtra', '0.6-26', ext_options), - ('Matrix', '1.1-4', ext_options), + ('Matrix', '1.1-5', ext_options), ('png', '0.1-7', ext_options), - ('Rcpp', '0.11.3', ext_options), - ('RcppArmadillo', '0.4.600.0', ext_options), + ('Rcpp', '0.11.5', ext_options), + ('RcppArmadillo', '0.4.650.1.1', ext_options), ('plyr', '1.8.1', ext_options), ('pROC', '1.7.3', ext_options), ('quadprog', '1.5-5', ext_options), ('BB', '2014.10-1', ext_options), - ('BBmisc', '1.8', ext_options), + ('BBmisc', '1.9', ext_options), ('fail', '1.2', ext_options), ('rlecuyer', '0.3-3', ext_options), ('snow', '0.3-13', ext_options), - ('MASS', '7.3-35', ext_options), + ('MASS', '7.3-40', ext_options), ('tree', '1.0-35', ext_options), ('pls', '2.4-3', ext_options), - ('class', '7.3-11', ext_options), + ('class', '7.3-12', ext_options), ('e1071', '1.6-4', ext_options), - ('nnet', '7.3-8', ext_options), - ('car', '2.0-22', ext_options), - ('colorspace', '1.2-4', ext_options), - ('robustbase', '0.92-2', ext_options), + ('nnet', '7.3-9', ext_options), + ('car', '2.0-25', ext_options), + ('colorspace', '1.2-6', ext_options), + ('robustbase', '0.92-3', ext_options), ('sp', '1.0-17', ext_options), ('vcd', '1.3-2', ext_options), ('snowfall', '1.84-6', ext_options), - ('rpart', '4.1-8', ext_options), + ('rpart', '4.1-9', ext_options), ('mice', '2.22', ext_options), - ('nlme', '3.1-118', ext_options), + ('nlme', '3.1-120', ext_options), ('urca', '1.2-8', ext_options), ('fracdiff', '1.4-2', ext_options), - ('mgcv', '1.8-4', ext_options), + ('mgcv', '1.8-5', ext_options), ('logistf', '1.21', ext_options), ('akima', '0.5-11', ext_options), ('bitops', '1.0-6', ext_options), - ('boot', '1.3-13', ext_options), + ('boot', '1.3-15', ext_options), ('mixtools', '1.0.2', ext_options), - ('cluster', '1.15.3', ext_options), + ('cluster', '2.0.1', ext_options), ('gclus', '1.3.1', ext_options), - ('coda', '0.16-1', ext_options), - ('codetools', '0.2-9', ext_options), + ('coda', '0.17-1', ext_options), + ('codetools', '0.2-11', ext_options), ('foreach', '1.4.2', ext_options), ('doMC', '1.3.3', ext_options), ('DBI', '0.3.1', ext_options), - ('foreign', '0.8-62', ext_options), - ('survival', '2.37-7', ext_options), + ('foreign', '0.8-63', ext_options), + ('survival', '2.38-1', ext_options), ('gam', '1.09.1', ext_options), ('gamlss.data', '4.2-7', ext_options), - ('gamlss.dist', '4.3-1', ext_options), + ('gamlss.dist', '4.3-4', ext_options), ('hwriter', '1.3.2', ext_options), - ('KernSmooth', '2.23-13', ext_options), - ('zoo', '1.7-11', ext_options), + ('KernSmooth', '2.23-14', ext_options), + ('zoo', '1.7-12', ext_options), ('xts', '0.9-7', ext_options), ('TTR', '0.22-0', ext_options), - ('quantmod', '0.4-3', ext_options), + ('quantmod', '0.4-4', ext_options), ('lmtest', '0.9-33', ext_options), ('mnormt', '1.5-1', ext_options), ('mvtnorm', '1.0-2', ext_options), ('pcaPP', '1.9-60', ext_options), ('numDeriv', '2012.9-1', ext_options), - ('lava', '1.3', ext_options), + ('lava', '1.4.0', ext_options), ('prodlim', '1.5.1', ext_options), - ('pscl', '1.4.6', ext_options), + ('pscl', '1.4.8', ext_options), ('RSQLite', '1.0.0', ext_options), - ('BatchJobs', '1.5', ext_options), + ('BatchJobs', '1.6', ext_options), ('sandwich', '2.3-2', ext_options), ('sfsmisc', '1.0-27', ext_options), - ('spatial', '7.3-8', ext_options), - ('VGAM', '0.9-6', ext_options), - ('waveslim', '1.7.3', ext_options), + ('spatial', '7.3-9', ext_options), + ('VGAM', '0.9-7', ext_options), + ('waveslim', '1.7.5', ext_options), ('xtable', '1.7-4', ext_options), ('profileModel', '0.5-9', ext_options), ('brglm', '0.5-9', ext_options), ('deSolve', '1.11', ext_options), ('tseriesChaos', '0.1-13', ext_options), - ('tseries', '0.10-32', ext_options), + ('tseries', '0.10-34', ext_options), ('fastICA', '1.2-0', ext_options), - ('R.methodsS3', '1.6.1', ext_options), - ('R.oo', '1.18.0', ext_options), + ('R.methodsS3', '1.7.0', ext_options), + ('R.oo', '1.19.0', ext_options), ('cgdsr', '1.1.33', ext_options), - ('R.utils', '1.34.0', ext_options), - ('R.matlab', '3.1.1', ext_options), + ('R.utils', '2.0.0', ext_options), + ('R.matlab', '3.2.0', ext_options), ('BiocGenerics', '0.12.1', bioconductor_options), ('Biobase', '2.26.0', bioconductor_options), ('S4Vectors', '0.4.0', bioconductor_options), @@ -224,23 +224,23 @@ exts_list = [ ('GenomicAlignments', '1.2.2', bioconductor_options), ('ShortRead', '1.24.0', bioconductor_options), ('graph', '1.44.1', bioconductor_options), - ('gbm', '2.1', ext_options), + ('gbm', '2.1.1', ext_options), ('dichromat', '2.0-0', ext_options), - ('Formula', '1.1-2', ext_options), + ('Formula', '1.2-0', ext_options), ('acepack', '1.3-3.3', ext_options), - ('Hmisc', '3.14-6', ext_options), + ('Hmisc', '3.15-0', ext_options), ('munsell', '0.4.2', ext_options), ('labeling', '0.3', ext_options), ('scales', '0.2.4', ext_options), - ('fastcluster', '1.1.15', ext_options), + ('fastcluster', '1.1.16', ext_options), ('reshape2', '1.4.1', ext_options), ('chron', '2.3-45', ext_options), ('data.table', '1.9.4', ext_options), ('gtable', '0.1.2', ext_options), ('proto', '0.3-10', ext_options), - ('ggplot2', '1.0.0', ext_options), + ('ggplot2', '1.0.1', ext_options), ('igraph', '0.7.1', ext_options), - ('GeneNet', '1.2.11', ext_options), + ('GeneNet', '1.2.12', ext_options), ('ape', '3.2', ext_options), ('htmltools', '0.2.6', ext_options), ('RJSONIO', '1.3-0', ext_options), @@ -249,7 +249,7 @@ exts_list = [ ('ROCR', '1.0-5', ext_options), ('httpuv', '1.3.2', ext_options), ('R6', '2.0.1', ext_options), - ('shiny', '0.10.2.2', ext_options), + ('shiny', '0.11.1', ext_options), ('adegenet', '1.4-2', ext_options), ('phylobase', '0.6.8', ext_options), ('adephylo', '1.1-6', ext_options), @@ -257,41 +257,41 @@ exts_list = [ ('bigmemory.sri', '0.1.3', ext_options), ('bigmemory', '4.4.6', ext_options), ('calibrate', '1.7.2', ext_options), - ('clusterGeneration', '1.3.1', ext_options), - ('raster', '2.3-12', ext_options), - ('dismo', '1.0-5', ext_options), + ('clusterGeneration', '1.3.4', ext_options), + ('raster', '2.3-33', ext_options), + ('dismo', '1.0-12', ext_options), ('expm', '0.99-1.1', ext_options), ('extrafontdb', '1.0', ext_options), - ('Rttf2pt1', '1.3.2', ext_options), + ('Rttf2pt1', '1.3.3', ext_options), ('extrafont', '0.17', ext_options), - ('fields', '7.1', ext_options), + ('fields', '8.2-1', ext_options), ('shapefiles', '0.7', ext_options), ('fossil', '0.3.7', ext_options), ('geiger', '2.0.3', ext_options), ('glmnet', '1.9-8', ext_options), ('labdsv', '1.6-1', ext_options), - ('MatrixModels', '0.3-1.1', ext_options), - ('stabs', '0.5-0', ext_options), - ('mboost', '2.4-1', ext_options), + ('MatrixModels', '0.4-0', ext_options), + ('stabs', '0.5-1', ext_options), + ('mboost', '2.4-2', ext_options), ('msm', '1.5', ext_options), ('nor1mix', '1.2-0', ext_options), ('np', '0.60-2', ext_options), ('polynom', '1.3-8', ext_options), - ('quantreg', '5.05', ext_options), - ('RcppEigen', '0.3.2.3.0', ext_options), + ('quantreg', '5.11', ext_options), + ('RcppEigen', '0.3.2.4.0', ext_options), ('polspline', '1.1.9', ext_options), ('TH.data', '1.0-6', ext_options), - ('multcomp', '1.3-8', ext_options), - ('rms', '4.2-1', ext_options), - ('RWekajars', '3.7.11-1', ext_options), - ('RWeka', '0.4-23', ext_options), + ('multcomp', '1.4-0', ext_options), + ('rms', '4.3-0', ext_options), + ('RWekajars', '3.7.12-1', ext_options), + ('RWeka', '0.4-24', ext_options), ('slam', '0.1-32', ext_options), ('tm', '0.6', ext_options), - ('TraMineR', '1.8-8', ext_options), - ('chemometrics', '1.3.8', ext_options), + ('TraMineR', '1.8-9', ext_options), + ('chemometrics', '1.3.9', ext_options), ('FNN', '1.1', ext_options), - ('ipred', '0.9-3', ext_options), - ('knitr', '1.8', ext_options), + ('ipred', '0.9-4', ext_options), + ('knitr', '1.9', ext_options), ('statmod', '1.4.20', ext_options), ('miscTools', '0.6-16', ext_options), ('maxLik', '1.2-4', ext_options), @@ -325,16 +325,16 @@ exts_list = [ ('clValid', '0.6-6', ext_options), ('qvalue', '1.43.0', bioconductor_options), ('impute', '1.40.0', bioconductor_options), - ('matrixStats', '0.12.2', ext_options), + ('matrixStats', '0.14.0', ext_options), ('samr', '2.0', ext_options), ('DEGseq', '1.20.0', bioconductor_options), ('DiscriMiner', '0.1-29', ext_options), ('ellipse', '0.3-8', ext_options), ('leaps', '2.9', ext_options), - ('FactoMineR', '1.28', ext_options), + ('FactoMineR', '1.29', ext_options), ('modeltools', '0.2-21', ext_options), ('flexclust', '1.3-4', ext_options), - ('flexmix', '2.3-12', ext_options), + ('flexmix', '2.3-13', ext_options), ('prabclus', '2.2-6', ext_options), ('diptest', '0.75-6', ext_options), ('trimcluster', '0.1-2', ext_options), @@ -353,14 +353,14 @@ exts_list = [ ('bumphunter', '1.6.0', bioconductor_options), ('multtest', '2.22.0', bioconductor_options), ('siggenes', '1.40.0', bioconductor_options), - ('nleqslv', '2.5', ext_options), + ('nleqslv', '2.6', ext_options), ('DynDoc', '1.44.0', bioconductor_options), ('genoset', '1.20.0', bioconductor_options), ('RGCCA', '2.0', ext_options), - ('pheatmap', '0.7.7', ext_options), + ('pheatmap', '1.0.2', ext_options), ('multtest', '2.22.0', bioconductor_options), ('NOISeq', '2.8.0', bioconductor_options), - ('openxlsx', '2.2.1', ext_options), + ('openxlsx', '2.4.0', ext_options), ('Rgraphviz', '2.10.0', bioconductor_options), ('pvclust', '1.3-2', ext_options), ('RCircos', '1.1.2', ext_options), @@ -369,6 +369,8 @@ exts_list = [ ('VennDiagram', '1.6.9', ext_options), ('xlsxjars', '0.6.1', ext_options), ('xlsx', '0.5.7', ext_options), + ('GEOquery', '2.32.0', bioconductor_options), + ('Rsubread', '1.16.1', bioconductor_options), ] moduleclass = 'lang' -- GitLab From 2c0dc0f94710a45f78ed899f9c54d7284da13c68 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 22 Mar 2015 20:04:21 +0100 Subject: [PATCH 0835/1217] fix inter-pkg deps for R v3.1.3 --- .../easyconfigs/r/R/R-3.1.3-foss-2015a.eb | 26 +++++++++++-------- 1 file changed, 15 insertions(+), 11 deletions(-) diff --git a/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb index fcf0a79b7f..9970cb1722 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb @@ -147,6 +147,14 @@ exts_list = [ ('class', '7.3-12', ext_options), ('e1071', '1.6-4', ext_options), ('nnet', '7.3-9', ext_options), + ('nlme', '3.1-120', ext_options), + ('mgcv', '1.8-5', ext_options), + ('minqa', '1.2.4', ext_options), + ('nloptr', '1.0.4', ext_options), + ('RcppEigen', '0.3.2.4.0', ext_options), + ('lme4', '1.1-7', ext_options), + ('pbkrtest', '0.4-2', ext_options), + ('quantreg', '5.11', ext_options), ('car', '2.0-25', ext_options), ('colorspace', '1.2-6', ext_options), ('robustbase', '0.92-3', ext_options), @@ -155,10 +163,8 @@ exts_list = [ ('snowfall', '1.84-6', ext_options), ('rpart', '4.1-9', ext_options), ('mice', '2.22', ext_options), - ('nlme', '3.1-120', ext_options), ('urca', '1.2-8', ext_options), ('fracdiff', '1.4-2', ext_options), - ('mgcv', '1.8-5', ext_options), ('logistf', '1.21', ext_options), ('akima', '0.5-11', ext_options), ('bitops', '1.0-6', ext_options), @@ -228,17 +234,17 @@ exts_list = [ ('dichromat', '2.0-0', ext_options), ('Formula', '1.2-0', ext_options), ('acepack', '1.3-3.3', ext_options), - ('Hmisc', '3.15-0', ext_options), + ('gtable', '0.1.2', ext_options), + ('reshape2', '1.4.1', ext_options), + ('proto', '0.3-10', ext_options), ('munsell', '0.4.2', ext_options), ('labeling', '0.3', ext_options), ('scales', '0.2.4', ext_options), + ('ggplot2', '1.0.1', ext_options), + ('Hmisc', '3.15-0', ext_options), ('fastcluster', '1.1.16', ext_options), - ('reshape2', '1.4.1', ext_options), ('chron', '2.3-45', ext_options), ('data.table', '1.9.4', ext_options), - ('gtable', '0.1.2', ext_options), - ('proto', '0.3-10', ext_options), - ('ggplot2', '1.0.1', ext_options), ('igraph', '0.7.1', ext_options), ('GeneNet', '1.2.12', ext_options), ('ape', '3.2', ext_options), @@ -277,11 +283,10 @@ exts_list = [ ('nor1mix', '1.2-0', ext_options), ('np', '0.60-2', ext_options), ('polynom', '1.3-8', ext_options), - ('quantreg', '5.11', ext_options), - ('RcppEigen', '0.3.2.4.0', ext_options), ('polspline', '1.1.9', ext_options), ('TH.data', '1.0-6', ext_options), ('multcomp', '1.4-0', ext_options), + ('gridExtra', '0.9.1', ext_options), ('rms', '4.3-0', ext_options), ('RWekajars', '3.7.12-1', ext_options), ('RWeka', '0.4-24', ext_options), @@ -318,7 +323,6 @@ exts_list = [ ('edgeR', '3.8.6', bioconductor_options), ('PFAM.db', '3.0.0', bioconductor_options), ('locfit', '1.5-9.1', ext_options), - ('gridExtra', '0.9.1', ext_options), ('GGally', '0.5.0', ext_options), ('baySeq', '2.0.50', bioconductor_options), ('beanplot', '1.2', ext_options), @@ -331,6 +335,7 @@ exts_list = [ ('DiscriMiner', '0.1-29', ext_options), ('ellipse', '0.3-8', ext_options), ('leaps', '2.9', ext_options), + ('flashClust', '1.01-2', ext_options), ('FactoMineR', '1.29', ext_options), ('modeltools', '0.2-21', ext_options), ('flexclust', '1.3-4', ext_options), @@ -369,7 +374,6 @@ exts_list = [ ('VennDiagram', '1.6.9', ext_options), ('xlsxjars', '0.6.1', ext_options), ('xlsx', '0.5.7', ext_options), - ('GEOquery', '2.32.0', bioconductor_options), ('Rsubread', '1.16.1', bioconductor_options), ] -- GitLab From 7f53b3f9c666e092aacdb40267cbc32b7d74263c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 22 Mar 2015 21:15:21 +0100 Subject: [PATCH 0836/1217] add easyconfig for R v3.1.3 with intel/2015a --- .../easyconfigs/r/R/R-3.1.3-intel-2015a.eb | 381 ++++++++++++++++++ 1 file changed, 381 insertions(+) create mode 100644 easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb diff --git a/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb new file mode 100644 index 0000000000..9ff1e63f74 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb @@ -0,0 +1,381 @@ +name = 'R' +version = '3.1.3' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.16'), # for plotting in R + ('libjpeg-turbo', '1.4.0'), # for plottting in R + ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it +] + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.r-project.org/src/contrib/', # current version of packages + 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': name_tmpl, +} +# Bioconductor packages have a different download url +bioconductor_options = { + 'source_urls': [ + 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', + ], + 'source_tmpl': name_tmpl, +} + +# !! order of packages is important !! +# packages updated on January 8th 2015 +exts_list = [ + # default libraries, only here to sanity check their presence + 'base', + 'datasets', + 'graphics', + 'grDevices', + 'grid', + 'methods', + 'splines', + 'stats', + 'stats4', + 'tools', + 'utils', + # non-standard libraries, should be specified with fixed versions! + ('Rmpi', '0.6-5', dict(ext_options.items() + [('patches', ['Rmpi-0.6-5_impi5.patch'])])), + ('abind', '1.4-3', ext_options), + ('magic', '1.5-6', ext_options), + ('geometry', '0.3-5', dict(ext_options.items() + [('patches', ['geometry-0.3-4-icc.patch'])])), + ('bit', '1.1-12', ext_options), + ('filehash', '2.2-2', ext_options), + ('ff', '2.2-13', ext_options), + ('bnlearn', '3.7.1', ext_options), + ('bootstrap', '2015.2', ext_options), + ('combinat', '0.0-8', ext_options), + ('deal', '1.2-37', ext_options), + ('fdrtool', '1.2.14', ext_options), + ('formatR', '1.0', ext_options), + ('gtools', '3.4.1', ext_options), + ('gdata', '2.13.3', ext_options), + ('GSA', '1.03', ext_options), + ('highr', '0.4', ext_options), + ('infotheo', '1.2.0', ext_options), + ('lars', '1.2', ext_options), + ('lazy', '1.2-15', ext_options), + ('kernlab', '0.9-20', ext_options), + ('mime', '0.2', ext_options), + ('markdown', '0.7.4', ext_options), + ('mlbench', '2.1-1', ext_options), + ('NLP', '0.1-6', ext_options), + ('mclust', '4.4', ext_options), + ('RANN', '2.4.1', ext_options), + ('rmeta', '2.16', ext_options), + ('segmented', '0.5-1.1', ext_options), + ('som', '0.3-5', ext_options), + ('SuppDists', '1.1-9.1', ext_options), + ('stabledist', '0.6-6', ext_options), + ('survivalROC', '1.0.3', ext_options), + ('pspline', '1.0-16', ext_options), + ('timeDate', '3012.100', ext_options), + ('longmemo', '1.0-0', ext_options), + ('ADGofTest', '0.3', ext_options), + ('ade4', '1.6-2', ext_options), + ('AlgDesign', '1.1-7.3', ext_options), + ('base64enc', '0.1-2', ext_options), + ('BH', '1.55.0-3', ext_options), + ('brew', '1.0-6', ext_options), + ('Brobdingnag', '1.2-4', ext_options), + ('corpcor', '1.6.7', ext_options), + ('longitudinal', '1.1.11', ext_options), + ('checkmate', '1.5.2', ext_options), + ('cubature', '1.1-2', ext_options), + ('DEoptimR', '1.0-2', ext_options), + ('digest', '0.6.8', ext_options), + ('fastmatch', '1.0-4', ext_options), + ('ffbase', '0.11.3', ext_options), + ('iterators', '1.0.7', ext_options), + ('maps', '2.3-9', ext_options), + ('nnls', '1.4', ext_options), + ('sendmailR', '1.2-1', ext_options), + ('spam', '1.0-1', ext_options), + ('subplex', '1.1-4', ext_options), + ('stringr', '0.6.2', ext_options), + ('evaluate', '0.5.5', ext_options), + ('logspline', '2.1.5', ext_options), + ('ncbit', '2013.03.29', ext_options), + ('permute', '0.8-3', ext_options), + ('plotrix', '3.5-11', ext_options), + ('randomForest', '4.6-10', ext_options), + ('scatterplot3d', '0.3-35', ext_options), + ('SparseM', '1.6', ext_options), + ('tripack', '1.3-6', ext_options), + ('irace', '1.06', ext_options), + ('rJava', '0.9-6', ext_options), + ('lattice', '0.20-30', ext_options), + ('RColorBrewer', '1.1-2', ext_options), + ('latticeExtra', '0.6-26', ext_options), + ('Matrix', '1.1-5', ext_options), + ('png', '0.1-7', ext_options), + ('Rcpp', '0.11.5', ext_options), + ('RcppArmadillo', '0.4.650.1.1', ext_options), + ('plyr', '1.8.1', ext_options), + ('pROC', '1.7.3', ext_options), + ('quadprog', '1.5-5', ext_options), + ('BB', '2014.10-1', ext_options), + ('BBmisc', '1.9', ext_options), + ('fail', '1.2', ext_options), + ('rlecuyer', '0.3-3', ext_options), + ('snow', '0.3-13', ext_options), + ('MASS', '7.3-40', ext_options), + ('tree', '1.0-35', ext_options), + ('pls', '2.4-3', ext_options), + ('class', '7.3-12', ext_options), + ('e1071', '1.6-4', ext_options), + ('nnet', '7.3-9', ext_options), + ('nlme', '3.1-120', ext_options), + ('mgcv', '1.8-5', ext_options), + ('minqa', '1.2.4', ext_options), + ('nloptr', '1.0.4', ext_options), + ('RcppEigen', '0.3.2.4.0', ext_options), + ('lme4', '1.1-7', ext_options), + ('pbkrtest', '0.4-2', ext_options), + ('quantreg', '5.11', ext_options), + ('car', '2.0-25', ext_options), + ('colorspace', '1.2-6', ext_options), + ('robustbase', '0.92-3', ext_options), + ('sp', '1.0-17', ext_options), + ('vcd', '1.3-2', ext_options), + ('snowfall', '1.84-6', ext_options), + ('rpart', '4.1-9', ext_options), + ('mice', '2.22', ext_options), + ('urca', '1.2-8', ext_options), + ('fracdiff', '1.4-2', ext_options), + ('logistf', '1.21', ext_options), + ('akima', '0.5-11', ext_options), + ('bitops', '1.0-6', ext_options), + ('boot', '1.3-15', ext_options), + ('mixtools', '1.0.2', ext_options), + ('cluster', '2.0.1', ext_options), + ('gclus', '1.3.1', ext_options), + ('coda', '0.17-1', ext_options), + ('codetools', '0.2-11', ext_options), + ('foreach', '1.4.2', ext_options), + ('doMC', '1.3.3', ext_options), + ('DBI', '0.3.1', ext_options), + ('foreign', '0.8-63', ext_options), + ('survival', '2.38-1', ext_options), + ('gam', '1.09.1', ext_options), + ('gamlss.data', '4.2-7', ext_options), + ('gamlss.dist', '4.3-4', ext_options), + ('hwriter', '1.3.2', ext_options), + ('KernSmooth', '2.23-14', ext_options), + ('zoo', '1.7-12', ext_options), + ('xts', '0.9-7', ext_options), + ('TTR', '0.22-0', ext_options), + ('quantmod', '0.4-4', ext_options), + ('lmtest', '0.9-33', ext_options), + ('mnormt', '1.5-1', ext_options), + ('mvtnorm', '1.0-2', ext_options), + ('pcaPP', '1.9-60', ext_options), + ('numDeriv', '2012.9-1', ext_options), + ('lava', '1.4.0', ext_options), + ('prodlim', '1.5.1', ext_options), + ('pscl', '1.4.8', ext_options), + ('RSQLite', '1.0.0', ext_options), + ('BatchJobs', '1.6', ext_options), + ('sandwich', '2.3-2', ext_options), + ('sfsmisc', '1.0-27', ext_options), + ('spatial', '7.3-9', ext_options), + ('VGAM', '0.9-7', ext_options), + ('waveslim', '1.7.5', ext_options), + ('xtable', '1.7-4', ext_options), + ('profileModel', '0.5-9', ext_options), + ('brglm', '0.5-9', ext_options), + ('deSolve', '1.11', ext_options), + ('tseriesChaos', '0.1-13', ext_options), + ('tseries', '0.10-34', ext_options), + ('fastICA', '1.2-0', ext_options), + ('R.methodsS3', '1.7.0', ext_options), + ('R.oo', '1.19.0', ext_options), + ('cgdsr', '1.1.33', ext_options), + ('R.utils', '2.0.0', ext_options), + ('R.matlab', '3.2.0', ext_options), + ('BiocGenerics', '0.12.1', bioconductor_options), + ('Biobase', '2.26.0', bioconductor_options), + ('S4Vectors', '0.4.0', bioconductor_options), + ('IRanges', '2.0.1', bioconductor_options), + ('GenomeInfoDb', '1.2.4', bioconductor_options), + ('AnnotationDbi', '1.28.1', bioconductor_options), + ('XVector', '0.6.0', bioconductor_options), + ('zlibbioc', '1.12.0', bioconductor_options), + ('Biostrings', '2.34.1', bioconductor_options), + ('GenomicRanges', '1.18.4', bioconductor_options), + ('Rsamtools', '1.18.3', bioconductor_options), + ('BiocParallel', '1.0.3', bioconductor_options), + ('GenomicAlignments', '1.2.2', bioconductor_options), + ('ShortRead', '1.24.0', bioconductor_options), + ('graph', '1.44.1', bioconductor_options), + ('gbm', '2.1.1', ext_options), + ('dichromat', '2.0-0', ext_options), + ('Formula', '1.2-0', ext_options), + ('acepack', '1.3-3.3', ext_options), + ('gtable', '0.1.2', ext_options), + ('reshape2', '1.4.1', ext_options), + ('proto', '0.3-10', ext_options), + ('munsell', '0.4.2', ext_options), + ('labeling', '0.3', ext_options), + ('scales', '0.2.4', ext_options), + ('ggplot2', '1.0.1', ext_options), + ('Hmisc', '3.15-0', ext_options), + ('fastcluster', '1.1.16', ext_options), + ('chron', '2.3-45', ext_options), + ('data.table', '1.9.4', ext_options), + ('igraph', '0.7.1', ext_options), + ('GeneNet', '1.2.12', ext_options), + ('ape', '3.2', ext_options), + ('htmltools', '0.2.6', ext_options), + ('RJSONIO', '1.3-0', ext_options), + ('caTools', '1.17.1', ext_options), + ('gplots', '2.16.0', ext_options), + ('ROCR', '1.0-5', ext_options), + ('httpuv', '1.3.2', ext_options), + ('R6', '2.0.1', ext_options), + ('shiny', '0.11.1', ext_options), + ('adegenet', '1.4-2', ext_options), + ('phylobase', '0.6.8', ext_options), + ('adephylo', '1.1-6', ext_options), + ('animation', '2.3', ext_options), + ('bigmemory.sri', '0.1.3', ext_options), + ('bigmemory', '4.4.6', ext_options), + ('calibrate', '1.7.2', ext_options), + ('clusterGeneration', '1.3.4', ext_options), + ('raster', '2.3-33', ext_options), + ('dismo', '1.0-12', ext_options), + ('expm', '0.99-1.1', ext_options), + ('extrafontdb', '1.0', ext_options), + ('Rttf2pt1', '1.3.3', ext_options), + ('extrafont', '0.17', ext_options), + ('fields', '8.2-1', 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ext_options), + ('RNASeqPower', '1.6.0', bioconductor_options), + ('VennDiagram', '1.6.9', ext_options), + ('xlsxjars', '0.6.1', ext_options), + ('xlsx', '0.5.7', ext_options), + ('Rsubread', '1.16.1', bioconductor_options), +] + +moduleclass = 'lang' + -- GitLab From df014f2d05061bc70c5d3875eb183d31ba6cfd9d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Mar 2015 10:41:14 +0100 Subject: [PATCH 0837/1217] fix tiny remark --- easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb index 9ff1e63f74..2e15247124 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb @@ -378,4 +378,3 @@ exts_list = [ ] moduleclass = 'lang' - -- GitLab From 953b574b3c30ddd17c44a2248503989dd01dd972 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Mar 2015 14:19:39 +0100 Subject: [PATCH 0838/1217] bump libXp to v1.0.3 + update deps --- .../inputproto/inputproto-2.3-intel-2015a.eb | 19 ---------- .../l/libX11/libX11-1.6.1-intel-2015a.eb | 37 ------------------- ...2015a.eb => libXdmcp-1.1.2-intel-2015a.eb} | 4 +- ...-2015a.eb => libXext-1.3.3-intel-2015a.eb} | 10 ++--- ...el-2015a.eb => libXp-1.0.3-intel-2015a.eb} | 8 ++-- .../libxcb-1.8-intel-2015a-Python-2.7.8.eb | 35 ------------------ .../xcb-proto-1.7-intel-2015a-Python-2.7.8.eb | 27 -------------- .../xextproto/xextproto-7.2.1-intel-2015a.eb | 25 ------------- .../x/xproto/xproto-7.0.26-intel-2015a.eb | 24 ------------ 9 files changed, 11 insertions(+), 178 deletions(-) delete mode 100644 easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2015a.eb delete mode 100644 easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2015a.eb rename easybuild/easyconfigs/l/libXdmcp/{libXdmcp-1.1.1-intel-2015a.eb => libXdmcp-1.1.2-intel-2015a.eb} (93%) rename easybuild/easyconfigs/l/libXext/{libXext-1.3.2-intel-2015a.eb => libXext-1.3.3-intel-2015a.eb} (83%) rename easybuild/easyconfigs/l/libXp/{libXp-1.0.2-intel-2015a.eb => libXp-1.0.3-intel-2015a.eb} (81%) delete mode 100644 easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2015a-Python-2.7.8.eb delete mode 100644 easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2015a-Python-2.7.8.eb delete mode 100644 easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2015a.eb delete mode 100644 easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2015a.eb diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2015a.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2015a.eb deleted file mode 100644 index 0437a042db..0000000000 --- a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2015a.eb +++ /dev/null @@ -1,19 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'inputproto' -version = '2.3' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X.org InputProto protocol headers.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] - -sanity_check_paths = { - 'files': ['include/X11/extensions/%s' % x for x in ['XI2.h', 'XI.h', 'XIproto.h', 'XI2proto.h']], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2015a.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2015a.eb deleted file mode 100644 index 70b695c73d..0000000000 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2015a.eb +++ /dev/null @@ -1,37 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libX11' -version = '1.6.1' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """X11 client-side library""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] - -pythonversion = '-Python-2.7.8' -builddependencies = [ - ('xextproto', '7.2.1'), - ('xcb-proto', '1.7', pythonversion), - ('kbproto', '1.0.6'), - ('inputproto', '2.3'), - ('xproto', '7.0.26'), -] - -dependencies = [ - ('libxcb', '1.8', pythonversion), - ('xtrans', '1.3.4'), -] - -sanity_check_paths = { - 'files': ['include/X11/%s' % x for x in [ - 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', - 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', - ] - ], - 'dirs': [], -} - -moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2015a.eb b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-intel-2015a.eb similarity index 93% rename from easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2015a.eb rename to easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-intel-2015a.eb index f1b75921a7..0bcd783d04 100644 --- a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-intel-2015a.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'libXdmcp' -version = '1.1.1' +version = '1.1.2' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """The libXdmcp package contains a library implementing the X Display Manager Control Protocol. This is @@ -15,7 +15,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] builddependencies = [ - ('xproto', '7.0.26'), + ('xproto', '7.0.27'), ] sanity_check_paths = { 'files': ['lib/%s' % x for x in ['%(name)s.a', '%(name)s.so']], diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2015a.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015a.eb similarity index 83% rename from easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2015a.eb rename to easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015a.eb index b57d363d51..7eaad7c80b 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015a.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'libXext' -version = '1.3.2' +version = '1.3.3' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """Common X Extensions library""" @@ -13,13 +13,13 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] dependencies = [ - ('libX11', '1.6.1'), - ('libXdmcp', '1.1.1'), + ('libX11', '1.6.3', '-Python-2.7.9'), + ('libXdmcp', '1.1.2'), ] builddependencies = [ - ('xproto','7.0.26'), - ('xextproto', '7.2.1'), + ('xproto', '7.0.27'), + ('xextproto', '7.3.0'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-intel-2015a.eb b/easybuild/easyconfigs/l/libXp/libXp-1.0.3-intel-2015a.eb similarity index 81% rename from easybuild/easyconfigs/l/libXp/libXp-1.0.2-intel-2015a.eb rename to easybuild/easyconfigs/l/libXp/libXp-1.0.3-intel-2015a.eb index 469ffffd9b..b1de22d8c7 100644 --- a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libXp/libXp-1.0.3-intel-2015a.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'libXp' -version = '1.0.2' +version = '1.0.3' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """libXp provides the X print library.""" @@ -13,13 +13,13 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] builddependencies = [ - ('xextproto', '7.2.1'), + ('xextproto', '7.3.0'), ('printproto', '1.0.5'), ] dependencies = [ - ('libX11', '1.6.1'), - ('libXext', '1.3.2'), + ('libX11', '1.6.3', '-Python-2.7.9'), + ('libXext', '1.3.3'), ('libXau', '1.0.8'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2015a-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2015a-Python-2.7.8.eb deleted file mode 100644 index 3343368288..0000000000 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2015a-Python-2.7.8.eb +++ /dev/null @@ -1,35 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxcb' -version = '1.8' - -homepage = 'http://xcb.freedesktop.org/' -description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, - latency hiding, direct access to the protocol, improved threading support, and extensibility.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -source_urls = ['http://xcb.freedesktop.org/dist/'] -sources = [SOURCELOWER_TAR_GZ] - -patches = ['libxcb-no-pthread-stubs.patch'] - -python = 'Python' -pyver = '2.7.8' -versionsuffix = '-%s-%s' % (python, pyver) -dependencies = [ - (python, pyver), - ('xcb-proto', '1.7', versionsuffix), -] - -preconfigopts = "rm -r aclocal.m4 configure Makefile.in ltmain.sh && ./autogen.sh && " - -sanity_check_paths = { - 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", - "-randr", "-record", "-render", "-res", "-screensaver", - "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", - "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], - 'dirs': ['include/xcb', 'lib/pkgconfig'], -} - -moduleclass = 'lib' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2015a-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2015a-Python-2.7.8.eb deleted file mode 100644 index 1a9784f1e8..0000000000 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2015a-Python-2.7.8.eb +++ /dev/null @@ -1,27 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'xcb-proto' -version = '1.7' - -homepage = 'http://xcb.freedesktop.org/' -description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, - latency hiding, direct access to the protocol, improved threading support, and extensibility.""" - -source_urls = ['http://xcb.freedesktop.org/dist/'] -sources = [SOURCELOWER_TAR_GZ] - -toolchain = {'name': 'intel', 'version': '2015a'} - -python = 'Python' -pyver = '2.7.8' -versionsuffix = '-%s-%s' % (python, pyver) -dependencies = [(python, pyver)] - -pyshortver = '.'.join(pyver.split('.')[0:2]) - -sanity_check_paths = { - 'files': ['lib/pkgconfig/xcb-proto.pc'], - 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] -} - -moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2015a.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2015a.eb deleted file mode 100644 index e1651c87e5..0000000000 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2015a.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'xextproto' -version = '7.2.1' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = """XExtProto protocol headers.""" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'optarch': True} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] - -sanity_check_paths = { - 'files': ['include/X11/extensions/%s' % x for x in [ - 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', - 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', - 'xtestconst.h', 'xtestext1proto.h' - ] - ], - 'dirs': [] -} - -moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2015a.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2015a.eb deleted file mode 100644 index 5c1117654b..0000000000 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2015a.eb +++ /dev/null @@ -1,24 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'xproto' -version = '7.0.26' - -homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = "X protocol and ancillary headers" - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'optarch': True} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] - -sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', - 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', - 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', - 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', - 'XWDFile.h', 'Xwinsock.h']], - 'dirs' : [] -} - -moduleclass = 'devel' -- GitLab From c0b7ca3a828a7923499659d55bec55737a6538b3 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Mar 2015 14:24:01 +0100 Subject: [PATCH 0839/1217] add missing libX11 easyconfig --- .../libX11-1.6.3-intel-2015a-Python-2.7.9.eb | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..aec9e4570d --- /dev/null +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'libX11' +version = '1.6.3' +versionsuffix = '-Python-2.7.9' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('xextproto', '7.3.0'), + ('xcb-proto', '1.11', versionsuffix), + ('inputproto', '2.3.1'), + ('xproto', '7.0.27'), + ('kbproto', '1.0.6'), +] + +dependencies = [ + ('libxcb', '1.11', versionsuffix), + ('xtrans', '1.3.5'), +] + +sanity_check_paths = { + 'files': ['include/X11/%s' % x for x in [ + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' -- GitLab From aeba82b3d35e94874e52a98e68e70c41e5afbe7f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Mar 2015 16:22:36 +0100 Subject: [PATCH 0840/1217] bump version of AnnotationDbi --- easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb index 2e15247124..6cdafd6edc 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb @@ -220,7 +220,7 @@ exts_list = [ ('S4Vectors', '0.4.0', bioconductor_options), ('IRanges', '2.0.1', bioconductor_options), ('GenomeInfoDb', '1.2.4', bioconductor_options), - ('AnnotationDbi', '1.28.1', bioconductor_options), + ('AnnotationDbi', '1.28.2', bioconductor_options), ('XVector', '0.6.0', bioconductor_options), ('zlibbioc', '1.12.0', bioconductor_options), ('Biostrings', '2.34.1', bioconductor_options), -- GitLab From 774c95f2bafee2da8478c530d0813ab7ee6ca831 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Mar 2015 17:16:37 +0100 Subject: [PATCH 0841/1217] fix remarks --- .../easyconfigs/l/libXext/libXext-1.3.3-intel-2015a.eb | 10 +++++----- .../easyconfigs/l/libXp/libXp-1.0.3-intel-2015a.eb | 1 + 2 files changed, 6 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015a.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015a.eb index 7eaad7c80b..7499144fec 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015a.eb @@ -12,16 +12,16 @@ toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] -dependencies = [ - ('libX11', '1.6.3', '-Python-2.7.9'), - ('libXdmcp', '1.1.2'), -] - builddependencies = [ ('xproto', '7.0.27'), ('xextproto', '7.3.0'), ] +dependencies = [ + ('libX11', '1.6.3', '-Python-2.7.9'), + ('libXdmcp', '1.1.2'), +] + sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', diff --git a/easybuild/easyconfigs/l/libXp/libXp-1.0.3-intel-2015a.eb b/easybuild/easyconfigs/l/libXp/libXp-1.0.3-intel-2015a.eb index b1de22d8c7..fe0d5183a5 100644 --- a/easybuild/easyconfigs/l/libXp/libXp-1.0.3-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libXp/libXp-1.0.3-intel-2015a.eb @@ -22,6 +22,7 @@ dependencies = [ ('libXext', '1.3.3'), ('libXau', '1.0.8'), ] + sanity_check_paths = { 'files': ['lib/%s' % x for x in ['libXp.a', 'libXp.so']], 'dirs': [], -- GitLab From 5a072e826932fff76160f8bba7574514ee3df954 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Mar 2015 17:33:14 +0100 Subject: [PATCH 0842/1217] bump libXp to v1.0.3 + update deps --- .../a/Autoconf/Autoconf-2.69-goolf-1.5.14.eb | 25 ----- .../a/Automake/Automake-1.14-goolf-1.5.14.eb | 33 ------- ...14.eb => inputproto-2.3.1-goolf-1.5.14.eb} | 2 +- ...libX11-1.6.3-goolf-1.5.14-Python-2.7.9.eb} | 16 ++-- .../l/libXau/libXau-1.0.8-goolf-1.5.14.eb | 2 +- ...5.14.eb => libXdmcp-1.1.2-goolf-1.5.14.eb} | 4 +- ....5.14.eb => libXext-1.3.3-goolf-1.5.14.eb} | 10 +- ...-1.5.14.eb => libXp-1.0.3-goolf-1.5.14.eb} | 8 +- .../l/libtool/libtool-2.4.5-goolf-1.5.14.eb | 17 ---- ... libxcb-1.11-goolf-1.5.14-Python-2.7.9.eb} | 15 +-- .../m/M4/M4-1.4.17-goolf-1.5.14.eb | 23 ----- .../p/Python/Python-2.7.8-goolf-1.5.14.eb | 95 ------------------- ...b-proto-1.11-goolf-1.5.14-Python-2.7.9.eb} | 4 +- ....14.eb => xextproto-7.3.0-goolf-1.5.14.eb} | 2 +- ....5.14.eb => xproto-7.0.27-goolf-1.5.14.eb} | 2 +- ...1.5.14.eb => xtrans-1.3.5-goolf-1.5.14.eb} | 2 +- 16 files changed, 29 insertions(+), 231 deletions(-) delete mode 100644 easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.5.14.eb delete mode 100644 easybuild/easyconfigs/a/Automake/Automake-1.14-goolf-1.5.14.eb rename easybuild/easyconfigs/i/inputproto/{inputproto-2.3-goolf-1.5.14.eb => inputproto-2.3.1-goolf-1.5.14.eb} (96%) rename easybuild/easyconfigs/l/libX11/{libX11-1.6.1-goolf-1.5.14.eb => libX11-1.6.3-goolf-1.5.14-Python-2.7.9.eb} (72%) rename easybuild/easyconfigs/l/libXdmcp/{libXdmcp-1.1.1-goolf-1.5.14.eb => libXdmcp-1.1.2-goolf-1.5.14.eb} (93%) rename easybuild/easyconfigs/l/libXext/{libXext-1.3.2-goolf-1.5.14.eb => libXext-1.3.3-goolf-1.5.14.eb} (83%) rename easybuild/easyconfigs/l/libXp/{libXp-1.0.2-goolf-1.5.14.eb => libXp-1.0.3-goolf-1.5.14.eb} (81%) delete mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.5-goolf-1.5.14.eb rename easybuild/easyconfigs/l/libxcb/{libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb => libxcb-1.11-goolf-1.5.14-Python-2.7.9.eb} (79%) delete mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.17-goolf-1.5.14.eb delete mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb rename easybuild/easyconfigs/x/xcb-proto/{xcb-proto-1.7-goolf-1.5.14-Python-2.7.8.eb => xcb-proto-1.11-goolf-1.5.14-Python-2.7.9.eb} (95%) rename easybuild/easyconfigs/x/xextproto/{xextproto-7.2.1-goolf-1.5.14.eb => xextproto-7.3.0-goolf-1.5.14.eb} (97%) rename easybuild/easyconfigs/x/xproto/{xproto-7.0.26-goolf-1.5.14.eb => xproto-7.0.27-goolf-1.5.14.eb} (97%) rename easybuild/easyconfigs/x/xtrans/{xtrans-1.3.4-goolf-1.5.14.eb => xtrans-1.3.5-goolf-1.5.14.eb} (97%) diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.5.14.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.5.14.eb deleted file mode 100644 index 3ca1111122..0000000000 --- a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-goolf-1.5.14.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Autoconf' -version = '2.69' - -homepage = 'http://www.gnu.org/software/autoconf/' -description = """Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure - software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual - user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating - system features that the package can use, in the form of M4 macro calls.""" - -toolchain = {'name': 'goolf', 'version': '1.5.14'} - -source_urls = [GNU_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [('M4', '1.4.16')] - -sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", - "autoscan", "autoupdate", "ifnames"]], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.14-goolf-1.5.14.eb b/easybuild/easyconfigs/a/Automake/Automake-1.14-goolf-1.5.14.eb deleted file mode 100644 index 64606d8726..0000000000 --- a/easybuild/easyconfigs/a/Automake/Automake-1.14-goolf-1.5.14.eb +++ /dev/null @@ -1,33 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA -# Authors:: Fotis Georgatos -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/ -## - -easyblock = 'ConfigureMake' - -name = 'Automake' -version = "1.14" - -homepage = 'http://www.gnu.org/software/automake/automake.html' -description = "Automake: GNU Standards-compliant Makefile generator" - -toolchain = {'name': 'goolf', 'version': '1.5.14'} - -source_urls = [GNU_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -dependencies = [('Autoconf', '2.69')] - -sanity_check_paths = { - 'files': ['bin/automake', 'bin/aclocal'], - 'dirs': [] -} - -moduleclass = 'devel' diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-goolf-1.5.14.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3.1-goolf-1.5.14.eb similarity index 96% rename from easybuild/easyconfigs/i/inputproto/inputproto-2.3-goolf-1.5.14.eb rename to easybuild/easyconfigs/i/inputproto/inputproto-2.3.1-goolf-1.5.14.eb index 56a7e864e0..66fc05b6d4 100644 --- a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3.1-goolf-1.5.14.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'inputproto' -version = '2.3' +version = '2.3.1' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """X.org InputProto protocol headers.""" diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.3-goolf-1.5.14-Python-2.7.9.eb similarity index 72% rename from easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.5.14.eb rename to easybuild/easyconfigs/l/libX11/libX11-1.6.3-goolf-1.5.14-Python-2.7.9.eb index 09434cd3d2..7e6d887343 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.3-goolf-1.5.14-Python-2.7.9.eb @@ -1,7 +1,8 @@ easyblock = 'ConfigureMake' name = 'libX11' -version = '1.6.1' +version = '1.6.3' +versionsuffix = '-Python-2.7.9' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """X11 client-side library""" @@ -11,18 +12,17 @@ toolchain = {'name': 'goolf', 'version': '1.5.14'} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] -pythonversion = '-Python-2.7.8' builddependencies = [ - ('xextproto', '7.2.1'), - ('xcb-proto', '1.7', pythonversion), + ('xextproto', '7.3.0'), + ('xcb-proto', '1.11', versionsuffix), + ('inputproto', '2.3.1'), + ('xproto', '7.0.27'), ('kbproto', '1.0.6'), - ('inputproto', '2.3'), - ('xproto', '7.0.26'), ] dependencies = [ - ('libxcb', '1.8', pythonversion), - ('xtrans', '1.3.4'), + ('libxcb', '1.11', versionsuffix), + ('xtrans', '1.3.5'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.5.14.eb index e1924b4781..2de39a52c7 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.5.14.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] dependencies = [ - ('xproto', '7.0.26'), + ('xproto', '7.0.27'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-goolf-1.5.14.eb similarity index 93% rename from easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-goolf-1.5.14.eb rename to easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-goolf-1.5.14.eb index c63e8fb713..dfac851674 100644 --- a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-goolf-1.5.14.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'libXdmcp' -version = '1.1.1' +version = '1.1.2' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """The libXdmcp package contains a library implementing the X Display Manager Control Protocol. This is @@ -15,7 +15,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] builddependencies = [ - ('xproto', '7.0.26'), + ('xproto', '7.0.27'), ] sanity_check_paths = { 'files': ['lib/%s' % x for x in ['%(name)s.a', '%(name)s.so']], diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-goolf-1.5.14.eb similarity index 83% rename from easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.5.14.eb rename to easybuild/easyconfigs/l/libXext/libXext-1.3.3-goolf-1.5.14.eb index 730c692843..7e3f435c5b 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-goolf-1.5.14.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'libXext' -version = '1.3.2' +version = '1.3.3' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """Common X Extensions library""" @@ -13,13 +13,13 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] dependencies = [ - ('libX11', '1.6.1'), - ('libXdmcp', '1.1.1'), + ('libX11', '1.6.3', '-Python-2.7.9'), + ('libXdmcp', '1.1.2'), ] builddependencies = [ - ('xproto','7.0.26'), - ('xextproto', '7.2.1'), + ('xproto', '7.0.27'), + ('xextproto', '7.3.0'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXp/libXp-1.0.3-goolf-1.5.14.eb similarity index 81% rename from easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.5.14.eb rename to easybuild/easyconfigs/l/libXp/libXp-1.0.3-goolf-1.5.14.eb index 2b397002a4..9da42c6bbb 100644 --- a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libXp/libXp-1.0.3-goolf-1.5.14.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'libXp' -version = '1.0.2' +version = '1.0.3' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """libXp provides the X print library.""" @@ -13,13 +13,13 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] builddependencies = [ - ('xextproto', '7.2.1'), + ('xextproto', '7.3.0'), ('printproto', '1.0.5'), ] dependencies = [ - ('libX11', '1.6.1'), - ('libXext', '1.3.2'), + ('libX11', '1.6.3', '-Python-2.7.9'), + ('libXext', '1.3.3'), ('libXau', '1.0.8'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-goolf-1.5.14.eb deleted file mode 100644 index c98f951ee7..0000000000 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-goolf-1.5.14.eb +++ /dev/null @@ -1,17 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libtool' -version = '2.4.5' - -homepage = 'http://www.gnu.org/software/libtool' -description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries - behind a consistent, portable interface.""" - -toolchain = {'name': 'goolf', 'version': '1.5.14'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://ftp.gnu.org/gnu/%s' % name.lower()] - -builddependencies = [('M4', '1.4.17')] - -moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.11-goolf-1.5.14-Python-2.7.9.eb similarity index 79% rename from easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb rename to easybuild/easyconfigs/l/libxcb/libxcb-1.11-goolf-1.5.14-Python-2.7.9.eb index 497d6bc032..4b1ba8a05b 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.11-goolf-1.5.14-Python-2.7.9.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'libxcb' -version = '1.8' +version = '1.11' homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, @@ -14,23 +14,14 @@ sources = [SOURCELOWER_TAR_GZ] patches = ['libxcb-no-pthread-stubs.patch'] -builddependencies = [ - ('M4', '1.4.17'), - ('Automake', '1.14'), - ('Autoconf', '2.69'), - ('libtool', '2.4.5'), -] - python = 'Python' -pyver = '2.7.8' +pyver = '2.7.9' versionsuffix = '-%s-%s' % (python, pyver) dependencies = [ (python, pyver), - ('xcb-proto', '1.7', versionsuffix), + ('xcb-proto', '1.11', versionsuffix), ] -preconfigopts = "rm -r aclocal.m4 configure Makefile.in ltmain.sh && ./autogen.sh && " - sanity_check_paths = { 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", "-randr", "-record", "-render", "-res", "-screensaver", diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-goolf-1.5.14.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-goolf-1.5.14.eb deleted file mode 100644 index 39d957f556..0000000000 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-goolf-1.5.14.eb +++ /dev/null @@ -1,23 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'M4' -version = '1.4.17' - -homepage = 'http://www.gnu.org/software/m4/m4.html' -description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible - although it has some extensions (for example, handling more than 9 positional parameters to macros). - GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" - -toolchain = {'name': 'goolf', 'version': '1.5.14'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [GNU_SOURCE] - -configopts = "--enable-cxx" - -sanity_check_paths = { - 'files': ["bin/m4"], - 'dirs': [], -} - -moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb deleted file mode 100644 index df184b1c3e..0000000000 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb +++ /dev/null @@ -1,95 +0,0 @@ -name = 'Python' -version = '2.7.8' - -homepage = 'http://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." - -toolchain = {'name': 'goolf', 'version': '1.5.14'} -toolchainopts = {'pic': True, 'opt': True, 'optarch': True} - -numpyversion = '1.8.1' -scipyversion = '0.14.0' - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# libffi build in python is still broken, see http://bugs.python.org/issue4130 -patches = ['python-2.7_libffi-include-xmmintrin.patch'] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev')] - -# order is important! -# Version updated 08/JULY/2014 -exts_list = [ - ('setuptools', '5.4.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], - }), - ('pip', '1.5.6', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], - }), - ('nose', '1.3.3', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], - }), - ('numpy', numpyversion, { - 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': [ - 'numpy-%s-mkl.patch' % numpyversion, - ], - }), - ('scipy', scipyversion, { - 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], - }), - ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], - }), - ('mpi4py', '1.3.1', { - 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], - }), - ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], - }), - ('argparse', '1.2.1', { - 'source_urls': ['http://argparse.googlecode.com/files/'], - }), - ('lockfile', '0.9.1', { - 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], - }), - ('Cython', '0.20.2', { - 'source_urls': ['http://www.cython.org/release/'], - }), - ('dateutil', '2.2', { - 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], - }), - ('deap', '1.0.1', { - 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - }), - ('decorator', '3.4.0', { - 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], - }), - ('arff', '2.0.1', { - 'source_tmpl': 'liac-%(name)s-%(version)s.zip', - 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], - }), - ('pycrypto', '2.6.1', { - 'modulename': 'Crypto', - 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], - }), - ('paramiko', '1.14.0', { - 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.2', { - 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], - }), -] - -moduleclass = 'lang' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.5.14-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-goolf-1.5.14-Python-2.7.9.eb similarity index 95% rename from easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.5.14-Python-2.7.8.eb rename to easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-goolf-1.5.14-Python-2.7.9.eb index 2c38355a2b..5321244281 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.5.14-Python-2.7.8.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-goolf-1.5.14-Python-2.7.9.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'xcb-proto' -version = '1.7' +version = '1.11' homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, @@ -13,7 +13,7 @@ source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] python = 'Python' -pyver = '2.7.8' +pyver = '2.7.9' versionsuffix = '-%s-%s' % (python, pyver) dependencies = [(python, pyver)] diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.5.14.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-goolf-1.5.14.eb similarity index 97% rename from easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.5.14.eb rename to easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-goolf-1.5.14.eb index 6b4cef16fe..19c9e6fc6f 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-goolf-1.5.14.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'xextproto' -version = '7.2.1' +version = '7.3.0' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """XExtProto protocol headers.""" diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-goolf-1.5.14.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.27-goolf-1.5.14.eb similarity index 97% rename from easybuild/easyconfigs/x/xproto/xproto-7.0.26-goolf-1.5.14.eb rename to easybuild/easyconfigs/x/xproto/xproto-7.0.27-goolf-1.5.14.eb index a5635671e9..818673c9f9 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.27-goolf-1.5.14.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'xproto' -version = '7.0.26' +version = '7.0.27' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = "X protocol and ancillary headers" diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-goolf-1.5.14.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-goolf-1.5.14.eb similarity index 97% rename from easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-goolf-1.5.14.eb rename to easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-goolf-1.5.14.eb index f6435d5d2b..2286309947 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-goolf-1.5.14.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'xtrans' -version = '1.3.4' +version = '1.3.5' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """xtrans includes a number of routines to make X implementations transport-independent; -- GitLab From bd9a19cadab4d345c16d6c14cece430b868786e7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Mar 2015 18:18:46 +0100 Subject: [PATCH 0843/1217] fix remarks --- .../l/libXext/libXext-1.3.3-goolf-1.5.14.eb | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.3-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-goolf-1.5.14.eb index 7e3f435c5b..63124eca9a 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-goolf-1.5.14.eb @@ -12,16 +12,16 @@ toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] -dependencies = [ - ('libX11', '1.6.3', '-Python-2.7.9'), - ('libXdmcp', '1.1.2'), -] - builddependencies = [ ('xproto', '7.0.27'), ('xextproto', '7.3.0'), ] +dependencies = [ + ('libX11', '1.6.3', '-Python-2.7.9'), + ('libXdmcp', '1.1.2'), +] + sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', -- GitLab From 61966bab2cefc75e0ea738a8959439450a9bb84e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 23 Mar 2015 21:13:28 +0100 Subject: [PATCH 0844/1217] drop unrequired patch file for libxcb --- .../l/libxcb/libxcb-1.11-goolf-1.5.14-Python-2.7.9.eb | 2 -- 1 file changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.11-goolf-1.5.14-Python-2.7.9.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.11-goolf-1.5.14-Python-2.7.9.eb index 4b1ba8a05b..bd5e7ed56d 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.11-goolf-1.5.14-Python-2.7.9.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.11-goolf-1.5.14-Python-2.7.9.eb @@ -12,8 +12,6 @@ toolchain = {'name': 'goolf', 'version': '1.5.14'} source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] -patches = ['libxcb-no-pthread-stubs.patch'] - python = 'Python' pyver = '2.7.9' versionsuffix = '-%s-%s' % (python, pyver) -- GitLab From 2542456c9b5b8ecc6764519276aa7a90f2e5e2c2 Mon Sep 17 00:00:00 2001 From: "tmwsiy2012@gmail.com" Date: Mon, 23 Mar 2015 19:27:51 -0400 Subject: [PATCH 0845/1217] first draft for R-3.1.3-foss-2015a.eb --- easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb index 9970cb1722..6af8bc63b2 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb @@ -220,7 +220,7 @@ exts_list = [ ('S4Vectors', '0.4.0', bioconductor_options), ('IRanges', '2.0.1', bioconductor_options), ('GenomeInfoDb', '1.2.4', bioconductor_options), - ('AnnotationDbi', '1.28.1', bioconductor_options), + ('AnnotationDbi', '1.28.2', bioconductor_options), ('XVector', '0.6.0', bioconductor_options), ('zlibbioc', '1.12.0', bioconductor_options), ('Biostrings', '2.34.1', bioconductor_options), -- GitLab From b87d628c908caaf967f4d9eb9c4e81fffb15b115 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 10:58:34 +0100 Subject: [PATCH 0846/1217] bump libXp version --- .../a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb index 83a0bf5863..c680dc7f26 100644 --- a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb +++ b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-goolf-1.5.14-20141023.eb @@ -20,7 +20,7 @@ dependencies = [ ('R', '3.1.2'), ('PyQt', '4.11.3', '-Python-2.7.9'), ('tcsh', '6.18.01'), - ('libXp', '1.0.2'), + ('libXp', '1.0.3'), ] modextrapaths = {'PATH': ['']} -- GitLab From 07c8e3063bc44cf2cdcbe51ef7cf1c7f70f3f139 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 11:34:03 +0100 Subject: [PATCH 0847/1217] bump Xmipp deps to latest version --- .../LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb | 31 +++++++++++++++++++ .../libjpeg-turbo-1.4.0-intel-2015a.eb | 2 +- .../x/Xmipp/Xmipp-3.1-intel-2015a.eb | 8 ++--- 3 files changed, 36 insertions(+), 5 deletions(-) create mode 100644 easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb new file mode 100644 index 0000000000..8e0c167845 --- /dev/null +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## +easyblock = 'ConfigureMake' + +name = 'LibTIFF' +# misleading name, this is a 'stable' release +version = '4.0.4beta' + +homepage = 'http://www.remotesensing.org/libtiff/' +description = "tiff: Library and tools for reading and writing TIFF data files" + +source_urls = ['ftp://ftp.remotesensing.org/pub/libtiff/'] +sources = ['tiff-%(version)s.tar.gz'] + +toolchain = {'name': 'intel', 'version': '2015a'} + +sanity_check_paths = { + 'files': ['bin/tiffinfo'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015a.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015a.eb index 639a4e904b..765e1c4ea1 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015a.eb @@ -3,7 +3,7 @@ easyblock = 'ConfigureMake' name = 'libjpeg-turbo' version = '1.4.0' -homepage = 'http://sourceforge.net/libjpeg-turbo/' +homepage = 'http://sourceforge.net/projects/libjpeg-turbo/' description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. """ diff --git a/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb b/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb index 1e915813e0..c8872fd3a8 100644 --- a/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb +++ b/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb @@ -12,11 +12,11 @@ toolchain = {'name': 'intel', 'version': '2015a'} patches = ['sqlite_imports.patch', 'library_imports.patch'] dependencies = [ - ('Python', '2.7.9'), # Make sure Python has a working SQlite in it, the install step creates a sqlite db. - ('freetype', '2.5.3'), - ('LibTIFF', '4.0.3'), + ('Python', '2.7.9'), # should have a working sqlite, and provide numpy + ('freetype', '2.5.5'), + ('LibTIFF', '4.0.4beta'), ('HDF5', '1.8.14', '-gpfs'), - ('libjpeg-turbo', '1.3.1'), + ('libjpeg-turbo', '1.4.0'), ('FFTW', '3.3.4'), ] -- GitLab From 014c825f23453408344926d5e791f0a958dea335 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 11:56:41 +0100 Subject: [PATCH 0848/1217] add http download URL for LibTIFF --- .../easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb | 5 ++++- .../easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb | 5 ++++- easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb | 5 ++++- easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb | 5 ++++- .../easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb | 5 ++++- 5 files changed, 20 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb index 64a60f0f66..9875af8f63 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-goolf-1.4.10.eb @@ -18,7 +18,10 @@ version = '4.0.3' homepage = 'http://www.remotesensing.org/libtiff/' description = "tiff: Library and tools for reading and writing TIFF data files" -source_urls = ['ftp://ftp.remotesensing.org/pub/libtiff/'] +source_urls = [ + 'http://download.osgeo.org/libtiff/', + 'ftp://ftp.remotesensing.org/pub/libtiff/', +] sources = ['tiff-%(version)s.tar.gz'] toolchain = {'name': 'goolf', 'version': '1.4.10'} diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb index ea5c5f104f..3fa3aba61e 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-4.1.13.eb @@ -18,7 +18,10 @@ version = '4.0.3' homepage = 'http://www.remotesensing.org/libtiff/' description = "tiff: Library and tools for reading and writing TIFF data files" -source_urls = ['ftp://ftp.remotesensing.org/pub/libtiff/'] +source_urls = [ + 'http://download.osgeo.org/libtiff/', + 'ftp://ftp.remotesensing.org/pub/libtiff/', +] sources = ['tiff-%(version)s.tar.gz'] toolchain = {'name': 'ictce', 'version': '4.1.13'} diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb index 8607639444..87e3b72f57 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-ictce-5.3.0.eb @@ -18,7 +18,10 @@ version = '4.0.3' homepage = 'http://www.remotesensing.org/libtiff/' description = "tiff: Library and tools for reading and writing TIFF data files" -source_urls = ['ftp://ftp.remotesensing.org/pub/libtiff/'] +source_urls = [ + 'http://download.osgeo.org/libtiff/', + 'ftp://ftp.remotesensing.org/pub/libtiff/', +] sources = ['tiff-%(version)s.tar.gz'] toolchain = {'name': 'ictce', 'version': '5.3.0'} diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb index a1c8f2c16c..a06a26e3be 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014b.eb @@ -17,7 +17,10 @@ version = '4.0.3' homepage = 'http://www.remotesensing.org/libtiff/' description = "tiff: Library and tools for reading and writing TIFF data files" -source_urls = ['ftp://ftp.remotesensing.org/pub/libtiff/'] +source_urls = [ + 'http://download.osgeo.org/libtiff/', + 'ftp://ftp.remotesensing.org/pub/libtiff/', +] sources = ['tiff-%(version)s.tar.gz'] toolchain = {'name': 'intel', 'version': '2014b'} diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb index 8e0c167845..a1149ab376 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.4beta-intel-2015a.eb @@ -18,7 +18,10 @@ version = '4.0.4beta' homepage = 'http://www.remotesensing.org/libtiff/' description = "tiff: Library and tools for reading and writing TIFF data files" -source_urls = ['ftp://ftp.remotesensing.org/pub/libtiff/'] +source_urls = [ + 'http://download.osgeo.org/libtiff/', + 'ftp://ftp.remotesensing.org/pub/libtiff/', +] sources = ['tiff-%(version)s.tar.gz'] toolchain = {'name': 'intel', 'version': '2015a'} -- GitLab From 83ffaa134d4ff3f85046775dd3a4c37493fef7d8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 12:19:04 +0100 Subject: [PATCH 0849/1217] add missing Java dep for Xmipp --- easybuild/easyconfigs/j/Java/Java-1.8.0_40.eb | 15 +++++++++++++++ .../easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb | 1 + 2 files changed, 16 insertions(+) create mode 100644 easybuild/easyconfigs/j/Java/Java-1.8.0_40.eb diff --git a/easybuild/easyconfigs/j/Java/Java-1.8.0_40.eb b/easybuild/easyconfigs/j/Java/Java-1.8.0_40.eb new file mode 100644 index 0000000000..f3234cbd87 --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.8.0_40.eb @@ -0,0 +1,15 @@ +name = 'Java' +version = '1.8.0_40' + +homepage = 'http://java.com/' +description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb b/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb index c8872fd3a8..441a24c254 100644 --- a/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb +++ b/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb @@ -12,6 +12,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} patches = ['sqlite_imports.patch', 'library_imports.patch'] dependencies = [ + ('Java', '1.8.0_40'), ('Python', '2.7.9'), # should have a working sqlite, and provide numpy ('freetype', '2.5.5'), ('LibTIFF', '4.0.4beta'), -- GitLab From 1f15959bff12c2b5e2b3af00b35c303bd2590fd0 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 12:30:55 +0100 Subject: [PATCH 0850/1217] Java is a dummy dep --- easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb b/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb index 441a24c254..f1d74006ee 100644 --- a/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb +++ b/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb @@ -12,7 +12,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} patches = ['sqlite_imports.patch', 'library_imports.patch'] dependencies = [ - ('Java', '1.8.0_40'), + ('Java', '1.8.0_40', '', True), ('Python', '2.7.9'), # should have a working sqlite, and provide numpy ('freetype', '2.5.5'), ('LibTIFF', '4.0.4beta'), -- GitLab From c3c3e93f66bfe09ec99c09fd5e22e687725f7ec1 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 12:40:33 +0100 Subject: [PATCH 0851/1217] fix Minimac 'version' --- ...f-1.4.10.eb => Minimac-20140110-goolf-1.4.10.eb} | 13 +++++-------- 1 file changed, 5 insertions(+), 8 deletions(-) rename easybuild/easyconfigs/m/Minimac/{Minimac-2013.7.17-goolf-1.4.10.eb => Minimac-20140110-goolf-1.4.10.eb} (78%) diff --git a/easybuild/easyconfigs/m/Minimac/Minimac-2013.7.17-goolf-1.4.10.eb b/easybuild/easyconfigs/m/Minimac/Minimac-20140110-goolf-1.4.10.eb similarity index 78% rename from easybuild/easyconfigs/m/Minimac/Minimac-2013.7.17-goolf-1.4.10.eb rename to easybuild/easyconfigs/m/Minimac/Minimac-20140110-goolf-1.4.10.eb index ab6ce7f05d..c110a85228 100644 --- a/easybuild/easyconfigs/m/Minimac/Minimac-2013.7.17-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/Minimac/Minimac-20140110-goolf-1.4.10.eb @@ -3,11 +3,10 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'Minimac' -version = '2013.7.17' -versionsuffix = '-beta' +version = '20140110' homepage = 'http://genome.sph.umich.edu/wiki/Minimac' description = """ Minimac is a low memory, computationally efficient implementation @@ -19,13 +18,11 @@ description = """ Minimac is a low memory, computationally efficient implementat toolchain = {'name': 'goolf', 'version': '1.4.10'} -# the source file doesn't include version in the name so probably you should check -# in their website if the version number and date is correct -source_urls = ['http://www.sph.umich.edu/csg/cfuchsb/'] -sources = ['%(namelower)s.src.tgz'] +# # download minimac.src.tgz from http://www.sph.umich.edu/csg/cfuchsb and rename to include version/datestamp +sources = ['%(namelower)s-%(version)s.src.tgz'] checksums = [('md5', 'a8011a4cf8a9be8add07815e9e42246d')] -# firt move to folder libStatGen to run make +# first move to folder libStatGen to run make prebuildopts = ["cd libStatGen && "] # in libStatGen folder run just "make" -- GitLab From 1dcc0fbff05b380da5a494cac9eaa1871b6efe3b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 13:08:34 +0100 Subject: [PATCH 0852/1217] add missing SQLite dependency --- easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb b/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb index f1d74006ee..bd7faf3909 100644 --- a/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb +++ b/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-intel-2015a.eb @@ -19,6 +19,7 @@ dependencies = [ ('HDF5', '1.8.14', '-gpfs'), ('libjpeg-turbo', '1.4.0'), ('FFTW', '3.3.4'), + ('SQLite', '3.8.8.1'), # must match SQLite used by Python ] moduleclass = 'vis' -- GitLab From 31ec437a5d39d01d11b1544b1797110d80ccacea Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 13:30:59 +0100 Subject: [PATCH 0853/1217] add easyconfigs for Minimac3 --- .../m/Minimac3/Minimac3-1.0.10-foss-2015a.eb | 28 +++++++++++++++++++ .../m/Minimac3/Minimac3-1.0.10-intel-2015a.eb | 28 +++++++++++++++++++ 2 files changed, 56 insertions(+) create mode 100644 easybuild/easyconfigs/m/Minimac3/Minimac3-1.0.10-foss-2015a.eb create mode 100644 easybuild/easyconfigs/m/Minimac3/Minimac3-1.0.10-intel-2015a.eb diff --git a/easybuild/easyconfigs/m/Minimac3/Minimac3-1.0.10-foss-2015a.eb b/easybuild/easyconfigs/m/Minimac3/Minimac3-1.0.10-foss-2015a.eb new file mode 100644 index 0000000000..3f8c039cdb --- /dev/null +++ b/easybuild/easyconfigs/m/Minimac3/Minimac3-1.0.10-foss-2015a.eb @@ -0,0 +1,28 @@ +easyblock = 'MakeCp' + +name = 'Minimac3' +version = '1.0.10' + +homepage = 'http://genome.sph.umich.edu/wiki/Minimac3' +description = """Minimac3 is a lower memory and more computationally efficient implementation of the genotype + imputation algorithms in minimac and minimac2. Minimac3 is designed to handle very large reference panels in a more + computationally efficient way with no loss of accuracy.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['ftp://share.sph.umich.edu/minimac3/'] +sources = ['%(name)s.v%(version)s.tar.gz'] + +dependencies = [('zlib', '1.2.8')] + +prebuildopts = 'CFLAGS="$CFLAGS -L$EBROOTZLIB/lib"' +buildopts = 'CC="$CC" CXX="$CXX" F77="$F77" OPTFLAG_OPT="$CFLAGS"' + +files_to_copy = [(['bin/Minimac3'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/Minimac3'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/Minimac3/Minimac3-1.0.10-intel-2015a.eb b/easybuild/easyconfigs/m/Minimac3/Minimac3-1.0.10-intel-2015a.eb new file mode 100644 index 0000000000..e493e1ad48 --- /dev/null +++ b/easybuild/easyconfigs/m/Minimac3/Minimac3-1.0.10-intel-2015a.eb @@ -0,0 +1,28 @@ +easyblock = 'MakeCp' + +name = 'Minimac3' +version = '1.0.10' + +homepage = 'http://genome.sph.umich.edu/wiki/Minimac3' +description = """Minimac3 is a lower memory and more computationally efficient implementation of the genotype + imputation algorithms in minimac and minimac2. Minimac3 is designed to handle very large reference panels in a more + computationally efficient way with no loss of accuracy.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['ftp://share.sph.umich.edu/minimac3/'] +sources = ['%(name)s.v%(version)s.tar.gz'] + +dependencies = [('zlib', '1.2.8')] + +prebuildopts = 'CFLAGS="$CFLAGS -wd751 -L$EBROOTZLIB/lib"' +buildopts = 'CC="$CC" CXX="$CXX" F77="$F77" OPTFLAG_OPT="$CFLAGS"' + +files_to_copy = [(['bin/Minimac3'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/Minimac3'], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From 7410b00087afc19efbe0e9db554f01059b3dfdde Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 15:46:56 +0100 Subject: [PATCH 0854/1217] use enhanced patch file for ROOT v5.34.01 with intel/2015a --- .../r/ROOT/ROOT-v5.34.01-intel-2015a.eb | 4 +-- .../r/ROOT/ROOT-v5.34.01_recent-ifort.patch | 33 +++++++++++++++++++ 2 files changed, 35 insertions(+), 2 deletions(-) create mode 100644 easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01_recent-ifort.patch diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-intel-2015a.eb b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-intel-2015a.eb index bdb5568e8a..6fd56a833c 100644 --- a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-intel-2015a.eb +++ b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-intel-2015a.eb @@ -12,8 +12,8 @@ sources = ['%s_%s.source.tar.gz' % (name.lower(), version)] source_urls = ['ftp://root.cern.ch/root/'] patches = [ 'configure_FftwFromMkl_28.patch', - 'icc_ifort_v12.patch' - ] + 'ROOT-%(version)s_recent-ifort.patch', +] python = 'Python' pyver = '2.7.3' diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01_recent-ifort.patch b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01_recent-ifort.patch new file mode 100644 index 0000000000..d942f876ee --- /dev/null +++ b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01_recent-ifort.patch @@ -0,0 +1,33 @@ +--- root/config/Makefile.linuxx8664icc.orig 2012-07-13 15:31:26.000000000 +0200 ++++ root/config/Makefile.linuxx8664icc 2015-03-24 15:38:53.604641000 +0100 +@@ -85,6 +85,16 @@ + ICC_GE_101 = 120 + endif + ++ifeq ($(ICC_MAJOR),15) ++CXXFLAGS += -m64 -wd1572 -wd279 ++CFLAGS += -m64 -wd1572 -wd279 ++CINTCXXFLAGS += -m64 -wd1572 -wd279 ++CINTCFLAGS += -m64 -wd1572 -wd279 ++LDFLAGS += -m64 ++ICC_GE_9 = 15 ++ICC_GE_101 = 150 ++endif ++ + # System libraries: + SYSLIBS = -limf -lm -ldl $(OSTHREADLIBDIR) $(OSTHREADLIB) \ + $(ALLOCLIBDIR) $(ALLOCLIB) -rdynamic +@@ -96,8 +106,12 @@ + ifeq ($(F77),ifort) + F77 = ifort + F77FLAGS = -fPIC ++ifeq ($(ICC_MAJOR),15) ++F77LIBS := -L$(shell which ifort | sed -e 's|bin/ifort|lib/intel64|') \ ++ -lifcore ++F77FLAGS += -m64 + ifeq ($(ICC_MAJOR),12) +-F77LIBS := -L$(shell which ifort | sed -e 's|bin/intel64/ifort|compiler/lib|') \ ++F77LIBS := -L$(shell which ifort | sed -e 's|bin/intel64/ifort|compiler/lib/intel64|') \ + -lifcore + F77FLAGS += -m64 + else -- GitLab From d35bee622827998e65b987faa260c6d93c4a31d7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 15:55:11 +0100 Subject: [PATCH 0855/1217] fix PyQt source_urls, configopts, Py module name --- .../p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb | 11 +++++++++-- 1 file changed, 9 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb index 3a7c99d3b4..7dd0220668 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb @@ -12,10 +12,11 @@ description = """PyQt is a set of Python v2 and v3 bindings for Digia's Qt appli toolchain = {'name': 'goolf', 'version': '1.5.14'} sources = ['%(name)s-x11-gpl-%(version)s.tar.gz'] -source_urls = ['http://sourceforge.net/projects/pyqt/files/PyQt4/PyQt-x11-gpl-%(version)s'] +source_urls = ['http://sourceforge.net/projects/pyqt/files/PyQt4/PyQt-%(version)s'] python = 'Python' pyver = '2.7.9' +pythonshortver = '.'.join(pythonver.split('.')[:2]) versionsuffix = '-%s-%s' % (python, pyver) dependencies = [ @@ -24,6 +25,12 @@ dependencies = [ ('Qt', '4.8.6'), ] -configopts = " configure-ng.py --confirm-license" +configopts = "configure-ng.py --confirm-license" +configopts += "--destdir=%%(installdir)s/lib/python%s/site-packages " % pythonshortver +configopts += "--no-sip-files" + +options = {'modulename': 'PyQt4'} + +modextrapaths = {'PYTHONPATH': 'lib/python%s/site-packages' % pythonshortver} moduleclass = 'vis' -- GitLab From 6e3e81780ed7c3a99a07fa877a1c059a0ffdc0db Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 15:57:06 +0100 Subject: [PATCH 0856/1217] fix ROOT patch file --- .../r/ROOT/ROOT-v5.34.01_recent-ifort.patch | 12 ++++++++++-- 1 file changed, 10 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01_recent-ifort.patch b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01_recent-ifort.patch index d942f876ee..bf96aaac1d 100644 --- a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01_recent-ifort.patch +++ b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01_recent-ifort.patch @@ -1,5 +1,5 @@ --- root/config/Makefile.linuxx8664icc.orig 2012-07-13 15:31:26.000000000 +0200 -+++ root/config/Makefile.linuxx8664icc 2015-03-24 15:38:53.604641000 +0100 ++++ root/config/Makefile.linuxx8664icc 2015-03-24 15:56:30.697799907 +0100 @@ -85,6 +85,16 @@ ICC_GE_101 = 120 endif @@ -17,7 +17,7 @@ # System libraries: SYSLIBS = -limf -lm -ldl $(OSTHREADLIBDIR) $(OSTHREADLIB) \ $(ALLOCLIBDIR) $(ALLOCLIB) -rdynamic -@@ -96,8 +106,12 @@ +@@ -96,8 +106,13 @@ ifeq ($(F77),ifort) F77 = ifort F77FLAGS = -fPIC @@ -25,9 +25,17 @@ +F77LIBS := -L$(shell which ifort | sed -e 's|bin/ifort|lib/intel64|') \ + -lifcore +F77FLAGS += -m64 ++else ifeq ($(ICC_MAJOR),12) -F77LIBS := -L$(shell which ifort | sed -e 's|bin/intel64/ifort|compiler/lib|') \ +F77LIBS := -L$(shell which ifort | sed -e 's|bin/intel64/ifort|compiler/lib/intel64|') \ -lifcore F77FLAGS += -m64 else +@@ -111,5 +126,6 @@ + endif + endif + endif ++endif + + # Extras -- GitLab From 1ebe2b10f4f47e11923e5d41d38d489588359fe5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 15:57:51 +0100 Subject: [PATCH 0857/1217] fix typo in PyQt easyconfig --- .../easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb index 7dd0220668..5f54e02167 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb @@ -16,7 +16,7 @@ source_urls = ['http://sourceforge.net/projects/pyqt/files/PyQt4/PyQt-%(version) python = 'Python' pyver = '2.7.9' -pythonshortver = '.'.join(pythonver.split('.')[:2]) +pythonshortver = '.'.join(pyver.split('.')[:2]) versionsuffix = '-%s-%s' % (python, pyver) dependencies = [ -- GitLab From 5baa9ad29157d4729ed0fc094274def9904f3825 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 16:01:10 +0100 Subject: [PATCH 0858/1217] fix spacing in PyQt easyconfig --- .../p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb index 5f54e02167..35c97630e9 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb @@ -26,8 +26,8 @@ dependencies = [ ] configopts = "configure-ng.py --confirm-license" -configopts += "--destdir=%%(installdir)s/lib/python%s/site-packages " % pythonshortver -configopts += "--no-sip-files" +configopts += " --destdir=%%(installdir)s/lib/python%s/site-packages " % pythonshortver +configopts += " --no-sip-files" options = {'modulename': 'PyQt4'} -- GitLab From 1f4ab43a8f2aa1a605e5ac9c21ab87f1c42dbb10 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 16:15:56 +0100 Subject: [PATCH 0859/1217] makeopts -> buildopts --- easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb | 3 +-- easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb | 3 +-- 2 files changed, 2 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb index 7caa293ce4..2c50b49d22 100644 --- a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb @@ -22,7 +22,7 @@ sources = [SOURCE_TAR_GZ] # README recommends zlib 1.2.6 or higher dependencies = [('zlib', '1.2.8')] -makeopts = ' CC=$CC' +buildopts = ' CC=$CC' parallel = 1 @@ -34,4 +34,3 @@ sanity_check_paths = { } moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb index 1f7d3bd2f0..ec92fe5f04 100644 --- a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb @@ -22,7 +22,7 @@ sources = [SOURCE_TAR_GZ] # README recommends zlib 1.2.6 or higher dependencies = [('zlib', '1.2.8')] -makeopts = ' CC=$CC' +buildopts = ' CC=$CC' parallel = 1 @@ -34,4 +34,3 @@ sanity_check_paths = { } moduleclass = 'tools' - -- GitLab From ad019134667f85695cf4e08259f5be36942c5e6e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 16:28:16 +0100 Subject: [PATCH 0860/1217] include required patch for GATE v6.2 with intel/2015a --- easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb b/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb index dd8ac9566b..b6ef9ed9c1 100644 --- a/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb +++ b/easybuild/easyconfigs/g/GATE/GATE-6.2-intel-2015a.eb @@ -11,7 +11,10 @@ toolchain = {'name': 'intel', 'version': '2015a'} sources = [('%%(namelower)s_v%s_tar_gz_15843.gz' % '_'.join(version.split('.')), "tar xfvz %s")] source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/gate_release/2012/08/'] -patches = ['GATE-%(version)s_Makefile-prefix.patch'] +patches = [ + 'GATE-%(version)s_Makefile-prefix.patch', + 'GATE-%(version)s_GCC-4.7.patch', +] dependencies = [ ('Geant4', '9.5.p01'), -- GitLab From cc68b6b9d17bdd0a87a114f84ee7cc5f77f61ed7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 19:44:46 +0100 Subject: [PATCH 0861/1217] add six/ecdsa as dep for dateutil/paramiko in Python 2.7.3 intel/2015a easyconfig --- easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb index 58d509004d..91d0cee83b 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb @@ -57,6 +57,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -75,6 +78,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), -- GitLab From 9e27023a4a17b5e725a7191bc48910427f814ef8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 19:45:57 +0100 Subject: [PATCH 0862/1217] add six/ecdsa as dep for dateutil/paramiko in Python 2.7.8 and 3.4.1 easyconfigs --- easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb | 6 ++++++ 4 files changed, 24 insertions(+) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb index 8fc41a9000..8ef1b28d6b 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb @@ -59,6 +59,9 @@ exts_list = [ ('Cython', '0.20.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.7.3', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -77,6 +80,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.14.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb index e1f4863c86..478804a887 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb @@ -69,6 +69,9 @@ exts_list = [ ('Cython', '0.20.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.7.3', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -87,6 +90,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.14.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb index 37561dbbd7..65ec137785 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb @@ -66,6 +66,9 @@ exts_list = [ ('Cython', '0.20.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.7.3', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -84,6 +87,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.14.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb index 648a65cc92..b64218f00f 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb @@ -68,6 +68,9 @@ exts_list = [ ('Cython', '0.20.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.7.3', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -86,6 +89,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.14.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), -- GitLab From 39635a4726ed15b769b6a929d8fadd958b39f50b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 19:46:41 +0100 Subject: [PATCH 0863/1217] add six/ecdsa as dep for dateutil/paramiko in Python easyconfigs using iqacml toolchain --- easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb | 6 ++++++ 2 files changed, 12 insertions(+) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb index 3b99a9a692..3dd0016674 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb @@ -63,6 +63,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -81,6 +84,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb index d5bc39c85f..1496901c99 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb @@ -64,6 +64,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -82,6 +85,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), -- GitLab From afc77b309efe490d54570fed5a6032b0a902b52b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 19:47:52 +0100 Subject: [PATCH 0864/1217] add six/ecdsa as dep for dateutil/paramiko in Python 2.7.5 easyconfigs --- .../p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb | 6 ++++++ 5 files changed, 30 insertions(+) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb index b1cf4f2c33..47b8de7acf 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb @@ -57,6 +57,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -75,6 +78,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb index 61bbf93bff..a9868e2f66 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb @@ -59,6 +59,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -77,6 +80,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb index 4702e95c66..b3e31e4ea3 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb @@ -62,6 +62,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -80,6 +83,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb index 6b7e21c3ad..ec5e6c7a3a 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb @@ -60,6 +60,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -78,6 +81,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb index 50bb8eaa10..4625232be8 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb @@ -60,6 +60,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -78,6 +81,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), -- GitLab From c0a2565162b9b4b51b50b88944cc17c15789c299 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 19:48:10 +0100 Subject: [PATCH 0865/1217] add six/ecdsa as dep for dateutil/paramiko in Python 2.7.6 easyconfigs --- easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb | 6 ++++++ 3 files changed, 18 insertions(+) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb index ab16192e19..ba61389fd5 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb @@ -59,6 +59,9 @@ exts_list = [ ('Cython', '0.19.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.4.1', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -77,6 +80,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb index 8450ef1ade..575fabb0e6 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb @@ -62,6 +62,9 @@ exts_list = [ ('Cython', '0.19.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.4.1', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -80,6 +83,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb index 84e3eb01be..8b621ebdee 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb @@ -62,6 +62,9 @@ exts_list = [ ('Cython', '0.19.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.4.1', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -80,6 +83,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), -- GitLab From 289c2bc527aaf4b09f2208cde6fa25138f40220c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 19:49:38 +0100 Subject: [PATCH 0866/1217] add six/ecdsa as dep for dateutil/paramiko in Python 2.7.3 cg*olf easyconfigs --- .../easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb | 6 ++++++ .../easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb | 6 ++++++ .../easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb | 6 ++++++ 4 files changed, 24 insertions(+) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb index 1634c92386..5625804833 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb @@ -59,6 +59,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -77,6 +80,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb index 9da359d558..eea5ccfa5e 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb @@ -57,6 +57,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -75,6 +78,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb index 1f7939f4ae..a6794c06c9 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb @@ -59,6 +59,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -77,6 +80,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb index ad3be578b7..dc891b7530 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb @@ -57,6 +57,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -75,6 +78,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), -- GitLab From d6ba5acd34b0e002e75ad0edd47239635184c1a2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 19:50:17 +0100 Subject: [PATCH 0867/1217] add six/ecdsa as dep for dateutil/paramiko in Python 2.7.3 g*olf easyconfigs --- easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb | 6 ++++++ .../easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb | 6 ++++++ .../easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb | 6 ++++++ .../p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb | 6 ++++++ 6 files changed, 36 insertions(+) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb index 87842fb428..51cfbe4606 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb @@ -59,6 +59,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -77,6 +80,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb index 2831a2cc23..311b197edf 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb @@ -59,6 +59,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -77,6 +80,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb index b776fb0b02..80c8900b94 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb @@ -59,6 +59,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -77,6 +80,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb index 78603dc07b..f847189fab 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb @@ -59,6 +59,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -77,6 +80,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb index ed4e0133ca..b2a76a28d3 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb @@ -59,6 +59,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -77,6 +80,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb index 05b7c9748b..077f9d9e7e 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb @@ -59,6 +59,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -77,6 +80,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), -- GitLab From 32a8a4776e24094d85bb8a9f61170600723765ec Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 19:51:04 +0100 Subject: [PATCH 0868/1217] add six/ecdsa as dep for dateutil/paramiko in Python 2.7.3 easyconfigs with Intel-based toolchain --- easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb | 6 ++++++ easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb | 6 ++++++ 5 files changed, 30 insertions(+) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb index aa705e3789..930a85f683 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb @@ -59,6 +59,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -77,6 +80,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb index 5ff8d51fe5..f86e562788 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb @@ -59,6 +59,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -77,6 +80,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb index b5fe2d5275..401dc6dd76 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb @@ -57,6 +57,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -75,6 +78,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb index 811713df94..e19d9c8443 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb @@ -57,6 +57,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -75,6 +78,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb index 130b9064da..31732a9f47 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb @@ -59,6 +59,9 @@ exts_list = [ ('Cython', '0.17.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.1.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -77,6 +80,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.8', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.12.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), -- GitLab From 4144a3024e1cb29214c1f0fd63ab065734890769 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 20:33:27 +0100 Subject: [PATCH 0869/1217] use --with-verbs rather than the deprecated --with-openib for OpenMPI --- .../easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb | 10 +++------- .../o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb | 10 +++------- .../easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb | 10 +++------- .../easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb | 10 +++------- .../OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb | 2 +- .../o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb | 10 +++------- .../easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb | 4 ++-- .../easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb | 10 +++------- .../OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb | 4 ++-- .../OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb | 4 ++-- 10 files changed, 25 insertions(+), 49 deletions(-) diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb index a9ae46a639..1f4d38649b 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-GCC-4.8.2.eb @@ -15,17 +15,13 @@ patches = ['OpenMPI-%(version)s-vt_cupti_events.patch'] dependencies = [('hwloc', '1.7.2')] -configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading -# needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb index 5f84390df9..094489afc4 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb @@ -15,17 +15,13 @@ patches = ['OpenMPI-%(version)s-vt_cupti_events.patch'] dependencies = [('hwloc', '1.8')] -configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--with-cuda=$CUDA_HOME ' # CUDA-aware build; N.B. --disable-dlopen is incompatible -# needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb index 7431826b3c..d9eca98720 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.1-GCC-4.8.3.eb @@ -13,17 +13,13 @@ source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/d dependencies = [('hwloc', '1.9')] -configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading -# needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb index f9db89a192..fb7afbbd41 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-GCC-4.9.2.eb @@ -13,17 +13,13 @@ source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/d dependencies = [('hwloc', '1.10.0')] -configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading -# needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb index 9beccee040..e1057430c2 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb @@ -13,7 +13,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] -configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --without-openib ' +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --without-verbs ' configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb index 23f7fbec5a..f73d19d32c 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb @@ -12,19 +12,15 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] -configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading dependencies = [('hwloc', '1.9')] -# needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb index 4450b68758..3841ad29d2 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.8.4.eb @@ -13,12 +13,12 @@ source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/d dependencies = [('hwloc', '1.10.1')] -configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading -# needed for --with-openib +# needed for --with-verbs osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb index 6b3ec45d87..e90682df3b 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GCC-4.9.2.eb @@ -13,17 +13,13 @@ source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/d dependencies = [('hwloc', '1.10.0')] -configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading -# needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb index 43c4c3d031..a3c918320f 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb @@ -12,14 +12,14 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] -configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading dependencies = [('hwloc', '1.10.0')] -# needed for --with-openib +# needed for --with-verbs osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb index 23433689d8..d7df86c8d6 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb @@ -12,7 +12,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] -configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += ' CC=icc FC=ifort CXX=icpc ' @@ -20,7 +20,7 @@ configopts += '--disable-dlopen ' # statically link component, don't do dynamic dependencies = [('hwloc', '1.10.0')] -# needed for --with-openib +# needed for --with-verbs osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { -- GitLab From 02c77208e4a3d3b4df1ac1dfbeedcb804f1a31d4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 24 Mar 2015 20:37:21 +0100 Subject: [PATCH 0870/1217] fix osdeps spec in OpenMPI easyconfigs, stop relying on OS_NAME --- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb | 6 +----- .../o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb | 6 +----- .../easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb | 6 +----- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb | 6 +----- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb | 6 +----- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb | 6 +----- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb | 6 +----- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb | 6 +----- easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb | 1 + .../o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb | 6 +----- .../o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb | 6 +----- 11 files changed, 11 insertions(+), 50 deletions(-) diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb index 7a690ab154..fe72e01efd 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.4.5-GCC-4.6.3.eb @@ -15,11 +15,7 @@ configopts = '--with-threads=posix --enable-shared --enable-mpi-threads --with-o configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path # needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb index 65a5c05009..3f5d4cafd7 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb @@ -18,11 +18,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support dependencies = [('hwloc', '1.6')] # needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb index e8dab7a8ac..68114cf721 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-ClangGCC-1.1.3.eb @@ -19,11 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb index bd0832e690..109447fa55 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.6.4.eb @@ -19,11 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb index 1505eba3ad..7d3922cea0 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2.eb @@ -19,11 +19,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb index cbe729175a..21bd882ac7 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.2.eb @@ -22,11 +22,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb index a0f0714984..394c231617 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb @@ -18,11 +18,7 @@ configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading # needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb index 4cad97973f..908f092bfa 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb @@ -21,11 +21,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' dependencies = [('hwloc', '1.8.1')] # needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb index fe19ab4c9f..c9d45613df 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb @@ -20,6 +20,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' dependencies = [('hwloc', '1.8.1')] +# needed for --with-openib osdependencies = [('libibverbs-dev','libibverbs-devel')] sanity_check_paths = { diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb index 905ab46028..85b6644c9f 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb @@ -18,11 +18,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support dependencies = [('hwloc', '1.8.1')] # needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb index 5164388442..79c31e1c3d 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb @@ -18,11 +18,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support dependencies = [('hwloc', '1.9')] # needed for --with-openib -if OS_NAME in ['debian', 'ubuntu']: - osdependencies = ['libibverbs-dev'] -else: - # OK for OS_NAME == redhat, fedora, RHEL, SL, centos - osdependencies = ['libibverbs-devel'] +osdependencies = [('libibverbs-dev','libibverbs-devel')] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + -- GitLab From 643b4b9d03f52480c70e67b7289bff407fca9eb4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 25 Mar 2015 09:46:49 +0100 Subject: [PATCH 0871/1217] add easyconfig for lxml v3.4.2 with intel/2015a --- .../lxml-3.4.2-intel-2015a-Python-2.7.9.eb | 35 +++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 easybuild/easyconfigs/l/lxml/lxml-3.4.2-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/l/lxml/lxml-3.4.2-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/l/lxml/lxml-3.4.2-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..db1b7a5deb --- /dev/null +++ b/easybuild/easyconfigs/l/lxml/lxml-3.4.2-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,35 @@ +easyblock = "PythonPackage" + +name = 'lxml' +version = '3.4.2' + +homepage = 'http://lxml.de/' +description = """The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://lxml.de/files/'] +sources = [SOURCE_TGZ] + +python = 'Python' +pythonversion = '2.7.9' +pyshortver = '.'.join(pythonversion.split('.')[:2]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('libxml2', '2.9.2'), + ('libxslt', '1.1.28'), +] + +pylibdir = "lib/python%s/site-packages/%%(name)s" % pyshortver + +sanity_check_paths = { + 'files': [], + 'dirs': [('%s-%%(version)s-py%s.egg' % (pylibdir, pyshortver), + '%s-%%(version)s-py%s-linux-x86_64.egg' % (pylibdir, pyshortver))], +} + +moduleclass = 'lib' + -- GitLab From caf3a4cc0969188e9b5a863c42b1148bd04ba6cf Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 25 Mar 2015 10:04:04 +0100 Subject: [PATCH 0872/1217] style fix --- .../easyconfigs/l/lxml/lxml-3.1.2-goolf-1.4.10-Python-2.7.3.eb | 1 - .../easyconfigs/l/lxml/lxml-3.1.2-ictce-5.3.0-Python-2.7.3.eb | 1 - .../easyconfigs/l/lxml/lxml-3.4.2-intel-2015a-Python-2.7.9.eb | 1 - 3 files changed, 3 deletions(-) diff --git a/easybuild/easyconfigs/l/lxml/lxml-3.1.2-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/l/lxml/lxml-3.1.2-goolf-1.4.10-Python-2.7.3.eb index 7ab203990e..6899577527 100644 --- a/easybuild/easyconfigs/l/lxml/lxml-3.1.2-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/lxml/lxml-3.1.2-goolf-1.4.10-Python-2.7.3.eb @@ -32,4 +32,3 @@ sanity_check_paths = { } moduleclass = 'lib' - diff --git a/easybuild/easyconfigs/l/lxml/lxml-3.1.2-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/l/lxml/lxml-3.1.2-ictce-5.3.0-Python-2.7.3.eb index 7c17d46955..1e39e76f87 100644 --- a/easybuild/easyconfigs/l/lxml/lxml-3.1.2-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/lxml/lxml-3.1.2-ictce-5.3.0-Python-2.7.3.eb @@ -32,4 +32,3 @@ sanity_check_paths = { } moduleclass = 'lib' - diff --git a/easybuild/easyconfigs/l/lxml/lxml-3.4.2-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/l/lxml/lxml-3.4.2-intel-2015a-Python-2.7.9.eb index db1b7a5deb..0b5c2b72a8 100644 --- a/easybuild/easyconfigs/l/lxml/lxml-3.4.2-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/l/lxml/lxml-3.4.2-intel-2015a-Python-2.7.9.eb @@ -32,4 +32,3 @@ sanity_check_paths = { } moduleclass = 'lib' - -- GitLab From 2961c78c4e6b19233e59d3dfc1ca7403f3a9ffb1 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 25 Mar 2015 14:41:18 +0100 Subject: [PATCH 0873/1217] get rid of LDSHARED line in zlib easyconfig --- easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.5.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.5.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.5.0.eb index 9a7769b77c..32533e0df9 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.5.0.eb @@ -14,7 +14,7 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' +patches = ['zlib-%(version)s-detected-icc.patch'] sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], -- GitLab From 7259dec519cf6996dd1f00a9514f7ceef8be87dc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 25 Mar 2015 14:48:06 +0100 Subject: [PATCH 0874/1217] add zlib dep to Tcl 8.6.3 easyconfigs --- easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-GCC-4.9.2.eb | 4 ++++ easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015a.eb | 4 ++++ easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-gompi-1.5.16.eb | 4 ++++ easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-goolf-1.5.14.eb | 4 ++++ easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-intel-2015a.eb | 4 ++++ 5 files changed, 20 insertions(+) diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-GCC-4.9.2.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-GCC-4.9.2.eb index 7affc5dcb2..b3a8beb767 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-GCC-4.9.2.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'GCC', 'version': '4.9.2'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.8'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015a.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015a.eb index 391e0178fc..45613c8d4e 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015a.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015a.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'foss', 'version': '2015a'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.8'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-gompi-1.5.16.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-gompi-1.5.16.eb index b13013fafe..5aa437f573 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-gompi-1.5.16.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-gompi-1.5.16.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'gompi', 'version': '1.5.16'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.8'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-goolf-1.5.14.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-goolf-1.5.14.eb index dbe7dcaaa1..f169881758 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-goolf-1.5.14.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'goolf', 'version': '1.5.14'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.8'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-intel-2015a.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-intel-2015a.eb index fab2dfdb6c..945189208b 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-intel-2015a.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-intel-2015a.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'intel', 'version': '2015a'} source_urls = ["http://prdownloads.sourceforge.net/tcl"] sources = ['%(namelower)s%(version)s-src.tar.gz'] +dependencies = [ + ('zlib', '1.2.8'), +] + configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' runtest = 'test' -- GitLab From 86c640dece9e1929fed1ac3fce878be59be5d026 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 26 Mar 2015 08:53:05 +0100 Subject: [PATCH 0875/1217] {bio}[intel/2015a] BEDTools 2.23.0 --- .../b/BEDTools/BEDTools-2.23.0-intel-2015a.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb new file mode 100644 index 0000000000..1ebb68b4ac --- /dev/null +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb @@ -0,0 +1,29 @@ +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics (SIB) +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'BEDTools' +version = '2.23.0' + +homepage = "https://github.com/arq5x/bedtools2" +description = """The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps + and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, + and SAM/BAM.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['https://github.com/arq5x/bedtools2/archive/'] +sources = ['v%(version)s.tar.gz'] + +buildopts = 'CXX="$CXX"' + +files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], + 'dirs': files_to_copy, +} + +moduleclass = 'bio' -- GitLab From 0944a456af1b195104c92efbc2a14f41b0f7fef7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 26 Mar 2015 10:02:28 +0100 Subject: [PATCH 0876/1217] enhance files_to_copy in BEDTools easyconfigs --- .../easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb | 4 ++-- .../easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb | 4 ++-- .../easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb | 4 ++-- .../easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb | 4 ++-- .../easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb | 4 ++-- .../easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb | 4 ++-- 6 files changed, 12 insertions(+), 12 deletions(-) diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb index acb234afd4..36c561073e 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb @@ -15,11 +15,11 @@ sources = ['%(name)s.v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README', 'RELEASE_HISTORY'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], - 'dirs': files_to_copy, + 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test', 'tutorial'], } moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb index 8b2873ae74..1339526329 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb @@ -15,11 +15,11 @@ sources = ['%(name)s.v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README', 'RELEASE_HISTORY'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], - 'dirs': files_to_copy, + 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test', 'tutorial'], } moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb index 22c311e675..e784118a14 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb @@ -19,11 +19,11 @@ sources = ['v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README', 'RELEASE_HISTORY'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], - 'dirs': files_to_copy, + 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test', 'tutorial'], } moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb index 1631b47200..d8000f9159 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb @@ -17,11 +17,11 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['https://github.com/arq5x/bedtools2/archive/'] sources = ['v%(version)s.tar.gz'] -files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README', 'RELEASE_HISTORY'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], - 'dirs': files_to_copy, + 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test', 'tutorial'], } moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb index eff9f8d9ca..0f5a579f6e 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb @@ -19,11 +19,11 @@ sources = ['v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README', 'RELEASE_HISTORY'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], - 'dirs': files_to_copy, + 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test', 'tutorial'], } moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb index 1ebb68b4ac..0ddc9b27d8 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb @@ -19,11 +19,11 @@ sources = ['v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README', 'RELEASE_HISTORY'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], - 'dirs': files_to_copy, + 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test', 'tutorial'], } moduleclass = 'bio' -- GitLab From a01b731a699d555c68cfe493a88721c6236fdd7c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 26 Mar 2015 10:04:25 +0100 Subject: [PATCH 0877/1217] README -> README.md --- .../easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb | 2 +- .../easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb | 2 +- .../easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb | 2 +- .../easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb | 2 +- easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb index 36c561073e..b12a1735c0 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb @@ -15,7 +15,7 @@ sources = ['%(name)s.v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README', 'RELEASE_HISTORY'] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README.md', 'RELEASE_HISTORY'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb index 1339526329..cf86fb61cf 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb @@ -15,7 +15,7 @@ sources = ['%(name)s.v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README', 'RELEASE_HISTORY'] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README.md', 'RELEASE_HISTORY'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb index e784118a14..82e5478df3 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb @@ -19,7 +19,7 @@ sources = ['v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README', 'RELEASE_HISTORY'] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README.md', 'RELEASE_HISTORY'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb index d8000f9159..88d7ab07dc 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb @@ -17,7 +17,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['https://github.com/arq5x/bedtools2/archive/'] sources = ['v%(version)s.tar.gz'] -files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README', 'RELEASE_HISTORY'] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README.md', 'RELEASE_HISTORY'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb index 0f5a579f6e..44bbeb346c 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb @@ -19,7 +19,7 @@ sources = ['v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README', 'RELEASE_HISTORY'] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README.md', 'RELEASE_HISTORY'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb index 0ddc9b27d8..d6d66e8578 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb @@ -19,7 +19,7 @@ sources = ['v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README', 'RELEASE_HISTORY'] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README.md', 'RELEASE_HISTORY'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], -- GitLab From 2e566d1576409d4a1d1f81cbad8be150904e8073 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 26 Mar 2015 10:19:04 +0100 Subject: [PATCH 0878/1217] {numlib}[intel/2015a] PETSc/SLEPc 3.5.3 --- .../c/CMake/CMake-3.2.1-intel-2015a.eb | 22 ++++++++++++++ .../h/Hypre/Hypre-2.10.0b-intel-2015a.eb | 22 ++++++++++++++ .../m/METIS/METIS-5.1.0-intel-2015a.eb | 22 ++++++++++++++ .../PETSc-3.5.3-intel-2015a-Python-2.7.9.eb | 30 +++++++++++++++++++ .../SLEPc-3.5.3-intel-2015a-Python-2.7.9.eb | 19 ++++++++++++ 5 files changed, 115 insertions(+) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.2.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/h/Hypre/Hypre-2.10.0b-intel-2015a.eb create mode 100644 easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2015a.eb create mode 100644 easybuild/easyconfigs/p/PETSc/PETSc-3.5.3-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/s/SLEPc/SLEPc-3.5.3-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.2.1-intel-2015a.eb b/easybuild/easyconfigs/c/CMake/CMake-3.2.1-intel-2015a.eb new file mode 100644 index 0000000000..4982739fa2 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.2.1-intel-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.2.1' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/h/Hypre/Hypre-2.10.0b-intel-2015a.eb b/easybuild/easyconfigs/h/Hypre/Hypre-2.10.0b-intel-2015a.eb new file mode 100644 index 0000000000..160c06dcb8 --- /dev/null +++ b/easybuild/easyconfigs/h/Hypre/Hypre-2.10.0b-intel-2015a.eb @@ -0,0 +1,22 @@ +name = 'Hypre' +version = '2.10.0b' + +homepage = "https://computation.llnl.gov/casc/linear_solvers/sls_hypre.html" +description = """Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. + The problems of interest arise in the simulation codes being developed at LLNL and elsewhere + to study physical phenomena in the defense, environmental, energy, and biological sciences.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +# download via https://computation.llnl.gov/project/linear_solvers/download/hypre-2.10.0b_reg.php +sources = [SOURCELOWER_TAR_GZ] + +start_dir = "src" + +sanity_check_paths = { + 'files': ['lib/libHYPRE.a'], + 'dirs': ['include'] +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2015a.eb b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2015a.eb new file mode 100644 index 0000000000..ef2bf9ff97 --- /dev/null +++ b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2015a.eb @@ -0,0 +1,22 @@ +name = 'METIS' +version = '5.1.0' + +homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/metis/overview' +description = """METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, +and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the +multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD', +] + +patches = ['METIS_IDXTYPEWIDTH.patch'] + +builddependencies = [('CMake', '3.0.0')] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/p/PETSc/PETSc-3.5.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/PETSc/PETSc-3.5.3-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..6f526fc72b --- /dev/null +++ b/easybuild/easyconfigs/p/PETSc/PETSc-3.5.3-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,30 @@ +name = 'PETSc' +version = '3.5.3' +versionsuffix = '-Python-2.7.9' + +homepage = 'http://www.mcs.anl.gov/petsc' +description = """PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the + scalable (parallel) solution of scientific applications modeled by partial differential equations.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'usempi': True, 'pic': True} + +source_urls = ['http://ftp.mcs.anl.gov/pub/petsc/release-snapshots'] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['PETSc_ranlib-fix.patch'] + +parmetis = 'ParMETIS' +parmetis_ver = '4.0.3' +dependencies = [ + ('Boost', '1.57.0', versionsuffix), + ('METIS', '5.1.0'), + (parmetis, parmetis_ver), + ('SCOTCH', '6.0.4'), + ('SuiteSparse', '4.4.3', '-%s-%s' % (parmetis, parmetis_ver)), + ('Hypre', '2.10.0b'), +] + +builddependencies = [('CMake', '3.2.1')] + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/SLEPc/SLEPc-3.5.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/SLEPc/SLEPc-3.5.3-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..2253b31148 --- /dev/null +++ b/easybuild/easyconfigs/s/SLEPc/SLEPc-3.5.3-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,19 @@ +name = 'SLEPc' +version = '3.5.3' +versionsuffix = '-Python-2.7.9' + +homepage = 'http://www.grycap.upv.es/slepc/' +description = """SLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution of + large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for either + standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a partial + SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'usempi': True} + +source_urls = ['http://www.grycap.upv.es/slepc/download/download.php?filename='] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('PETSc', '3.5.3', versionsuffix)] + +moduleclass = 'numlib' -- GitLab From e91b085d363eeb0522ce5178e6687b207b49ec80 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 26 Mar 2015 10:25:35 +0100 Subject: [PATCH 0879/1217] only include 'tutorial' for latest BEDTools version, drop RELEASE_HISTORY (not updated) --- .../easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb | 4 ++-- .../easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb | 4 ++-- .../easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb | 4 ++-- .../easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb | 4 ++-- .../easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb | 4 ++-- .../easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb | 2 +- 6 files changed, 11 insertions(+), 11 deletions(-) diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb index b12a1735c0..3ef9441cda 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb @@ -15,11 +15,11 @@ sources = ['%(name)s.v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README.md', 'RELEASE_HISTORY'] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'README.md'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], - 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test', 'tutorial'], + 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test'], } moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb index cf86fb61cf..238a596ad4 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb @@ -15,11 +15,11 @@ sources = ['%(name)s.v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README.md', 'RELEASE_HISTORY'] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'README.md'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], - 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test', 'tutorial'], + 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test'], } moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb index 82e5478df3..fd405d9247 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb @@ -19,11 +19,11 @@ sources = ['v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README.md', 'RELEASE_HISTORY'] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'README.md'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], - 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test', 'tutorial'], + 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test'], } moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb index 88d7ab07dc..91498fff43 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb @@ -17,11 +17,11 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['https://github.com/arq5x/bedtools2/archive/'] sources = ['v%(version)s.tar.gz'] -files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README.md', 'RELEASE_HISTORY'] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'README.md'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], - 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test', 'tutorial'], + 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test'], } moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb index 44bbeb346c..92af179960 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb @@ -19,11 +19,11 @@ sources = ['v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README.md', 'RELEASE_HISTORY'] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'README.md'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], - 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test', 'tutorial'], + 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test'], } moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb index d6d66e8578..6160ea7421 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb @@ -19,7 +19,7 @@ sources = ['v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README.md', 'RELEASE_HISTORY'] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README.md'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], -- GitLab From 93eb34019c4dceb6bc9747caddd89d792be7d0e7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 26 Mar 2015 10:36:53 +0100 Subject: [PATCH 0880/1217] README.md -> README.rst for old BEDTools versions --- .../easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb | 2 +- .../easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb | 2 +- .../easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb index 3ef9441cda..ba457aaa3a 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb @@ -15,7 +15,7 @@ sources = ['%(name)s.v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'README.md'] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'README.rst'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb index 238a596ad4..e21399a897 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb @@ -15,7 +15,7 @@ sources = ['%(name)s.v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'README.md'] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'README.rst'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb index fd405d9247..3d93f1ffe1 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb @@ -19,7 +19,7 @@ sources = ['v%(version)s.tar.gz'] buildopts = 'CXX="$CXX"' -files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'README.md'] +files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'README.rst'] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], -- GitLab From 8031b31db717fbb23eb489eb1859a807808057f0 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 27 Mar 2015 11:39:40 +0100 Subject: [PATCH 0881/1217] add easyconfig for ABAQUS v6.13.5 --- .../a/ABAQUS/ABAQUS-6.13.5-linux-x86_64.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.13.5-linux-x86_64.eb diff --git a/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.13.5-linux-x86_64.eb b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.13.5-linux-x86_64.eb new file mode 100644 index 0000000000..3f6f20e906 --- /dev/null +++ b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.13.5-linux-x86_64.eb @@ -0,0 +1,15 @@ +name = 'ABAQUS' +version = '6.13.5-linux-x86_64' + +homepage = 'http://www.simulia.com/products/abaqus_fea.html' +description = "Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA." + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['%s-%s.tgz' % (name, version.split('-')[0])] + +builddependencies = [('Java', '1.7.0_60')] + +preinstallopts = "export CHECK_DISK_SPACE=OFF && " + +moduleclass = 'cae' -- GitLab From 08fe8cca49fe15022486cf6d6a1fbacbaaebcab6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 27 Mar 2015 12:32:51 +0100 Subject: [PATCH 0882/1217] fix remark w.r.t. versionsuffix for ABAQUS, sync ABAQUS easyconfigs w.r.t. Java builddep and preinstallopts --- .../easyconfigs/a/ABAQUS/ABAQUS-6.12.1-linux-x86_64.eb | 9 +++++++-- .../easyconfigs/a/ABAQUS/ABAQUS-6.13.5-linux-x86_64.eb | 5 +++-- .../easyconfigs/a/ABAQUS/ABAQUS-6.14.1-linux-x86_64.eb | 5 +++-- 3 files changed, 13 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.12.1-linux-x86_64.eb b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.12.1-linux-x86_64.eb index f3d5536662..b75c3fcda9 100644 --- a/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.12.1-linux-x86_64.eb +++ b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.12.1-linux-x86_64.eb @@ -1,11 +1,16 @@ name = 'ABAQUS' -version = '6.12.1-linux-x86_64' +version = '6.12.1' +versionsuffix = '-linux-x86_64' homepage = 'http://www.simulia.com/products/abaqus_fea.html' description = "Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA." toolchain = {'name': 'dummy', 'version': 'dummy'} -sources = ['%s-%s.tgz' % (name, version.split('-')[0])] +sources = [SOURCE_TGZ] + +builddependencies = [('Java', '1.7.0_60')] + +preinstallopts = "export CHECK_DISK_SPACE=OFF && " moduleclass = 'cae' diff --git a/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.13.5-linux-x86_64.eb b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.13.5-linux-x86_64.eb index 3f6f20e906..5f10d53c00 100644 --- a/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.13.5-linux-x86_64.eb +++ b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.13.5-linux-x86_64.eb @@ -1,12 +1,13 @@ name = 'ABAQUS' -version = '6.13.5-linux-x86_64' +version = '6.13.5' +versionsuffix = '-linux-x86_64' homepage = 'http://www.simulia.com/products/abaqus_fea.html' description = "Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA." toolchain = {'name': 'dummy', 'version': 'dummy'} -sources = ['%s-%s.tgz' % (name, version.split('-')[0])] +sources = [SOURCE_TGZ] builddependencies = [('Java', '1.7.0_60')] diff --git a/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.14.1-linux-x86_64.eb b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.14.1-linux-x86_64.eb index 47622c51e0..db92841b05 100644 --- a/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.14.1-linux-x86_64.eb +++ b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.14.1-linux-x86_64.eb @@ -1,12 +1,13 @@ name = 'ABAQUS' -version = '6.14.1-linux-x86_64' +version = '6.14.1' +versionsuffix = '-linux-x86_64' homepage = 'http://www.simulia.com/products/abaqus_fea.html' description = "Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA." toolchain = {'name': 'dummy', 'version': 'dummy'} -sources = ['%s-%s.tgz' % (name, version.split('-')[0])] +sources = [SOURCE_TGZ] builddependencies = [('Java', '1.7.0_60')] -- GitLab From e67c6f672ebcdbccbc1c869bfb4ef7c1a0095d6f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 27 Mar 2015 15:25:27 +0100 Subject: [PATCH 0883/1217] reinclude FIAT and ScientificPython (that depends on an older numpy) as PETSc deps --- .../FIAT-1.5.0-intel-2015a-Python-2.7.9.eb | 35 ++++++++++++++++++ .../PETSc-3.5.3-intel-2015a-Python-2.7.9.eb | 2 ++ ...icPython-2.9.4-intel-2015a-Python-2.7.9.eb | 36 +++++++++++++++++++ 3 files changed, 73 insertions(+) create mode 100644 easybuild/easyconfigs/f/FIAT/FIAT-1.5.0-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/s/ScientificPython/ScientificPython-2.9.4-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/f/FIAT/FIAT-1.5.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/f/FIAT/FIAT-1.5.0-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..03fe5cf7a1 --- /dev/null +++ b/easybuild/easyconfigs/f/FIAT/FIAT-1.5.0-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,35 @@ +easyblock = 'PythonPackage' + +name = 'FIAT' +version = '1.5.0' + +homepage = 'ttps://bitbucket.org/fenics-project/fiat' +description = """The FInite element Automatic Tabulator FIAT supports generation of arbitrary order +instances of the Lagrange elements on lines, triangles, and tetrahedra. It is also capable of generating +arbitrary order instances of Jacobi-type quadrature rules on the same element shapes.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['https://bitbucket.org/fenics-project/fiat/downloads'] +sources = [SOURCELOWER_TAR_GZ] + +python = "Python" +pythonversion = '2.7.9' +pythonshortversion = ".".join(pythonversion.split('.')[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('ScientificPython', '2.9.4', versionsuffix), + ('sympy', '0.7.6', versionsuffix), +] + +options = {'modulename': name} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/FIAT' % pythonshortversion], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/p/PETSc/PETSc-3.5.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/PETSc/PETSc-3.5.3-intel-2015a-Python-2.7.9.eb index 6f526fc72b..4842cf5227 100644 --- a/easybuild/easyconfigs/p/PETSc/PETSc-3.5.3-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/PETSc/PETSc-3.5.3-intel-2015a-Python-2.7.9.eb @@ -18,8 +18,10 @@ parmetis = 'ParMETIS' parmetis_ver = '4.0.3' dependencies = [ ('Boost', '1.57.0', versionsuffix), + ('FIAT', '1.5.0', versionsuffix), ('METIS', '5.1.0'), (parmetis, parmetis_ver), + ('ScientificPython', '2.9.4', versionsuffix), ('SCOTCH', '6.0.4'), ('SuiteSparse', '4.4.3', '-%s-%s' % (parmetis, parmetis_ver)), ('Hypre', '2.10.0b'), diff --git a/easybuild/easyconfigs/s/ScientificPython/ScientificPython-2.9.4-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/ScientificPython/ScientificPython-2.9.4-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..0170615e9c --- /dev/null +++ b/easybuild/easyconfigs/s/ScientificPython/ScientificPython-2.9.4-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,36 @@ +easyblock = "PythonPackage" + +name = 'ScientificPython' +version = '2.9.4' + +homepage = 'https://sourcesup.cru.fr/projects/scientific-py/' +description = """ScientificPython is a collection of Python modules for scientific computing. + It contains support for geometry, mathematical functions, statistics, physical units, IO, visualization, + and parallelization.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['https://sourcesup.renater.fr/frs/download.php/4570'] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonversion = '2.7.9' +pythonshortversion = '.'.join(pythonversion.split('.')[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + # older version of numpy than the one included in Python module required + # cfr. https://bitbucket.org/khinsen/scientificpython/issue/13/numpy-19-has-dropped-support-for + ('numpy', '1.8.2', versionsuffix), +] + +options = {'modulename': 'Scientific'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/Scientific' % pythonshortversion], +} + +moduleclass = 'math' -- GitLab From bb78d65b3db5a14742bed3f7de4e8352598b0981 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 27 Mar 2015 15:26:20 +0100 Subject: [PATCH 0884/1217] add missing sympy/numpy easyconfigs --- .../easyconfigs/n/numpy/numpy-1.8.1-mkl.patch | 213 ++++++++++++++++++ .../numpy-1.8.2-intel-2015a-Python-2.7.9.eb | 26 +++ .../sympy-0.7.6-intel-2015a-Python-2.7.9.eb | 32 +++ 3 files changed, 271 insertions(+) create mode 100644 easybuild/easyconfigs/n/numpy/numpy-1.8.1-mkl.patch create mode 100644 easybuild/easyconfigs/n/numpy/numpy-1.8.2-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/s/sympy/sympy-0.7.6-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.8.1-mkl.patch b/easybuild/easyconfigs/n/numpy/numpy-1.8.1-mkl.patch new file mode 100644 index 0000000000..363f95c19f --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.8.1-mkl.patch @@ -0,0 +1,213 @@ +diff -ur numpy-1.8.1.orig/numpy/distutils/fcompiler/__init__.py numpy-1.8.1-2/numpy/distutils/fcompiler/__init__.py +--- numpy-1.8.1.orig/numpy/distutils/fcompiler/__init__.py 2014-03-25 20:43:24.000000000 +0100 ++++ numpy-1.8.1-2/numpy/distutils/fcompiler/__init__.py 2014-07-08 15:22:31.471064031 +0200 +@@ -628,7 +628,10 @@ + return options + + def library_option(self, lib): +- return "-l" + lib ++ if lib[0]=='-': ++ return lib ++ else: ++ return "-l" + lib + def library_dir_option(self, dir): + return "-L" + dir + +diff -ur numpy-1.8.1.orig/numpy/distutils/system_info.py numpy-1.8.1-2/numpy/distutils/system_info.py +--- numpy-1.8.1.orig/numpy/distutils/system_info.py 2014-03-25 20:43:24.000000000 +0100 ++++ numpy-1.8.1-2/numpy/distutils/system_info.py 2014-07-08 15:32:34.480063940 +0200 +@@ -600,7 +600,7 @@ + if is_string(default): + return [default] + return default +- return [b for b in [a.strip() for a in libs.split(',')] if b] ++ return [b for b in [a.strip().replace(':',',') for a in libs.split(',')] if b] + + def get_libraries(self, key='libraries'): + return self.get_libs(key, '') +@@ -642,6 +642,23 @@ + lib_dirs) + return info + ++ def check_libs_all(self,lib_dir,libs,opt_libs =[]): ++ """If static or shared libraries are available then return ++ their info dictionary. ++ ++ Checks for all libraries as shared libraries first, then ++ static (or vice versa if self.search_static_first is True). ++ """ ++ exts = self.library_extensions() ++ info = None ++ for ext in exts: ++ info = self._check_libs_all(lib_dir,libs,opt_libs,[ext]) ++ if info is not None: ++ break ++ if not info: ++ log.info(' libraries %s not found in %s', ','.join(libs), lib_dir) ++ return info ++ + def check_libs2(self, lib_dirs, libs, opt_libs=[]): + """If static or shared libraries are available then return + their info dictionary. +@@ -655,6 +672,18 @@ + lib_dirs) + return info + ++ def check_libs2_all(self, lib_dirs, libs, opt_libs =[]): ++ """If static or shared libraries are available then return ++ their info dictionary. ++ ++ Checks each library for shared or static. ++ """ ++ exts = self.library_extensions() ++ info = self._check_libs_all(lib_dirs,libs,opt_libs,exts) ++ if not info: ++ log.info(' libraries %s not found in %s', ','.join(libs), os.pathsep.join(lib_dirs)) ++ return info ++ + def _lib_list(self, lib_dir, libs, exts): + assert is_string(lib_dir) + liblist = [] +@@ -665,6 +694,9 @@ + lib_prefixes = ['lib'] + # for each library name, see if we can find a file for it. + for l in libs: ++ if l[0]=='-': ++ liblist.append(l) ++ continue + for ext in exts: + for prefix in lib_prefixes: + p = self.combine_paths(lib_dir, prefix + l + ext) +@@ -680,6 +712,19 @@ + break + return liblist + ++ def _lib_list_all(self, lib_dirs, libs, exts): ++ assert (type(lib_dirs)==list) ++ if lib_dirs: ++ assert is_string(lib_dirs[0]) ++ liblist=[] ++ for lib_dir in lib_dirs: ++ ls=self._lib_list(lib_dir,libs,exts) ++ for l in ls: ++ log.info("(_lib_list_all) Found %s in %s"%(l,lib_dir)) ++ if l not in liblist: ++ liblist.append(l) ++ return liblist ++ + def _check_libs(self, lib_dirs, libs, opt_libs, exts): + """Find mandatory and optional libs in expected paths. + +@@ -721,6 +766,22 @@ + else: + return None + ++ def _check_libs_all(self, lib_dirs, libs, opt_libs, exts): ++ found_libs_unordered = self._lib_list_all(lib_dirs, libs, exts) ++ # ensure same order as in lib_dirs ++ found_libs = [] ++ for lib_dir in libs: ++ if lib_dir in found_libs_unordered: ++ found_libs.append(lib_dir) ++ if len(found_libs) == len(libs): ++ info = {'libraries' : found_libs, 'library_dirs' : lib_dirs} ++ opt_found_libs = self._lib_list_all(lib_dirs, opt_libs, exts) ++ if len(opt_found_libs) == len(opt_libs): ++ info['libraries'].extend(opt_found_libs) ++ return info ++ else: ++ return ++ + def combine_paths(self, *args): + """Return a list of existing paths composed by all combinations + of items from the arguments. +@@ -953,9 +1014,11 @@ + lib_dirs = self.get_lib_dirs() + incl_dirs = self.get_include_dirs() + mkl_libs = self.get_libs('mkl_libs', self._lib_mkl) +- info = self.check_libs2(lib_dirs, mkl_libs) +- if info is None: ++ mkl = None ++ mkl = self.check_libs2_all(lib_dirs,mkl_libs) ++ if mkl is None: + return ++ info = mkl + dict_append(info, + define_macros=[('SCIPY_MKL_H', None)], + include_dirs=incl_dirs) +@@ -1017,16 +1080,13 @@ + atlas = None + lapack = None + atlas_1 = None +- for d in lib_dirs: +- atlas = self.check_libs2(d, atlas_libs, []) +- lapack_atlas = self.check_libs2(d, ['lapack_atlas'], []) +- if atlas is not None: +- lib_dirs2 = [d] + self.combine_paths(d, ['atlas*', 'ATLAS*']) +- lapack = self.check_libs2(lib_dirs2, lapack_libs, []) +- if lapack is not None: +- break +- if atlas: +- atlas_1 = atlas ++ atlas = self.check_libs2_all(lib_dirs, atlas_libs) ++ lapack_atlas = self.check_libs2_all(lib_dirs, ['lapack_atlas']) ++ if atlas is not None: ++ lib_dirs2 = lib_dirs + self.combine_paths(lib_dirs,['atlas*','ATLAS*']) ++ lapack = self.check_libs2_all(lib_dirs2, lapack_libs) ++ if atlas: ++ atlas_1 = atlas + log.info(self.__class__) + if atlas is None: + atlas = atlas_1 +@@ -1105,7 +1165,8 @@ + info = {} + atlas_libs = self.get_libs('atlas_libs', + self._lib_names + self._lib_atlas) +- atlas = self.check_libs2(lib_dirs, atlas_libs, []) ++ atlas = None ++ atlas = self.check_libs2_all(lib_dirs, atlas_libs) + if atlas is None: + return + include_dirs = self.get_include_dirs() +@@ -1153,8 +1214,10 @@ + lib_dirs = self.get_lib_dirs() + + lapack_libs = self.get_libs('lapack_libs', self._lib_names) +- info = self.check_libs(lib_dirs, lapack_libs, []) +- if info is None: ++ lapack = self.check_libs_all(lib_dirs, lapack_libs, []) ++ if lapack is not None: ++ info = lapack ++ else: + return + info['language'] = 'f77' + self.set_info(**info) +@@ -1548,8 +1611,10 @@ + lib_dirs = self.get_lib_dirs() + + blas_libs = self.get_libs('blas_libs', self._lib_names) +- info = self.check_libs(lib_dirs, blas_libs, []) +- if info is None: ++ blas = self.check_libs_all(lib_dirs, blas_libs, []) ++ if blas is not None: ++ info = blas ++ else: + return + info['language'] = 'f77' # XXX: is it generally true? + self.set_info(**info) +diff -ur numpy-1.8.1.orig/numpy/distutils/unixccompiler.py numpy-1.8.1-2/numpy/distutils/unixccompiler.py +--- numpy-1.8.1.orig/numpy/distutils/unixccompiler.py 2014-03-25 20:43:23.000000000 +0100 ++++ numpy-1.8.1-2/numpy/distutils/unixccompiler.py 2014-07-08 15:34:01.924063926 +0200 +@@ -111,3 +111,12 @@ + + replace_method(UnixCCompiler, 'create_static_lib', + UnixCCompiler_create_static_lib) ++ ++def UnixCCompiler_library_option(self, lib): ++ if lib[0]=='-': ++ return lib ++ else: ++ return "-l" + lib ++ ++replace_method(UnixCCompiler, 'library_option', ++ UnixCCompiler_library_option) diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.8.2-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/n/numpy/numpy-1.8.2-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..db3bc90ff5 --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.8.2-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,26 @@ +name = 'numpy' +version = '1.8.2' + +homepage = 'http://www.numpy.org' +description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: + a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran + code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, + NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be + defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCE_TAR_GZ] + +patches = ['numpy-1.8.1-mkl.patch'] + +python = 'Python' +pyver = '2.7.9' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/sympy/sympy-0.7.6-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/sympy/sympy-0.7.6-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..4722866acf --- /dev/null +++ b/easybuild/easyconfigs/s/sympy/sympy-0.7.6-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,32 @@ +easyblock = "PythonPackage" + +name = 'sympy' +version = '0.7.6' + +homepage = 'http://sympy.org/' +description = """SymPy is a Python library for symbolic mathematics. It aims to + become a full-featured computer algebra system (CAS) while keeping the code as + simple as possible in order to be comprehensible and easily extensible. SymPy + is written entirely in Python and does not require any external libraries.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['https://github.com/sympy/sympy/releases/download/sympy-%(version)s/'] +sources = [SOURCE_TAR_GZ] + +python = "Python" +pythonversion = '2.7.9' +pythonshortversion = '.'.join(pythonversion.split('.')[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [(python, pythonversion)] + +runtest = 'python setup.py test' + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/sympy' % pythonshortversion], +} + +moduleclass = 'math' -- GitLab From 94b31baab93d43b55ee13dab50729911dcc0e85a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 27 Mar 2015 15:27:23 +0100 Subject: [PATCH 0885/1217] add easyconfigs for gmsh and getdp --- .../g/getdp/getdp-2.5.0-intel-2015a.eb | 24 +++++++++++++++++++ .../g/gmsh/gmsh-2.9.1-intel-2015a.eb | 23 ++++++++++++++++++ 2 files changed, 47 insertions(+) create mode 100644 easybuild/easyconfigs/g/getdp/getdp-2.5.0-intel-2015a.eb create mode 100644 easybuild/easyconfigs/g/gmsh/gmsh-2.9.1-intel-2015a.eb diff --git a/easybuild/easyconfigs/g/getdp/getdp-2.5.0-intel-2015a.eb b/easybuild/easyconfigs/g/getdp/getdp-2.5.0-intel-2015a.eb new file mode 100644 index 0000000000..1a8738bd04 --- /dev/null +++ b/easybuild/easyconfigs/g/getdp/getdp-2.5.0-intel-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'CMakeMake' + +name = 'getdp' +version = '2.5.0' +versionsuffix = '-Python-2.7.9' + +homepage = 'http://geuz.org/getdp' +description = """GetDP is an open source finite element solver using mixed elements to discretize de Rham-type + complexes in one, two and three dimensions.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://geuz.org/getdp/src/'] +sources = ['%(name)s-%(version)s-source.tgz'] + +dependencies = [ + ('GSL', '1.16'), + ('PETSc', '3.5.3', versionsuffix), + ('SLEPc', '3.5.3', versionsuffix), +] + +separate_build_dir = True + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/gmsh/gmsh-2.9.1-intel-2015a.eb b/easybuild/easyconfigs/g/gmsh/gmsh-2.9.1-intel-2015a.eb new file mode 100644 index 0000000000..00701f2eb2 --- /dev/null +++ b/easybuild/easyconfigs/g/gmsh/gmsh-2.9.1-intel-2015a.eb @@ -0,0 +1,23 @@ +easyblock = 'CMakeMake' + +name = 'gmsh' +version = '2.9.1' + +homepage = 'http://geuz.org/gmsh' +description = """Gmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://geuz.org/gmsh/src/'] +sources = ['%(name)s-%(version)s-source.tgz'] + +separate_build_dir = True + +configopts = '-DENABLE_FLTK=0' + +sanity_check_paths = { + 'files': ['bin/gmsh'], + 'dirs': [], +} + +moduleclass = 'math' -- GitLab From c53159e9b1f6e748446c586a61d452b1256708d0 Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Fri, 27 Mar 2015 21:33:13 -0400 Subject: [PATCH 0886/1217] adding a couple of dummy versions --- .../r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0.eb | 38 +++++++++++++++++++ easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb | 33 ++++++++++++++++ 2 files changed, 71 insertions(+) create mode 100644 easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0.eb create mode 100644 easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb diff --git a/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0.eb b/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0.eb new file mode 100644 index 0000000000..065470ac86 --- /dev/null +++ b/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0.eb @@ -0,0 +1,38 @@ +easyblock = 'Bundle' + +name = 'Ruby-FPM' +rubyver = '2.1.5' +version = '%s-1.0.0' % rubyver + +homepage = 'https://www.ruby-lang.org' +description = """Ruby is a dynamic, open source programming language with + a focus on simplicity and productivity. It has an elegant syntax that is + natural to read and easy to write.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# these are extensions for Ruby +exts_defaultclass = 'RubyGem' +exts_filter = ("gem list %(ext_name)s -i", "") + +dependencies = [ + ('Ruby', rubyver), +] + +name_tmpl = '%(name)s-%(version)s.gem' +ext_options = { + 'source_urls': [ + 'http://rubygems.org/downloads/', # gem archive + ], + 'source_tmpl': name_tmpl, +} +exts_list = [ + ('ffi', '1.9.6', ext_options), + ('childprocess', '0.5.5', ext_options), + ('json', '1.8.2', ext_options), + ('cabin', '0.7.1', ext_options), + ('backports', '3.6.4', ext_options), + ('arr-pm', '0.0.9', ext_options), + ('clamp', '0.6.4', ext_options), + ('fpm', '1.3.3', ext_options), +] diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb new file mode 100644 index 0000000000..cce8d3ff7e --- /dev/null +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb @@ -0,0 +1,33 @@ +# With <3 for EasyBuild +# +# EasyConfig for Ruby 2.1: +# ---------------------------------------------------------------------------- +# Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH +# License: MIT +# Authors: Aaron Zauner +# ---------------------------------------------------------------------------- + +name = 'Ruby' +version = '2.1.5' + +homepage = 'https://www.ruby-lang.org' +description = """Ruby is a dynamic, open source programming language with + a focus on simplicity and productivity. It has an elegant syntax that is + natural to read and easy to write.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://cache.ruby-lang.org/pub/ruby/'] + +sanity_check_paths = { + 'files': ['bin/ruby', 'bin/rake', 'bin/gem', 'bin/testrb', 'bin/erb', + 'bin/ri', 'bin/irb', 'bin/rdoc', 'lib/libruby.so.2.1.0', + 'lib/libruby-static.a', 'lib/libruby.so'], + 'dirs': ['lib/ruby/2.1.0', 'lib/ruby/gems', 'lib/pkgconfig', 'include/ruby-2.1.0'] +} + +configopts = "--disable-install-doc --enable-shared" + +moduleclass = 'lang' + -- GitLab From 8275b0d35d1500a2ed85288af4d8ef3003e27986 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 30 Mar 2015 16:06:09 +0200 Subject: [PATCH 0887/1217] include pkg-config as build dep for mc --- .../easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb | 1 + .../p/pkg-config/pkg-config-0.28-GCC-4.9.2.eb | 27 +++++++++++++++++++ 2 files changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb b/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb index 893cc852b8..96e39f3ada 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.8.13-GCC-4.9.2.eb @@ -29,6 +29,7 @@ dependencies = [ ] builddependencies = [ + ('pkg-config', '0.28'), ('Automake', '1.15'), ('libtool', '2.4.5'), ] diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-GCC-4.9.2.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-GCC-4.9.2.eb new file mode 100644 index 0000000000..68447b95f4 --- /dev/null +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-GCC-4.9.2.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'pkg-config' +version = '0.28' + +homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' +description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the + correct compiler options on the command line so an application can use + gcc -o test test.c `pkg-config --libs --cflags glib-2.0` + for instance, rather than hard-coding values on where to find glib (or other libraries).""" + +# don't use PAX, it might break. +tar_config_opts = True + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://pkgconfig.freedesktop.org/releases/'] + +configopts = " --with-internal-glib" + +sanity_check_paths = { + 'files': ['bin/pkg-config'], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From 1359b212eac21b78f957155054558aa2edd0c3fc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 30 Mar 2015 17:06:29 +0200 Subject: [PATCH 0888/1217] fix source_urls for libevent --- .../easyconfigs/l/libevent/libevent-2.0.21-intel-2014b.eb | 5 ++++- .../easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb | 5 ++++- 2 files changed, 8 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/l/libevent/libevent-2.0.21-intel-2014b.eb b/easybuild/easyconfigs/l/libevent/libevent-2.0.21-intel-2014b.eb index 682b29be82..71829b4c94 100644 --- a/easybuild/easyconfigs/l/libevent/libevent-2.0.21-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libevent/libevent-2.0.21-intel-2014b.eb @@ -10,7 +10,10 @@ description = """The libevent API provides a mechanism to execute a callback fun toolchain = {'name': 'intel', 'version': '2014b'} -source_urls = ['https://github.com/downloads/libevent/libevent/'] +source_urls = [ + 'https://sourceforge.net/projects/levent/files/%(name)s/%(name)s-%(version_major_minor)s/', + 'https://github.com/downloads/%(name)s/%(name)s/', +] sources = ['%(name)s-%(version)s-stable.tar.gz'] moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb index 78c88db863..75b8531ffa 100644 --- a/easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/l/libevent/libevent-2.0.22-GCC-4.9.2.eb @@ -10,7 +10,10 @@ description = """The libevent API provides a mechanism to execute a callback fun toolchain = {'name': 'GCC', 'version': '4.9.2'} +source_urls = [ + 'https://sourceforge.net/projects/levent/files/%(name)s/%(name)s-%(version_major_minor)s/', + 'https://github.com/downloads/%(name)s/%(name)s/', +] sources = ['%(name)s-%(version)s-stable.tar.gz'] -source_urls = ['https://sourceforge.net/projects/levent/files/%(name)s/%(name)s-%version_major_minor)s/'] moduleclass = 'lib' -- GitLab From 3ba4692ba8994664497e8b9811389227242d808b Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Mon, 30 Mar 2015 20:59:47 -0400 Subject: [PATCH 0889/1217] adding ncurses dep --- easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb b/easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb index 99ee62947e..cd1b05dd17 100644 --- a/easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb @@ -14,6 +14,7 @@ sources = [SOURCE_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] dependencies = [ + ('ncurses', '5.9'), ('libevent', '2.0.22'), ] -- GitLab From 50f6b4524071ca159ef8c2d65aa48c1866d3a10e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 31 Mar 2015 11:21:44 +0200 Subject: [PATCH 0890/1217] add easyconfigs for AFNI, PyQt and SIP with intel/2015a --- ...NI-linux_openmp_64-intel-2015a-20141023.eb | 33 +++++++++++++++++ .../PyQt-4.11.3-intel-2015a-Python-2.7.9.eb | 36 +++++++++++++++++++ .../SIP-4.16.4-intel-2015a-Python-2.7.9.eb | 25 +++++++++++++ 3 files changed, 94 insertions(+) create mode 100644 easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-intel-2015a-20141023.eb create mode 100644 easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/s/SIP/SIP-4.16.4-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-intel-2015a-20141023.eb b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-intel-2015a-20141023.eb new file mode 100644 index 0000000000..f082a4fbeb --- /dev/null +++ b/easybuild/easyconfigs/a/AFNI/AFNI-linux_openmp_64-intel-2015a-20141023.eb @@ -0,0 +1,33 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Bart Verleye +# Center for eResearch, Auckland +easyblock = 'PackedBinary' + +name = 'AFNI' +version = 'linux_openmp_64' +versionsuffix = '-20141023' + +homepage = 'http://afni.nimh.nih.gov' +description = """Free software for analysis and display of FMRI data """ + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://afni.nimh.nih.gov/pub/dist/tgz/'] +sources = ['%(version)s.tgz'] +checksums = ['8800092268d8bfc05611515b0795dae2'] + +dependencies = [ + ('R', '3.1.2'), + ('PyQt', '4.11.3', '-Python-2.7.9'), + ('tcsh', '6.18.01'), + ('libXp', '1.0.3'), +] + +modextrapaths = {'PATH': ['']} + +sanity_check_paths = { + 'files': ['afni'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..aab3898aa9 --- /dev/null +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Bart Verleye +# Center for eResearch, Auckland +easyblock = 'ConfigureMakePythonPackage' + +name = 'PyQt' +version = '4.11.3' + +homepage = 'http://www.riverbankcomputing.co.uk/software/pyqt' +description = """PyQt is a set of Python v2 and v3 bindings for Digia's Qt application framework.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = ['%(name)s-x11-gpl-%(version)s.tar.gz'] +source_urls = ['http://sourceforge.net/projects/pyqt/files/PyQt4/PyQt-%(version)s'] + +python = 'Python' +pyver = '2.7.9' +pythonshortver = '.'.join(pyver.split('.')[:2]) +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), + ('SIP', '4.16.4', versionsuffix), + ('Qt', '4.8.6'), +] + +configopts = "configure-ng.py --confirm-license" +configopts += " --destdir=%%(installdir)s/lib/python%s/site-packages " % pythonshortver +configopts += " --no-sip-files" + +options = {'modulename': 'PyQt4'} + +modextrapaths = {'PYTHONPATH': 'lib/python%s/site-packages' % pythonshortver} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..2de546ee64 --- /dev/null +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,25 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Bart Verleye +# Center for eResearch, Auckland +easyblock = 'ConfigureMakePythonPackage' + +name = 'SIP' +version = '4.16.4' + +homepage = 'http://www.riverbankcomputing.com/software/sip/' +description = """SIP is a tool that makes it very easy to create Python bindings for C and C++ libraries.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://sourceforge.net/projects/pyqt/files/sip/sip-%(version)s'] + +python = 'Python' +pyver = '2.7.9' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [(python, pyver)] + +configopts = "configure.py" + +moduleclass = 'lang' -- GitLab From d31e2766fa8c2ddce8d0102126ed46833424ba8b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 31 Mar 2015 12:59:48 +0200 Subject: [PATCH 0891/1217] add easyconfig for extra R extensions that require additional dependencies --- .../c/cURL/cURL-7.41.0-intel-2015a.eb | 30 ++++++ .../o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb | 24 +++++ .../R-extra-20150323-intel-2015a-R-3.1.3.eb | 99 +++++++++++++++++++ .../t/Tcl/Tcl-8.6.4-intel-2015a.eb | 25 +++++ .../easyconfigs/t/Tk/Tk-8.6.4-intel-2015a.eb | 24 +++++ 5 files changed, 202 insertions(+) create mode 100644 easybuild/easyconfigs/c/cURL/cURL-7.41.0-intel-2015a.eb create mode 100644 easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb create mode 100644 easybuild/easyconfigs/r/R-extra/R-extra-20150323-intel-2015a-R-3.1.3.eb create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2015a.eb create mode 100644 easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a.eb diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.41.0-intel-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.41.0-intel-2015a.eb new file mode 100644 index 0000000000..7c9526c34b --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.41.0-intel-2015a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.41.0' + +homepage = 'http://curl.haxx.se' +description = """libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, + POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports + SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, + proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, + Kerberos), file transfer resume, http proxy tunneling and more.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://curl.haxx.se/download/'] + +# dependencies = [('OpenSSL', '1.0.1m')] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# configopts = "--with-ssl=$EBROOTOPENSSL" + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb new file mode 100644 index 0000000000..ba650f6541 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb @@ -0,0 +1,24 @@ +name = 'OpenSSL' +version = '1.0.1m' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +patches = [ + 'OpenSSL-1.0.1f_icc-fixes.patch', + 'OpenSSL-1.0.1i-fix_parallel_build-1.patch', +] + +dependencies = [('zlib', '1.2.8')] + +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/r/R-extra/R-extra-20150323-intel-2015a-R-3.1.3.eb b/easybuild/easyconfigs/r/R-extra/R-extra-20150323-intel-2015a-R-3.1.3.eb new file mode 100644 index 0000000000..7ec2e95168 --- /dev/null +++ b/easybuild/easyconfigs/r/R-extra/R-extra-20150323-intel-2015a-R-3.1.3.eb @@ -0,0 +1,99 @@ +easyblock = 'Bundle' + +name = 'R-extra' +version = '20150323' +rver = '3.1.3' +versionsuffix = '-R-%s' % rver + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +# these are extensions for R +exts_defaultclass = 'RPackage' +exts_filter = ("R -q --no-save", "library(%(ext_name)s)") + +dependencies = [ + ('R', rver), + ('Tcl', '8.6.4'), + ('Tk', '8.6.4'), + ('cURL', '7.41.0'), + ('libxml2', '2.9.2'), +] + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.r-project.org/src/contrib/', # current version of packages + 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': name_tmpl, +} +# Bioconductor packages have a different download url +bioconductor_options = { + 'source_urls': [ + 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', + ], + 'source_tmpl': name_tmpl, +} + +# !! order of packages is important !! +exts_list = [ + ('vegan', '2.2-1', ext_options), # requires Tcl/Tk + ('widgetTools', '1.44.0', bioconductor_options), # requires Tcl/Tk + ('RCurl', '1.95-4.5', ext_options), # requires cURL + ('XML', '3.98-1.1', ext_options), # requires libxml2 + # extensions below requires one or more extensions that have an external dependency listed above + ('picante', '1.6-2', ext_options), + ('spacodiR', '0.13.0115', ext_options), + ('picante', '1.6-2', ext_options), + ('httr', '0.6.1', ext_options), + ('tkWidgets', '1.44.0', bioconductor_options), + ('Mfuzz', '2.26.0', bioconductor_options), + ('maSigPro', '1.38.0', bioconductor_options), + ('rtracklayer', '1.26.2', bioconductor_options), + ('BSgenome', '1.34.1', bioconductor_options), + ('GEOquery', '2.32.0', bioconductor_options), + ('biomaRt', '2.22.0', bioconductor_options), + ('annotate', '1.44.0', bioconductor_options), + ('GSEABase', '1.28.0', bioconductor_options), + ('genefilter', '1.48.1', bioconductor_options), + ('Category', '2.32.0', bioconductor_options), + ('GOstats', '2.32.0', bioconductor_options), + ('geneplotter', '1.44.0', bioconductor_options), + ('DESeq2', '1.6.3', bioconductor_options), + ('GenomicFeatures', '1.18.4', bioconductor_options), + ('VariantAnnotation', '1.12.9', bioconductor_options), + ('biovizBase', '1.14.1', bioconductor_options), + ('OrganismDbi', '1.8.1', bioconductor_options), + ('ggbio', '1.14.0', bioconductor_options), + ('ReportingTools', '2.6.0', bioconductor_options), + ('affycoretools', '1.38.0', bioconductor_options), + ('AgiMicroRna', '2.16.0', bioconductor_options), + ('DESeq', '1.18.0', bioconductor_options), + ('GenomeGraphs', '1.26.0', bioconductor_options), + ('geneLenDataBase', '1.1.1', bioconductor_options), + ('goseq', '1.18.0', bioconductor_options), + ('TxDb.Hsapiens.UCSC.hg19.knownGene', '3.0.0', bioconductor_options), + ('Homo.sapiens', '1.1.2', bioconductor_options), + ('KEGGgraph', '1.24.0', bioconductor_options), + ('KEGGREST', '1.6.4', bioconductor_options), + ('KEGGprofile', '1.8.0', bioconductor_options), + ('minfi', '1.12.0', bioconductor_options), + ('methylumi', '2.12.0', bioconductor_options), + ('lumi', '2.18.0', bioconductor_options), + ('Gviz', '1.10.10', bioconductor_options), + ('methyAnalysis', '1.8.0', bioconductor_options), + ('pathview', '1.6.0', bioconductor_options), + ('SPIA', '2.18.0', bioconductor_options), + ('cummeRbund', '2.8.2', bioconductor_options), + ('spliceR', '1.8.0', bioconductor_options), +] + +modextrapaths = {'R_LIBS': ''} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2015a.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2015a.eb new file mode 100644 index 0000000000..b2673863fd --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.4' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +dependencies = [ + ('zlib', '1.2.8'), +] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a.eb new file mode 100644 index 0000000000..de684154a7 --- /dev/null +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'Tk' +version = '8.6.4' + +homepage = 'http://www.tcl.tk/' +description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building + a graphical user interface (GUI) in many different programming languages.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +dependencies = [ + ('Tcl', version), + ('libX11', '1.6.3', '-Python-2.7.9'), +] + +configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib CFLAGS="-I$EBROOTTCL/include"' + +start_dir = 'unix' + +moduleclass = 'vis' -- GitLab From 7107eab21457aab90348ddca0c6ce07219e29c0c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 31 Mar 2015 16:22:22 +0200 Subject: [PATCH 0892/1217] use bare Python as a build dep for GLib --- easybuild/easyconfigs/g/GLib/GLib-2.42.1-GCC-4.9.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.42.1-GCC-4.9.2.eb b/easybuild/easyconfigs/g/GLib/GLib-2.42.1-GCC-4.9.2.eb index 78ac531e4f..8db2b243a8 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.42.1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.42.1-GCC-4.9.2.eb @@ -16,6 +16,6 @@ dependencies = [ ('libffi', '3.2.1'), ('gettext', '0.19.4'), ] -builddependencies = [('Python', '2.7.9', '', ('foss', '2015a'))] +builddependencies = [('Python', '2.7.9', '-bare')] moduleclass = 'vis' -- GitLab From eb47e55a0f3cf3e335995609cad4c2dfdb25d3bc Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Wed, 1 Apr 2015 15:47:24 +0200 Subject: [PATCH 0893/1217] added seqtk --- .../s/seqtk/seqtk-sgdp-intel-2015a.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb diff --git a/easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb b/easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb new file mode 100644 index 0000000000..df4c09e56a --- /dev/null +++ b/easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'MakeCp' +name = 'seqtk' +version = 'sgdp' + +homepage = 'https://github.com/lh3/seqtk/' +description = """Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = ['%(version)s.tar.gz'] +source_urls = ['https://github.com/lh3/seqtk/archive/'] + +buildopts = 'CC="$CC" CFLAGS="$CLFAGS"' + +files_to_copy = ["seqtk", "trimadap"] +sanity_check_paths = { + 'files': files_to_copy, + 'dirs': [], +} +modextrapaths = { + 'PATH': ['$root'], +} + + +moduleclass = 'bio' -- GitLab From 368a89ac56362c72dacf11663a0d3edb1b40edc0 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Wed, 1 Apr 2015 16:02:03 +0200 Subject: [PATCH 0894/1217] Update seqtk-sgdp-intel-2015a.eb --- easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb b/easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb index df4c09e56a..633a514e9d 100644 --- a/easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb +++ b/easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb @@ -1,9 +1,11 @@ easyblock = 'MakeCp' + name = 'seqtk' version = 'sgdp' homepage = 'https://github.com/lh3/seqtk/' -description = """Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip.""" +description = """Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. + It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip.""" toolchain = {'name': 'intel', 'version': '2015a'} @@ -17,9 +19,9 @@ sanity_check_paths = { 'files': files_to_copy, 'dirs': [], } + modextrapaths = { 'PATH': ['$root'], } - moduleclass = 'bio' -- GitLab From 65c508d1923c2eaed963bad9660e8ccb05cc3544 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Wed, 1 Apr 2015 16:02:11 +0200 Subject: [PATCH 0895/1217] Update seqtk-sgdp-intel-2015a.eb --- easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb b/easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb index 633a514e9d..4aa619b6d7 100644 --- a/easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb +++ b/easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb @@ -15,6 +15,7 @@ source_urls = ['https://github.com/lh3/seqtk/archive/'] buildopts = 'CC="$CC" CFLAGS="$CLFAGS"' files_to_copy = ["seqtk", "trimadap"] + sanity_check_paths = { 'files': files_to_copy, 'dirs': [], -- GitLab From 59862578bf23f7600433696c48b04a67575f2126 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Wed, 1 Apr 2015 16:03:53 +0200 Subject: [PATCH 0896/1217] Update seqtk-sgdp-intel-2015a.eb --- easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb b/easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb index 4aa619b6d7..e8b719da0f 100644 --- a/easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb +++ b/easybuild/easyconfigs/s/seqtk/seqtk-sgdp-intel-2015a.eb @@ -22,7 +22,7 @@ sanity_check_paths = { } modextrapaths = { - 'PATH': ['$root'], + 'PATH': [''], } moduleclass = 'bio' -- GitLab From 8dd30b3d61c7374d592d17afd1139f0ff06d6b6d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 2 Apr 2015 11:43:37 +0200 Subject: [PATCH 0897/1217] add easyconfig for Bison v3.0.4 --- .../b/Bison/Bison-3.0.4-GCC-4.9.2.eb | 22 +++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCC-4.9.2.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCC-4.9.2.eb new file mode 100644 index 0000000000..40326aa6c3 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-GCC-4.9.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.4' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' -- GitLab From 4bcbacf1aeda60fe715922c20ef77edc3f58f326 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 2 Apr 2015 11:44:23 +0200 Subject: [PATCH 0898/1217] {tools}[intel/2015a] util-linux 2.26.1 (REVIEW) --- .../util-linux-2.26.1-intel-2015a.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb new file mode 100644 index 0000000000..5c77395971 --- /dev/null +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'util-linux' +version = '2.26.1' + +homepage = 'http://www.kernel.org/pub/linux/utils/util-linux' +description = """Set of Linux utilities""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['%s/v%%(version_major_minor)s' % homepage] +sources = [SOURCELOWER_TAR_GZ] + +# disable account related utilities (they need OS dependant pam-devel files) +# disable wall and friends (requires group changing permissions for install user) +# install systemd service files in install dir +# install bash completion files in install dir +configopts = '--disable-chfn-chsh --disable-login --disable-su ' +configopts += '--disable-wall --disable-use-tty-group ' +configopts += '--disable-makeinstall-chown --disable-makeinstall-setuid ' +configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " +configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/completions' " + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ['lib/lib%s.a' % x for x in ['blkid' , 'mount', 'uuid']], + 'dirs': ['include', 'bin', 'share', 'sbin'], +} + +moduleclass = 'tools' -- GitLab From dc686d0cce9e68dcce018c6d651a9e91e9253219 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 2 Apr 2015 11:54:57 +0200 Subject: [PATCH 0899/1217] include --without-python in util-linux easyconfig --- .../easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb index 5c77395971..b640735411 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb @@ -20,6 +20,8 @@ configopts += '--disable-wall --disable-use-tty-group ' configopts += '--disable-makeinstall-chown --disable-makeinstall-setuid ' configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/completions' " +# disable building Python bindings (since we don't include Python as a dep) +configopts += "--without-python " dependencies = [('ncurses', '5.9')] -- GitLab From eccd8d37c184e95ffaefd240d0f707d0cbeb4b69 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 2 Apr 2015 12:11:50 +0200 Subject: [PATCH 0900/1217] {vis}[intel/2015a] motif 2.3.4 with libX11 1.6.3 (REVIEW) --- .../l/libICE/libICE-1.0.9-intel-2015a.eb | 27 +++++++++++ .../l/libSM/libSM-1.2.2-intel-2015a.eb | 28 +++++++++++ .../libXt-1.1.4-intel-2015a-libX11-1.6.3.eb | 41 ++++++++++++++++ .../motif-2.3.4-intel-2015a-libX11-1.6.3.eb | 47 +++++++++++++++++++ .../x/xbitmaps/xbitmaps-1.1.1-intel-2015a.eb | 19 ++++++++ 5 files changed, 162 insertions(+) create mode 100644 easybuild/easyconfigs/l/libICE/libICE-1.0.9-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libSM/libSM-1.2.2-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2015a-libX11-1.6.3.eb create mode 100644 easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2015a-libX11-1.6.3.eb create mode 100644 easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2015a.eb diff --git a/easybuild/easyconfigs/l/libICE/libICE-1.0.9-intel-2015a.eb b/easybuild/easyconfigs/l/libICE/libICE-1.0.9-intel-2015a.eb new file mode 100644 index 0000000000..57f6a9f4e3 --- /dev/null +++ b/easybuild/easyconfigs/l/libICE/libICE-1.0.9-intel-2015a.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libICE' +version = '1.0.9' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X Inter-Client Exchange library for freedesktop.org""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +dependencies = [ + ('xtrans', '1.3.5'), +] + +builddependencies = [ + ('xproto', '7.0.27'), +] + +sanity_check_paths = { + 'files' : ['include/X11/ICE/ICE%s.h' % x for x in ['', 'conn', 'lib', 'msg', 'proto', 'util']], + 'dirs' : [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libSM/libSM-1.2.2-intel-2015a.eb b/easybuild/easyconfigs/l/libSM/libSM-1.2.2-intel-2015a.eb new file mode 100644 index 0000000000..7d8fcfe61a --- /dev/null +++ b/easybuild/easyconfigs/l/libSM/libSM-1.2.2-intel-2015a.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'libSM' +version = '1.2.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 Session Management library, which allows for applications to both manage sessions, + and make use of session managers to save and restore their state for later use.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +dependencies = [ + ('libICE', '1.0.9'), +] +builddependencies = [ + ('xproto', '7.0.27'), + ('xtrans', '1.3.5'), +] + +sanity_check_paths = { + 'files' : ['include/X11/SM/%s' % x for x in ['SM.h', 'SMlib.h', 'SMproto.h']], + 'dirs' : [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2015a-libX11-1.6.3.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2015a-libX11-1.6.3.eb new file mode 100644 index 0000000000..507c378340 --- /dev/null +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2015a-libX11-1.6.3.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'libXt' +version = '1.1.4' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """libXt provides the X Toolkit Intrinsics, an abstract widget library upon which other toolkits are + based. Xt is the basis for many toolkits, including the Athena widgets (Xaw), and LessTif (a Motif implementation).""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +libx11ver = '1.6.3' +versionsuffix = '-libX11-%s' % libx11ver +dependencies = [ + ('libSM', '1.2.2'), + ('libICE', '1.0.9'), + ('libX11', libx11ver, '-Python-2.7.9'), +] + +builddependencies = [ + ('xproto', '7.0.27'), + ('kbproto', '1.0.6'), +] + +sanity_check_paths = { + 'files' : ['include/X11/%s' % x for x in [ + 'CallbackI.h', 'CompositeP.h', 'Constraint.h', 'Core.h', 'CreateI.h', 'HookObjI.h', 'Intrinsic.h', + 'IntrinsicP.h', 'ObjectP.h', 'RectObj.h', 'ResConfigP.h', 'SelectionI.h', 'ShellI.h', 'StringDefs.h', + 'TranslateI.h', 'Vendor.h', 'Xtos.h', 'Composite.h', 'ConstrainP.h', 'ConvertI.h', 'CoreP.h', 'EventI.h', + 'InitialI.h', 'IntrinsicI.h', 'Object.h', 'PassivGraI.h', 'RectObjP.h', 'ResourceI.h', 'Shell.h', 'ShellP.h', + 'ThreadsI.h', 'VarargsI.h', 'VendorP.h', + ] + ], + 'dirs' : [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2015a-libX11-1.6.3.eb b/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2015a-libX11-1.6.3.eb new file mode 100644 index 0000000000..af0e37ef27 --- /dev/null +++ b/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2015a-libX11-1.6.3.eb @@ -0,0 +1,47 @@ +easyblock = 'ConfigureMake' + +name = 'motif' +version = '2.3.4' + +homepage = 'http://motif.ics.com/' +description = """Motif refers to both a graphical user interface (GUI) specification and the widget toolkit for building + applications that follow that specification under the X Window System on Unix and other POSIX-compliant systems. + It was the standard toolkit for the Common Desktop Environment and thus for Unix.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = ['%(name)s-%(version)s-src.tgz'] +source_urls = [SOURCEFORGE_SOURCE] + +libx11ver = '1.6.3' +versionsuffix = '-libX11-%s' % libx11ver +dependencies = [ + ('libXt', '1.1.4', versionsuffix), + ('libXau', '1.0.8'), + ('libX11', libx11ver, '-Python-2.7.9'), + ('libXext', '1.3.3'), + ('libXdmcp', '1.1.2'), + ('libpng', '1.6.16'), + ('xbitmaps', '1.1.1'), + ('freetype', '2.5.5'), + ('libjpeg-turbo', '1.4.0'), + ('bzip2', '1.0.6'), +] +builddependencies = [ + ('libtool', '2.4.5', '', ('GCC', '4.9.2')), + ('flex', '2.5.39', '', ('GCC', '4.9.2')), + ('Bison', '3.0.4', '', ('GCC', '4.9.2')), + ('util-linux', '2.26.1'), +] + +preconfigopts = "./autogen.sh && " + +# makefile is not parallel safe +parallel = 1 + +sanity_check_paths = { + 'files': ['lib/libMrm.a', 'lib/libUil.a', 'lib/libXm.a', 'bin/mwm', 'bin/uil', 'bin/xmbind'], + 'dirs': ['include/Mrm', 'include/uil', 'include/X11', 'include/Xm'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2015a.eb b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2015a.eb new file mode 100644 index 0000000000..159e636639 --- /dev/null +++ b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2015a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'xbitmaps' +version = '1.1.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """provides bitmaps for x""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/data/'] + +sanity_check_paths = { + 'files' : ['include/X11/bitmaps/gray'], + 'dirs' : [] +} + +moduleclass = 'devel' -- GitLab From 90f82fc33c672da56907eac2fa780afb122b077e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 2 Apr 2015 12:37:01 +0200 Subject: [PATCH 0901/1217] include Autotools as build dep, rather than only libtool --- .../easyconfigs/m/motif/motif-2.3.4-intel-2015a-libX11-1.6.3.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2015a-libX11-1.6.3.eb b/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2015a-libX11-1.6.3.eb index af0e37ef27..e2cf7a0446 100644 --- a/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2015a-libX11-1.6.3.eb +++ b/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2015a-libX11-1.6.3.eb @@ -28,7 +28,7 @@ dependencies = [ ('bzip2', '1.0.6'), ] builddependencies = [ - ('libtool', '2.4.5', '', ('GCC', '4.9.2')), + ('Autotools', '20150119', '', ('GCC', '4.9.2')), ('flex', '2.5.39', '', ('GCC', '4.9.2')), ('Bison', '3.0.4', '', ('GCC', '4.9.2')), ('util-linux', '2.26.1'), -- GitLab From 7bbe28c2ab6f98dd788b27abf735222961966954 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 2 Apr 2015 13:09:32 +0200 Subject: [PATCH 0902/1217] enable lowopt for motif with intel/2015a to dance around compiler segfault --- .../easyconfigs/m/motif/motif-2.3.4-intel-2015a-libX11-1.6.3.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2015a-libX11-1.6.3.eb b/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2015a-libX11-1.6.3.eb index e2cf7a0446..3197280c43 100644 --- a/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2015a-libX11-1.6.3.eb +++ b/easybuild/easyconfigs/m/motif/motif-2.3.4-intel-2015a-libX11-1.6.3.eb @@ -9,6 +9,8 @@ description = """Motif refers to both a graphical user interface (GUI) specifica It was the standard toolkit for the Common Desktop Environment and thus for Unix.""" toolchain = {'name': 'intel', 'version': '2015a'} +# use -O1 to dance around icc segfaulting +toolchainopts = {'lowopt': True} sources = ['%(name)s-%(version)s-src.tgz'] source_urls = [SOURCEFORGE_SOURCE] -- GitLab From 243d569d112dda1ce81227797bd8dee8f9a11746 Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Fri, 27 Mar 2015 16:27:48 +0100 Subject: [PATCH 0903/1217] Support for hanythingondemand. --- ...ondemand-2.2.0-intel-2015a-Python-2.7.9.eb | 35 +++++++++++++++++++ ...netaddr-0.7.13-intel-2015a-Python-2.7.9.eb | 24 +++++++++++++ ...tifaces-0.10.4-intel-2015a-Python-2.7.9.eb | 26 ++++++++++++++ 3 files changed, 85 insertions(+) create mode 100644 easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/n/netaddr/netaddr-0.7.13-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/n/netifaces/netifaces-0.10.4-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..caad6b3b27 --- /dev/null +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,35 @@ +easyblock = 'PythonPackage' + +name = 'hanythingondemand' +version = '2.2.0' + +homepage = 'https://github.com/hpcugent/hanythingondemand' +description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +It uses the Torque resource manager to do node allocation.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [ + 'https://github.com/hpcugent/hanythingondemand/archive/' +] +sources = ['%s.tar.gz' % version] + +python = 'Python' +pythonver = '2.7.9' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +installopts='--single-version-externally-managed --record=record' + +# a Python version with mpi4py and pbs_python (vsc.fancylogger) is required at runtime +dependencies = [ + (python, pythonver), + ('pbs_python', '4.3.5', versionsuffix), + ('vsc-mympirun', '3.4.2', '', True), + ('vsc-base', '1.9.1', '', True), + ('netifaces', '0.10.4', versionsuffix), + ('netaddr', '0.7.13', versionsuffix), +] + +options = {'modulename': 'hod'} + diff --git a/easybuild/easyconfigs/n/netaddr/netaddr-0.7.13-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/n/netaddr/netaddr-0.7.13-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..b1bffb16b3 --- /dev/null +++ b/easybuild/easyconfigs/n/netaddr/netaddr-0.7.13-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,24 @@ +easyblock = 'PythonPackage' + +name = 'netaddr' +version = '0.7.13' + +homepage = 'https://pypi.python.org/pypi/netaddr' +description = """Pythonic manipulation of IPv4, IPv6, CIDR, EUI and MAC network addresses""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['https://pypi.python.org/packages/source/n/netaddr/'] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonver = '2.7.9' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +dependencies = [ + (python, pythonver), +] + +options = {'modulename': 'netaddr'} + diff --git a/easybuild/easyconfigs/n/netifaces/netifaces-0.10.4-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/n/netifaces/netifaces-0.10.4-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..26d54445b2 --- /dev/null +++ b/easybuild/easyconfigs/n/netifaces/netifaces-0.10.4-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,26 @@ +easyblock = 'PythonPackage' + +name = 'netifaces' +version = '0.10.4' + +homepage = 'https://pypi.python.org/pypi/netifaces' +description = """netifaces provides a (hopefully portable-ish) way for Python +programmers to get access to a list of the network interfaces on the local +machine, and to obtain the addresses of those network interfaces.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['https://pypi.python.org/packages/source/n/%(namelower)s/'] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonver = '2.7.9' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +dependencies = [ + (python, pythonver), +] + +options = {'modulename': 'netifaces'} + -- GitLab From e5834194ea70de5b46c106e48e8dfdacdc4c0dff Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Mon, 30 Mar 2015 16:44:34 +0200 Subject: [PATCH 0904/1217] Add pbs_python since it wasn't in EB upstream. --- ...s_python-4.3.5-intel-2015a-Python-2.7.9.eb | 60 +++++++++++++++++++ 1 file changed, 60 insertions(+) create mode 100644 easybuild/easyconfigs/p/pbs_python/pbs_python-4.3.5-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/p/pbs_python/pbs_python-4.3.5-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/pbs_python/pbs_python-4.3.5-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..c47f57e15e --- /dev/null +++ b/easybuild/easyconfigs/p/pbs_python/pbs_python-4.3.5-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,60 @@ +name = 'pbs_python' +version = '4.3.5' +easyblock = 'ConfigureMake' + +homepage = '' +description = """The pbs_python package is a wrapper class for the Torque Batch System C library. With this package, you + now can write utilities and extensions in Python instead of C. This package was developed to replace xpbsmon by an + ASCII version named pbsmon. PBSQuery is also included in this package. This is a Python module built on top of the pbs + Python module to simplify querying the batch server. There are a lot of examples included in the source package. + """ + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'usempi': True} + +source_urls = [ + 'http://ftp.sara.nl/pub/outgoing/', + 'https://raw.github.com/adaptivecomputing/torque/4.2-dev/src/include/', + 'https://oss.trac.surfsara.nl/pbs_python/raw-attachment/ticket/36/', + ] + +# torque-devel is missing a log.h file we need, so we ship it. +my_startdir = "%s-%s/" % (name, version) + +place_for_include_file = "include/torque" +copy_cmd = 'mkdir -p %s%%s && cp %%%%s %s%%s ' % (my_startdir, my_startdir) +sources = [ + SOURCE_TAR_GZ, + ('log.h', copy_cmd % (place_for_include_file, place_for_include_file)), + ('pbs_wrap_4.2.c', copy_cmd % ('src', 'src')), +] +patches = [ + 'docdir.patch', + 'setup.py.in_4.2.patch', +] + +python = 'Python' +pythonver = '2.7.9' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +osdependencies = ['torque-devel'] +dependencies = [ + (python, pythonver), +] + +# this is needed for setup.py script +preconfigopts = 'export PBS_PYTHON_INCLUDEDIR="$PWD/%s" && ' % place_for_include_file +configopts = "--datarootdir=%(installdir)s --docdir=%(installdir)s" +prebuildopts = ' %s export CFLAGS="$CFLAGS -I$PWD/%s -I/usr/include/torque/" && ' % (preconfigopts, place_for_include_file) +preinstallopts = prebuildopts + +pythonpath = 'lib/python%s/site-packages/' % pythonshortver +modextrapaths = {"PYTHONPATH": pythonpath} + +sanity_check_paths = { + 'files': [], + 'dirs': ["%spbs" % pythonpath] +} + +moduleclass = 'tools' -- GitLab From 3ec8c9adf9bf3ff6729a9f254be9def38e9a99d5 Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Mon, 30 Mar 2015 16:49:38 +0200 Subject: [PATCH 0905/1217] Add patches! --- .../easyconfigs/p/pbs_python/docdir.patch | 12 ++++ .../p/pbs_python/setup.py.in_4.2.patch | 55 +++++++++++++++++++ 2 files changed, 67 insertions(+) create mode 100644 easybuild/easyconfigs/p/pbs_python/docdir.patch create mode 100644 easybuild/easyconfigs/p/pbs_python/setup.py.in_4.2.patch diff --git a/easybuild/easyconfigs/p/pbs_python/docdir.patch b/easybuild/easyconfigs/p/pbs_python/docdir.patch new file mode 100644 index 0000000000..7c012d8e84 --- /dev/null +++ b/easybuild/easyconfigs/p/pbs_python/docdir.patch @@ -0,0 +1,12 @@ +--- Makefile.in.orig 2013-11-25 16:19:27.813530658 +0100 ++++ Makefile.in 2013-11-25 16:19:41.980755196 +0100 +@@ -5,7 +5,7 @@ + exec_prefix=$(PREFIX) + BINDIR=$(PREFIX)/bin + +-DOCDIR=/usr/share/doc/pbs-python ++DOCDIR=@docdir@ + EXAMPLES=$(DOCDIR)/examples + + .PHONY: install pythonlib +~ diff --git a/easybuild/easyconfigs/p/pbs_python/setup.py.in_4.2.patch b/easybuild/easyconfigs/p/pbs_python/setup.py.in_4.2.patch new file mode 100644 index 0000000000..978ba571fd --- /dev/null +++ b/easybuild/easyconfigs/p/pbs_python/setup.py.in_4.2.patch @@ -0,0 +1,55 @@ +diff -uN pbs_python-4.3.5.orig/setup.py.in pbs_python-4.3.5/setup.py.in +--- pbs_python-4.3.5.orig/setup.py.in 2013-12-05 19:49:17.601962399 +0100 ++++ pbs_python-4.3.5/setup.py.in 2013-12-05 19:49:45.713469496 +0100 +@@ -7,8 +7,10 @@ + + import sys + import os ++import glob + +-from distutils.core import setup, Extension ++from distutils.core import setup, Extension ++from distutils.version import LooseVersion + + # Strip off the -L it is also added by the python setup tools + # +@@ -25,13 +27,6 @@ + ### Make symlinks to right torque version + # + VERSION = "@pbs_version@" +-tmp = VERSION.split('.') +- +-major_version = int(tmp[0]) +-minor_version = int(tmp[1]) +-#build_version = int(tmp[2]) +-build_version = int(tmp[2].split('-')[0]) +- + + os.chdir('src') + +@@ -43,7 +38,23 @@ + except OSError: + pass + +-if major_version >= 2 and minor_version >= 4 and build_version >= 7: ++if LooseVersion(VERSION) >= LooseVersion('4.2'): ++ inc=os.environ.get('PBS_PYTHON_INCLUDEDIR','/usr/include/torque') ++ os.environ['CC']=os.environ['CXX'] ++ os.environ['CFLAGS']=' '.join(os.environ.get('CFLAGS','').split(' ')+['-I%s'%inc]) ++ ++ if not os.path.exists(os.path.join(inc,'log.h')): ++ print 'Failed to find log.h in inlcude dir %s. (Set incude dir via PBS_PYTHON_INCLUDEDIR variable)'%inc ++ sys.exit(2) ++ ++ for fn in glob.glob('*.h'): ++ os.remove(fn) ++ ++ os.symlink('pbs_wrap_4.2.c', 'pbs_wrap.c') ++ os.symlink('pbs_2.4.py', 'pbs.py') ++ ++ TORQUE_VERSION='TORQUE_4_2' ++elif LooseVersion(VERSION) >= LooseVersion('2.4.7'): + os.symlink('pbs_wrap_2.4.c', 'pbs_wrap.c') + os.symlink('pbs_2.4.py', 'pbs.py') + TORQUE_VERSION='TORQUE_2_4' + -- GitLab From 34c9845a27e6d0d1be0bc06158337df19b235e90 Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Tue, 31 Mar 2015 11:40:11 +0200 Subject: [PATCH 0906/1217] Add vsc-mympirun and vsc-base files for hanythingondemand. --- .../easyconfigs/v/vsc-base/vsc-base-1.9.1.eb | 19 ++++++++++++++ .../v/vsc-mympirun/vsc-mympirun-3.4.2.eb | 25 +++++++++++++++++++ 2 files changed, 44 insertions(+) create mode 100644 easybuild/easyconfigs/v/vsc-base/vsc-base-1.9.1.eb create mode 100755 easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2.eb diff --git a/easybuild/easyconfigs/v/vsc-base/vsc-base-1.9.1.eb b/easybuild/easyconfigs/v/vsc-base/vsc-base-1.9.1.eb new file mode 100644 index 0000000000..8fc4fb35d9 --- /dev/null +++ b/easybuild/easyconfigs/v/vsc-base/vsc-base-1.9.1.eb @@ -0,0 +1,19 @@ +easyblock = 'VersionIndependentPythonPackage' +name = 'vsc-base' +version = "1.9.1" # tweaked by EasyBuild (was: '1.7.3') + +homepage = 'http://hpcugent.github.com/vsc-mympirun/' +description = """VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent.""" + +# we build this to work with every python version +toolchain = {'name': 'dummy', 'version': 'dummy'} + + +sources = [SOURCE_TAR_GZ] +source_urls = [ + 'https://github.com/hpcugent/vsc-base/archive/', +] + +options = {'modulename': 'vsc.utils'} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2.eb b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2.eb new file mode 100755 index 0000000000..f471f436a3 --- /dev/null +++ b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2.eb @@ -0,0 +1,25 @@ +easyblock = 'VSCPythonPackage' + +name = 'vsc-mympirun' +version = '3.4.2' + +homepage = 'http://hpcugent.github.com/vsc-mympirun/' +description = """VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent.""" + +# we build this to work with every python version +toolchain = {'name': 'dummy', 'version': ''} + +sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/hpcugent/vsc-mympirun/archive/'] + +dependencies = [ + ('vsc-base', '1.9.1'), + ('setuptools', '1.4.2'), +] + +# we ship something in bin/fake +modextrapaths = {'PATH': 'bin/fake'} + +options = {'modulename': 'vsc.mympirun'} + +moduleclass = 'tools' -- GitLab From 7e44e4a88c86c6680629c91baffef7d471f989da Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Tue, 31 Mar 2015 14:15:51 +0200 Subject: [PATCH 0907/1217] Add moduleclass to the .eb files. --- .../hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb | 1 + .../n/netaddr/netaddr-0.7.13-intel-2015a-Python-2.7.9.eb | 1 + .../n/netifaces/netifaces-0.10.4-intel-2015a-Python-2.7.9.eb | 1 + 3 files changed, 3 insertions(+) diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb index caad6b3b27..fbd087f56f 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb @@ -33,3 +33,4 @@ dependencies = [ options = {'modulename': 'hod'} +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/netaddr/netaddr-0.7.13-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/n/netaddr/netaddr-0.7.13-intel-2015a-Python-2.7.9.eb index b1bffb16b3..7a57c70dfb 100644 --- a/easybuild/easyconfigs/n/netaddr/netaddr-0.7.13-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/n/netaddr/netaddr-0.7.13-intel-2015a-Python-2.7.9.eb @@ -22,3 +22,4 @@ dependencies = [ options = {'modulename': 'netaddr'} +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/netifaces/netifaces-0.10.4-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/n/netifaces/netifaces-0.10.4-intel-2015a-Python-2.7.9.eb index 26d54445b2..f15deeb6e3 100644 --- a/easybuild/easyconfigs/n/netifaces/netifaces-0.10.4-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/n/netifaces/netifaces-0.10.4-intel-2015a-Python-2.7.9.eb @@ -24,3 +24,4 @@ dependencies = [ options = {'modulename': 'netifaces'} +moduleclass = 'tools' -- GitLab From ba2fd41945cd0ed98486d1044ec15daec0e0d491 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 1 Apr 2015 11:55:55 +0200 Subject: [PATCH 0908/1217] bump netaddr to 0.7.14 --- .../hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb | 2 +- ...thon-2.7.9.eb => netaddr-0.7.14-intel-2015a-Python-2.7.9.eb} | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) rename easybuild/easyconfigs/n/netaddr/{netaddr-0.7.13-intel-2015a-Python-2.7.9.eb => netaddr-0.7.14-intel-2015a-Python-2.7.9.eb} (96%) diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb index fbd087f56f..c74a578c62 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb @@ -28,7 +28,7 @@ dependencies = [ ('vsc-mympirun', '3.4.2', '', True), ('vsc-base', '1.9.1', '', True), ('netifaces', '0.10.4', versionsuffix), - ('netaddr', '0.7.13', versionsuffix), + ('netaddr', '0.7.14', versionsuffix), ] options = {'modulename': 'hod'} diff --git a/easybuild/easyconfigs/n/netaddr/netaddr-0.7.13-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/n/netaddr/netaddr-0.7.14-intel-2015a-Python-2.7.9.eb similarity index 96% rename from easybuild/easyconfigs/n/netaddr/netaddr-0.7.13-intel-2015a-Python-2.7.9.eb rename to easybuild/easyconfigs/n/netaddr/netaddr-0.7.14-intel-2015a-Python-2.7.9.eb index 7a57c70dfb..e729baad33 100644 --- a/easybuild/easyconfigs/n/netaddr/netaddr-0.7.13-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/n/netaddr/netaddr-0.7.14-intel-2015a-Python-2.7.9.eb @@ -1,7 +1,7 @@ easyblock = 'PythonPackage' name = 'netaddr' -version = '0.7.13' +version = '0.7.14' homepage = 'https://pypi.python.org/pypi/netaddr' description = """Pythonic manipulation of IPv4, IPv6, CIDR, EUI and MAC network addresses""" -- GitLab From ab061e012414a36e2fe76b4e7d8cc70c8cf5b00c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 1 Apr 2015 11:59:10 +0200 Subject: [PATCH 0909/1217] fix source URLs for netaddr and netifaces --- .../n/netaddr/netaddr-0.7.14-intel-2015a-Python-2.7.9.eb | 2 +- .../n/netifaces/netifaces-0.10.4-intel-2015a-Python-2.7.9.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/n/netaddr/netaddr-0.7.14-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/n/netaddr/netaddr-0.7.14-intel-2015a-Python-2.7.9.eb index e729baad33..a12196a3b8 100644 --- a/easybuild/easyconfigs/n/netaddr/netaddr-0.7.14-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/n/netaddr/netaddr-0.7.14-intel-2015a-Python-2.7.9.eb @@ -8,7 +8,7 @@ description = """Pythonic manipulation of IPv4, IPv6, CIDR, EUI and MAC network toolchain = {'name': 'intel', 'version': '2015a'} -source_urls = ['https://pypi.python.org/packages/source/n/netaddr/'] +source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] python = 'Python' diff --git a/easybuild/easyconfigs/n/netifaces/netifaces-0.10.4-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/n/netifaces/netifaces-0.10.4-intel-2015a-Python-2.7.9.eb index f15deeb6e3..26cfac901b 100644 --- a/easybuild/easyconfigs/n/netifaces/netifaces-0.10.4-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/n/netifaces/netifaces-0.10.4-intel-2015a-Python-2.7.9.eb @@ -10,7 +10,7 @@ machine, and to obtain the addresses of those network interfaces.""" toolchain = {'name': 'intel', 'version': '2015a'} -source_urls = ['https://pypi.python.org/packages/source/n/%(namelower)s/'] +source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] python = 'Python' -- GitLab From ebbacfbdc8ce8b7ef2d03c7e93123fc05b147774 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 1 Apr 2015 12:16:23 +0200 Subject: [PATCH 0910/1217] bump vsc-base to v2.0.4 --- .../hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb | 2 +- .../v/vsc-base/{vsc-base-1.9.1.eb => vsc-base-2.0.4.eb} | 8 +++----- .../easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2.eb | 4 ++-- 3 files changed, 6 insertions(+), 8 deletions(-) rename easybuild/easyconfigs/v/vsc-base/{vsc-base-1.9.1.eb => vsc-base-2.0.4.eb} (76%) diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb index c74a578c62..6e8188683e 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb @@ -26,7 +26,7 @@ dependencies = [ (python, pythonver), ('pbs_python', '4.3.5', versionsuffix), ('vsc-mympirun', '3.4.2', '', True), - ('vsc-base', '1.9.1', '', True), + ('vsc-base', '2.0.4', '', True), ('netifaces', '0.10.4', versionsuffix), ('netaddr', '0.7.14', versionsuffix), ] diff --git a/easybuild/easyconfigs/v/vsc-base/vsc-base-1.9.1.eb b/easybuild/easyconfigs/v/vsc-base/vsc-base-2.0.4.eb similarity index 76% rename from easybuild/easyconfigs/v/vsc-base/vsc-base-1.9.1.eb rename to easybuild/easyconfigs/v/vsc-base/vsc-base-2.0.4.eb index 8fc4fb35d9..24862f2519 100644 --- a/easybuild/easyconfigs/v/vsc-base/vsc-base-1.9.1.eb +++ b/easybuild/easyconfigs/v/vsc-base/vsc-base-2.0.4.eb @@ -1,6 +1,7 @@ easyblock = 'VersionIndependentPythonPackage' + name = 'vsc-base' -version = "1.9.1" # tweaked by EasyBuild (was: '1.7.3') +version = '2.0.4' homepage = 'http://hpcugent.github.com/vsc-mympirun/' description = """VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent.""" @@ -8,11 +9,8 @@ description = """VSC-tools is a set of Python libraries and scripts that are com # we build this to work with every python version toolchain = {'name': 'dummy', 'version': 'dummy'} - sources = [SOURCE_TAR_GZ] -source_urls = [ - 'https://github.com/hpcugent/vsc-base/archive/', -] +source_urls = [PYPI_SOURCE] options = {'modulename': 'vsc.utils'} diff --git a/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2.eb b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2.eb index f471f436a3..f1a22d74a6 100755 --- a/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2.eb +++ b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2.eb @@ -3,7 +3,7 @@ easyblock = 'VSCPythonPackage' name = 'vsc-mympirun' version = '3.4.2' -homepage = 'http://hpcugent.github.com/vsc-mympirun/' +homepage = 'https://github.com/hpcugent/vsc-mympirun' description = """VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent.""" # we build this to work with every python version @@ -13,7 +13,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['https://github.com/hpcugent/vsc-mympirun/archive/'] dependencies = [ - ('vsc-base', '1.9.1'), + ('vsc-base', '2.0.4'), ('setuptools', '1.4.2'), ] -- GitLab From c5cb70531a08c30bca372a3505b5f125d0645fdf Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 1 Apr 2015 14:02:22 +0200 Subject: [PATCH 0911/1217] use most recent pbs_python, use VersionIndependentPythonPackage for HOD --- ...ondemand-2.2.0-intel-2015a-Python-2.7.9.eb | 8 +-- .../easyconfigs/p/pbs_python/docdir.patch | 12 ---- ...s_python-4.3.5-intel-2015a-Python-2.7.9.eb | 60 ------------------- ...s_python-4.6.0-intel-2015a-Python-2.7.9.eb | 41 +++++++++++++ .../p/pbs_python/pbs_python-4.6.0_CC.patch | 20 +++++++ .../p/pbs_python/setup.py.in_4.2.patch | 55 ----------------- 6 files changed, 64 insertions(+), 132 deletions(-) delete mode 100644 easybuild/easyconfigs/p/pbs_python/docdir.patch delete mode 100644 easybuild/easyconfigs/p/pbs_python/pbs_python-4.3.5-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/p/pbs_python/pbs_python-4.6.0-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/p/pbs_python/pbs_python-4.6.0_CC.patch delete mode 100644 easybuild/easyconfigs/p/pbs_python/setup.py.in_4.2.patch diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb index 6e8188683e..581c70ff5f 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb @@ -1,4 +1,4 @@ -easyblock = 'PythonPackage' +easyblock = 'VersionIndependentPythonPackage' name = 'hanythingondemand' version = '2.2.0' @@ -16,15 +16,13 @@ sources = ['%s.tar.gz' % version] python = 'Python' pythonver = '2.7.9' -pythonshortver = '.'.join(pythonver.split('.')[0:2]) +pythonshortver = '.'.join(pythonver.split('.')[:2]) versionsuffix = '-%s-%s' % (python, pythonver) -installopts='--single-version-externally-managed --record=record' - # a Python version with mpi4py and pbs_python (vsc.fancylogger) is required at runtime dependencies = [ (python, pythonver), - ('pbs_python', '4.3.5', versionsuffix), + ('pbs_python', '4.6.0', versionsuffix), ('vsc-mympirun', '3.4.2', '', True), ('vsc-base', '2.0.4', '', True), ('netifaces', '0.10.4', versionsuffix), diff --git a/easybuild/easyconfigs/p/pbs_python/docdir.patch b/easybuild/easyconfigs/p/pbs_python/docdir.patch deleted file mode 100644 index 7c012d8e84..0000000000 --- a/easybuild/easyconfigs/p/pbs_python/docdir.patch +++ /dev/null @@ -1,12 +0,0 @@ ---- Makefile.in.orig 2013-11-25 16:19:27.813530658 +0100 -+++ Makefile.in 2013-11-25 16:19:41.980755196 +0100 -@@ -5,7 +5,7 @@ - exec_prefix=$(PREFIX) - BINDIR=$(PREFIX)/bin - --DOCDIR=/usr/share/doc/pbs-python -+DOCDIR=@docdir@ - EXAMPLES=$(DOCDIR)/examples - - .PHONY: install pythonlib -~ diff --git a/easybuild/easyconfigs/p/pbs_python/pbs_python-4.3.5-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/pbs_python/pbs_python-4.3.5-intel-2015a-Python-2.7.9.eb deleted file mode 100644 index c47f57e15e..0000000000 --- a/easybuild/easyconfigs/p/pbs_python/pbs_python-4.3.5-intel-2015a-Python-2.7.9.eb +++ /dev/null @@ -1,60 +0,0 @@ -name = 'pbs_python' -version = '4.3.5' -easyblock = 'ConfigureMake' - -homepage = '' -description = """The pbs_python package is a wrapper class for the Torque Batch System C library. With this package, you - now can write utilities and extensions in Python instead of C. This package was developed to replace xpbsmon by an - ASCII version named pbsmon. PBSQuery is also included in this package. This is a Python module built on top of the pbs - Python module to simplify querying the batch server. There are a lot of examples included in the source package. - """ - -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'usempi': True} - -source_urls = [ - 'http://ftp.sara.nl/pub/outgoing/', - 'https://raw.github.com/adaptivecomputing/torque/4.2-dev/src/include/', - 'https://oss.trac.surfsara.nl/pbs_python/raw-attachment/ticket/36/', - ] - -# torque-devel is missing a log.h file we need, so we ship it. -my_startdir = "%s-%s/" % (name, version) - -place_for_include_file = "include/torque" -copy_cmd = 'mkdir -p %s%%s && cp %%%%s %s%%s ' % (my_startdir, my_startdir) -sources = [ - SOURCE_TAR_GZ, - ('log.h', copy_cmd % (place_for_include_file, place_for_include_file)), - ('pbs_wrap_4.2.c', copy_cmd % ('src', 'src')), -] -patches = [ - 'docdir.patch', - 'setup.py.in_4.2.patch', -] - -python = 'Python' -pythonver = '2.7.9' -pythonshortver = '.'.join(pythonver.split('.')[0:2]) -versionsuffix = '-%s-%s' % (python, pythonver) - -osdependencies = ['torque-devel'] -dependencies = [ - (python, pythonver), -] - -# this is needed for setup.py script -preconfigopts = 'export PBS_PYTHON_INCLUDEDIR="$PWD/%s" && ' % place_for_include_file -configopts = "--datarootdir=%(installdir)s --docdir=%(installdir)s" -prebuildopts = ' %s export CFLAGS="$CFLAGS -I$PWD/%s -I/usr/include/torque/" && ' % (preconfigopts, place_for_include_file) -preinstallopts = prebuildopts - -pythonpath = 'lib/python%s/site-packages/' % pythonshortver -modextrapaths = {"PYTHONPATH": pythonpath} - -sanity_check_paths = { - 'files': [], - 'dirs': ["%spbs" % pythonpath] -} - -moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/pbs_python/pbs_python-4.6.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/pbs_python/pbs_python-4.6.0-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..2b1f46d33d --- /dev/null +++ b/easybuild/easyconfigs/p/pbs_python/pbs_python-4.6.0-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'pbs_python' +version = '4.6.0' + +homepage = 'https://oss.trac.surfsara.nl/pbs_python' +description = """The pbs_python package is a wrapper class for the Torque C library. With this package you now can + write utilities/extensions in Python instead of C. We developed this package because we want to replace xpbsmon by + an ascii version named pbsmon. PBSQuery is also included in this package. This is a python module build on top of + the pbs python module to simplify querying the batch server, eg: how many jobs, how many nodes, ...""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://ftp.sara.nl/pub/outgoing/'] +sources = [SOURCE_TAR_GZ] + +patches = ['pbs_python-%(version)s_CC.patch'] + +python = 'Python' +pythonver = '2.7.9' +pythonshortver = '.'.join(pythonver.split('.')[:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +dependencies = [(python, pythonver)] + +osdependencies = ['torque-devel'] + +# this is needed for setup.py script +configopts = "--datarootdir=%(installdir)s --docdir=%(installdir)s" +prebuildopts = 'export CFLAGS="$CFLAGS -I/usr/include/torque/" && ' +preinstallopts = prebuildopts + +pythonpath = 'lib/python%s/site-packages' % pythonshortver +modextrapaths = {"PYTHONPATH": pythonpath} + +sanity_check_paths = { + 'files': [], + 'dirs': ["%s/pbs" % pythonpath] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/pbs_python/pbs_python-4.6.0_CC.patch b/easybuild/easyconfigs/p/pbs_python/pbs_python-4.6.0_CC.patch new file mode 100644 index 0000000000..00d8259263 --- /dev/null +++ b/easybuild/easyconfigs/p/pbs_python/pbs_python-4.6.0_CC.patch @@ -0,0 +1,20 @@ +--- pbs_python-4.6.0/setup.py.in.orig 2015-04-01 13:51:18.158956461 +0200 ++++ pbs_python-4.6.0/setup.py.in 2015-04-01 13:52:02.249359723 +0200 +@@ -37,7 +37,7 @@ + if LooseVersion(VERSION) >= LooseVersion('5.0'): + + inc=os.environ.get('PBS_PYTHON_INCLUDEDIR','/usr/include/torque') +- os.environ['CC']='g++' ++ os.environ['CC']= os.environ.get('CXX', 'g++') + os.environ['CFLAGS']=' '.join(os.environ.get('CFLAGS','').split(' ')+['-I%s'%inc]) + + if not os.path.exists(os.path.join(inc,'log.h')): +@@ -55,7 +55,7 @@ + elif LooseVersion(VERSION) >= LooseVersion('4.2'): + + inc=os.environ.get('PBS_PYTHON_INCLUDEDIR','/usr/include/torque') +- os.environ['CC']='g++' ++ os.environ['CC']= os.environ.get('CXX', 'g++') + os.environ['CFLAGS']=' '.join(os.environ.get('CFLAGS','').split(' ')+['-I%s'%inc]) + + if not os.path.exists(os.path.join(inc,'log.h')): diff --git a/easybuild/easyconfigs/p/pbs_python/setup.py.in_4.2.patch b/easybuild/easyconfigs/p/pbs_python/setup.py.in_4.2.patch deleted file mode 100644 index 978ba571fd..0000000000 --- a/easybuild/easyconfigs/p/pbs_python/setup.py.in_4.2.patch +++ /dev/null @@ -1,55 +0,0 @@ -diff -uN pbs_python-4.3.5.orig/setup.py.in pbs_python-4.3.5/setup.py.in ---- pbs_python-4.3.5.orig/setup.py.in 2013-12-05 19:49:17.601962399 +0100 -+++ pbs_python-4.3.5/setup.py.in 2013-12-05 19:49:45.713469496 +0100 -@@ -7,8 +7,10 @@ - - import sys - import os -+import glob - --from distutils.core import setup, Extension -+from distutils.core import setup, Extension -+from distutils.version import LooseVersion - - # Strip off the -L it is also added by the python setup tools - # -@@ -25,13 +27,6 @@ - ### Make symlinks to right torque version - # - VERSION = "@pbs_version@" --tmp = VERSION.split('.') -- --major_version = int(tmp[0]) --minor_version = int(tmp[1]) --#build_version = int(tmp[2]) --build_version = int(tmp[2].split('-')[0]) -- - - os.chdir('src') - -@@ -43,7 +38,23 @@ - except OSError: - pass - --if major_version >= 2 and minor_version >= 4 and build_version >= 7: -+if LooseVersion(VERSION) >= LooseVersion('4.2'): -+ inc=os.environ.get('PBS_PYTHON_INCLUDEDIR','/usr/include/torque') -+ os.environ['CC']=os.environ['CXX'] -+ os.environ['CFLAGS']=' '.join(os.environ.get('CFLAGS','').split(' ')+['-I%s'%inc]) -+ -+ if not os.path.exists(os.path.join(inc,'log.h')): -+ print 'Failed to find log.h in inlcude dir %s. (Set incude dir via PBS_PYTHON_INCLUDEDIR variable)'%inc -+ sys.exit(2) -+ -+ for fn in glob.glob('*.h'): -+ os.remove(fn) -+ -+ os.symlink('pbs_wrap_4.2.c', 'pbs_wrap.c') -+ os.symlink('pbs_2.4.py', 'pbs.py') -+ -+ TORQUE_VERSION='TORQUE_4_2' -+elif LooseVersion(VERSION) >= LooseVersion('2.4.7'): - os.symlink('pbs_wrap_2.4.c', 'pbs_wrap.c') - os.symlink('pbs_2.4.py', 'pbs.py') - TORQUE_VERSION='TORQUE_2_4' - -- GitLab From b7aebb937fd98e5e1cbe5b6ba80ee91e3abd1af3 Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Thu, 2 Apr 2015 13:50:54 +0200 Subject: [PATCH 0912/1217] Bump hod and vsc-base for bug fixes. --- ...gondemand-2.2.1-intel-2015a-Python-2.7.9.eb} | 4 ++-- .../easyconfigs/v/vsc-base/vsc-base-2.1.2.eb | 17 +++++++++++++++++ 2 files changed, 19 insertions(+), 2 deletions(-) rename easybuild/easyconfigs/h/hanythingondemand/{hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb => hanythingondemand-2.2.1-intel-2015a-Python-2.7.9.eb} (94%) create mode 100644 easybuild/easyconfigs/v/vsc-base/vsc-base-2.1.2.eb diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.1-intel-2015a-Python-2.7.9.eb similarity index 94% rename from easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb rename to easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.1-intel-2015a-Python-2.7.9.eb index 581c70ff5f..241e630c35 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.0-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.1-intel-2015a-Python-2.7.9.eb @@ -1,7 +1,7 @@ easyblock = 'VersionIndependentPythonPackage' name = 'hanythingondemand' -version = '2.2.0' +version = '2.2.1' homepage = 'https://github.com/hpcugent/hanythingondemand' description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. @@ -24,7 +24,7 @@ dependencies = [ (python, pythonver), ('pbs_python', '4.6.0', versionsuffix), ('vsc-mympirun', '3.4.2', '', True), - ('vsc-base', '2.0.4', '', True), + ('vsc-base', '2.1.2', '', True), ('netifaces', '0.10.4', versionsuffix), ('netaddr', '0.7.14', versionsuffix), ] diff --git a/easybuild/easyconfigs/v/vsc-base/vsc-base-2.1.2.eb b/easybuild/easyconfigs/v/vsc-base/vsc-base-2.1.2.eb new file mode 100644 index 0000000000..b0db50051e --- /dev/null +++ b/easybuild/easyconfigs/v/vsc-base/vsc-base-2.1.2.eb @@ -0,0 +1,17 @@ +easyblock = 'VersionIndependentPythonPackage' + +name = 'vsc-base' +version = '2.1.2' + +homepage = 'http://hpcugent.github.com/vsc-mympirun/' +description = """VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent.""" + +# we build this to work with every python version +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = [SOURCE_TAR_GZ] +source_urls = [PYPI_SOURCE] + +options = {'modulename': 'vsc.utils'} + +moduleclass = 'tools' -- GitLab From f2af4369e6b2f2d212d1ac736d6e943b338b608f Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Thu, 2 Apr 2015 14:48:24 +0200 Subject: [PATCH 0913/1217] Bump vsc-base version. --- easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2.eb b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2.eb index f1a22d74a6..e24521bcf5 100755 --- a/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2.eb +++ b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2.eb @@ -13,7 +13,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['https://github.com/hpcugent/vsc-mympirun/archive/'] dependencies = [ - ('vsc-base', '2.0.4'), + ('vsc-base', '2.1.2'), ('setuptools', '1.4.2'), ] -- GitLab From a297788484eb778faeef5c9f335a58cc3b33c9b4 Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Thu, 2 Apr 2015 12:45:56 -0400 Subject: [PATCH 0914/1217] adding fpm to the dummy Ruby install --- .../Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb | 38 ------------------- .../r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0.eb | 38 ------------------- easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb | 19 ++++++++++ 3 files changed, 19 insertions(+), 76 deletions(-) delete mode 100644 easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb delete mode 100644 easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0.eb diff --git a/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb b/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb deleted file mode 100644 index 1aa58a2ac6..0000000000 --- a/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0-foss-2015a.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'Bundle' - -name = 'Ruby-FPM' -rubyver = '2.1.5' -version = '%s-1.0.0' % rubyver - -homepage = 'https://www.ruby-lang.org' -description = """Ruby is a dynamic, open source programming language with - a focus on simplicity and productivity. It has an elegant syntax that is - natural to read and easy to write.""" - -toolchain = {'name': 'foss', 'version': '2015a'} - -# these are extensions for Ruby -exts_defaultclass = 'RubyGem' -exts_filter = ("gem list %(ext_name)s -i", "") - -dependencies = [ - ('Ruby', rubyver), -] - -name_tmpl = '%(name)s-%(version)s.gem' -ext_options = { - 'source_urls': [ - 'http://rubygems.org/downloads/', # gem archive - ], - 'source_tmpl': name_tmpl, -} -exts_list = [ - ('ffi', '1.9.6', ext_options), - ('childprocess', '0.5.5', ext_options), - ('json', '1.8.2', ext_options), - ('cabin', '0.7.1', ext_options), - ('backports', '3.6.4', ext_options), - ('arr-pm', '0.0.9', ext_options), - ('clamp', '0.6.4', ext_options), - ('fpm', '1.3.3', ext_options), -] diff --git a/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0.eb b/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0.eb deleted file mode 100644 index 065470ac86..0000000000 --- a/easybuild/easyconfigs/r/Ruby-FPM/Ruby-FPM-2.1.5-1.0.0.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = 'Bundle' - -name = 'Ruby-FPM' -rubyver = '2.1.5' -version = '%s-1.0.0' % rubyver - -homepage = 'https://www.ruby-lang.org' -description = """Ruby is a dynamic, open source programming language with - a focus on simplicity and productivity. It has an elegant syntax that is - natural to read and easy to write.""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -# these are extensions for Ruby -exts_defaultclass = 'RubyGem' -exts_filter = ("gem list %(ext_name)s -i", "") - -dependencies = [ - ('Ruby', rubyver), -] - -name_tmpl = '%(name)s-%(version)s.gem' -ext_options = { - 'source_urls': [ - 'http://rubygems.org/downloads/', # gem archive - ], - 'source_tmpl': name_tmpl, -} -exts_list = [ - ('ffi', '1.9.6', ext_options), - ('childprocess', '0.5.5', ext_options), - ('json', '1.8.2', ext_options), - ('cabin', '0.7.1', ext_options), - ('backports', '3.6.4', ext_options), - ('arr-pm', '0.0.9', ext_options), - ('clamp', '0.6.4', ext_options), - ('fpm', '1.3.3', ext_options), -] diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb index cce8d3ff7e..ec8aac5c94 100644 --- a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb @@ -31,3 +31,22 @@ configopts = "--disable-install-doc --enable-shared" moduleclass = 'lang' +name_tmpl = '%(name)s-%(version)s.gem' + +ext_options = { + 'source_urls': [ + 'http://rubygems.org/downloads/', # gem archive + ], + 'source_tmpl': name_tmpl, +} + +exts_list = [ + ('ffi', '1.9.6', ext_options), + ('childprocess', '0.5.5', ext_options), + ('json', '1.8.2', ext_options), + ('cabin', '0.7.1', ext_options), + ('backports', '3.6.4', ext_options), + ('arr-pm', '0.0.9', ext_options), + ('clamp', '0.6.4', ext_options), + ('fpm', '1.3.3', ext_options), +] -- GitLab From e77b57269e1d454e80a383ec30c5c6d1c2eea0c4 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Fri, 3 Apr 2015 16:15:04 +0200 Subject: [PATCH 0915/1217] added some pandas --- .../p/pandas/pandas-0.16.0-intel-2015a.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/p/pandas/pandas-0.16.0-intel-2015a.eb diff --git a/easybuild/easyconfigs/p/pandas/pandas-0.16.0-intel-2015a.eb b/easybuild/easyconfigs/p/pandas/pandas-0.16.0-intel-2015a.eb new file mode 100644 index 0000000000..d8f4627e56 --- /dev/null +++ b/easybuild/easyconfigs/p/pandas/pandas-0.16.0-intel-2015a.eb @@ -0,0 +1,31 @@ +easyblock = "PythonPackage" + +name = "pandas" +version = "0.16.0" + +homepage = "http://pypi.python.org/pypi/pandas/" +description = """pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures + and data analysis tools for the Python programming language.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = "Python" +pythonversion = "2.7.9" + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [(python, pythonversion)] + +py_short_ver = ".".join(pythonversion.split(".")[0:2]) +pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) + +sanity_check_paths = { + 'files': [("%s-%%(version)s-py%s.egg" % (pylibdir, py_short_ver), + "%s-%%(version)s-py%s-linux-x86_64.egg" % (pylibdir, py_short_ver))], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 42777cfcc27e91ed8e4803d24b4cdf89bd354dbc Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Fri, 3 Apr 2015 16:35:24 +0200 Subject: [PATCH 0916/1217] fixed filename --- ...0-intel-2015a.eb => pandas-0.16.0-intel-2015a-Python-2.7.9.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/p/pandas/{pandas-0.16.0-intel-2015a.eb => pandas-0.16.0-intel-2015a-Python-2.7.9.eb} (100%) diff --git a/easybuild/easyconfigs/p/pandas/pandas-0.16.0-intel-2015a.eb b/easybuild/easyconfigs/p/pandas/pandas-0.16.0-intel-2015a-Python-2.7.9.eb similarity index 100% rename from easybuild/easyconfigs/p/pandas/pandas-0.16.0-intel-2015a.eb rename to easybuild/easyconfigs/p/pandas/pandas-0.16.0-intel-2015a-Python-2.7.9.eb -- GitLab From 476505091f8f333a882e611d068bebc32b5cb9f8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 5 Apr 2015 13:35:02 +0200 Subject: [PATCH 0917/1217] replace use of $root with %(installdir)s --- easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb index 355b27d3e6..9dcb92d748 100644 --- a/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb @@ -53,7 +53,7 @@ sanity_check_paths = { } modextravars = { - 'BIOINFOCONFDIR': '$root/bios/conf', + 'BIOINFOCONFDIR': '%(installdir)s/bios/conf', } moduleclass = 'bio' -- GitLab From 1eb6cd64d29cd9510a131f39baf2c164268ed0a8 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 7 Apr 2015 14:01:49 +0200 Subject: [PATCH 0918/1217] added new PyYAML with intel 2015a --- .../PyYAML-3.11-intel-2015a-Python-2.7.9.eb | 32 +++++++++++++++++++ 1 file changed, 32 insertions(+) create mode 100644 easybuild/easyconfigs/p/PyYAML/PyYAML-3.11-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.11-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.11-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..adc1d69d57 --- /dev/null +++ b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.11-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,32 @@ +easyblock = "PythonPackage" + +name = "PyYAML" +version = "3.11" + +homepage = "http://pypi.python.org/pypi/PyYAML/" +description = """PyYAML is a YAML parser and emitter for the Python programming language.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = "Python" +pythonversion = "2.7.9" +py_short_ver = ".".join(pythonversion.split(".")[0:2]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('libyaml', '0.1.4'), +] + +options = {'modulename': 'yaml'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/yaml' % py_short_ver], +} + +moduleclass = 'lib' -- GitLab From 5a8f25c7dd5bc201dc7fa5e008db23b13439afac Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 7 Apr 2015 14:11:14 +0200 Subject: [PATCH 0919/1217] added forgotten libyaml --- .../l/libyaml/libyaml-0.1.4-intel-2015a.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-intel-2015a.eb diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-intel-2015a.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-intel-2015a.eb new file mode 100644 index 0000000000..6cc4254bea --- /dev/null +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-intel-2015a.eb @@ -0,0 +1,28 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Nils Christian +# License:: MIT/GPL +# $Id$ +## + +easyblock = 'ConfigureMake' + +name = 'libyaml' +version = '0.1.4' + +homepage = 'http://pyyaml.org/wiki/LibYAML' +description = """LibYAML is a YAML 1.1 parser and emitter written in C.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = ['yaml-%(version)s.tar.gz'] +source_urls = ['http://pyyaml.org/download/libyaml/'] + +sanity_check_paths = { + 'files': ["include/yaml.h", "lib/libyaml.a", "lib/libyaml.so"], + 'dirs': ["lib/pkgconfig"] +} + +moduleclass = 'lib' -- GitLab From 4cd2ead1b1b4b9c9a19f6400cb7c9f6061835c53 Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Fri, 3 Apr 2015 12:57:44 +0200 Subject: [PATCH 0920/1217] Support IPython 3.0. --- .../IPython-3.0.0-intel-2015a-Python-2.7.9.eb | 40 +++++++++++++++++++ .../o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb | 27 +++++++++++++ ...Q-2.2.0.1-intel-2015a-Python-2.7.9-zmq3.eb | 31 ++++++++++++++ .../util-linux-2.22.2-intel-2015a.eb | 29 ++++++++++++++ 4 files changed, 127 insertions(+) create mode 100644 easybuild/easyconfigs/i/IPython/IPython-3.0.0-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb create mode 100644 easybuild/easyconfigs/p/PyZMQ/PyZMQ-2.2.0.1-intel-2015a-Python-2.7.9-zmq3.eb create mode 100644 easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2015a.eb diff --git a/easybuild/easyconfigs/i/IPython/IPython-3.0.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/i/IPython/IPython-3.0.0-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..941a1d3d1c --- /dev/null +++ b/easybuild/easyconfigs/i/IPython/IPython-3.0.0-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,40 @@ +easyblock = "PythonPackage" + +name = 'IPython' +version = '3.0.0' + +homepage = 'http://ipython.org/index.html' +description = """IPython provides a rich architecture for interactive computing with: + Powerful interactive shells (terminal and Qt-based). + A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. + Support for interactive data visualization and use of GUI toolkits. + Flexible, embeddable interpreters to load into your own projects. + Easy to use, high performance tools for parallel computing.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://archive.ipython.org/release/%(version)s/'] + +python = 'Python' +pyver = '2.7.9' +pyshortver = '2.7' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), + ('pysqlite', '2.6.3', versionsuffix), + ('pyzmq', '2.0.1', versionsuffix, '-zmq3'), +] + +# override extensions sanity check, default filter that imports a Python module doesn't work here +exts_filter = ('ipython -h', "") + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/IPython' % pyshortver], +} + +sanity_check_commands = [('iptest','')] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb new file mode 100644 index 0000000000..9ac5fd9480 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'OpenPGM' +version = '5.2.122' + +homepage = 'http://code.google.com/p/openpgm/' +description = """OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) + specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol + that enables receivers to detect loss, request retransmission of lost data, or notify an application + of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible + for ensuring all data is received, absolving the sender of reception responsibility.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://%s.googlecode.com/files/' % (name.lower())] +sources = ['%s-%s.tar.gz' % ('libpgm', version)] + +configopts = '--with-pic' + +start_dir = 'pgm' + +sanity_check_paths = { + 'files': ['lib/libpgm.so', 'lib/libpgm.a'], + 'dirs': ['include'], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-2.2.0.1-intel-2015a-Python-2.7.9-zmq3.eb b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-2.2.0.1-intel-2015a-Python-2.7.9-zmq3.eb new file mode 100644 index 0000000000..022cf3fe3b --- /dev/null +++ b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-2.2.0.1-intel-2015a-Python-2.7.9-zmq3.eb @@ -0,0 +1,31 @@ +name = 'PyZMQ' +version = '2.2.0.1' + +homepage = 'http://www.zeromq.org/bindings:python' +description = """Python bindings for ZeroMQ""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pythonversion = '2.7.9' +pythonshortversion = ".".join(pythonversion.split(".")[0:2]) +zmqversion = '3.2.2' + +versionsuffix = '-%s-%s-%s' % (python, pythonversion, 'zmq%s' % zmqversion.split('.')[0]) + +dependencies = [ + (python, pythonversion), + ('ZeroMQ', zmqversion), +] + +options = {'modulename': 'zmq'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/zmq' % pythonshortversion], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2015a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2015a.eb new file mode 100644 index 0000000000..7cdce40ba2 --- /dev/null +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2015a.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'util-linux' +version = '2.22.2' + +homepage = 'http://www.kernel.org/pub/linux/utils/util-linux' +description = """Set of Linux utilities""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['%s/v%s'%(homepage,'.'.join(version.split('.')[0:2]) )] +sources = [SOURCELOWER_TAR_GZ] + +# disable account related utilities (they need OS dependant pam-devel files) +# disable wall and friends (requires group changing permissions for install user) +# install systemd service files in install dir +configopts = '--disable-chfn-chsh --disable-login --disable-su ' +configopts += '--disable-wall --disable-use-tty-group ' +configopts += '--disable-makeinstall-chown --disable-makeinstall-setuid ' +configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ['lib/lib%s.a' % x for x in ['blkid' , 'mount', 'uuid']], + 'dirs': ['include', 'bin', 'share', 'sbin'], +} + +moduleclass = 'tools' -- GitLab From 5a631ddc9892e26f84e2e8cc753e71b1c9cedc1c Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Tue, 7 Apr 2015 14:47:53 +0200 Subject: [PATCH 0921/1217] WIP support for IPython. --- .../IPython-3.0.0-intel-2015a-Python-2.7.9.eb | 3 +- ...MQ-14.5.0-intel-2015a-Python-2.7.9-zmq3.eb | 34 ++++++++++++++++++ ...requests-2.6.0-intel-2015a-Python-2.7.9.eb | 30 ++++++++++++++++ .../z/ZeroMQ/ZeroMQ-3.2.2-intel-2015a.eb | 36 +++++++++++++++++++ 4 files changed, 102 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/p/PyZMQ/PyZMQ-14.5.0-intel-2015a-Python-2.7.9-zmq3.eb create mode 100644 easybuild/easyconfigs/r/requests/requests-2.6.0-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-intel-2015a.eb diff --git a/easybuild/easyconfigs/i/IPython/IPython-3.0.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/i/IPython/IPython-3.0.0-intel-2015a-Python-2.7.9.eb index 941a1d3d1c..bda10584b8 100644 --- a/easybuild/easyconfigs/i/IPython/IPython-3.0.0-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/i/IPython/IPython-3.0.0-intel-2015a-Python-2.7.9.eb @@ -24,7 +24,8 @@ versionsuffix = '-%s-%s' % (python, pyver) dependencies = [ (python, pyver), ('pysqlite', '2.6.3', versionsuffix), - ('pyzmq', '2.0.1', versionsuffix, '-zmq3'), + ('PyZMQ', '14.5.0', '%s-zmq3' % versionsuffix), + ('requests', '2.6.0', versionsuffix) ] # override extensions sanity check, default filter that imports a Python module doesn't work here diff --git a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-14.5.0-intel-2015a-Python-2.7.9-zmq3.eb b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-14.5.0-intel-2015a-Python-2.7.9-zmq3.eb new file mode 100644 index 0000000000..b297340fc3 --- /dev/null +++ b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-14.5.0-intel-2015a-Python-2.7.9-zmq3.eb @@ -0,0 +1,34 @@ +easyblock = 'PythonPackage' + +name = 'PyZMQ' +version = '14.5.0' + +homepage = 'http://www.zeromq.org/bindings:python' +description = """Python bindings for ZeroMQ""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pythonversion = '2.7.9' +pythonshortversion = ".".join(pythonversion.split(".")[0:2]) +zmqversion = '3.2.2' + +versionsuffix = '-%s-%s-%s' % (python, pythonversion, 'zmq%s' % zmqversion.split('.')[0]) + +dependencies = [ + (python, pythonversion), + ('ZeroMQ', zmqversion), +] + +options = {'modulename': 'zmq'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/zmq' % pythonshortversion], +} + +moduleclass = 'devel' + diff --git a/easybuild/easyconfigs/r/requests/requests-2.6.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/r/requests/requests-2.6.0-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..4a577a2051 --- /dev/null +++ b/easybuild/easyconfigs/r/requests/requests-2.6.0-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,30 @@ +easyblock = 'PythonPackage' + +name = 'requests' +version = '2.6.0' + +homepage = 'https://pypi.python.org/pypi/requests/2.6.0' +description = """Python http for humans""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pythonversion = '2.7.9' +pythonshortversion = ".".join(pythonversion.split(".")[0:2]) + +versionsuffix = '-%s-%s' % (python, pythonversion) + +dependencies = [ + (python, pythonversion), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/requests-%s-py%s.egg' % (pythonshortversion, version, pythonshortversion) ], +} + +moduleclass = 'devel' + diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-intel-2015a.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-intel-2015a.eb new file mode 100644 index 0000000000..537584a82a --- /dev/null +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-intel-2015a.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'ZeroMQ' +version = '3.2.2' + +homepage = 'http://www.zeromq.org/' +description = """ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. + It gives you sockets that carry atomic messages across various transports like in-process, + inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, + pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered + products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous + message-processing tasks. It has a score of language APIs and runs on most operating systems.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://download.zeromq.org/'] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['ZeroMQ-%(version)s_icc.patch'] + +# --with-pgm will use shipped OpenPGM (in foreign subdir) +configopts = '--with-pic --with-system-pgm ' +configopts += 'OpenPGM_CFLAGS="-I$EBROOTOPENPGM/include/pgm-${EBVERSIONOPENPGM%.*}" ' +configopts += 'OpenPGM_LIBS="-L$EBROOTOPENPGM/lib -lpgm -lrt -lpthread -lm" ' + +dependencies = [ + ('OpenPGM', '5.2.122'), + ('util-linux', '2.22.2'), +] + +sanity_check_paths = { + 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'dirs': ['include', 'lib'], +} + +moduleclass = 'devel' -- GitLab From 1ef7de76cd6442722940f1c74fd8d37f35d7a9c9 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 7 Apr 2015 15:54:48 +0200 Subject: [PATCH 0922/1217] Update libyaml-0.1.4-intel-2015a.eb --- easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-intel-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-intel-2015a.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-intel-2015a.eb index 6cc4254bea..7b42e2d083 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-intel-2015a.eb @@ -10,7 +10,7 @@ easyblock = 'ConfigureMake' name = 'libyaml' -version = '0.1.4' +version = '0.1.6' homepage = 'http://pyyaml.org/wiki/LibYAML' description = """LibYAML is a YAML 1.1 parser and emitter written in C.""" -- GitLab From 42afd7c6dd49bc848146fa0d6e60fd659bfb2ae2 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 7 Apr 2015 15:54:57 +0200 Subject: [PATCH 0923/1217] Rename libyaml-0.1.4-intel-2015a.eb to libyaml-0.1.6-intel-2015a.eb --- ...{libyaml-0.1.4-intel-2015a.eb => libyaml-0.1.6-intel-2015a.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/l/libyaml/{libyaml-0.1.4-intel-2015a.eb => libyaml-0.1.6-intel-2015a.eb} (100%) diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-intel-2015a.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015a.eb similarity index 100% rename from easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-intel-2015a.eb rename to easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015a.eb -- GitLab From 1c9bf47a32741683d5c671afd202554f7a7ee7a4 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 7 Apr 2015 15:55:07 +0200 Subject: [PATCH 0924/1217] Update PyYAML-3.11-intel-2015a-Python-2.7.9.eb --- .../p/PyYAML/PyYAML-3.11-intel-2015a-Python-2.7.9.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.11-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.11-intel-2015a-Python-2.7.9.eb index adc1d69d57..bd74a7c6d1 100644 --- a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.11-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.11-intel-2015a-Python-2.7.9.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ (python, pythonversion), - ('libyaml', '0.1.4'), + ('libyaml', '0.1.6'), ] options = {'modulename': 'yaml'} -- GitLab From b6a99c2a39116ce3fc6fd07e3b51415b85e0f0fe Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 7 Apr 2015 17:31:32 +0200 Subject: [PATCH 0925/1217] stop relying on $MKLROOT in ROOT easyconfigs --- easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-intel-2015a.eb | 2 +- easybuild/easyconfigs/r/ROOT/ROOT-v5.34.18-ictce-5.5.0.eb | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-ictce-4.0.6.eb b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-ictce-4.0.6.eb index fb2d479661..55aab9105b 100644 --- a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-ictce-4.0.6.eb @@ -32,7 +32,7 @@ configopts = ' --disable-xft --disable-x11 --disable-xrootd --disable-mysql' # enable features configopts += ' --enable-unuran --enable-table --enable-explicitlink --enable-minuit2 --enable-roofit' configopts += ' --with-gsl-incdir=$EBROOTGSL/include/gsl --with-gsl-libdir=$EBROOTGSL/lib' -configopts += ' --with-fftw3-incdir=$MKLROOT/mkl/include/fftw --with-fftw3-libdir=$MKLROOT/mkl/lib/intel64' +configopts += ' --with-fftw3-incdir=$EBROOTIMKL/mkl/include/fftw --with-fftw3-libdir=$EBROOTIMKL/mkl/lib/intel64' configopts += ' --with-xml-incdir=$EBROOTLIBXML2/include/libxml2/libxml --with-xml-libdir=$EBROOTLIBXML2/lib' configopts += ' --with-python-libdir=$EBROOTPYTHON/lib' diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-intel-2015a.eb b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-intel-2015a.eb index 6fd56a833c..c0e1e4e91e 100644 --- a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-intel-2015a.eb +++ b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-intel-2015a.eb @@ -32,7 +32,7 @@ configopts = ' --disable-xft --disable-x11 --disable-xrootd --disable-mysql' # enable features configopts += ' --enable-unuran --enable-table --enable-explicitlink --enable-minuit2 --enable-roofit' configopts += ' --with-gsl-incdir=$EBROOTGSL/include/gsl --with-gsl-libdir=$EBROOTGSL/lib' -configopts += ' --with-fftw3-incdir=$MKLROOT/mkl/include/fftw --with-fftw3-libdir=$MKLROOT/mkl/lib/intel64' +configopts += ' --with-fftw3-incdir=$EBROOTIMKL/mkl/include/fftw --with-fftw3-libdir=$EBROOTIMKL/mkl/lib/intel64' configopts += ' --with-xml-incdir=$EBROOTLIBXML2/include/libxml2/libxml --with-xml-libdir=$EBROOTLIBXML2/lib' configopts += ' --with-python-libdir=$EBROOTPYTHON/lib' diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.18-ictce-5.5.0.eb b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.18-ictce-5.5.0.eb index 74c34689f1..cc50539ec7 100644 --- a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.18-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.18-ictce-5.5.0.eb @@ -36,7 +36,7 @@ configopts = ' --disable-xft --disable-xrootd --disable-mysql' # enable features configopts += ' --enable-unuran --enable-table --enable-explicitlink --enable-minuit2 --enable-roofit' configopts += ' --with-gsl-incdir=$EBROOTGSL/include/gsl --with-gsl-libdir=$EBROOTGSL/lib' -configopts += ' --with-fftw3-incdir=$MKLROOT/mkl/include/fftw --with-fftw3-libdir=$MKLROOT/mkl/lib/intel64' +configopts += ' --with-fftw3-incdir=$EBROOTIMKL/mkl/include/fftw --with-fftw3-libdir=$EBROOTIMKL/mkl/lib/intel64' configopts += ' --with-xml-incdir=$EBROOTLIBXML2/include/libxml2/libxml --with-xml-libdir=$EBROOTLIBXML2/lib' configopts += ' --with-python-libdir=$EBROOTPYTHON/lib' -- GitLab From 4f90d7aafa04678d9f6316d3eced8ea82c0fd1ae Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 7 Apr 2015 17:36:49 +0200 Subject: [PATCH 0926/1217] fix indent --- easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb index 9dcb92d748..418cc4118e 100644 --- a/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb @@ -53,7 +53,7 @@ sanity_check_paths = { } modextravars = { - 'BIOINFOCONFDIR': '%(installdir)s/bios/conf', + 'BIOINFOCONFDIR': '%(installdir)s/bios/conf', } moduleclass = 'bio' -- GitLab From 719a4f865622e804799f81f249797da18ab007e2 Mon Sep 17 00:00:00 2001 From: Petar Forai Date: Tue, 7 Apr 2015 22:49:27 +0200 Subject: [PATCH 0927/1217] Added Cray Toolchain Configs. --- .../easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb | 18 ++++++++++++++++++ .../easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb | 18 ++++++++++++++++++ .../easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb | 18 ++++++++++++++++++ .../easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb | 18 ++++++++++++++++++ .../c/CrayIntel/CrayIntel-5.1.29.eb | 18 ++++++++++++++++++ .../c/CrayIntel/CrayIntel-5.2.25.eb | 18 ++++++++++++++++++ 6 files changed, 108 insertions(+) create mode 100644 easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb create mode 100644 easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb create mode 100644 easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb create mode 100644 easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb create mode 100644 easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb diff --git a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb new file mode 100644 index 0000000000..940aef1f65 --- /dev/null +++ b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb @@ -0,0 +1,18 @@ +easyblock = 'Toolchain' + +name = 'CrayCCE' +version = '5.1.29' + +homepage = 'http://hpcugent.github.io/easybuild/' +description = """This is a shim module for having EB pick up the Cray +Programming Environment (PrgEnv-*) modules. This module implements the EB +toolchain module for each of the cray modules.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [] +sources = [] +dependencies = [] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb new file mode 100644 index 0000000000..286a0ba710 --- /dev/null +++ b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb @@ -0,0 +1,18 @@ +easyblock = 'Toolchain' + +name = 'CrayCCE' +version = '5.2.25' + +homepage = 'http://hpcugent.github.io/easybuild/' +description = """This is a shim module for having EB pick up the Cray +Programming Environment (PrgEnv-*) modules. This module implements the EB +toolchain module for each of the cray modules.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [] +sources = [] +dependencies = [] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..2494f6ad7d --- /dev/null +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb @@ -0,0 +1,18 @@ +easyblock = 'Toolchain' + +name = 'CrayGNU' +version = '5.1.29' + +homepage = 'http://hpcugent.github.io/easybuild/' +description = """This is a shim module for having EB pick up the Cray +Programming Environment (PrgEnv-*) modules. This module implements the EB +toolchain module for each of the cray modules.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [] +sources = [] +dependencies = [] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..8f621e3fe9 --- /dev/null +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb @@ -0,0 +1,18 @@ +easyblock = 'Toolchain' + +name = 'CrayGNU' +version = '5.2.25' + +homepage = 'http://hpcugent.github.io/easybuild/' +description = """This is a shim module for having EB pick up the Cray +Programming Environment (PrgEnv-*) modules. This module implements the EB +toolchain module for each of the cray modules.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [] +sources = [] +dependencies = [] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb new file mode 100644 index 0000000000..be8eff9d45 --- /dev/null +++ b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb @@ -0,0 +1,18 @@ +easyblock = 'Toolchain' + +name = 'CrayIntel' +version = '5.1.29' + +homepage = 'http://hpcugent.github.io/easybuild/' +description = """This is a shim module for having EB pick up the Cray +Programming Environment (PrgEnv-*) modules. This module implements the EB +toolchain module for each of the cray modules.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [] +sources = [] +dependencies = [] + +moduleclass = 'toolchain' + diff --git a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb new file mode 100644 index 0000000000..ed28f41efb --- /dev/null +++ b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb @@ -0,0 +1,18 @@ +easyblock = 'Toolchain' + +name = 'CrayIntel' +version = '5.2.25' + +homepage = 'http://hpcugent.github.io/easybuild/' +description = """This is a shim module for having EB pick up the Cray +Programming Environment (PrgEnv-*) modules. This module implements the EB +toolchain module for each of the cray modules.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [] +sources = [] +dependencies = [] + +moduleclass = 'toolchain' + -- GitLab From 6b0e3808d926bb872e1b03863cc163185fa48978 Mon Sep 17 00:00:00 2001 From: Petar Forai Date: Tue, 7 Apr 2015 23:29:53 +0200 Subject: [PATCH 0928/1217] Addressed remarks. --- easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb | 11 ++--------- easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb | 11 ++--------- easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb | 11 ++--------- easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb | 11 ++--------- easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb | 11 ++--------- easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb | 11 ++--------- 6 files changed, 12 insertions(+), 54 deletions(-) diff --git a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb index 940aef1f65..f09961bd60 100644 --- a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb +++ b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb @@ -3,16 +3,9 @@ easyblock = 'Toolchain' name = 'CrayCCE' version = '5.1.29' -homepage = 'http://hpcugent.github.io/easybuild/' -description = """This is a shim module for having EB pick up the Cray -Programming Environment (PrgEnv-*) modules. This module implements the EB -toolchain module for each of the cray modules.""" +homepage = '(none)' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-cray module.""" toolchain = {'name': 'dummy', 'version': 'dummy'} -source_urls = [] -sources = [] -dependencies = [] - moduleclass = 'toolchain' - diff --git a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb index 286a0ba710..ff0774c751 100644 --- a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb +++ b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb @@ -3,16 +3,9 @@ easyblock = 'Toolchain' name = 'CrayCCE' version = '5.2.25' -homepage = 'http://hpcugent.github.io/easybuild/' -description = """This is a shim module for having EB pick up the Cray -Programming Environment (PrgEnv-*) modules. This module implements the EB -toolchain module for each of the cray modules.""" +homepage = '(none)' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-cray module.""" toolchain = {'name': 'dummy', 'version': 'dummy'} -source_urls = [] -sources = [] -dependencies = [] - moduleclass = 'toolchain' - diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb index 2494f6ad7d..d2d1520bce 100644 --- a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb @@ -3,16 +3,9 @@ easyblock = 'Toolchain' name = 'CrayGNU' version = '5.1.29' -homepage = 'http://hpcugent.github.io/easybuild/' -description = """This is a shim module for having EB pick up the Cray -Programming Environment (PrgEnv-*) modules. This module implements the EB -toolchain module for each of the cray modules.""" +homepage = '(none)' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-gnu module.""" toolchain = {'name': 'dummy', 'version': 'dummy'} -source_urls = [] -sources = [] -dependencies = [] - moduleclass = 'toolchain' - diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb index 8f621e3fe9..afc8c6010c 100644 --- a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb @@ -3,16 +3,9 @@ easyblock = 'Toolchain' name = 'CrayGNU' version = '5.2.25' -homepage = 'http://hpcugent.github.io/easybuild/' -description = """This is a shim module for having EB pick up the Cray -Programming Environment (PrgEnv-*) modules. This module implements the EB -toolchain module for each of the cray modules.""" +homepage = '(none)' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-gnu module.""" toolchain = {'name': 'dummy', 'version': 'dummy'} -source_urls = [] -sources = [] -dependencies = [] - moduleclass = 'toolchain' - diff --git a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb index be8eff9d45..6cb4679750 100644 --- a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb +++ b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb @@ -3,16 +3,9 @@ easyblock = 'Toolchain' name = 'CrayIntel' version = '5.1.29' -homepage = 'http://hpcugent.github.io/easybuild/' -description = """This is a shim module for having EB pick up the Cray -Programming Environment (PrgEnv-*) modules. This module implements the EB -toolchain module for each of the cray modules.""" +homepage = '(none)' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-intel module.""" toolchain = {'name': 'dummy', 'version': 'dummy'} -source_urls = [] -sources = [] -dependencies = [] - moduleclass = 'toolchain' - diff --git a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb index ed28f41efb..f24f574b3f 100644 --- a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb +++ b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb @@ -3,16 +3,9 @@ easyblock = 'Toolchain' name = 'CrayIntel' version = '5.2.25' -homepage = 'http://hpcugent.github.io/easybuild/' -description = """This is a shim module for having EB pick up the Cray -Programming Environment (PrgEnv-*) modules. This module implements the EB -toolchain module for each of the cray modules.""" +homepage = '(none)' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-intel module.""" toolchain = {'name': 'dummy', 'version': 'dummy'} -source_urls = [] -sources = [] -dependencies = [] - moduleclass = 'toolchain' - -- GitLab From 0f709b5dccc6325285acd9624c88254d8b01ae92 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 8 Apr 2015 12:09:21 +0200 Subject: [PATCH 0929/1217] add easyconfig (and patch) for pyhull + Qhull with intel/2015a, set $CPATH correctly in existing Qhull easyconfigs --- .../c/CMake/CMake-3.2.1-GCC-4.9.2.eb | 22 ++++++++++++ .../pyhull-1.5.4-intel-2015a-Python-2.7.9.eb | 34 +++++++++++++++++++ .../pyhull-1.5.4_use-provided-Qhull.patch | 26 ++++++++++++++ .../q/Qhull/Qhull-2012.1-ictce-7.1.2.eb | 4 +++ .../q/Qhull/Qhull-2012.1-intel-2014b.eb | 4 +++ .../q/Qhull/Qhull-2012.1-intel-2015a.eb | 31 +++++++++++++++++ 6 files changed, 121 insertions(+) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.2.1-GCC-4.9.2.eb create mode 100644 easybuild/easyconfigs/p/pyhull/pyhull-1.5.4-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/p/pyhull/pyhull-1.5.4_use-provided-Qhull.patch create mode 100644 easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2015a.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.2.1-GCC-4.9.2.eb b/easybuild/easyconfigs/c/CMake/CMake-3.2.1-GCC-4.9.2.eb new file mode 100644 index 0000000000..f556c35a24 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.2.1-GCC-4.9.2.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.2.1' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pyhull/pyhull-1.5.4-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/pyhull/pyhull-1.5.4-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..c71d39213e --- /dev/null +++ b/easybuild/easyconfigs/p/pyhull/pyhull-1.5.4-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,34 @@ +easyblock = "PythonPackage" + +name = "pyhull" +version = "1.5.4" +homepage = "http://pythonhosted.org/pyhull/" +description = """Pyhull is a Python wrapper to qhull (http://www.qhull.org/) for the computation of the convex hull, + Delaunay triangulation and Voronoi diagram. It is written as a Python C extension, with both high-level and low-level + interfaces to qhull. +""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +patches = ['pyhull-%(version)s_use-provided-Qhull.patch'] + +python = "Python" +pythonversion = "2.7.9" +py_short_ver = ".".join(pythonversion.split(".")[0:2]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('Qhull', '2012.1'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pv)s/site-packages/pyhull-%%(version)s-py%(pv)s-linux-x86_64.egg' % {'pv': py_short_ver}], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/pyhull/pyhull-1.5.4_use-provided-Qhull.patch b/easybuild/easyconfigs/p/pyhull/pyhull-1.5.4_use-provided-Qhull.patch new file mode 100644 index 0000000000..718405a70d --- /dev/null +++ b/easybuild/easyconfigs/p/pyhull/pyhull-1.5.4_use-provided-Qhull.patch @@ -0,0 +1,26 @@ +let pyhull use provided Qhull rather than having it (re)build (parts of) Qhull itself +author: Kenneth Hoste (HPC-UGent) +--- pyhull-1.5.4/setup.py.orig 2015-04-07 21:30:35.000000000 +0200 ++++ pyhull-1.5.4/setup.py 2015-04-08 11:24:48.913427316 +0200 +@@ -7,14 +7,18 @@ + from setuptools import setup, Extension, find_packages + + src_dir = "src" +-include_dirs = glob.glob(os.path.join("src", "libqhull")) +-sources = glob.glob(os.path.join("src", "libqhull", "*.c")) ++include_dirs = [os.path.join(os.getenv('EBROOTQHULL'), 'include', 'libqhull')] ++library_dirs = [os.path.join(os.getenv('EBROOTQHULL'), 'lib')] ++sources = [] + if sys.platform.strip() == "darwin": + include_dirs += glob.glob(os.path.join("src", "fmemopen")) + sources += glob.glob(os.path.join("src", "fmemopen", "*.c")) + extension = Extension('pyhull._pyhull', + include_dirs=include_dirs, +- sources=[os.path.join(src_dir, '_pyhull.c')] + sources) ++ library_dirs=library_dirs, ++ libraries=['qhull'], ++ sources=[os.path.join(src_dir, '_pyhull.c')] + sources, ++ ) + + long_description = """ + Pyhull is a Python wrapper to Qhull (http://www.qhull.org/) for the diff --git a/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-ictce-7.1.2.eb b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-ictce-7.1.2.eb index 9aa673f99d..dd5a337d1f 100644 --- a/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-ictce-7.1.2.eb @@ -24,4 +24,8 @@ sanity_check_paths = { 'dirs': [], } +modextrapaths = { + 'CPATH': ['qhull/include'], +} + moduleclass = 'math' diff --git a/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2014b.eb b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2014b.eb index 35f7fe3a72..188d2a929c 100644 --- a/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2014b.eb +++ b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2014b.eb @@ -24,4 +24,8 @@ sanity_check_paths = { 'dirs': [], } +modextrapaths = { + 'CPATH': ['qhull/include'], +} + moduleclass = 'math' diff --git a/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2015a.eb b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2015a.eb new file mode 100644 index 0000000000..d32af2c654 --- /dev/null +++ b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2015a.eb @@ -0,0 +1,31 @@ +easyblock = 'CMakeMake' + +name = 'Qhull' +version = '2012.1' + +homepage = 'http://www.qhull.org' +description = """ +Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, +furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, +and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull. +""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = ['%(namelower)s-%(version)s-src.tgz'] +source_urls = ['http://www.qhull.org/download/'] + +patches = ['Qhull-2012.1-intel-fix.patch'] + +builddependencies = [('CMake', '3.2.1', '', ('GCC', '4.9.2'))] + +sanity_check_paths = { + 'files': ['bin/qhull', 'lib/libqhull.so'], + 'dirs': [], +} + +modextrapaths = { + 'CPATH': ['qhull/include'], +} + +moduleclass = 'math' -- GitLab From 7e51eec446f832f110baadcf32a1d2d1125102d9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 8 Apr 2015 13:14:47 +0200 Subject: [PATCH 0930/1217] SWIG is build dependency for python-meep, style fixes in Meep easyconfigs --- easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-4.0.6.eb | 2 +- easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-5.3.0.eb | 2 +- ...on-meep-1.4.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb | 12 +++++------- .../python-meep-1.4.2-goolf-1.4.10-Python-2.7.3.eb | 12 +++++------- .../python-meep-1.4.2-ictce-4.0.6-Python-2.7.3.eb | 12 +++++------- 5 files changed, 17 insertions(+), 23 deletions(-) diff --git a/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-4.0.6.eb b/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-4.0.6.eb index 99b133b3f5..15da01ed14 100644 --- a/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-4.0.6.eb @@ -16,7 +16,7 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -patches = ['Meep-%s_version-string-without-spaces.patch' % version] +patches = ['Meep-%(version)s_version-string-without-spaces.patch'] dependencies = [ ('Harminv', '1.3.1'), diff --git a/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-5.3.0.eb b/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-5.3.0.eb index 67e5d881fb..475c5f321c 100644 --- a/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/Meep/Meep-1.2-ictce-5.3.0.eb @@ -16,7 +16,7 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -patches = ['Meep-%s_version-string-without-spaces.patch' % version] +patches = ['Meep-%(version)s_version-string-without-spaces.patch'] dependencies = [ ('Harminv', '1.3.1'), diff --git a/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 2643e2c09c..082e6cbbfd 100644 --- a/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -10,18 +10,16 @@ toolchainopts = {'pic': True, 'opt': True, 'optarch': True, 'usempi': True} source_urls = ["https://launchpad.net/python-meep/1.4/1.4/+download/"] sources = [SOURCELOWER_TAR] -patches = [ - 'MPI_destructor_1.3.patch' - ] +patches = ['MPI_destructor_1.3.patch'] python = 'Python' pythonver = '2.7.3' versionsuffix = '-%s-%s' % (python, pythonver) dependencies = [ - (python, pythonver), - ('Meep', '1.2'), - ('SWIG', '2.0.4', '-%s-%s' % (python, pythonver)) - ] + (python, pythonver), + ('Meep', '1.2'), +] +builddependencies = [('SWIG', '2.0.4', '-%s-%s' % (python, pythonver))] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-goolf-1.4.10-Python-2.7.3.eb index 67aaeea480..8656294b31 100644 --- a/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-goolf-1.4.10-Python-2.7.3.eb @@ -10,18 +10,16 @@ toolchainopts = {'pic': True, 'opt': True, 'optarch': True, 'usempi': True} source_urls = ["https://launchpad.net/python-meep/1.4/1.4/+download/"] sources = [SOURCELOWER_TAR] -patches = [ - 'MPI_destructor_1.3.patch' - ] +patches = ['MPI_destructor_1.3.patch'] python = 'Python' pythonver = '2.7.3' versionsuffix = '-%s-%s' % (python, pythonver) dependencies = [ - (python, pythonver), - ('Meep', '1.2'), - ('SWIG', '2.0.4', '-%s-%s' % (python, pythonver)) - ] + (python, pythonver), + ('Meep', '1.2'), +] +builddependencies = [('SWIG', '2.0.4', '-%s-%s' % (python, pythonver))] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-ictce-4.0.6-Python-2.7.3.eb index dccd4207fd..82f6fac9ed 100644 --- a/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-ictce-4.0.6-Python-2.7.3.eb @@ -10,18 +10,16 @@ toolchainopts = {'pic': True, 'opt': True, 'optarch': True, 'usempi': True} source_urls = ["https://launchpad.net/python-meep/1.4/1.4/+download/"] sources = [SOURCELOWER_TAR] -patches = [ - 'MPI_destructor_1.3.patch' - ] +patches = ['MPI_destructor_1.3.patch'] python = 'Python' pythonver = '2.7.3' versionsuffix = '-%s-%s' % (python, pythonver) dependencies = [ - (python, pythonver), - ('Meep', '1.2'), - ('SWIG', '2.0.4', '-%s-%s' % (python, pythonver)) - ] + (python, pythonver), + ('Meep', '1.2'), +] +builddependencies = [('SWIG', '2.0.4', '-%s-%s' % (python, pythonver))] moduleclass = 'devel' -- GitLab From 624f2876e96c7e4f6f38e78fec5f0d6a25a4f697 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 8 Apr 2015 13:16:10 +0200 Subject: [PATCH 0931/1217] add easyconfig for python-meep 1.4.2 on top of Python/2.7.9 and Meep/1.3 --- .../g/GMP/GMP-5.0.5-intel-2015a.eb | 22 ++++++++++++ .../g/guile/guile-1.8.8-intel-2015a.eb | 31 ++++++++++++++++ .../h/Harminv/Harminv-1.4-intel-2015a.eb | 19 ++++++++++ .../l/libctl/libctl-3.2.2-intel-2015a.eb | 20 +++++++++++ .../l/libffi/libffi-3.0.13-intel-2015a.eb | 25 +++++++++++++ .../l/libtool/libtool-2.4.2-intel-2015a.eb | 15 ++++++++ .../libunistring-0.9.3-intel-2015a.eb | 26 ++++++++++++++ .../m/Meep/Meep-1.3-intel-2015a.eb | 35 +++++++++++++++++++ .../pkg-config-0.27.1-intel-2015a.eb | 27 ++++++++++++++ ...1.4.2-intel-2015a-Python-2.7.9-Meep-1.3.eb | 27 ++++++++++++++ .../SWIG-3.0.5-intel-2015a-Python-2.7.9.eb | 23 ++++++++++++ 11 files changed, 270 insertions(+) create mode 100644 easybuild/easyconfigs/g/GMP/GMP-5.0.5-intel-2015a.eb create mode 100644 easybuild/easyconfigs/g/guile/guile-1.8.8-intel-2015a.eb create mode 100644 easybuild/easyconfigs/h/Harminv/Harminv-1.4-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libctl/libctl-3.2.2-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libffi/libffi-3.0.13-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-intel-2015a.eb create mode 100644 easybuild/easyconfigs/m/Meep/Meep-1.3-intel-2015a.eb create mode 100644 easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-intel-2015a-Python-2.7.9-Meep-1.3.eb create mode 100644 easybuild/easyconfigs/s/SWIG/SWIG-3.0.5-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/g/GMP/GMP-5.0.5-intel-2015a.eb b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-intel-2015a.eb new file mode 100644 index 0000000000..21b43d921f --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-5.0.5-intel-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '5.0.5' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, + operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [GNU_SOURCE] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-intel-2015a.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-intel-2015a.eb new file mode 100644 index 0000000000..abc19c54da --- /dev/null +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-intel-2015a.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'guile' +version = '1.8.8' + +homepage = 'http://www.gnu.org/software/guile' +description = """Guile is the GNU Ubiquitous Intelligent Language for Extensions, + the official extension language for the GNU operating system.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [ + ('libtool', '2.4.2'), + ('GMP', '5.0.5'), + ('libunistring', '0.9.3'), + ('pkg-config', '0.27.1'), + ('libffi', '3.0.13'), + ('libreadline', '6.2'), +] + +configopts = " --enable-error-on-warning=no" + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["guile", 'guile-config', 'guile-snarf', 'guile-tools']] + ["lib/libguile.a", "include/libguile.h"], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/h/Harminv/Harminv-1.4-intel-2015a.eb b/easybuild/easyconfigs/h/Harminv/Harminv-1.4-intel-2015a.eb new file mode 100644 index 0000000000..8b0afc7b1f --- /dev/null +++ b/easybuild/easyconfigs/h/Harminv/Harminv-1.4-intel-2015a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'Harminv' +version = '1.4' + +homepage = 'http://ab-initio.mit.edu/wiki/index.php/Harminv' +description = """Harminv is a free program (and accompanying library) to solve the problem of harmonic inversion - given + a discrete-time, finite-length signal that consists of a sum of finitely-many sinusoids (possibly exponentially decaying) + in a given bandwidth, it determines the frequencies, decay constants, amplitudes, and phases of those sinusoids.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'opt': True, 'unroll': True, 'optarch': True, 'pic': True, 'cstd': 'c99'} + +source_urls = ['http://ab-initio.mit.edu/harminv/'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic --with-blas=mkl_em64t --with-lapack=mkl_em64t --enable-shared" + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/l/libctl/libctl-3.2.2-intel-2015a.eb b/easybuild/easyconfigs/l/libctl/libctl-3.2.2-intel-2015a.eb new file mode 100644 index 0000000000..0de2f0bd93 --- /dev/null +++ b/easybuild/easyconfigs/l/libctl/libctl-3.2.2-intel-2015a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'libctl' +version = '3.2.2' + +homepage = 'http://ab-initio.mit.edu/libctl' +description = """libctl is a free Guile-based library implementing flexible control files for scientific simulations.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True} + +source_urls = ['http://ab-initio.mit.edu/libctl/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('guile', '1.8.8')] + +# fix for guile-config being broken because shebang line contains full path to bin/guile +configopts = 'GUILE_CONFIG="$EBROOTGUILE/bin/guile -e main -s $EBROOTGUILE/bin/guile-config"' + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-intel-2015a.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-intel-2015a.eb new file mode 100644 index 0000000000..1a559500ae --- /dev/null +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-intel-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libffi' +version = '3.0.13' + +homepage = 'http://sourceware.org/libffi/' +description = """The libffi library provides a portable, high level programming interface to various calling +conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [ + 'ftp://sourceware.org/pub/libffi/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', +] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['libffi-%(version)s_include-xmmintrin.patch'] + +sanity_check_paths = { + 'files': ['lib/libffi.%s' % SHLIB_EXT, 'lib/libffi.a'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2015a.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2015a.eb new file mode 100644 index 0000000000..eddb4ada02 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-intel-2015a.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.2' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://ftp.gnu.org/gnu/%s' % name.lower()] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-intel-2015a.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-intel-2015a.eb new file mode 100644 index 0000000000..93d202fc27 --- /dev/null +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-intel-2015a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'libunistring' +version = '0.9.3' + +homepage = 'http://www.gnu.org/software/libunistring/' +description = """This library provides functions for manipulating Unicode strings and for manipulating C strings + according to the Unicode standard.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +patches = ['libunistring_icc_builtin_nan-inf.patch'] + +parallel = 1 + +sanity_check_paths = { + 'files' : ['lib/libunistring.a', 'lib/libunistring.so', 'include/unistring'] + + ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', + 'stdio', 'str', 'types', 'wbrk', 'width']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/Meep/Meep-1.3-intel-2015a.eb b/easybuild/easyconfigs/m/Meep/Meep-1.3-intel-2015a.eb new file mode 100644 index 0000000000..270e349f06 --- /dev/null +++ b/easybuild/easyconfigs/m/Meep/Meep-1.3-intel-2015a.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'Meep' +version = '1.3' + +homepage = 'http://ab-initio.mit.edu/wiki/index.php/Meep' +description = """Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package + developed at MIT to model electromagnetic systems.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'usempi': True, 'opt': True, 'optarch': True, 'unroll': True, 'pic': True} + +source_urls = [ + 'http://ab-initio.mit.edu/meep/', + 'http://ab-initio.mit.edu/meep/old/', +] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['Meep-1.2_version-string-without-spaces.patch'] + +dependencies = [ + ('Harminv', '1.4'), + ('HDF5', '1.8.14', '-gpfs'), + ('libctl', '3.2.2'), + ('GSL', '1.16'), + ('FFTW', '3.3.4') +] + +configopts = "--with-pic --with-mpi --with-blas=mkl_em64t --with-lapack=mkl_em64t --without-gcc-arch " +configopts += "--with-libctl=$EBROOTLIBCTL/share/libctl --enable-shared " + +# fix for guile-config being broken because shebang line contains full path to bin/guile +configopts += 'GUILE_CONFIG="$EBROOTGUILE/bin/guile -e main -s $EBROOTGUILE/bin/guile-config"' + +moduleclass = 'phys' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-intel-2015a.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-intel-2015a.eb new file mode 100644 index 0000000000..ddfabeac31 --- /dev/null +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-intel-2015a.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'pkg-config' +version = '0.27.1' + +homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' +description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the + correct compiler options on the command line so an application can use + gcc -o test test.c `pkg-config --libs --cflags glib-2.0` + for instance, rather than hard-coding values on where to find glib (or other libraries).""" + +# don't use PAX, it might break. +tar_config_opts = True + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://pkgconfig.freedesktop.org/releases/'] + +configopts = " --with-internal-glib" + +sanity_check_paths = { + 'files': ['bin/pkg-config'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-intel-2015a-Python-2.7.9-Meep-1.3.eb b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-intel-2015a-Python-2.7.9-Meep-1.3.eb new file mode 100644 index 0000000000..0da5220c97 --- /dev/null +++ b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-intel-2015a-Python-2.7.9-Meep-1.3.eb @@ -0,0 +1,27 @@ +name = 'python-meep' +version = '1.4.2' + +homepage = 'https://code.launchpad.net/python-meep' +description = """Python wrapper for the Meep FDTD solver.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True, 'usempi': True} + +source_urls = ["https://launchpad.net/python-meep/1.4/1.4/+download/"] +sources = [SOURCELOWER_TAR] + +patches = ['MPI_destructor_1.3.patch'] + +python = 'Python' +pythonver = '2.7.9' +meep = 'Meep' +meepver = '1.3' +versionsuffix = '-%s-%s-%s-%s' % (python, pythonver, meep, meepver) + +dependencies = [ + (python, pythonver), + (meep, meepver), +] +builddependencies = [('SWIG', '3.0.5', '-%s-%s' % (python, pythonver))] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-3.0.5-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.5-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..3193585375 --- /dev/null +++ b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.5-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,23 @@ +name = 'SWIG' +version = '3.0.5' + +homepage = 'http://www.swig.org/' +description = """SWIG is a software development tool that connects programs written in C and C++ with + a variety of high-level programming languages.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +python = "Python" +pythonversion = '2.7.9' +versionsuffix = '-%s-%s' % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('PCRE', '8.36'), +] + +moduleclass = 'devel' -- GitLab From 42a68f8a93daf6e82791432ccb857a55cf7a41bf Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 8 Apr 2015 13:25:17 +0200 Subject: [PATCH 0932/1217] fix patch for Meep v1.3 --- easybuild/easyconfigs/m/Meep/Meep-1.3-intel-2015a.eb | 2 +- .../Meep/Meep-1.3_version-string-without-spaces.patch | 11 +++++++++++ 2 files changed, 12 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/m/Meep/Meep-1.3_version-string-without-spaces.patch diff --git a/easybuild/easyconfigs/m/Meep/Meep-1.3-intel-2015a.eb b/easybuild/easyconfigs/m/Meep/Meep-1.3-intel-2015a.eb index 270e349f06..822615186c 100644 --- a/easybuild/easyconfigs/m/Meep/Meep-1.3-intel-2015a.eb +++ b/easybuild/easyconfigs/m/Meep/Meep-1.3-intel-2015a.eb @@ -16,7 +16,7 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -patches = ['Meep-1.2_version-string-without-spaces.patch'] +patches = ['Meep-%(version)s_version-string-without-spaces.patch'] dependencies = [ ('Harminv', '1.4'), diff --git a/easybuild/easyconfigs/m/Meep/Meep-1.3_version-string-without-spaces.patch b/easybuild/easyconfigs/m/Meep/Meep-1.3_version-string-without-spaces.patch new file mode 100644 index 0000000000..90cebc9859 --- /dev/null +++ b/easybuild/easyconfigs/m/Meep/Meep-1.3_version-string-without-spaces.patch @@ -0,0 +1,11 @@ +--- meep-1.3/libctl/Makefile.in.orig 2015-03-31 17:47:53.000000000 +0200 ++++ meep-1.3/libctl/Makefile.in 2015-04-08 13:23:54.206192661 +0200 +@@ -369,7 +369,7 @@ + ############################################################################## + + # what is printed out when invoking your program with --version: +-VERSION_STRING = "Meep @VERSION@, Copyright (C) 2005-2015 Massachusetts Insitute of Technology." ++VERSION_STRING = "Meep_@VERSION@,_Copyright_(C)_2005-2015_Massachusetts_Insitute_of_Technology." + MY_DEFS = -DHAVE_CTL_HOOKS=1 -DHAVE_CTL_EXPORT_HOOK=1 + PROGRAM_NAME = meep + SPECIFICATION_FILE = $(PROGRAM_NAME).scm -- GitLab From 6c00f9fb66c618ea421c6b1e7c68dad7ea2a2543 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 8 Apr 2015 13:48:32 +0200 Subject: [PATCH 0933/1217] stick to SWIG 2.x for pyhton-meep --- ...1.4.2-intel-2015a-Python-2.7.9-Meep-1.3.eb | 2 +- .../SWIG-2.0.12-intel-2015a-Python-2.7.9.eb | 23 +++++++++++++++++++ 2 files changed, 24 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/s/SWIG/SWIG-2.0.12-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-intel-2015a-Python-2.7.9-Meep-1.3.eb b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-intel-2015a-Python-2.7.9-Meep-1.3.eb index 0da5220c97..f9f82b9d18 100644 --- a/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-intel-2015a-Python-2.7.9-Meep-1.3.eb +++ b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-intel-2015a-Python-2.7.9-Meep-1.3.eb @@ -22,6 +22,6 @@ dependencies = [ (python, pythonver), (meep, meepver), ] -builddependencies = [('SWIG', '3.0.5', '-%s-%s' % (python, pythonver))] +builddependencies = [('SWIG', '2.0.12', '-%s-%s' % (python, pythonver))] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-2.0.12-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.12-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..f049ac6af0 --- /dev/null +++ b/easybuild/easyconfigs/s/SWIG/SWIG-2.0.12-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,23 @@ +name = 'SWIG' +version = '2.0.12' + +homepage = 'http://www.swig.org/' +description = """SWIG is a software development tool that connects programs written in C and C++ with + a variety of high-level programming languages.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +python = "Python" +pythonversion = '2.7.9' +versionsuffix = '-%s-%s' % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('PCRE', '8.36'), +] + +moduleclass = 'devel' -- GitLab From f0c8dcfae8501554cfd63862bfa0b441efae38e9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 8 Apr 2015 13:53:07 +0200 Subject: [PATCH 0934/1217] add pandas extension to Python 2.7.9 easyconfigs --- easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb | 3 +++ easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb | 3 +++ easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb | 3 +++ 3 files changed, 9 insertions(+) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb index 0f382d98ba..d228f95a16 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb @@ -107,6 +107,9 @@ exts_list = [ ('pytz', '2014.10', { 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], }), + ('pandas', '0.16.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb index 4ec2b0ce97..e667c4f618 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb @@ -107,6 +107,9 @@ exts_list = [ ('pytz', '2014.10', { 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], }), + ('pandas', '0.16.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb index db9c0d75b8..06dcabeb70 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb @@ -110,6 +110,9 @@ exts_list = [ ('pytz', '2014.10', { 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], }), + ('pandas', '0.16.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], + }), ] moduleclass = 'lang' -- GitLab From 359a12c02b15b329634fd515b3141e29a5e7fdd9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 8 Apr 2015 14:17:17 +0200 Subject: [PATCH 0935/1217] fix remark, bump libreadline in guile easyconfig to 6.3 --- easybuild/easyconfigs/g/guile/guile-1.8.8-intel-2015a.eb | 2 +- .../python-meep-1.4.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb | 1 + .../python-meep/python-meep-1.4.2-goolf-1.4.10-Python-2.7.3.eb | 1 + .../p/python-meep/python-meep-1.4.2-ictce-4.0.6-Python-2.7.3.eb | 1 + .../python-meep-1.4.2-intel-2015a-Python-2.7.9-Meep-1.3.eb | 1 + 5 files changed, 5 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-intel-2015a.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-intel-2015a.eb index abc19c54da..d66e7cf118 100644 --- a/easybuild/easyconfigs/g/guile/guile-1.8.8-intel-2015a.eb +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-intel-2015a.eb @@ -18,7 +18,7 @@ dependencies = [ ('libunistring', '0.9.3'), ('pkg-config', '0.27.1'), ('libffi', '3.0.13'), - ('libreadline', '6.2'), + ('libreadline', '6.3'), ] configopts = " --enable-error-on-warning=no" diff --git a/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 082e6cbbfd..ee4f9a4c40 100644 --- a/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -20,6 +20,7 @@ dependencies = [ (python, pythonver), ('Meep', '1.2'), ] + builddependencies = [('SWIG', '2.0.4', '-%s-%s' % (python, pythonver))] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-goolf-1.4.10-Python-2.7.3.eb index 8656294b31..562323eb53 100644 --- a/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-goolf-1.4.10-Python-2.7.3.eb @@ -20,6 +20,7 @@ dependencies = [ (python, pythonver), ('Meep', '1.2'), ] + builddependencies = [('SWIG', '2.0.4', '-%s-%s' % (python, pythonver))] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-ictce-4.0.6-Python-2.7.3.eb index 82f6fac9ed..afe2d60a9b 100644 --- a/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-ictce-4.0.6-Python-2.7.3.eb @@ -20,6 +20,7 @@ dependencies = [ (python, pythonver), ('Meep', '1.2'), ] + builddependencies = [('SWIG', '2.0.4', '-%s-%s' % (python, pythonver))] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-intel-2015a-Python-2.7.9-Meep-1.3.eb b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-intel-2015a-Python-2.7.9-Meep-1.3.eb index f9f82b9d18..bfb66e3979 100644 --- a/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-intel-2015a-Python-2.7.9-Meep-1.3.eb +++ b/easybuild/easyconfigs/p/python-meep/python-meep-1.4.2-intel-2015a-Python-2.7.9-Meep-1.3.eb @@ -22,6 +22,7 @@ dependencies = [ (python, pythonver), (meep, meepver), ] + builddependencies = [('SWIG', '2.0.12', '-%s-%s' % (python, pythonver))] moduleclass = 'devel' -- GitLab From 1ec86e9797f2c27805ca03034fd796d2dd6e7709 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lum=C3=ADr=20Jasiok?= Date: Wed, 8 Apr 2015 15:06:27 +0200 Subject: [PATCH 0936/1217] Added LAPACK-3.5.0-gompi-1.5.16.eb --- LAPACK-3.5.0-gompi-1.5.16.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 LAPACK-3.5.0-gompi-1.5.16.eb diff --git a/LAPACK-3.5.0-gompi-1.5.16.eb b/LAPACK-3.5.0-gompi-1.5.16.eb new file mode 100644 index 0000000000..0027dce752 --- /dev/null +++ b/LAPACK-3.5.0-gompi-1.5.16.eb @@ -0,0 +1,15 @@ +name = 'LAPACK' +version = "3.5.0" + +homepage = 'http://www.netlib.org/lapack/' +description = """LAPACK is written in Fortran90 and provides routines for solving systems of + simultaneous linear equations, least-squares solutions of linear systems of equations, eigenvalue + problems, and singular value problems.""" + +toolchain = {'name': 'gompi', 'version': '1.5.16'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TGZ] +source_urls = [homepage] + +moduleclass = 'numlib' -- GitLab From 3b3cab12c5ae47fb540c24c3f9069006db5702a4 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lum=C3=ADr=20Jasiok?= Date: Wed, 8 Apr 2015 15:06:57 +0200 Subject: [PATCH 0937/1217] Added OpenBLAS-0.2.13-gompi-1.5.16-LAPACK-3.5.0 --- OpenBLAS-0.2.13-gompi-1.5.16-LAPACK-3.5.0.eb | 52 ++++++++++++++++++++ 1 file changed, 52 insertions(+) create mode 100644 OpenBLAS-0.2.13-gompi-1.5.16-LAPACK-3.5.0.eb diff --git a/OpenBLAS-0.2.13-gompi-1.5.16-LAPACK-3.5.0.eb b/OpenBLAS-0.2.13-gompi-1.5.16-LAPACK-3.5.0.eb new file mode 100644 index 0000000000..fe4211f53c --- /dev/null +++ b/OpenBLAS-0.2.13-gompi-1.5.16-LAPACK-3.5.0.eb @@ -0,0 +1,52 @@ +easyblock = 'ConfigureMake' + +name = 'OpenBLAS' +version = '0.2.13' + +lapackver = '3.5.0' +versionsuffix = '-LAPACK-%s' % lapackver + +homepage = 'http://xianyi.github.com/OpenBLAS/' +description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" + +toolchain = {'name': 'gompi', 'version': '1.5.16'} + +lapack_src = 'lapack-%s.tgz' % lapackver +large_src = 'large.tgz' +timing_src = 'timing.tgz' +sources = [ + 'v%(version)s.tar.gz', + lapack_src, + large_src, + timing_src, +] +source_urls = [ + # order matters, trying to download the LAPACK tarball from GitHub causes trouble + "http://www.netlib.org/lapack/", + "http://www.netlib.org/lapack/timing/", + "https://github.com/xianyi/OpenBLAS/archive/", +] + +patches = [ + (lapack_src, '.'), # copy LAPACK tarball to unpacked OpenBLAS dir + (large_src, '.'), + (timing_src, '.'), +] + +skipsteps = ['configure'] + +threading = 'USE_THREAD=1' +buildopts = 'BINARY=64 ' + threading + ' CC="$CC" FC="$F77"' +installopts = threading + " PREFIX=%(installdir)s" + +# extensive testing can be enabled by uncommenting the line below +#runtest = 'PATH=.:$PATH lapack-timing' + +sanity_check_paths = { + 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', + 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'numlib' -- GitLab From 917b1507a2042f4b0cb8dd0b26fbb5ee77668169 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lum=C3=ADr=20Jasiok?= Date: Wed, 8 Apr 2015 15:07:36 +0200 Subject: [PATCH 0938/1217] Added FFTW-3.3.4-gompi-1.5.16 --- FFTW-3.3.4-gompi-1.5.16.eb | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 FFTW-3.3.4-gompi-1.5.16.eb diff --git a/FFTW-3.3.4-gompi-1.5.16.eb b/FFTW-3.3.4-gompi-1.5.16.eb new file mode 100644 index 0000000000..6ae444ae02 --- /dev/null +++ b/FFTW-3.3.4-gompi-1.5.16.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'gompi', 'version': '1.5.16'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-quad-precision", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' -- GitLab From 265f11d2a8c4be3d91b7821b2bac123aeb82fa8d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lum=C3=ADr=20Jasiok?= Date: Wed, 8 Apr 2015 15:08:19 +0200 Subject: [PATCH 0939/1217] Added ScaLAPACK-2.0.2-gompi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0 --- ...mpi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 ScaLAPACK-2.0.2-gompi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0.eb diff --git a/ScaLAPACK-2.0.2-gompi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/ScaLAPACK-2.0.2-gompi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0.eb new file mode 100644 index 0000000000..a52473e7ff --- /dev/null +++ b/ScaLAPACK-2.0.2-gompi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0.eb @@ -0,0 +1,25 @@ +name = 'ScaLAPACK' +version = '2.0.2' + +homepage = 'http://www.netlib.org/scalapack/' +description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines + redesigned for distributed memory MIMD parallel computers.""" + +toolchain = {'name': 'gompi', 'version': '1.5.16'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = [SOURCELOWER_TGZ] + +blaslib = 'OpenBLAS' +blasver = '0.2.13' +blassuff = '-LAPACK-3.5.0' + +versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) + +dependencies = [(blaslib, blasver, blassuff)] + +## parallel build tends to fail, so disabling it +parallel = 1 + +moduleclass = 'numlib' -- GitLab From 6bcfeee22cce3af60a529eaa801a54c5944e8eb2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lum=C3=ADr=20Jasiok?= Date: Wed, 8 Apr 2015 15:08:52 +0200 Subject: [PATCH 0940/1217] Added goolf-1.5.16 --- goolf-1.5.16.eb | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 goolf-1.5.16.eb diff --git a/goolf-1.5.16.eb b/goolf-1.5.16.eb new file mode 100644 index 0000000000..e9cea8d51b --- /dev/null +++ b/goolf-1.5.16.eb @@ -0,0 +1,37 @@ +easyblock = "Toolchain" + +name = 'goolf' +version = '1.5.16' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, including + OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +comp_name = 'GCC' +comp_version = '4.8.3' +comp = (comp_name, comp_version) + +blaslib = 'OpenBLAS' +blasver = '0.2.13' +blas = '%s-%s' % (blaslib, blasver) +blas_suff = '-LAPACK-3.5.0' + +# toolchain used to build goolf dependencies +comp_mpi_tc_name = 'gompi' +comp_mpi_tc_ver = "%s" % version +comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) + +# compiler toolchain dependencies +# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain +# because of toolchain preperation functions +dependencies = [ + comp, + ('OpenMPI', '1.6.5', '', comp), # part of gompi-1.5.16 + (blaslib, blasver, blas_suff, comp_mpi_tc), + ('FFTW', '3.3.4', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blas_suff), comp_mpi_tc) +] + +moduleclass = 'toolchain' -- GitLab From 589908c611d3899c8e3e9fbaa02105ff50281c8d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lum=C3=ADr=20Jasiok?= Date: Wed, 8 Apr 2015 15:21:42 +0200 Subject: [PATCH 0941/1217] easyconfigs moved to the right directories --- .../easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.16.eb | 0 .../easyconfigs/l/LAPACK/LAPACK-3.5.0-gompi-1.5.16.eb | 0 .../o/OpenBLAS/OpenBLAS-0.2.13-gompi-1.5.16-LAPACK-3.5.0.eb | 0 .../ScaLAPACK-2.0.2-gompi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0.eb | 0 4 files changed, 0 insertions(+), 0 deletions(-) rename FFTW-3.3.4-gompi-1.5.16.eb => easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.16.eb (100%) rename LAPACK-3.5.0-gompi-1.5.16.eb => easybuild/easyconfigs/l/LAPACK/LAPACK-3.5.0-gompi-1.5.16.eb (100%) rename OpenBLAS-0.2.13-gompi-1.5.16-LAPACK-3.5.0.eb => easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-gompi-1.5.16-LAPACK-3.5.0.eb (100%) rename ScaLAPACK-2.0.2-gompi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0.eb => easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0.eb (100%) diff --git a/FFTW-3.3.4-gompi-1.5.16.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.16.eb similarity index 100% rename from FFTW-3.3.4-gompi-1.5.16.eb rename to easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.16.eb diff --git a/LAPACK-3.5.0-gompi-1.5.16.eb b/easybuild/easyconfigs/l/LAPACK/LAPACK-3.5.0-gompi-1.5.16.eb similarity index 100% rename from LAPACK-3.5.0-gompi-1.5.16.eb rename to easybuild/easyconfigs/l/LAPACK/LAPACK-3.5.0-gompi-1.5.16.eb diff --git a/OpenBLAS-0.2.13-gompi-1.5.16-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-gompi-1.5.16-LAPACK-3.5.0.eb similarity index 100% rename from OpenBLAS-0.2.13-gompi-1.5.16-LAPACK-3.5.0.eb rename to easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-gompi-1.5.16-LAPACK-3.5.0.eb diff --git a/ScaLAPACK-2.0.2-gompi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0.eb similarity index 100% rename from ScaLAPACK-2.0.2-gompi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0.eb rename to easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0.eb -- GitLab From 026f640280842616cbb3aa9a2461b9c66444827e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lum=C3=ADr=20Jasiok?= Date: Wed, 8 Apr 2015 15:48:35 +0200 Subject: [PATCH 0942/1217] goolf-1.5.16 moved to the right directory --- goolf-1.5.16.eb => easybuild/easyconfigs/g/goolf/goolf-1.5.16.eb | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename goolf-1.5.16.eb => easybuild/easyconfigs/g/goolf/goolf-1.5.16.eb (100%) diff --git a/goolf-1.5.16.eb b/easybuild/easyconfigs/g/goolf/goolf-1.5.16.eb similarity index 100% rename from goolf-1.5.16.eb rename to easybuild/easyconfigs/g/goolf/goolf-1.5.16.eb -- GitLab From 597d8d8d4f62739c956f9b8cd431aeb96ff7525c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lum=C3=ADr=20Jasiok?= Date: Wed, 8 Apr 2015 16:21:52 +0200 Subject: [PATCH 0943/1217] Added HPL-2.0-goolf-1.5.16.eb --- .../easyconfigs/h/HPL/HPL-2.0-goolf-1.5.16.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.0-goolf-1.5.16.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.0-goolf-1.5.16.eb b/easybuild/easyconfigs/h/HPL/HPL-2.0-goolf-1.5.16.eb new file mode 100644 index 0000000000..d327bfbbab --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.0-goolf-1.5.16.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.0' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic +on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the +High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'goolf', 'version': '1.5.16'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' -- GitLab From 68012ca4f308fa11d9bff36163d41ad913384c5b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 8 Apr 2015 21:18:34 +0200 Subject: [PATCH 0944/1217] {data}[intel/2015a] h5py 2.5.0 (REVIEW) --- ...5py-2.5.0-intel-2015a-Python-2.7.9-gpfs.eb | 33 +++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015a-Python-2.7.9-gpfs.eb diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015a-Python-2.7.9-gpfs.eb b/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015a-Python-2.7.9-gpfs.eb new file mode 100644 index 0000000000..108b726ecc --- /dev/null +++ b/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015a-Python-2.7.9-gpfs.eb @@ -0,0 +1,33 @@ +easyblock = "PythonPackage" + +name = 'h5py' +version = '2.5.0' + +homepage = 'http://www.h5py.org/' +description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, + version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous + amounts of data.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'usempi': False} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonver = '2.7.9' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +hdf5suff = '-gpfs' +versionsuffix = '-%s-%s%s' % (python, pythonver, hdf5suff) + +dependencies = [ + (python, pythonver), + ('HDF5', '1.8.14', hdf5suff), +] + +sanity_check_paths = { + 'files': ['lib/python%s/site-packages/%%(name)s-%%(version)s-py%s-linux-x86_64.egg' % (pythonshortver, pythonshortver)], + 'dirs': [], +} + +moduleclass = 'data' -- GitLab From 5a881154a9d5bfd525dc3ae6a15f3ecb0ec95fc5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 8 Apr 2015 21:20:51 +0200 Subject: [PATCH 0945/1217] {math}[intel/2015a] numpy 1.9.2 + scipy 0.15.1 (REVIEW) --- .../numpy-1.9.2-intel-2015a-Python-2.7.9.eb | 26 +++++++++++++++++++ .../scipy-0.15.1-intel-2015a-Python-2.7.9.eb | 19 ++++++++++++++ 2 files changed, 45 insertions(+) create mode 100644 easybuild/easyconfigs/n/numpy/numpy-1.9.2-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/s/scipy/scipy-0.15.1-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.9.2-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/n/numpy/numpy-1.9.2-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..bc4a69d14c --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.9.2-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,26 @@ +name = 'numpy' +version = '1.9.2' + +homepage = 'http://www.numpy.org' +description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: + a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran + code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, + NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be + defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCE_TAR_GZ] + +patches = ['numpy-1.8.0-mkl.patch'] + +python = 'Python' +pyver = '2.7.9' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/scipy/scipy-0.15.1-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/scipy/scipy-0.15.1-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..f67514e591 --- /dev/null +++ b/easybuild/easyconfigs/s/scipy/scipy-0.15.1-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,19 @@ +name = 'scipy' +version = '0.15.1' +versionsuffix = '-Python-2.7.9' + +homepage = 'http://www.scipy.org' +description = """SciPy is a collection of mathematical algorithms and convenience + functions built on the Numpy extension for Python.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = [('http://sourceforge.net/projects/scipy/files/scipy/%(version)s', 'download')] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('numpy', '1.9.2', versionsuffix), +] + +moduleclass = 'math' -- GitLab From ee6196e68bae9e32808d708233440c569ad74500 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 8 Apr 2015 21:48:51 +0200 Subject: [PATCH 0946/1217] {vis}[intel/2015a] grace 5.1.23 (REVIEW) --- .../g/grace/grace-5.1.23-intel-2015a.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/g/grace/grace-5.1.23-intel-2015a.eb diff --git a/easybuild/easyconfigs/g/grace/grace-5.1.23-intel-2015a.eb b/easybuild/easyconfigs/g/grace/grace-5.1.23-intel-2015a.eb new file mode 100644 index 0000000000..208d216f7b --- /dev/null +++ b/easybuild/easyconfigs/g/grace/grace-5.1.23-intel-2015a.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'grace' +version = '5.1.23' + +homepage = 'http://freecode.com/projects/grace' +description = """Grace is a WYSIWYG 2D plotting tool for X Windows System and Motif.""" + +source_urls = ['ftp://plasma-gate.weizmann.ac.il/pub/grace/src/stable'] +sources = [SOURCE_TAR_GZ] + +toolchain = {'name': 'intel', 'version': '2015a'} + +dependencies = [ + ('motif', '2.3.4', '-libX11-1.6.3'), + ('netCDF', '4.3.2'), +] + +runtest = 'tests' + +# we also need to run make links right before or after make install. +installopts = 'links' + +sanity_check_paths = { + 'files': ['bin/xmgrace'], + 'dirs': [], +} + +moduleclass = 'vis' -- GitLab From e37e42a351a2dcfc55e6b7a82768600fe1acf6a3 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 9 Apr 2015 10:19:41 +0200 Subject: [PATCH 0947/1217] add easyconfigs for WIEN2k 14.1 and 14.2 with intel/2015a --- .../w/WIEN2k/WIEN2k-14.1-intel-2015a.eb | 46 +++++++++++++++++++ .../w/WIEN2k/WIEN2k-14.2-intel-2015a.eb | 40 ++++++++++++++++ 2 files changed, 86 insertions(+) create mode 100644 easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.2-intel-2015a.eb diff --git a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1-intel-2015a.eb b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1-intel-2015a.eb new file mode 100644 index 0000000000..a5d641a90f --- /dev/null +++ b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1-intel-2015a.eb @@ -0,0 +1,46 @@ +name = 'WIEN2k' +version = '14.1' + +homepage = 'http://www.wien2k.at/' +description = """The program package WIEN2k allows to perform electronic structure calculations of solids +using density functional theory (DFT). It is based on the full-potential (linearized) augmented plane-wave +((L)APW) + local orbitals (lo) method, one among the most accurate schemes for band structure calculations. +WIEN2k is an all-electron scheme including relativistic effects and has many features.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = ['%(name)s_%(version)s.tar'] +checksums = ['b926596ea86d505120af8829cec4814e'] + +patches = [ + 'WIEN2k-%(version)s_lapw5-main-accuracy-fix.patch', + 'WIEN2k-%(version)s_fix-tetra.patch', + 'WIEN2k-%(version)s_fix-x_lapw.patch', +] + +dependencies = [('FFTW', '3.3.4')] + +osdependencies = ['glib-devel'] # required for libpthread.a + +remote = 'pbsssh' +wien_mpirun = 'mpirun -np _NP_ -machinefile _HOSTS_ _EXEC_' +use_remote = True +mpi_remote = False +wien_granularity = True +taskset = 'no' + +tests = [ + # test case 1: NaCl + ('NaCl', '-b', '-i 3', [r'^:DIS.*0.1227', r'^:ENE.*-1248.1427']), + # test case 2: TiO2 + ('TiO2', + '-b -numk 1000 -rkmax 7.5', + '-in1ef -cc 0.00001 -fc 0.5 -i 100', + [ + r'^:ENE.*-4018.07', + r'^:FGL001.*\s+[0.]+\s+[0.]+\s+[0.]+\s+total forces', + r'^:FGL002.*14.63.*total forces', + ]), +] + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.2-intel-2015a.eb b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.2-intel-2015a.eb new file mode 100644 index 0000000000..5149928839 --- /dev/null +++ b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.2-intel-2015a.eb @@ -0,0 +1,40 @@ +name = 'WIEN2k' +version = '14.2' + +homepage = 'http://www.wien2k.at/' +description = """The program package WIEN2k allows to perform electronic structure calculations of solids +using density functional theory (DFT). It is based on the full-potential (linearized) augmented plane-wave +((L)APW) + local orbitals (lo) method, one among the most accurate schemes for band structure calculations. +WIEN2k is an all-electron scheme including relativistic effects and has many features.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = ['%(name)s_%(version)s.tar'] +checksums = ['1179be3b3bcb021af4c65fefea579ca6'] + +dependencies = [('FFTW', '3.3.4')] + +osdependencies = ['glib-devel'] # required for libpthread.a + +remote = 'pbsssh' +wien_mpirun = 'mpirun -np _NP_ -machinefile _HOSTS_ _EXEC_' +use_remote = True +mpi_remote = False +wien_granularity = True +taskset = 'no' + +tests = [ + # test case 1: NaCl + ('NaCl', '-b', '-i 3', [r'^:DIS.*0.1227', r'^:ENE.*-1248.1427']), + # test case 2: TiO2 + ('TiO2', + '-b -numk 1000 -rkmax 7.5', + '-in1ef -cc 0.00001 -fc 0.5 -i 100', + [ + r'^:ENE.*-4018.07', + r'^:FGL001.*\s+[0.]+\s+[0.]+\s+[0.]+\s+total forces', + r'^:FGL002.*14.63.*total forces', + ]), +] + +moduleclass = 'chem' -- GitLab From 838b269bf30cdb61ccdc69e7a6ef3deed8995455 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lum=C3=ADr=20Jasiok?= Date: Thu, 9 Apr 2015 12:59:00 +0200 Subject: [PATCH 0948/1217] Added GDAL-1.9.2-goolf-1.5.16 and zlib-1.2.8 dependency --- .../g/GDAL/GDAL-1.9.2-goolf-1.5.16.eb | 24 +++++++++++++++++++ .../z/zlib/zlib-1.2.8-goolf-1.5.16.eb | 22 +++++++++++++++++ 2 files changed, 46 insertions(+) create mode 100644 easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.5.16.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.16.eb diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.5.16.eb b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.5.16.eb new file mode 100644 index 0000000000..14deb76474 --- /dev/null +++ b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.5.16.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'GDAL' +version = '1.9.2' + +homepage = 'http://www.gdal.org/' +description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style + Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model + to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for + data translation and processing.""" + +toolchain = {'name': 'goolf', 'version': '1.5.16'} + +source_urls = ['http://download.osgeo.org/gdal/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +sanity_check_paths = { + 'files': ['lib/libgdal.so', 'lib/libgdal.a'], + 'dirs': ['bin', 'include'] +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.16.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.16.eb new file mode 100644 index 0000000000..9b56c2bffb --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.16.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'goolf', 'version': '1.5.16'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From c72cd834e99c897e89f4b93d4f1a9bd1b1155004 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 9 Apr 2015 13:36:29 +0200 Subject: [PATCH 0949/1217] fix remar --- .../h5py/h5py-2.5.0-intel-2015a-Python-2.7.9-gpfs.eb | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015a-Python-2.7.9-gpfs.eb b/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015a-Python-2.7.9-gpfs.eb index 108b726ecc..d6f4de7c55 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015a-Python-2.7.9-gpfs.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015a-Python-2.7.9-gpfs.eb @@ -9,24 +9,24 @@ description = """HDF5 for Python (h5py) is a general-purpose Python interface to amounts of data.""" toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'usempi': False} +toolchainopts = {'usempi': True} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] python = 'Python' -pythonver = '2.7.9' -pythonshortver = '.'.join(pythonver.split('.')[0:2]) +pyver = '2.7.9' +pyshortver = '.'.join(pyver.split('.')[0:2]) hdf5suff = '-gpfs' -versionsuffix = '-%s-%s%s' % (python, pythonver, hdf5suff) +versionsuffix = '-%s-%s%s' % (python, pyver, hdf5suff) dependencies = [ - (python, pythonver), + (python, pyver), ('HDF5', '1.8.14', hdf5suff), ] sanity_check_paths = { - 'files': ['lib/python%s/site-packages/%%(name)s-%%(version)s-py%s-linux-x86_64.egg' % (pythonshortver, pythonshortver)], + 'files': ['lib/python%(pv)s/site-packages/%%(name)s-%%(version)s-py%(pv)s-linux-x86_64.egg' % {'pv': pyshortver}], 'dirs': [], } -- GitLab From b5a1b36a088fed3e74c8594b5b8cbaae72fcaaff Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 9 Apr 2015 13:56:43 +0200 Subject: [PATCH 0950/1217] add easyconfigs for monty 0.6.4 and latest dev version by @gmatteo --- ...tel-2015a-Python-2.7.9-gmatteo-20150325.eb | 36 +++++++++++++++++++ .../monty-0.6.4-intel-2015a-Python-2.7.9.eb | 35 ++++++++++++++++++ 2 files changed, 71 insertions(+) create mode 100644 easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9-gmatteo-20150325.eb create mode 100644 easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9-gmatteo-20150325.eb b/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9-gmatteo-20150325.eb new file mode 100644 index 0000000000..14e4a5ef3b --- /dev/null +++ b/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9-gmatteo-20150325.eb @@ -0,0 +1,36 @@ +easyblock = "PythonPackage" + +name = 'monty' +version = '0.6.4' + +homepage = 'http://pypi.python.org/pypi/monty/' +description = """Monty implements supplementary useful functions for Python that are not part of the standard library. + Examples include useful utilities like transparent support for zipped files, useful design patterns such as singleton + and cached_class, and many more.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['https://github.com/gmatteo/monty/archive/'] +sources = ['3152d41.tar.gz'] +checksums = ['d8afe0556fd29191e66babb31750b7c4'] + +python = 'Python' +pythonversion = '2.7.9' + +versionsuffix = '-%s-%s-gmatteo-20150325' % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('PyYAML', '3.11', '-%s-%s' % (python, pythonversion)), +] + +py_short_ver = '.'.join(pythonversion.split('.')[0:2]) +pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) + +sanity_check_paths = { + 'files': [("%s-%%(version)s-py%s.egg" % (pylibdir, py_short_ver), + "%s-%%(version)s-py%s-linux-x86_64.egg" % (pylibdir, py_short_ver))], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..7d2b055f0b --- /dev/null +++ b/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,35 @@ +easyblock = "PythonPackage" + +name = 'monty' +version = '0.6.4' + +homepage = 'http://pypi.python.org/pypi/monty/' +description = """Monty implements supplementary useful functions for Python that are not part of the standard library. + Examples include useful utilities like transparent support for zipped files, useful design patterns such as singleton + and cached_class, and many more.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonversion = '2.7.9' + +versionsuffix = '-%s-%s' % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('PyYAML', '3.11', versionsuffix), +] + +py_short_ver = ".".join(pythonversion.split(".")[0:2]) +pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) + +sanity_check_paths = { + 'files': [("%s-%%(version)s-py%s.egg" % (pylibdir, py_short_ver), + "%s-%%(version)s-py%s-linux-x86_64.egg" % (pylibdir, py_short_ver))], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 81a2023fabbd4db4e95b6da25b663b08501efc0b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 9 Apr 2015 14:46:38 +0200 Subject: [PATCH 0951/1217] fix remark --- ...ty-0.6.4-intel-2015a-Python-2.7.9-gmatteo-20150325.eb | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9-gmatteo-20150325.eb b/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9-gmatteo-20150325.eb index 14e4a5ef3b..1dfd105d74 100644 --- a/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9-gmatteo-20150325.eb +++ b/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9-gmatteo-20150325.eb @@ -10,14 +10,17 @@ description = """Monty implements supplementary useful functions for Python that toolchain = {'name': 'intel', 'version': '2015a'} -source_urls = ['https://github.com/gmatteo/monty/archive/'] -sources = ['3152d41.tar.gz'] +commit = '3152d41' +extrasuff = 'gmatteo-20150325' + +source_urls = ['https://github.com/gmatteo/monty/archive/%s.tar.gz#' % commit] +sources = ['%%(name)s-%%(version)s-%s.tar.gz' % extrasuff] checksums = ['d8afe0556fd29191e66babb31750b7c4'] python = 'Python' pythonversion = '2.7.9' -versionsuffix = '-%s-%s-gmatteo-20150325' % (python, pythonversion) +versionsuffix = '-%s-%s-%s' % (python, pythonversion, extrasuff) dependencies = [ (python, pythonversion), -- GitLab From 9f2d54c31bf5d52e27f5da2c064c5f0bb503788c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 9 Apr 2015 14:51:44 +0200 Subject: [PATCH 0952/1217] {chem}[intel/2015a] pymatgen 3.0.13 + spglib 1.7.3 (REVIEW) --- ...tel-2015a-Python-2.7.9-gmatteo-20150407.eb | 39 +++++++++++++++++++ ...ymatgen-3.0.13-intel-2015a-Python-2.7.9.eb | 35 +++++++++++++++++ .../s/spglib/spglib-1.7.3-intel-2015a.eb | 21 ++++++++++ 3 files changed, 95 insertions(+) create mode 100644 easybuild/easyconfigs/p/pymatgen/pymatgen-3.0.13-intel-2015a-Python-2.7.9-gmatteo-20150407.eb create mode 100644 easybuild/easyconfigs/p/pymatgen/pymatgen-3.0.13-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/s/spglib/spglib-1.7.3-intel-2015a.eb diff --git a/easybuild/easyconfigs/p/pymatgen/pymatgen-3.0.13-intel-2015a-Python-2.7.9-gmatteo-20150407.eb b/easybuild/easyconfigs/p/pymatgen/pymatgen-3.0.13-intel-2015a-Python-2.7.9-gmatteo-20150407.eb new file mode 100644 index 0000000000..8e35e9a845 --- /dev/null +++ b/easybuild/easyconfigs/p/pymatgen/pymatgen-3.0.13-intel-2015a-Python-2.7.9-gmatteo-20150407.eb @@ -0,0 +1,39 @@ +easyblock = "PythonPackage" + +name = 'pymatgen' +version = '3.0.13' + +homepage = 'http://pypi.python.org/pypi/pymatgen' +description = """Python Materials Genomics is a robust materials analysis code that defines core object + representations for structures and molecules with support for many electronic structure codes.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +commit = 'd9b9a17' +extrasuff = 'gmatteo-20150407' + +source_urls = ['https://github.com/gmatteo/pymatgen/archive/%s.tar.gz#' % commit] +sources = ['%%(name)s-%%(version)s-%s.tar.gz' % extrasuff] +checksums = ['461ad0f8bb8109f547dc3b708240f85f'] + +python = 'Python' +pythonversion = '2.7.9' + +versionsuffix = '-%s-%s-%s' % (python, pythonversion, extrasuff) + +dependencies = [ + (python, pythonversion), + ('spglib', '1.7.3'), +] + +py_short_ver = '.'.join(pythonversion.split('.')[0:2]) +pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) + +sanity_check_paths = { + 'files': ['bin/pmg', 'bin/ipmg', + ("%s-%%(version)s-py%s.egg" % (pylibdir, py_short_ver), + "%s-%%(version)s-py%s-linux-x86_64.egg" % (pylibdir, py_short_ver))], + 'dirs': [], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/p/pymatgen/pymatgen-3.0.13-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/pymatgen/pymatgen-3.0.13-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..73ac37040a --- /dev/null +++ b/easybuild/easyconfigs/p/pymatgen/pymatgen-3.0.13-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,35 @@ +easyblock = "PythonPackage" + +name = 'pymatgen' +version = '3.0.13' + +homepage = 'http://pypi.python.org/pypi/pymatgen' +description = """Python Materials Genomics is a robust materials analysis code that defines core object + representations for structures and molecules with support for many electronic structure codes.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonversion = '2.7.9' + +versionsuffix = '-%s-%s' % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('spglib', '1.7.3'), +] + +py_short_ver = '.'.join(pythonversion.split('.')[0:2]) +pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) + +sanity_check_paths = { + 'files': ['bin/pmg', 'bin/ipmg', + ("%s-%%(version)s-py%s.egg" % (pylibdir, py_short_ver), + "%s-%%(version)s-py%s-linux-x86_64.egg" % (pylibdir, py_short_ver))], + 'dirs': [], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/s/spglib/spglib-1.7.3-intel-2015a.eb b/easybuild/easyconfigs/s/spglib/spglib-1.7.3-intel-2015a.eb new file mode 100644 index 0000000000..f6b34ab670 --- /dev/null +++ b/easybuild/easyconfigs/s/spglib/spglib-1.7.3-intel-2015a.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'spglib' +version = '1.7.3' + +homepage = 'http://spglib.sourceforge.net/' +description = """Spglib is a C library for finding and handling crystal symmetries.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCE_TAR_GZ] + +start_dir = '%(name)s-%(version)s' + +sanity_check_paths = { + 'files': ['lib/libsymspg.a', 'lib/libsymspg.so'], + 'dirs': ['include/spglib'], +} + +moduleclass = 'chem' -- GitLab From ac4f675693433096562844f8cb97cd3a2f9d33b6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 9 Apr 2015 16:23:44 +0200 Subject: [PATCH 0953/1217] {bio}[intel/2015a] FSL 5.0.8 + deps (REVIEW) --- .../f/FSL/FSL-5.0.8-intel-2015a.eb | 24 +++++++++++++++++ .../fixesproto/fixesproto-5.0-intel-2015a.eb | 19 ++++++++++++++ .../f/freeglut/freeglut-2.8.1-intel-2015a.eb | 21 +++++++++++++++ .../inputproto/inputproto-2.3-intel-2015a.eb | 19 ++++++++++++++ .../libXfixes/libXfixes-5.0.1-intel-2015a.eb | 24 +++++++++++++++++ .../l/libXi/libXi-1.7.4-intel-2015a.eb | 26 +++++++++++++++++++ 6 files changed, 133 insertions(+) create mode 100644 easybuild/easyconfigs/f/FSL/FSL-5.0.8-intel-2015a.eb create mode 100644 easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-intel-2015a.eb create mode 100644 easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-intel-2015a.eb create mode 100644 easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015a.eb diff --git a/easybuild/easyconfigs/f/FSL/FSL-5.0.8-intel-2015a.eb b/easybuild/easyconfigs/f/FSL/FSL-5.0.8-intel-2015a.eb new file mode 100644 index 0000000000..dd4d60386c --- /dev/null +++ b/easybuild/easyconfigs/f/FSL/FSL-5.0.8-intel-2015a.eb @@ -0,0 +1,24 @@ +name = 'FSL' +version = '5.0.8' + +homepage = 'http://www.fmrib.ox.ac.uk/fsl/' +description = """FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ["http://www.fmrib.ox.ac.uk/fsldownloads/"] +sources = ['%(namelower)s-%(version)s-sources.tar.gz'] + +patches = [ + 'FSL-%(version)s_makefile_fixes.patch', + 'FSL-%(version)s_ictce-wd803.patch', + 'FSL_icc_nan-inf_fix.patch', +] + +dependencies = [ + ('freeglut', '2.8.1'), + ('expat', '2.1.0'), + ('libX11', '1.6.3', '-Python-2.7.9'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-intel-2015a.eb b/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-intel-2015a.eb new file mode 100644 index 0000000000..5d430a5301 --- /dev/null +++ b/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-intel-2015a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'fixesproto' +version = '5.0' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org FixesProto protocol headers.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/xfixesproto.h', 'include/X11/extensions/xfixeswire.h'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-intel-2015a.eb b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-intel-2015a.eb new file mode 100644 index 0000000000..f501cd2fef --- /dev/null +++ b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-intel-2015a.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'freeglut' +version = '2.8.1' + +homepage = 'http://freeglut.sourceforge.net/' +description = "freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library." + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(name)s'] + +dependencies = [('libXi', '1.7.4')] + +sanity_check_paths = { + 'files': ['lib/libglut.a', 'lib/libglut.so'], + 'dirs': ['include/GL'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2015a.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2015a.eb new file mode 100644 index 0000000000..0437a042db --- /dev/null +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3-intel-2015a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'inputproto' +version = '2.3' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org InputProto protocol headers.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in ['XI2.h', 'XI.h', 'XIproto.h', 'XI2proto.h']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-intel-2015a.eb b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-intel-2015a.eb new file mode 100644 index 0000000000..3129ec62b1 --- /dev/null +++ b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-intel-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libXfixes' +version = '5.0.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X Fixes extension library""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +dependencies = [ + ('fixesproto', '5.0'), + ('xextproto', '7.3.0'), +] + +sanity_check_paths = { + 'files' : ['include/X11/extensions/Xfixes.h', 'lib/libXfixes.a', 'lib/libXfixes.so'], + 'dirs' : [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015a.eb b/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015a.eb new file mode 100644 index 0000000000..20988d4e6e --- /dev/null +++ b/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' +name = 'libXi' +version = '1.7.4' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """LibXi provides an X Window System client interface to the XINPUT extension to the X protocol.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +dependencies = [ + ('xproto', '7.0.27'), + ('xextproto', '7.3.0'), + ('libXext', '1.3.3'), + ('inputproto', '2.3'), + ('libXfixes', '5.0.1'), +] + +sanity_check_paths = { + 'files' : ['include/X11/extensions/XInput.h', 'include/X11/extensions/XInput2.h', 'lib/libXi.so', 'lib/libXi.a'], + 'dirs' : [], +} + +moduleclass = 'vis' -- GitLab From a18dadcaa3b0401c4c7fdf1d826147da8957a989 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 9 Apr 2015 16:37:44 +0200 Subject: [PATCH 0954/1217] add missing patch file for FSL --- .../f/FSL/FSL-5.0.8_makefile_fixes.patch | 343 ++++++++++++++++++ 1 file changed, 343 insertions(+) create mode 100644 easybuild/easyconfigs/f/FSL/FSL-5.0.8_makefile_fixes.patch diff --git a/easybuild/easyconfigs/f/FSL/FSL-5.0.8_makefile_fixes.patch b/easybuild/easyconfigs/f/FSL/FSL-5.0.8_makefile_fixes.patch new file mode 100644 index 0000000000..908f2f4205 --- /dev/null +++ b/easybuild/easyconfigs/f/FSL/FSL-5.0.8_makefile_fixes.patch @@ -0,0 +1,343 @@ +diff -ru fsl.orig/config/apple-darwin10-gcc4.2/systemvars.mk fsl/config/apple-darwin10-gcc4.2/systemvars.mk +--- fsl.orig/config/apple-darwin10-gcc4.2/systemvars.mk 2009-11-03 18:02:14.000000000 +0100 ++++ fsl/config/apple-darwin10-gcc4.2/systemvars.mk 2013-05-14 22:43:15.344366000 +0200 +@@ -3,8 +3,8 @@ + + # Compiler dependent variables + +-CC = cc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = + CXXSTATICFLAGS = + +diff -ru fsl.orig/config/apple-darwin7-gcc3.1/systemvars.mk fsl/config/apple-darwin7-gcc3.1/systemvars.mk +--- fsl.orig/config/apple-darwin7-gcc3.1/systemvars.mk 2007-07-13 13:00:20.000000000 +0200 ++++ fsl/config/apple-darwin7-gcc3.1/systemvars.mk 2013-05-14 22:43:15.363590000 +0200 +@@ -7,8 +7,8 @@ + + # Compiler dependent variables + +-CC = cc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = + CXXSTATICFLAGS = + +diff -ru fsl.orig/config/apple-darwin7-gcc3.3/systemvars.mk fsl/config/apple-darwin7-gcc3.3/systemvars.mk +--- fsl.orig/config/apple-darwin7-gcc3.3/systemvars.mk 2007-07-13 13:00:20.000000000 +0200 ++++ fsl/config/apple-darwin7-gcc3.3/systemvars.mk 2013-05-14 22:43:15.385466000 +0200 +@@ -7,8 +7,8 @@ + + # Compiler dependent variables + +-CC = cc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = + CXXSTATICFLAGS = + +diff -ru fsl.orig/config/apple-darwin8-gcc4.0/systemvars.mk fsl/config/apple-darwin8-gcc4.0/systemvars.mk +--- fsl.orig/config/apple-darwin8-gcc4.0/systemvars.mk 2007-12-19 15:40:57.000000000 +0100 ++++ fsl/config/apple-darwin8-gcc4.0/systemvars.mk 2013-05-14 22:43:15.402328000 +0200 +@@ -3,8 +3,8 @@ + + # Compiler dependent variables + +-CC = cc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = + CXXSTATICFLAGS = + +diff -ru fsl.orig/config/apple-darwin9-gcc4.0/systemvars.mk fsl/config/apple-darwin9-gcc4.0/systemvars.mk +--- fsl.orig/config/apple-darwin9-gcc4.0/systemvars.mk 2007-12-19 15:33:53.000000000 +0100 ++++ fsl/config/apple-darwin9-gcc4.0/systemvars.mk 2013-05-14 22:43:15.415331000 +0200 +@@ -3,8 +3,8 @@ + + # Compiler dependent variables + +-CC = cc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = + CXXSTATICFLAGS = + +diff -ru fsl.orig/config/generic/systemvars.mk fsl/config/generic/systemvars.mk +--- fsl.orig/config/generic/systemvars.mk 2007-07-13 13:00:20.000000000 +0200 ++++ fsl/config/generic/systemvars.mk 2013-05-14 22:43:15.438919000 +0200 +@@ -16,8 +16,8 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = -static + CXXSTATICFLAGS = -static + +diff -ru fsl.orig/config/i686-pc-cygwin-gcc3.2/systemvars.mk fsl/config/i686-pc-cygwin-gcc3.2/systemvars.mk +--- fsl.orig/config/i686-pc-cygwin-gcc3.2/systemvars.mk 2007-07-13 13:00:20.000000000 +0200 ++++ fsl/config/i686-pc-cygwin-gcc3.2/systemvars.mk 2013-05-14 22:43:15.455595000 +0200 +@@ -18,8 +18,8 @@ + + # Compiler dependent variables + +-CC = gcc-2 +-CXX = c++-2 ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = -static + CXXSTATICFLAGS = -static + +diff -ru fsl.orig/config/i686-pc-cygwin-gcc3.3/systemvars.mk fsl/config/i686-pc-cygwin-gcc3.3/systemvars.mk +--- fsl.orig/config/i686-pc-cygwin-gcc3.3/systemvars.mk 2007-07-13 13:00:20.000000000 +0200 ++++ fsl/config/i686-pc-cygwin-gcc3.3/systemvars.mk 2013-05-14 22:43:15.473639000 +0200 +@@ -18,8 +18,8 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = -static + CXXSTATICFLAGS = -static + +diff -ru fsl.orig/config/i686-pc-cygwin-gcc3.4/systemvars.mk fsl/config/i686-pc-cygwin-gcc3.4/systemvars.mk +--- fsl.orig/config/i686-pc-cygwin-gcc3.4/systemvars.mk 2007-07-13 13:00:20.000000000 +0200 ++++ fsl/config/i686-pc-cygwin-gcc3.4/systemvars.mk 2013-05-14 22:43:15.494398000 +0200 +@@ -18,8 +18,8 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = -static + CXXSTATICFLAGS = -static + +diff -ru fsl.orig/config/linux_32-gcc2.96/systemvars.mk fsl/config/linux_32-gcc2.96/systemvars.mk +--- fsl.orig/config/linux_32-gcc2.96/systemvars.mk 2007-07-25 17:21:07.000000000 +0200 ++++ fsl/config/linux_32-gcc2.96/systemvars.mk 2013-05-14 22:43:15.507210000 +0200 +@@ -18,8 +18,8 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = -static + CXXSTATICFLAGS = -static + +diff -ru fsl.orig/config/linux_32-gcc3.2/systemvars.mk fsl/config/linux_32-gcc3.2/systemvars.mk +--- fsl.orig/config/linux_32-gcc3.2/systemvars.mk 2007-07-25 17:21:08.000000000 +0200 ++++ fsl/config/linux_32-gcc3.2/systemvars.mk 2013-05-14 22:43:15.524309000 +0200 +@@ -18,8 +18,8 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = -static + CXXSTATICFLAGS = -static + +diff -ru fsl.orig/config/linux_32-gcc3.3/systemvars.mk fsl/config/linux_32-gcc3.3/systemvars.mk +--- fsl.orig/config/linux_32-gcc3.3/systemvars.mk 2007-07-25 17:21:09.000000000 +0200 ++++ fsl/config/linux_32-gcc3.3/systemvars.mk 2013-05-14 22:43:15.539643000 +0200 +@@ -18,8 +18,8 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = -static + CXXSTATICFLAGS = -static + +diff -ru fsl.orig/config/linux_32-gcc3.4/systemvars.mk fsl/config/linux_32-gcc3.4/systemvars.mk +--- fsl.orig/config/linux_32-gcc3.4/systemvars.mk 2007-07-25 17:21:10.000000000 +0200 ++++ fsl/config/linux_32-gcc3.4/systemvars.mk 2013-05-14 22:43:15.559881000 +0200 +@@ -18,8 +18,8 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = -static + CXXSTATICFLAGS = -static + +diff -ru fsl.orig/config/linux_32-gcc4.0/systemvars.mk fsl/config/linux_32-gcc4.0/systemvars.mk +--- fsl.orig/config/linux_32-gcc4.0/systemvars.mk 2007-07-25 17:21:11.000000000 +0200 ++++ fsl/config/linux_32-gcc4.0/systemvars.mk 2013-05-14 22:43:15.573696000 +0200 +@@ -18,8 +18,8 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = -static + CXXSTATICFLAGS = -static + +diff -ru fsl.orig/config/linux_32-gcc4.1/systemvars.mk fsl/config/linux_32-gcc4.1/systemvars.mk +--- fsl.orig/config/linux_32-gcc4.1/systemvars.mk 2012-04-20 11:37:28.000000000 +0200 ++++ fsl/config/linux_32-gcc4.1/systemvars.mk 2013-05-14 22:43:15.590022000 +0200 +@@ -18,8 +18,8 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = -static + CXXSTATICFLAGS = -static + +diff -ru fsl.orig/config/linux_64-gcc3.4/systemvars.mk fsl/config/linux_64-gcc3.4/systemvars.mk +--- fsl.orig/config/linux_64-gcc3.4/systemvars.mk 2007-07-25 17:21:12.000000000 +0200 ++++ fsl/config/linux_64-gcc3.4/systemvars.mk 2013-05-14 22:43:15.605655000 +0200 +@@ -18,8 +18,8 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = -static + CXXSTATICFLAGS = -static + +diff -ru fsl.orig/config/linux_64-gcc4.0/systemvars.mk fsl/config/linux_64-gcc4.0/systemvars.mk +--- fsl.orig/config/linux_64-gcc4.0/systemvars.mk 2007-07-25 17:21:13.000000000 +0200 ++++ fsl/config/linux_64-gcc4.0/systemvars.mk 2013-05-14 22:43:15.624046000 +0200 +@@ -18,8 +18,8 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = -static + CXXSTATICFLAGS = -static + +diff -ru fsl.orig/config/linux_64-gcc4.1/systemvars.mk fsl/config/linux_64-gcc4.1/systemvars.mk +--- fsl.orig/config/linux_64-gcc4.1/systemvars.mk 2007-07-25 11:19:45.000000000 +0200 ++++ fsl/config/linux_64-gcc4.1/systemvars.mk 2013-05-14 22:43:15.635678000 +0200 +@@ -18,8 +18,8 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = -static + CXXSTATICFLAGS = -static + +diff -ru fsl.orig/config/linux_64-gcc4.2/systemvars.mk fsl/config/linux_64-gcc4.2/systemvars.mk +--- fsl.orig/config/linux_64-gcc4.2/systemvars.mk 2008-06-26 15:25:42.000000000 +0200 ++++ fsl/config/linux_64-gcc4.2/systemvars.mk 2013-05-14 22:43:15.648658000 +0200 +@@ -18,8 +18,8 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = -static + CXXSTATICFLAGS = -static + +diff -ru fsl.orig/config/linux_64-gcc4.4/systemvars.mk fsl/config/linux_64-gcc4.4/systemvars.mk +--- fsl.orig/config/linux_64-gcc4.4/systemvars.mk 2012-08-22 17:17:13.000000000 +0200 ++++ fsl/config/linux_64-gcc4.4/systemvars.mk 2014-06-14 23:23:58.456480000 +0200 +@@ -18,8 +18,8 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + CSTATICFLAGS = -static + CXXSTATICFLAGS = -static + +diff -ru fsl.orig/config/sparc-solaris2.8-gcc2.95/systemvars.mk fsl/config/sparc-solaris2.8-gcc2.95/systemvars.mk +--- fsl.orig/config/sparc-solaris2.8-gcc2.95/systemvars.mk 2007-07-13 13:00:21.000000000 +0200 ++++ fsl/config/sparc-solaris2.8-gcc2.95/systemvars.mk 2013-05-14 22:43:15.658171000 +0200 +@@ -5,8 +5,8 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + + ARCHFLAGS = -mv8 -ffast-math -fomit-frame-pointer + +diff -ru fsl.orig/config/sparc-solaris2.9-gcc2.95/systemvars.mk fsl/config/sparc-solaris2.9-gcc2.95/systemvars.mk +--- fsl.orig/config/sparc-solaris2.9-gcc2.95/systemvars.mk 2007-07-13 13:00:21.000000000 +0200 ++++ fsl/config/sparc-solaris2.9-gcc2.95/systemvars.mk 2013-05-14 22:43:15.674176000 +0200 +@@ -5,8 +5,8 @@ + + # Compiler dependent variables + +-CC = gcc +-CXX = c++ ++CC := ${CC} ++CXX := ${CXX} + + ARCHFLAGS = -mv8 -ffast-math -fomit-frame-pointer + ARCHLDFLAGS = -static +diff -ru fsl.orig/src/libmeshutils/Makefile fsl/src/libmeshutils/Makefile +--- fsl.orig/src/libmeshutils/Makefile 2012-07-23 15:25:20.000000000 +0200 ++++ fsl/src/libmeshutils/Makefile 2013-05-14 22:43:15.320209000 +0200 +@@ -3,7 +3,7 @@ + + PROJNAME = meshUtils + +-LD_LIBRARY_PATH=${FSLDIR}/lib ++#LD_LIBRARY_PATH=${FSLDIR}/lib + + USRINCFLAGS = -I${INC_NEWMAT} -I${INC_ZLIB} -I${INC_PROB} -I${INC_BOOST} + USRLDFLAGS = -L${LIB_PROB} -L${LIB_NEWMAT} -L${LIB_ZLIB} +diff -ru fsl.orig/src/melodic/Makefile fsl/src/melodic/Makefile +--- fsl.orig/src/melodic/Makefile 2013-03-13 21:22:35.000000000 +0100 ++++ fsl/src/melodic/Makefile 2013-05-14 22:44:13.016352000 +0200 +@@ -3,7 +3,7 @@ + include ${FSLCONFDIR}/default.mk + + OPTFLAGS = -O3 -Wno-deprecated -ggdb +-OPTFLAGS_alphaev6-dec-osf5.0-gcc2.95.2 = -O3 -mieee -mfp-trap-mode=sui ++#OPTFLAGS_alphaev6-dec-osf5.0-gcc2.95.2 = -O3 -mieee -mfp-trap-mode=sui + + PROJNAME = melodic + +--- fsl/src/film/Makefile.orig 2014-06-15 00:43:34.908901000 +0200 ++++ fsl/src/film/Makefile 2014-06-15 00:43:52.303973000 +0200 +@@ -26,7 +26,7 @@ + ${CXX} ${CXXFLAGS} ${LDFLAGS} -o $@ ${OBJS} ftoz.o ${LIBS} + + film_gls:${OBJS} film_gls.o +- ${CXX} ${CXXFLAGS} ${LDFLAGS} -o $@ ${OBJS} film_gls.o ${LIBS} -l giftiio ++ ${CXX} ${CXXFLAGS} ${LDFLAGS} -o $@ ${OBJS} film_gls.o ${LIBS} -lgiftiio + + film_gls_res:${OBJS} film_gls_res.o + ${CXX} ${CXXFLAGS} ${LDFLAGS} -o $@ ${OBJS} film_gls_res.o ${LIBS} -- GitLab From 7855d8bc89e23f990ab0a32703cd16d209067fb2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 9 Apr 2015 17:11:42 +0200 Subject: [PATCH 0955/1217] add another missing patch file for FSL --- .../f/FSL/FSL-5.0.8_ictce-wd803.patch | 300 ++++++++++++++++++ 1 file changed, 300 insertions(+) create mode 100644 easybuild/easyconfigs/f/FSL/FSL-5.0.8_ictce-wd803.patch diff --git a/easybuild/easyconfigs/f/FSL/FSL-5.0.8_ictce-wd803.patch b/easybuild/easyconfigs/f/FSL/FSL-5.0.8_ictce-wd803.patch new file mode 100644 index 0000000000..c798885107 --- /dev/null +++ b/easybuild/easyconfigs/f/FSL/FSL-5.0.8_ictce-wd803.patch @@ -0,0 +1,300 @@ +diff -ru fsl.orig/fsl/config/apple-darwin10-gcc4.2/systemvars.mk fsl/config/apple-darwin10-gcc4.2/systemvars.mk +--- fsl.orig/fsl/config/apple-darwin10-gcc4.2/systemvars.mk 2013-05-15 00:14:37.710187000 +0200 ++++ fsl/config/apple-darwin10-gcc4.2/systemvars.mk 2013-05-15 00:19:46.085324000 +0200 +@@ -15,7 +15,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ++OPTFLAGS := ${CFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -Wno-long-long -ansi -pedantic + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/apple-darwin11-gcc4.2/systemvars.mk fsl/config/apple-darwin11-gcc4.2/systemvars.mk +--- fsl.orig/fsl/config/apple-darwin11-gcc4.2/systemvars.mk 2012-03-21 12:30:53.000000000 +0100 ++++ fsl/config/apple-darwin11-gcc4.2/systemvars.mk 2013-05-15 00:19:48.066557000 +0200 +@@ -15,7 +15,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 ++OPTFLAGS := -O3 -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -Wno-long-long -ansi -pedantic + ANSI_FLAGS = ${GNU_ANSI_FLAGS} +diff -ru fsl.orig/fsl/config/apple-darwin12-gcc4.2/systemvars.mk fsl/config/apple-darwin12-gcc4.2/systemvars.mk +--- fsl.orig/fsl/config/apple-darwin12-gcc4.2/systemvars.mk 2013-04-09 18:00:32.000000000 +0200 ++++ fsl/config/apple-darwin12-gcc4.2/systemvars.mk 2013-05-15 00:19:49.812861000 +0200 +@@ -15,7 +15,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 ++OPTFLAGS := -O3 -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -Wno-long-long -ansi -pedantic + ANSI_FLAGS = ${GNU_ANSI_FLAGS} +diff -ru fsl.orig/fsl/config/apple-darwin7-gcc3.1/systemvars.mk fsl/config/apple-darwin7-gcc3.1/systemvars.mk +--- fsl.orig/fsl/config/apple-darwin7-gcc3.1/systemvars.mk 2013-05-15 00:14:37.712623000 +0200 ++++ fsl/config/apple-darwin7-gcc3.1/systemvars.mk 2013-05-15 00:19:51.866756000 +0200 +@@ -17,7 +17,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -traditional-cpp -Wall -Wno-long-long -Wno-long-double -ansi -pedantic + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/apple-darwin7-gcc3.3/systemvars.mk fsl/config/apple-darwin7-gcc3.3/systemvars.mk +--- fsl.orig/fsl/config/apple-darwin7-gcc3.3/systemvars.mk 2013-05-15 00:14:37.737794000 +0200 ++++ fsl/config/apple-darwin7-gcc3.3/systemvars.mk 2013-05-15 00:19:53.537845000 +0200 +@@ -17,7 +17,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -Wno-long-long -Wno-long-double -ansi -pedantic + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/apple-darwin8-gcc4.0/systemvars.mk fsl/config/apple-darwin8-gcc4.0/systemvars.mk +--- fsl.orig/fsl/config/apple-darwin8-gcc4.0/systemvars.mk 2013-05-15 00:14:37.745810000 +0200 ++++ fsl/config/apple-darwin8-gcc4.0/systemvars.mk 2013-05-15 00:19:55.229757000 +0200 +@@ -17,7 +17,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ++OPTFLAGS := ${CFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -Wno-long-long -Wno-long-double -ansi -pedantic + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/apple-darwin9-gcc4.0/systemvars.mk fsl/config/apple-darwin9-gcc4.0/systemvars.mk +--- fsl.orig/fsl/config/apple-darwin9-gcc4.0/systemvars.mk 2013-05-15 00:14:37.751696000 +0200 ++++ fsl/config/apple-darwin9-gcc4.0/systemvars.mk 2013-05-15 00:19:57.417620000 +0200 +@@ -17,7 +17,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ++OPTFLAGS := ${CFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -Wno-long-long -Wno-long-double -ansi -pedantic + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/generic/systemvars.mk fsl/config/generic/systemvars.mk +--- fsl.orig/fsl/config/generic/systemvars.mk 2013-05-15 00:14:37.757155000 +0200 ++++ fsl/config/generic/systemvars.mk 2013-05-15 00:19:59.724851000 +0200 +@@ -25,7 +25,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = + GNU_ANSI_FLAGS = -Wall -ansi -pedantic + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/gnu_64-gcc4.4/systemvars.mk fsl/config/gnu_64-gcc4.4/systemvars.mk +--- fsl.orig/fsl/config/gnu_64-gcc4.4/systemvars.mk 2011-04-19 10:47:52.000000000 +0200 ++++ fsl/config/gnu_64-gcc4.4/systemvars.mk 2013-05-15 00:20:03.204842000 +0200 +@@ -27,7 +27,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -ansi -pedantic -Wno-long-long + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/i686-pc-cygwin-gcc3.2/systemvars.mk fsl/config/i686-pc-cygwin-gcc3.2/systemvars.mk +--- fsl.orig/fsl/config/i686-pc-cygwin-gcc3.2/systemvars.mk 2013-05-15 00:14:37.763457000 +0200 ++++ fsl/config/i686-pc-cygwin-gcc3.2/systemvars.mk 2013-05-15 00:20:05.347565000 +0200 +@@ -27,7 +27,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -ansi -pedantic -Wno-deprecated + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/i686-pc-cygwin-gcc3.3/systemvars.mk fsl/config/i686-pc-cygwin-gcc3.3/systemvars.mk +--- fsl.orig/fsl/config/i686-pc-cygwin-gcc3.3/systemvars.mk 2013-05-15 00:14:37.769108000 +0200 ++++ fsl/config/i686-pc-cygwin-gcc3.3/systemvars.mk 2013-05-15 00:20:06.913095000 +0200 +@@ -27,7 +27,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -ansi -pedantic -Wno-deprecated + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/i686-pc-cygwin-gcc3.4/systemvars.mk fsl/config/i686-pc-cygwin-gcc3.4/systemvars.mk +--- fsl.orig/fsl/config/i686-pc-cygwin-gcc3.4/systemvars.mk 2013-05-15 00:14:37.775138000 +0200 ++++ fsl/config/i686-pc-cygwin-gcc3.4/systemvars.mk 2013-05-15 00:20:08.480567000 +0200 +@@ -27,7 +27,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -ansi -pedantic -Wno-deprecated + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/linux_32-gcc2.96/systemvars.mk fsl/config/linux_32-gcc2.96/systemvars.mk +--- fsl.orig/fsl/config/linux_32-gcc2.96/systemvars.mk 2013-05-15 00:14:37.781755000 +0200 ++++ fsl/config/linux_32-gcc2.96/systemvars.mk 2013-05-15 00:20:10.043882000 +0200 +@@ -27,7 +27,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -ansi -pedantic + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/linux_32-gcc3.2/systemvars.mk fsl/config/linux_32-gcc3.2/systemvars.mk +--- fsl.orig/fsl/config/linux_32-gcc3.2/systemvars.mk 2013-05-15 00:14:37.787130000 +0200 ++++ fsl/config/linux_32-gcc3.2/systemvars.mk 2013-05-15 00:20:11.484066000 +0200 +@@ -27,7 +27,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -ansi -pedantic + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/linux_32-gcc3.3/systemvars.mk fsl/config/linux_32-gcc3.3/systemvars.mk +--- fsl.orig/fsl/config/linux_32-gcc3.3/systemvars.mk 2013-05-15 00:14:37.794387000 +0200 ++++ fsl/config/linux_32-gcc3.3/systemvars.mk 2013-05-15 00:20:12.921148000 +0200 +@@ -27,7 +27,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -ansi -pedantic -Wno-long-long + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/linux_32-gcc3.4/systemvars.mk fsl/config/linux_32-gcc3.4/systemvars.mk +--- fsl.orig/fsl/config/linux_32-gcc3.4/systemvars.mk 2013-05-15 00:14:37.799247000 +0200 ++++ fsl/config/linux_32-gcc3.4/systemvars.mk 2013-05-15 00:20:14.478184000 +0200 +@@ -27,7 +27,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -ansi -pedantic -Wno-long-long + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/linux_32-gcc4.0/systemvars.mk fsl/config/linux_32-gcc4.0/systemvars.mk +--- fsl.orig/fsl/config/linux_32-gcc4.0/systemvars.mk 2013-05-15 00:14:37.805358000 +0200 ++++ fsl/config/linux_32-gcc4.0/systemvars.mk 2013-05-15 00:20:16.819361000 +0200 +@@ -27,7 +27,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -ansi -pedantic + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/linux_32-gcc4.1/systemvars.mk fsl/config/linux_32-gcc4.1/systemvars.mk +--- fsl.orig/fsl/config/linux_32-gcc4.1/systemvars.mk 2013-05-15 00:14:37.811876000 +0200 ++++ fsl/config/linux_32-gcc4.1/systemvars.mk 2013-05-15 00:20:18.322853000 +0200 +@@ -27,7 +27,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -ansi -pedantic -Wno-long-long + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/linux_64-gcc3.4/systemvars.mk fsl/config/linux_64-gcc3.4/systemvars.mk +--- fsl.orig/fsl/config/linux_64-gcc3.4/systemvars.mk 2013-05-15 00:14:37.817395000 +0200 ++++ fsl/config/linux_64-gcc3.4/systemvars.mk 2013-05-15 00:20:20.465845000 +0200 +@@ -27,7 +27,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -ansi -pedantic -Wno-long-long + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/linux_64-gcc4.0/systemvars.mk fsl/config/linux_64-gcc4.0/systemvars.mk +--- fsl.orig/fsl/config/linux_64-gcc4.0/systemvars.mk 2013-05-15 00:14:37.823453000 +0200 ++++ fsl/config/linux_64-gcc4.0/systemvars.mk 2013-05-15 00:20:22.065237000 +0200 +@@ -27,7 +27,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -ansi -pedantic -Wno-long-long + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/linux_64-gcc4.1/systemvars.mk fsl/config/linux_64-gcc4.1/systemvars.mk +--- fsl.orig/fsl/config/linux_64-gcc4.1/systemvars.mk 2013-05-15 00:14:37.829561000 +0200 ++++ fsl/config/linux_64-gcc4.1/systemvars.mk 2013-05-15 00:20:23.601865000 +0200 +@@ -27,7 +27,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -ansi -pedantic -Wno-long-long + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/linux_64-gcc4.2/systemvars.mk fsl/config/linux_64-gcc4.2/systemvars.mk +--- fsl.orig/fsl/config/linux_64-gcc4.2/systemvars.mk 2013-05-15 00:14:37.835868000 +0200 ++++ fsl/config/linux_64-gcc4.2/systemvars.mk 2013-05-15 00:20:25.058756000 +0200 +@@ -27,7 +27,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -ansi -pedantic -Wno-long-long + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/linux_64-gcc4.4/systemvars.mk fsl/config/linux_64-gcc4.4/systemvars.mk +--- fsl.orig/fsl/config/linux_64-gcc4.4/systemvars.mk 2012-08-22 17:17:13.000000000 +0200 ++++ fsl/config/linux_64-gcc4.4/systemvars.mk 2013-05-15 00:20:26.561348000 +0200 +@@ -29,7 +29,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = -g + GNU_ANSI_FLAGS = -Wall -ansi -pedantic -Wno-long-long + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/sparc-solaris2.8-gcc2.95/systemvars.mk fsl/config/sparc-solaris2.8-gcc2.95/systemvars.mk +--- fsl.orig/fsl/config/sparc-solaris2.8-gcc2.95/systemvars.mk 2013-05-15 00:14:37.841452000 +0200 ++++ fsl/config/sparc-solaris2.8-gcc2.95/systemvars.mk 2013-05-15 00:20:28.072793000 +0200 +@@ -12,7 +12,7 @@ + + DEPENDFLAGS = -MM + +-OPTFLAGS = -O6 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = + GNU_ANSI_FLAGS = -Wall -ansi -pedantic + SGI_ANSI_FLAGS = -ansi -fullwarn +diff -ru fsl.orig/fsl/config/sparc-solaris2.9-gcc2.95/systemvars.mk fsl/config/sparc-solaris2.9-gcc2.95/systemvars.mk +--- fsl.orig/fsl/config/sparc-solaris2.9-gcc2.95/systemvars.mk 2013-05-15 00:14:37.847832000 +0200 ++++ fsl/config/sparc-solaris2.9-gcc2.95/systemvars.mk 2013-05-15 00:20:29.505593000 +0200 +@@ -12,7 +12,7 @@ + ARCHLDFLAGS = -static + DEPENDFLAGS = -MM + +-OPTFLAGS = -O6 -fexpensive-optimizations ${ARCHFLAGS} ++OPTFLAGS := ${CFLAGS} ${ARCHFLAGS} -wd803 + MACHDBGFLAGS = + GNU_ANSI_FLAGS = -Wall -ansi -pedantic + SGI_ANSI_FLAGS = -ansi -fullwarn -- GitLab From 9fd5c72eb012bb71f7307a2472ab0d7edcfe7206 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 13 Apr 2015 09:36:10 +0200 Subject: [PATCH 0956/1217] First try at GCC 5.1 --- easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb | 47 + .../GCC/mpfr-3.1.2-allpatches-20141204.patch | 1628 +++++++++++++++++ 2 files changed, 1675 insertions(+) create mode 100644 easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb create mode 100644 easybuild/easyconfigs/g/GCC/mpfr-3.1.2-allpatches-20141204.patch diff --git a/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb b/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb new file mode 100644 index 0000000000..7a65f31c78 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb @@ -0,0 +1,47 @@ +name = "GCC" +version = '5.1.0' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +mpfr_version = '3.1.2' + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] + +sources = [ + SOURCELOWER_TAR_BZ2, + 'gmp-6.0.0a.tar.bz2', + 'mpfr-%s.tar.gz' % mpfr_version, + 'mpc-1.0.3.tar.gz', + 'isl-0.14.tar.bz2', +] + +patches = [('mpfr-%s-allpatches-20141204.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] + +checksums = [ + '37cdc2eb0adf92e421c0841748ac1471', # gcc-5.1.0.tar.bz2 + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'd6a1d5f8ddea3abd2cc3e98f58352d26', # mpc-1.0.3.tar.gz + 'acd347243fca5609e3df37dba47fd0bb', # isl-0.14.tar.bz2 + '58aec98d15982f9744a043d2f1c5af82', # mpfr-3.1.2-allpatches-20141204.patch +] + +languages = ['c', 'c++', 'fortran'] + +#withisl = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/mpfr-3.1.2-allpatches-20141204.patch b/easybuild/easyconfigs/g/GCC/mpfr-3.1.2-allpatches-20141204.patch new file mode 100644 index 0000000000..df1aaea434 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/mpfr-3.1.2-allpatches-20141204.patch @@ -0,0 +1,1628 @@ +# All mpfr patches as of 2014-12-04 +# taken from their website: http://www.mpfr.org/mpfr-current/#download +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2013-09-26 10:52:52.000000000 +0000 ++++ mpfr-3.1.2-b/PATCHES 2013-09-26 10:52:52.000000000 +0000 +@@ -0,0 +1 @@ ++exp_2 +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2013-03-13 15:37:28.000000000 +0000 ++++ mpfr-3.1.2-b/VERSION 2013-09-26 10:52:52.000000000 +0000 +@@ -1 +1 @@ +-3.1.2 ++3.1.2-p1 +diff -Naurd mpfr-3.1.2-a/src/exp_2.c mpfr-3.1.2-b/src/exp_2.c +--- mpfr-3.1.2-a/src/exp_2.c 2013-03-13 15:37:28.000000000 +0000 ++++ mpfr-3.1.2-b/src/exp_2.c 2013-09-26 10:52:52.000000000 +0000 +@@ -204,7 +204,7 @@ + for (k = 0; k < K; k++) + { + mpz_mul (ss, ss, ss); +- exps <<= 1; ++ exps *= 2; + exps += mpz_normalize (ss, ss, q); + } + mpfr_set_z (s, ss, MPFR_RNDN); +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2013-03-13 15:37:37.000000000 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2013-09-26 10:52:52.000000000 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2" ++#define MPFR_VERSION_STRING "3.1.2-p1" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2013-03-13 15:37:34.000000000 +0000 ++++ mpfr-3.1.2-b/src/version.c 2013-09-26 10:52:52.000000000 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2"; ++ return "3.1.2-p1"; + } +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2013-09-26 10:56:55.000000000 +0000 ++++ mpfr-3.1.2-b/PATCHES 2013-09-26 10:56:55.000000000 +0000 +@@ -0,0 +1 @@ ++fits-smallneg +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2013-09-26 10:52:52.000000000 +0000 ++++ mpfr-3.1.2-b/VERSION 2013-09-26 10:56:55.000000000 +0000 +@@ -1 +1 @@ +-3.1.2-p1 ++3.1.2-p2 +diff -Naurd mpfr-3.1.2-a/src/fits_u.h mpfr-3.1.2-b/src/fits_u.h +--- mpfr-3.1.2-a/src/fits_u.h 2013-03-13 15:37:35.000000000 +0000 ++++ mpfr-3.1.2-b/src/fits_u.h 2013-09-26 10:56:55.000000000 +0000 +@@ -32,17 +32,20 @@ + int res; + + if (MPFR_UNLIKELY (MPFR_IS_SINGULAR (f))) +- /* Zero always fit */ +- return MPFR_IS_ZERO (f) ? 1 : 0; +- else if (MPFR_IS_NEG (f)) +- /* Negative numbers don't fit */ +- return 0; +- /* now it fits if +- (a) f <= MAXIMUM +- (b) round(f, prec(slong), rnd) <= MAXIMUM */ ++ return MPFR_IS_ZERO (f) ? 1 : 0; /* Zero always fits */ + + e = MPFR_GET_EXP (f); + ++ if (MPFR_IS_NEG (f)) ++ return e >= 1 ? 0 /* f <= -1 does not fit */ ++ : rnd != MPFR_RNDN ? MPFR_IS_LIKE_RNDU (rnd, -1) /* directed mode */ ++ : e < 0 ? 1 /* f > -1/2 fits in MPFR_RNDN */ ++ : mpfr_powerof2_raw(f); /* -1/2 fits, -1 < f < -1/2 don't */ ++ ++ /* Now it fits if ++ (a) f <= MAXIMUM ++ (b) round(f, prec(slong), rnd) <= MAXIMUM */ ++ + /* first compute prec(MAXIMUM); fits in an int */ + for (s = MAXIMUM, prec = 0; s != 0; s /= 2, prec ++); + +diff -Naurd mpfr-3.1.2-a/src/fits_uintmax.c mpfr-3.1.2-b/src/fits_uintmax.c +--- mpfr-3.1.2-a/src/fits_uintmax.c 2013-03-13 15:37:33.000000000 +0000 ++++ mpfr-3.1.2-b/src/fits_uintmax.c 2013-09-26 10:56:55.000000000 +0000 +@@ -27,51 +27,19 @@ + #include "mpfr-intmax.h" + #include "mpfr-impl.h" + +-#ifdef _MPFR_H_HAVE_INTMAX_T +- +-/* We can't use fits_u.h <= mpfr_cmp_ui */ +-int +-mpfr_fits_uintmax_p (mpfr_srcptr f, mpfr_rnd_t rnd) +-{ +- mpfr_exp_t e; +- int prec; +- uintmax_t s; +- mpfr_t x; +- int res; +- +- if (MPFR_UNLIKELY (MPFR_IS_SINGULAR (f))) +- /* Zero always fit */ +- return MPFR_IS_ZERO (f) ? 1 : 0; +- else if (MPFR_IS_NEG (f)) +- /* Negative numbers don't fit */ +- return 0; +- /* now it fits if +- (a) f <= MAXIMUM +- (b) round(f, prec(slong), rnd) <= MAXIMUM */ +- +- e = MPFR_GET_EXP (f); +- +- /* first compute prec(MAXIMUM); fits in an int */ +- for (s = MPFR_UINTMAX_MAX, prec = 0; s != 0; s /= 2, prec ++); +- +- /* MAXIMUM needs prec bits, i.e. MAXIMUM = 2^prec - 1 */ +- +- /* if e <= prec - 1, then f < 2^(prec-1) < MAXIMUM */ +- if (e <= prec - 1) +- return 1; ++/* Note: though mpfr-impl.h is included in fits_u.h, we also include it ++ above so that it gets included even when _MPFR_H_HAVE_INTMAX_T is not ++ defined; this is necessary to avoid an empty translation unit, which ++ is forbidden by ISO C. Without this, a failing test can be reproduced ++ by creating an invalid stdint.h somewhere in the default include path ++ and by compiling MPFR with "gcc -ansi -pedantic-errors". */ + +- /* if e >= prec + 1, then f >= 2^prec > MAXIMUM */ +- if (e >= prec + 1) +- return 0; ++#ifdef _MPFR_H_HAVE_INTMAX_T + +- MPFR_ASSERTD (e == prec); ++#define FUNCTION mpfr_fits_uintmax_p ++#define MAXIMUM MPFR_UINTMAX_MAX ++#define TYPE uintmax_t + +- /* hard case: first round to prec bits, then check */ +- mpfr_init2 (x, prec); +- mpfr_set (x, f, rnd); +- res = MPFR_GET_EXP (x) == e; +- mpfr_clear (x); +- return res; +-} ++#include "fits_u.h" + + #endif +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2013-09-26 10:52:52.000000000 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2013-09-26 10:56:55.000000000 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p1" ++#define MPFR_VERSION_STRING "3.1.2-p2" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2013-09-26 10:52:52.000000000 +0000 ++++ mpfr-3.1.2-b/src/version.c 2013-09-26 10:56:55.000000000 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p1"; ++ return "3.1.2-p2"; + } +diff -Naurd mpfr-3.1.2-a/tests/tfits.c mpfr-3.1.2-b/tests/tfits.c +--- mpfr-3.1.2-a/tests/tfits.c 2013-03-13 15:37:45.000000000 +0000 ++++ mpfr-3.1.2-b/tests/tfits.c 2013-09-26 10:56:55.000000000 +0000 +@@ -33,155 +33,176 @@ + #include "mpfr-intmax.h" + #include "mpfr-test.h" + +-#define ERROR1 { printf("Initial error for x="); mpfr_dump(x); exit(1); } +-#define ERROR2 { printf("Error for x="); mpfr_dump(x); exit(1); } ++#define ERROR1(N) \ ++ do \ ++ { \ ++ printf("Error %d for rnd = %s and x = ", N, \ ++ mpfr_print_rnd_mode ((mpfr_rnd_t) r)); \ ++ mpfr_dump(x); \ ++ exit(1); \ ++ } \ ++ while (0) + + static void check_intmax (void); + + int + main (void) + { +- mpfr_t x; ++ mpfr_t x, y; ++ int i, r; + + tests_start_mpfr (); + + mpfr_init2 (x, 256); ++ mpfr_init2 (y, 8); + +- /* Check NAN */ +- mpfr_set_nan (x); +- if (mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_slong_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_uint_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_ushort_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR1; ++ RND_LOOP (r) ++ { + +- /* Check INF */ +- mpfr_set_inf (x, 1); +- if (mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_slong_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_uint_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_ushort_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR1; ++ /* Check NAN */ ++ mpfr_set_nan (x); ++ if (mpfr_fits_ulong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (1); ++ if (mpfr_fits_slong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (2); ++ if (mpfr_fits_uint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (3); ++ if (mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (4); ++ if (mpfr_fits_ushort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (5); ++ if (mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (6); + +- /* Check Zero */ +- MPFR_SET_ZERO (x); +- if (!mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_slong_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_uint_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_ushort_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR2; ++ /* Check INF */ ++ mpfr_set_inf (x, 1); ++ if (mpfr_fits_ulong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (7); ++ if (mpfr_fits_slong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (8); ++ if (mpfr_fits_uint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (9); ++ if (mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (10); ++ if (mpfr_fits_ushort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (11); ++ if (mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (12); + +- /* Check small op */ +- mpfr_set_str1 (x, "1@-1"); +- if (!mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_slong_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_uint_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_ushort_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR2; ++ /* Check Zero */ ++ MPFR_SET_ZERO (x); ++ if (!mpfr_fits_ulong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (13); ++ if (!mpfr_fits_slong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (14); ++ if (!mpfr_fits_uint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (15); ++ if (!mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (16); ++ if (!mpfr_fits_ushort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (17); ++ if (!mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (18); + +- /* Check 17 */ +- mpfr_set_ui (x, 17, MPFR_RNDN); +- if (!mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_slong_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_uint_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_ushort_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR2; ++ /* Check small positive op */ ++ mpfr_set_str1 (x, "1@-1"); ++ if (!mpfr_fits_ulong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (19); ++ if (!mpfr_fits_slong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (20); ++ if (!mpfr_fits_uint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (21); ++ if (!mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (22); ++ if (!mpfr_fits_ushort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (23); ++ if (!mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (24); + +- /* Check all other values */ +- mpfr_set_ui (x, ULONG_MAX, MPFR_RNDN); +- mpfr_mul_2exp (x, x, 1, MPFR_RNDN); +- if (mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_slong_p (x, MPFR_RNDN)) +- ERROR1; +- mpfr_mul_2exp (x, x, 40, MPFR_RNDN); +- if (mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_uint_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_ushort_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR1; ++ /* Check 17 */ ++ mpfr_set_ui (x, 17, MPFR_RNDN); ++ if (!mpfr_fits_ulong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (25); ++ if (!mpfr_fits_slong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (26); ++ if (!mpfr_fits_uint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (27); ++ if (!mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (28); ++ if (!mpfr_fits_ushort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (29); ++ if (!mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (30); + +- mpfr_set_ui (x, ULONG_MAX, MPFR_RNDN); +- if (!mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR2; +- mpfr_set_ui (x, LONG_MAX, MPFR_RNDN); +- if (!mpfr_fits_slong_p (x, MPFR_RNDN)) +- ERROR2; +- mpfr_set_ui (x, UINT_MAX, MPFR_RNDN); +- if (!mpfr_fits_uint_p (x, MPFR_RNDN)) +- ERROR2; +- mpfr_set_ui (x, INT_MAX, MPFR_RNDN); +- if (!mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR2; +- mpfr_set_ui (x, USHRT_MAX, MPFR_RNDN); +- if (!mpfr_fits_ushort_p (x, MPFR_RNDN)) +- ERROR2; +- mpfr_set_ui (x, SHRT_MAX, MPFR_RNDN); +- if (!mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR2; ++ /* Check all other values */ ++ mpfr_set_ui (x, ULONG_MAX, MPFR_RNDN); ++ mpfr_mul_2exp (x, x, 1, MPFR_RNDN); ++ if (mpfr_fits_ulong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (31); ++ if (mpfr_fits_slong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (32); ++ mpfr_mul_2exp (x, x, 40, MPFR_RNDN); ++ if (mpfr_fits_ulong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (33); ++ if (mpfr_fits_uint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (34); ++ if (mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (35); ++ if (mpfr_fits_ushort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (36); ++ if (mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (37); + +- mpfr_set_si (x, 1, MPFR_RNDN); +- if (!mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR2; ++ mpfr_set_ui (x, ULONG_MAX, MPFR_RNDN); ++ if (!mpfr_fits_ulong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (38); ++ mpfr_set_ui (x, LONG_MAX, MPFR_RNDN); ++ if (!mpfr_fits_slong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (39); ++ mpfr_set_ui (x, UINT_MAX, MPFR_RNDN); ++ if (!mpfr_fits_uint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (40); ++ mpfr_set_ui (x, INT_MAX, MPFR_RNDN); ++ if (!mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (41); ++ mpfr_set_ui (x, USHRT_MAX, MPFR_RNDN); ++ if (!mpfr_fits_ushort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (42); ++ mpfr_set_ui (x, SHRT_MAX, MPFR_RNDN); ++ if (!mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (43); + +- /* Check negative value */ +- mpfr_set_si (x, -1, MPFR_RNDN); +- if (!mpfr_fits_sint_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_sshort_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_slong_p (x, MPFR_RNDN)) +- ERROR2; +- if (mpfr_fits_uint_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_ushort_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_ulong_p (x, MPFR_RNDN)) +- ERROR1; ++ mpfr_set_si (x, 1, MPFR_RNDN); ++ if (!mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (44); ++ if (!mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (45); ++ ++ /* Check negative op */ ++ for (i = 1; i <= 4; i++) ++ { ++ int inv; ++ ++ mpfr_set_si_2exp (x, -i, -2, MPFR_RNDN); ++ mpfr_rint (y, x, (mpfr_rnd_t) r); ++ inv = MPFR_NOTZERO (y); ++ if (!mpfr_fits_ulong_p (x, (mpfr_rnd_t) r) ^ inv) ++ ERROR1 (46); ++ if (!mpfr_fits_slong_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (47); ++ if (!mpfr_fits_uint_p (x, (mpfr_rnd_t) r) ^ inv) ++ ERROR1 (48); ++ if (!mpfr_fits_sint_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (49); ++ if (!mpfr_fits_ushort_p (x, (mpfr_rnd_t) r) ^ inv) ++ ERROR1 (50); ++ if (!mpfr_fits_sshort_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (51); ++ } ++ } + + mpfr_clear (x); ++ mpfr_clear (y); + + check_intmax (); + +@@ -189,85 +210,98 @@ + return 0; + } + +-static void check_intmax (void) ++static void ++check_intmax (void) + { + #ifdef _MPFR_H_HAVE_INTMAX_T +- mpfr_t x; ++ mpfr_t x, y; ++ int i, r; + +- mpfr_init2 (x, sizeof (uintmax_t)*CHAR_BIT); ++ mpfr_init2 (x, sizeof (uintmax_t) * CHAR_BIT); ++ mpfr_init2 (y, 8); + +- /* Check NAN */ +- mpfr_set_nan (x); +- if (mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR1; ++ RND_LOOP (r) ++ { ++ /* Check NAN */ ++ mpfr_set_nan (x); ++ if (mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (52); ++ if (mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (53); + +- /* Check INF */ +- mpfr_set_inf (x, 1); +- if (mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR1; ++ /* Check INF */ ++ mpfr_set_inf (x, 1); ++ if (mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (54); ++ if (mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (55); + +- /* Check Zero */ +- MPFR_SET_ZERO (x); +- if (!mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR2; ++ /* Check Zero */ ++ MPFR_SET_ZERO (x); ++ if (!mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (56); ++ if (!mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (57); + +- /* Check small op */ +- mpfr_set_str1 (x, "1@-1"); +- if (!mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR2; ++ /* Check positive small op */ ++ mpfr_set_str1 (x, "1@-1"); ++ if (!mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (58); ++ if (!mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (59); + +- /* Check 17 */ +- mpfr_set_ui (x, 17, MPFR_RNDN); +- if (!mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR2; +- if (!mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR2; ++ /* Check 17 */ ++ mpfr_set_ui (x, 17, MPFR_RNDN); ++ if (!mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (60); ++ if (!mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (61); + +- /* Check hugest */ +- mpfr_set_ui_2exp (x, 42, sizeof (uintmax_t) * 32, MPFR_RNDN); +- if (mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR1; +- if (mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR1; ++ /* Check hugest */ ++ mpfr_set_ui_2exp (x, 42, sizeof (uintmax_t) * 32, MPFR_RNDN); ++ if (mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (62); ++ if (mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (63); + +- /* Check all other values */ +- mpfr_set_uj (x, MPFR_UINTMAX_MAX, MPFR_RNDN); +- mpfr_add_ui (x, x, 1, MPFR_RNDN); +- if (mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR1; +- mpfr_set_uj (x, MPFR_UINTMAX_MAX, MPFR_RNDN); +- if (!mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR2; +- mpfr_set_sj (x, MPFR_INTMAX_MAX, MPFR_RNDN); +- mpfr_add_ui (x, x, 1, MPFR_RNDN); +- if (mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR1; +- mpfr_set_sj (x, MPFR_INTMAX_MAX, MPFR_RNDN); +- if (!mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR2; +- mpfr_set_sj (x, MPFR_INTMAX_MIN, MPFR_RNDN); +- if (!mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR2; +- mpfr_sub_ui (x, x, 1, MPFR_RNDN); +- if (mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR1; ++ /* Check all other values */ ++ mpfr_set_uj (x, MPFR_UINTMAX_MAX, MPFR_RNDN); ++ mpfr_add_ui (x, x, 1, MPFR_RNDN); ++ if (mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (64); ++ mpfr_set_uj (x, MPFR_UINTMAX_MAX, MPFR_RNDN); ++ if (!mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (65); ++ mpfr_set_sj (x, MPFR_INTMAX_MAX, MPFR_RNDN); ++ mpfr_add_ui (x, x, 1, MPFR_RNDN); ++ if (mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (66); ++ mpfr_set_sj (x, MPFR_INTMAX_MAX, MPFR_RNDN); ++ if (!mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (67); ++ mpfr_set_sj (x, MPFR_INTMAX_MIN, MPFR_RNDN); ++ if (!mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (68); ++ mpfr_sub_ui (x, x, 1, MPFR_RNDN); ++ if (mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (69); + +- /* Check negative value */ +- mpfr_set_si (x, -1, MPFR_RNDN); +- if (!mpfr_fits_intmax_p (x, MPFR_RNDN)) +- ERROR2; +- if (mpfr_fits_uintmax_p (x, MPFR_RNDN)) +- ERROR1; ++ /* Check negative op */ ++ for (i = 1; i <= 4; i++) ++ { ++ int inv; ++ ++ mpfr_set_si_2exp (x, -i, -2, MPFR_RNDN); ++ mpfr_rint (y, x, (mpfr_rnd_t) r); ++ inv = MPFR_NOTZERO (y); ++ if (!mpfr_fits_uintmax_p (x, (mpfr_rnd_t) r) ^ inv) ++ ERROR1 (70); ++ if (!mpfr_fits_intmax_p (x, (mpfr_rnd_t) r)) ++ ERROR1 (71); ++ } ++ } + + mpfr_clear (x); ++ mpfr_clear (y); + #endif + } +- +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2013-10-09 13:34:21.000000000 +0000 ++++ mpfr-3.1.2-b/PATCHES 2013-10-09 13:34:21.000000000 +0000 +@@ -0,0 +1 @@ ++clang-divby0 +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2013-09-26 10:52:52.000000000 +0000 ++++ mpfr-3.1.2-b/VERSION 2013-10-09 13:34:21.000000000 +0000 +@@ -1 +1 @@ +-3.1.2-p2 ++3.1.2-p3 +diff -Naurd mpfr-3.1.2-a/src/mpfr-impl.h mpfr-3.1.2-b/src/mpfr-impl.h +--- mpfr-3.1.2-a/src/mpfr-impl.h 2013-03-13 15:37:36.000000000 +0000 ++++ mpfr-3.1.2-b/src/mpfr-impl.h 2013-10-09 13:34:21.000000000 +0000 +@@ -468,8 +468,16 @@ + #define MPFR_LIMBS_PER_FLT ((IEEE_FLT_MANT_DIG-1)/GMP_NUMB_BITS+1) + + /* Visual C++ doesn't support +1.0/0.0, -1.0/0.0 and 0.0/0.0 +- at compile time. */ +-#if defined(_MSC_VER) && defined(_WIN32) && (_MSC_VER >= 1200) ++ at compile time. ++ Clang with -fsanitize=undefined is a bit similar due to a bug: ++ http://llvm.org/bugs/show_bug.cgi?id=17381 ++ but even without its sanitizer, it may be better to use the ++ double_zero version until IEEE 754 division by zero is properly ++ supported: ++ http://llvm.org/bugs/show_bug.cgi?id=17000 ++*/ ++#if (defined(_MSC_VER) && defined(_WIN32) && (_MSC_VER >= 1200)) || \ ++ defined(__clang__) + static double double_zero = 0.0; + # define DBL_NAN (double_zero/double_zero) + # define DBL_POS_INF ((double) 1.0/double_zero) +@@ -501,6 +509,8 @@ + (with Xcode 2.4.1, i.e. the latest one). */ + #define LVALUE(x) (&(x) == &(x) || &(x) != &(x)) + #define DOUBLE_ISINF(x) (LVALUE(x) && ((x) > DBL_MAX || (x) < -DBL_MAX)) ++/* The DOUBLE_ISNAN(x) macro is also valid on long double x ++ (assuming that the compiler isn't too broken). */ + #ifdef MPFR_NANISNAN + /* Avoid MIPSpro / IRIX64 / gcc -ffast-math (incorrect) optimizations. + The + must not be replaced by a ||. With gcc -ffast-math, NaN is +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2013-09-26 10:52:52.000000000 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2013-10-09 13:34:21.000000000 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p2" ++#define MPFR_VERSION_STRING "3.1.2-p3" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2013-09-26 10:52:52.000000000 +0000 ++++ mpfr-3.1.2-b/src/version.c 2013-10-09 13:34:21.000000000 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p2"; ++ return "3.1.2-p3"; + } +diff -Naurd mpfr-3.1.2-a/tests/tget_flt.c mpfr-3.1.2-b/tests/tget_flt.c +--- mpfr-3.1.2-a/tests/tget_flt.c 2013-03-13 15:37:44.000000000 +0000 ++++ mpfr-3.1.2-b/tests/tget_flt.c 2013-10-09 13:34:21.000000000 +0000 +@@ -28,9 +28,17 @@ + main (void) + { + mpfr_t x, y; +- float f, g, infp; ++ float f, g; + int i; ++#if !defined(MPFR_ERRDIVZERO) ++ float infp; ++#endif ++ ++ tests_start_mpfr (); + ++#if !defined(MPFR_ERRDIVZERO) ++ /* The definition of DBL_POS_INF involves a division by 0. This makes ++ "clang -O2 -fsanitize=undefined -fno-sanitize-recover" fail. */ + infp = (float) DBL_POS_INF; + if (infp * 0.5 != infp) + { +@@ -38,8 +46,7 @@ + fprintf (stderr, "(this is probably a compiler bug, please report)\n"); + exit (1); + } +- +- tests_start_mpfr (); ++#endif + + mpfr_init2 (x, 24); + mpfr_init2 (y, 24); +@@ -353,6 +360,7 @@ + printf ("expected %.8e, got %.8e\n", g, f); + exit (1); + } ++#if !defined(MPFR_ERRDIVZERO) + f = mpfr_get_flt (x, MPFR_RNDN); /* first round to 2^128 (even rule), + thus we should get +Inf */ + g = infp; +@@ -376,6 +384,7 @@ + printf ("expected %.8e, got %.8e\n", g, f); + exit (1); + } ++#endif + + mpfr_clear (x); + mpfr_clear (y); +diff -Naurd mpfr-3.1.2-a/tests/tset_ld.c mpfr-3.1.2-b/tests/tset_ld.c +--- mpfr-3.1.2-a/tests/tset_ld.c 2013-03-13 15:37:44.000000000 +0000 ++++ mpfr-3.1.2-b/tests/tset_ld.c 2013-10-09 13:34:21.000000000 +0000 +@@ -47,8 +47,11 @@ + static int + Isnan_ld (long double d) + { +- double e = (double) d; +- if (DOUBLE_ISNAN (e)) ++ /* Do not convert d to double as this can give an overflow, which ++ may confuse compilers without IEEE 754 support (such as clang ++ -fsanitize=undefined), or trigger a trap if enabled. ++ The DOUBLE_ISNAN macro should work fine on long double. */ ++ if (DOUBLE_ISNAN (d)) + return 1; + LONGDOUBLE_NAN_ACTION (d, goto yes); + return 0; +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2013-11-15 00:51:49.211333830 +0000 ++++ mpfr-3.1.2-b/PATCHES 2013-11-15 00:51:49.323334999 +0000 +@@ -0,0 +1 @@ ++printf-alt0 +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2013-11-15 00:51:49.211333830 +0000 ++++ mpfr-3.1.2-b/VERSION 2013-11-15 00:51:49.323334999 +0000 +@@ -1 +1 @@ +-3.1.2-p3 ++3.1.2-p4 +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2013-11-15 00:51:49.211333830 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2013-11-15 00:51:49.323334999 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p3" ++#define MPFR_VERSION_STRING "3.1.2-p4" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/vasprintf.c mpfr-3.1.2-b/src/vasprintf.c +--- mpfr-3.1.2-a/src/vasprintf.c 2013-03-13 15:37:37.000000000 +0000 ++++ mpfr-3.1.2-b/src/vasprintf.c 2013-11-15 00:51:49.267334408 +0000 +@@ -1040,7 +1040,7 @@ + } + + /* Determine the different parts of the string representation of the regular +- number P when SPEC.SPEC is 'e', 'E', 'g', or 'G'. ++ number P when spec.spec is 'e', 'E', 'g', or 'G'. + DEC_INFO contains the previously computed exponent and string or is NULL. + + return -1 if some field > INT_MAX */ +@@ -1167,7 +1167,7 @@ + } + + /* Determine the different parts of the string representation of the regular +- number P when SPEC.SPEC is 'f', 'F', 'g', or 'G'. ++ number P when spec.spec is 'f', 'F', 'g', or 'G'. + DEC_INFO contains the previously computed exponent and string or is NULL. + + return -1 if some field of number_parts is greater than INT_MAX */ +@@ -1559,7 +1559,7 @@ + /* fractional part */ + { + np->point = MPFR_DECIMAL_POINT; +- np->fp_trailing_zeros = (spec.spec == 'g' && spec.spec == 'G') ? ++ np->fp_trailing_zeros = (spec.spec == 'g' || spec.spec == 'G') ? + spec.prec - 1 : spec.prec; + } + else if (spec.alt) +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2013-11-15 00:51:49.211333830 +0000 ++++ mpfr-3.1.2-b/src/version.c 2013-11-15 00:51:49.323334999 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p3"; ++ return "3.1.2-p4"; + } +diff -Naurd mpfr-3.1.2-a/tests/tsprintf.c mpfr-3.1.2-b/tests/tsprintf.c +--- mpfr-3.1.2-a/tests/tsprintf.c 2013-03-13 15:37:44.000000000 +0000 ++++ mpfr-3.1.2-b/tests/tsprintf.c 2013-11-15 00:51:49.267334408 +0000 +@@ -456,10 +456,16 @@ + check_sprintf ("1.999900 ", "%-#10.7RG", x); + check_sprintf ("1.9999 ", "%-10.7RG", x); + mpfr_set_ui (x, 1, MPFR_RNDN); ++ check_sprintf ("1.", "%#.1Rg", x); ++ check_sprintf ("1. ", "%-#5.1Rg", x); ++ check_sprintf (" 1.0", "%#5.2Rg", x); + check_sprintf ("1.00000000000000000000000000000", "%#.30Rg", x); + check_sprintf ("1", "%.30Rg", x); + mpfr_set_ui (x, 0, MPFR_RNDN); +- check_sprintf ("0.000000000000000000000000000000", "%#.30Rg", x); ++ check_sprintf ("0.", "%#.1Rg", x); ++ check_sprintf ("0. ", "%-#5.1Rg", x); ++ check_sprintf (" 0.0", "%#5.2Rg", x); ++ check_sprintf ("0.00000000000000000000000000000", "%#.30Rg", x); + check_sprintf ("0", "%.30Rg", x); + + /* following tests with precision 53 bits */ +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2013-12-01 11:07:49.575329762 +0000 ++++ mpfr-3.1.2-b/PATCHES 2013-12-01 11:07:49.751331625 +0000 +@@ -0,0 +1 @@ ++custom_init_set +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2013-12-01 11:07:49.571329714 +0000 ++++ mpfr-3.1.2-b/VERSION 2013-12-01 11:07:49.747331585 +0000 +@@ -1 +1 @@ +-3.1.2-p4 ++3.1.2-p5 +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2013-12-01 11:07:49.571329714 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2013-12-01 11:07:49.747331585 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p4" ++#define MPFR_VERSION_STRING "3.1.2-p5" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +@@ -861,7 +861,7 @@ + _t = (mpfr_kind_t) _k; \ + _s = 1; \ + } else { \ +- _t = (mpfr_kind_t) -k; \ ++ _t = (mpfr_kind_t) - _k; \ + _s = -1; \ + } \ + _e = _t == MPFR_REGULAR_KIND ? (e) : \ +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2013-12-01 11:07:49.575329762 +0000 ++++ mpfr-3.1.2-b/src/version.c 2013-12-01 11:07:49.747331585 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p4"; ++ return "3.1.2-p5"; + } +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2014-04-15 21:56:49.609057464 +0000 ++++ mpfr-3.1.2-b/PATCHES 2014-04-15 21:56:49.697059857 +0000 +@@ -0,0 +1 @@ ++li2-return +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2014-04-15 21:56:49.609057464 +0000 ++++ mpfr-3.1.2-b/VERSION 2014-04-15 21:56:49.697059857 +0000 +@@ -1 +1 @@ +-3.1.2-p5 ++3.1.2-p6 +diff -Naurd mpfr-3.1.2-a/src/li2.c mpfr-3.1.2-b/src/li2.c +--- mpfr-3.1.2-a/src/li2.c 2013-03-13 15:37:32.000000000 +0000 ++++ mpfr-3.1.2-b/src/li2.c 2014-04-15 21:56:49.653058661 +0000 +@@ -630,5 +630,5 @@ + return mpfr_check_range (y, inexact, rnd_mode); + } + +- MPFR_ASSERTN (0); /* should never reach this point */ ++ MPFR_RET_NEVER_GO_HERE (); + } +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2014-04-15 21:56:49.609057464 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2014-04-15 21:56:49.697059857 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p5" ++#define MPFR_VERSION_STRING "3.1.2-p6" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2014-04-15 21:56:49.609057464 +0000 ++++ mpfr-3.1.2-b/src/version.c 2014-04-15 21:56:49.697059857 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p5"; ++ return "3.1.2-p6"; + } +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2014-04-15 22:04:57.090286262 +0000 ++++ mpfr-3.1.2-b/PATCHES 2014-04-15 22:04:57.162288198 +0000 +@@ -0,0 +1 @@ ++exp3 +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2014-04-15 22:04:57.086286154 +0000 ++++ mpfr-3.1.2-b/VERSION 2014-04-15 22:04:57.162288198 +0000 +@@ -1 +1 @@ +-3.1.2-p6 ++3.1.2-p7 +diff -Naurd mpfr-3.1.2-a/src/exp3.c mpfr-3.1.2-b/src/exp3.c +--- mpfr-3.1.2-a/src/exp3.c 2013-03-13 15:37:34.000000000 +0000 ++++ mpfr-3.1.2-b/src/exp3.c 2014-04-15 22:04:57.126287230 +0000 +@@ -283,7 +283,7 @@ + } + } + +- if (mpfr_can_round (shift_x > 0 ? t : tmp, realprec, MPFR_RNDD, MPFR_RNDZ, ++ if (mpfr_can_round (shift_x > 0 ? t : tmp, realprec, MPFR_RNDN, MPFR_RNDZ, + MPFR_PREC(y) + (rnd_mode == MPFR_RNDN))) + { + inexact = mpfr_set (y, shift_x > 0 ? t : tmp, rnd_mode); +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2014-04-15 22:04:57.086286154 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2014-04-15 22:04:57.162288198 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p6" ++#define MPFR_VERSION_STRING "3.1.2-p7" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2014-04-15 22:04:57.090286262 +0000 ++++ mpfr-3.1.2-b/src/version.c 2014-04-15 22:04:57.162288198 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p6"; ++ return "3.1.2-p7"; + } +diff -Naurd mpfr-3.1.2-a/tests/texp.c mpfr-3.1.2-b/tests/texp.c +--- mpfr-3.1.2-a/tests/texp.c 2013-03-13 15:37:44.000000000 +0000 ++++ mpfr-3.1.2-b/tests/texp.c 2014-04-15 22:04:57.126287230 +0000 +@@ -150,6 +150,22 @@ + exit (1); + } + ++ mpfr_set_prec (x, 118); ++ mpfr_set_str_binary (x, "0.1110010100011101010000111110011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000E-86"); ++ mpfr_set_prec (y, 118); ++ mpfr_exp_2 (y, x, MPFR_RNDU); ++ mpfr_exp_3 (x, x, MPFR_RNDU); ++ if (mpfr_cmp (x, y)) ++ { ++ printf ("mpfr_exp_2 and mpfr_exp_3 differ for prec=118\n"); ++ printf ("mpfr_exp_2 gives "); ++ mpfr_out_str (stdout, 2, 0, y, MPFR_RNDN); ++ printf ("\nmpfr_exp_3 gives "); ++ mpfr_out_str (stdout, 2, 0, x, MPFR_RNDN); ++ printf ("\n"); ++ exit (1); ++ } ++ + mpfr_clear (x); + mpfr_clear (y); + return 0; +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2014-04-15 22:20:32.243481506 +0000 ++++ mpfr-3.1.2-b/PATCHES 2014-04-15 22:22:32.418722707 +0000 +@@ -0,0 +1 @@ ++gmp6-compat +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2014-04-15 22:20:20.755171478 +0000 ++++ mpfr-3.1.2-b/VERSION 2014-04-15 22:21:45.225450147 +0000 +@@ -1 +1 @@ +-3.1.2-p7 ++3.1.2-p8 +diff -Naurd mpfr-3.1.2-a/configure mpfr-3.1.2-b/configure +--- mpfr-3.1.2-a/configure 2013-03-13 15:38:20.000000000 +0000 ++++ mpfr-3.1.2-b/configure 2014-04-15 22:21:38.821277476 +0000 +@@ -14545,26 +14545,30 @@ + rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext + fi + +-if test "$use_gmp_build" = yes ; then +- { $as_echo "$as_me:${as_lineno-$LINENO}: checking for valid GMP_NUMB_BITS" >&5 +-$as_echo_n "checking for valid GMP_NUMB_BITS... " >&6; } +- if test "$cross_compiling" = yes; then : ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for GMP_NUMB_BITS and sizeof(mp_limb_t) consistency" >&5 ++$as_echo_n "checking for GMP_NUMB_BITS and sizeof(mp_limb_t) consistency... " >&6; } ++if test "$cross_compiling" = yes; then : + { $as_echo "$as_me:${as_lineno-$LINENO}: result: can't test" >&5 + $as_echo "can't test" >&6; } + else + cat confdefs.h - <<_ACEOF >conftest.$ac_ext + /* end confdefs.h. */ + ++#include + #include + #include "gmp.h" +-#include "gmp-impl.h" + + int + main () + { + +- return GMP_NUMB_BITS == BYTES_PER_MP_LIMB * CHAR_BIT +- && sizeof(mp_limb_t) == BYTES_PER_MP_LIMB ? 0 : 1; ++ if (GMP_NUMB_BITS == sizeof(mp_limb_t) * CHAR_BIT) ++ return 0; ++ fprintf (stderr, "GMP_NUMB_BITS = %ld\n", (long) GMP_NUMB_BITS); ++ fprintf (stderr, "sizeof(mp_limb_t) = %ld\n", (long) sizeof(mp_limb_t)); ++ fprintf (stderr, "sizeof(mp_limb_t) * CHAR_BIT = %ld != GMP_NUMB_BITS\n", ++ (long) (sizeof(mp_limb_t) * CHAR_BIT)); ++ return 1; + + ; + return 0; +@@ -14577,14 +14581,14 @@ + + { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 + $as_echo "no" >&6; } +- as_fn_error $? "GMP_NUMB_BITS is incorrect. +-You probably need to change some of the GMP or MPFR compile options." "$LINENO" 5 ++ as_fn_error $? "GMP_NUMB_BITS and sizeof(mp_limb_t) are not consistent. ++You probably need to change some of the GMP or MPFR compile options. ++See 'config.log' for details (search for GMP_NUMB_BITS)." "$LINENO" 5 + fi + rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \ + conftest.$ac_objext conftest.beam conftest.$ac_ext + fi + +-fi + + + if test "$dont_link_with_gmp" = yes ; then +diff -Naurd mpfr-3.1.2-a/configure.ac mpfr-3.1.2-b/configure.ac +--- mpfr-3.1.2-a/configure.ac 2013-03-13 15:37:46.000000000 +0000 ++++ mpfr-3.1.2-b/configure.ac 2013-03-13 15:37:46.000000000 +0000 +@@ -435,23 +435,29 @@ + ]) + fi + +-dnl Check for valid GMP_NUMB_BITS and BYTES_PER_MP_LIMB ++dnl Check for GMP_NUMB_BITS and sizeof(mp_limb_t) consistency. ++dnl Problems may occur if gmp.h was generated with some ABI ++dnl and is used with another ABI (or if nails are used). + dnl This test doesn't need to link with libgmp (at least it shouldn't). +-if test "$use_gmp_build" = yes ; then +- AC_MSG_CHECKING(for valid GMP_NUMB_BITS) +- AC_RUN_IFELSE([AC_LANG_PROGRAM([[ ++AC_MSG_CHECKING(for GMP_NUMB_BITS and sizeof(mp_limb_t) consistency) ++AC_RUN_IFELSE([AC_LANG_PROGRAM([[ ++#include + #include + #include "gmp.h" +-#include "gmp-impl.h" + ]], [[ +- return GMP_NUMB_BITS == BYTES_PER_MP_LIMB * CHAR_BIT +- && sizeof(mp_limb_t) == BYTES_PER_MP_LIMB ? 0 : 1; ++ if (GMP_NUMB_BITS == sizeof(mp_limb_t) * CHAR_BIT) ++ return 0; ++ fprintf (stderr, "GMP_NUMB_BITS = %ld\n", (long) GMP_NUMB_BITS); ++ fprintf (stderr, "sizeof(mp_limb_t) = %ld\n", (long) sizeof(mp_limb_t)); ++ fprintf (stderr, "sizeof(mp_limb_t) * CHAR_BIT = %ld != GMP_NUMB_BITS\n", ++ (long) (sizeof(mp_limb_t) * CHAR_BIT)); ++ return 1; + ]])], [AC_MSG_RESULT(yes)], [ + AC_MSG_RESULT(no) +- AC_MSG_ERROR([GMP_NUMB_BITS is incorrect. +-You probably need to change some of the GMP or MPFR compile options.])], ++ AC_MSG_ERROR([GMP_NUMB_BITS and sizeof(mp_limb_t) are not consistent. ++You probably need to change some of the GMP or MPFR compile options. ++See 'config.log' for details (search for GMP_NUMB_BITS).])], + [AC_MSG_RESULT([can't test])]) +-fi + + + dnl We really need to link using libtool. But it is impossible with the current +diff -Naurd mpfr-3.1.2-a/src/init2.c mpfr-3.1.2-b/src/init2.c +--- mpfr-3.1.2-a/src/init2.c 2013-03-13 15:37:32.000000000 +0000 ++++ mpfr-3.1.2-b/src/init2.c 2014-04-15 22:21:06.220398489 +0000 +@@ -30,11 +30,11 @@ + + /* Check if we can represent the number of limbs + * associated to the maximum of mpfr_prec_t*/ +- MPFR_ASSERTN( MP_SIZE_T_MAX >= (MPFR_PREC_MAX/BYTES_PER_MP_LIMB) ); ++ MPFR_ASSERTN( MP_SIZE_T_MAX >= (MPFR_PREC_MAX/MPFR_BYTES_PER_MP_LIMB) ); + +- /* Check for correct GMP_NUMB_BITS and BYTES_PER_MP_LIMB */ +- MPFR_ASSERTN( GMP_NUMB_BITS == BYTES_PER_MP_LIMB * CHAR_BIT +- && sizeof(mp_limb_t) == BYTES_PER_MP_LIMB ); ++ /* Check for correct GMP_NUMB_BITS and MPFR_BYTES_PER_MP_LIMB */ ++ MPFR_ASSERTN( GMP_NUMB_BITS == MPFR_BYTES_PER_MP_LIMB * CHAR_BIT ++ && sizeof(mp_limb_t) == MPFR_BYTES_PER_MP_LIMB ); + + MPFR_ASSERTN (mp_bits_per_limb == GMP_NUMB_BITS); + +diff -Naurd mpfr-3.1.2-a/src/mpfr-gmp.h mpfr-3.1.2-b/src/mpfr-gmp.h +--- mpfr-3.1.2-a/src/mpfr-gmp.h 2013-03-13 15:37:32.000000000 +0000 ++++ mpfr-3.1.2-b/src/mpfr-gmp.h 2014-04-15 22:21:06.220398489 +0000 +@@ -72,7 +72,6 @@ + #endif + + /* Define some macros */ +-#define BYTES_PER_MP_LIMB (GMP_NUMB_BITS/CHAR_BIT) + + #define MP_LIMB_T_MAX (~(mp_limb_t)0) + +@@ -96,19 +95,19 @@ + #define SHRT_HIGHBIT SHRT_MIN + + /* MP_LIMB macros */ +-#define MPN_ZERO(dst, n) memset((dst), 0, (n)*BYTES_PER_MP_LIMB) +-#define MPN_COPY_DECR(dst,src,n) memmove((dst),(src),(n)*BYTES_PER_MP_LIMB) +-#define MPN_COPY_INCR(dst,src,n) memmove((dst),(src),(n)*BYTES_PER_MP_LIMB) ++#define MPN_ZERO(dst, n) memset((dst), 0, (n)*MPFR_BYTES_PER_MP_LIMB) ++#define MPN_COPY_DECR(dst,src,n) memmove((dst),(src),(n)*MPFR_BYTES_PER_MP_LIMB) ++#define MPN_COPY_INCR(dst,src,n) memmove((dst),(src),(n)*MPFR_BYTES_PER_MP_LIMB) + #define MPN_COPY(dst,src,n) \ + do \ + { \ + if ((dst) != (src)) \ + { \ + MPFR_ASSERTD ((char *) (dst) >= (char *) (src) + \ +- (n) * BYTES_PER_MP_LIMB || \ ++ (n) * MPFR_BYTES_PER_MP_LIMB || \ + (char *) (src) >= (char *) (dst) + \ +- (n) * BYTES_PER_MP_LIMB); \ +- memcpy ((dst), (src), (n) * BYTES_PER_MP_LIMB); \ ++ (n) * MPFR_BYTES_PER_MP_LIMB); \ ++ memcpy ((dst), (src), (n) * MPFR_BYTES_PER_MP_LIMB); \ + } \ + } \ + while (0) +diff -Naurd mpfr-3.1.2-a/src/mpfr-impl.h mpfr-3.1.2-b/src/mpfr-impl.h +--- mpfr-3.1.2-a/src/mpfr-impl.h 2013-10-09 13:34:21.000000000 +0000 ++++ mpfr-3.1.2-b/src/mpfr-impl.h 2014-04-15 22:21:06.220398489 +0000 +@@ -191,7 +191,7 @@ + # endif + #endif + +- ++#define MPFR_BYTES_PER_MP_LIMB (GMP_NUMB_BITS/CHAR_BIT) + + /****************************************************** + ******************** Check GMP *********************** +@@ -930,7 +930,7 @@ + #define MPFR_SET_ALLOC_SIZE(x, n) \ + ( ((mp_size_t*) MPFR_MANT(x))[-1] = n) + #define MPFR_MALLOC_SIZE(s) \ +- ( sizeof(mpfr_size_limb_t) + BYTES_PER_MP_LIMB * ((size_t) s) ) ++ ( sizeof(mpfr_size_limb_t) + MPFR_BYTES_PER_MP_LIMB * ((size_t) s) ) + #define MPFR_SET_MANT_PTR(x,p) \ + (MPFR_MANT(x) = (mp_limb_t*) ((mpfr_size_limb_t*) p + 1)) + #define MPFR_GET_REAL_PTR(x) \ +@@ -964,7 +964,7 @@ + #endif + + #define MPFR_TMP_LIMBS_ALLOC(N) \ +- ((mp_limb_t *) MPFR_TMP_ALLOC ((size_t) (N) * BYTES_PER_MP_LIMB)) ++ ((mp_limb_t *) MPFR_TMP_ALLOC ((size_t) (N) * MPFR_BYTES_PER_MP_LIMB)) + + /* temporary allocate 1 limb at xp, and initialize mpfr variable x */ + /* The temporary var doesn't have any size field, but it doesn't matter +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2014-04-15 22:20:20.755171478 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2014-04-15 22:21:45.225450147 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p7" ++#define MPFR_VERSION_STRING "3.1.2-p8" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/mul.c mpfr-3.1.2-b/src/mul.c +--- mpfr-3.1.2-a/src/mul.c 2013-03-13 15:37:37.000000000 +0000 ++++ mpfr-3.1.2-b/src/mul.c 2014-04-15 22:21:06.224398597 +0000 +@@ -106,7 +106,7 @@ + MPFR_ASSERTD(tn <= k); + + /* Check for no size_t overflow*/ +- MPFR_ASSERTD((size_t) k <= ((size_t) -1) / BYTES_PER_MP_LIMB); ++ MPFR_ASSERTD((size_t) k <= ((size_t) -1) / MPFR_BYTES_PER_MP_LIMB); + MPFR_TMP_MARK(marker); + tmp = MPFR_TMP_LIMBS_ALLOC (k); + +@@ -301,7 +301,7 @@ + MPFR_ASSERTD (tn <= k); /* tn <= k, thus no int overflow */ + + /* Check for no size_t overflow*/ +- MPFR_ASSERTD ((size_t) k <= ((size_t) -1) / BYTES_PER_MP_LIMB); ++ MPFR_ASSERTD ((size_t) k <= ((size_t) -1) / MPFR_BYTES_PER_MP_LIMB); + MPFR_TMP_MARK (marker); + tmp = MPFR_TMP_LIMBS_ALLOC (k); + +diff -Naurd mpfr-3.1.2-a/src/stack_interface.c mpfr-3.1.2-b/src/stack_interface.c +--- mpfr-3.1.2-a/src/stack_interface.c 2013-03-13 15:37:32.000000000 +0000 ++++ mpfr-3.1.2-b/src/stack_interface.c 2014-04-15 22:21:06.220398489 +0000 +@@ -26,7 +26,7 @@ + size_t + mpfr_custom_get_size (mpfr_prec_t prec) + { +- return MPFR_PREC2LIMBS (prec) * BYTES_PER_MP_LIMB; ++ return MPFR_PREC2LIMBS (prec) * MPFR_BYTES_PER_MP_LIMB; + } + + #undef mpfr_custom_init +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2014-04-15 22:20:20.755171478 +0000 ++++ mpfr-3.1.2-b/src/version.c 2014-04-15 22:21:45.225450147 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p7"; ++ return "3.1.2-p8"; + } +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2014-06-30 15:15:25.533266905 +0000 ++++ mpfr-3.1.2-b/PATCHES 2014-06-30 15:15:25.617269178 +0000 +@@ -0,0 +1 @@ ++div-overflow +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2014-06-30 15:15:25.529266797 +0000 ++++ mpfr-3.1.2-b/VERSION 2014-06-30 15:15:25.617269178 +0000 +@@ -1 +1 @@ +-3.1.2-p8 ++3.1.2-p9 +diff -Naurd mpfr-3.1.2-a/src/div.c mpfr-3.1.2-b/src/div.c +--- mpfr-3.1.2-a/src/div.c 2013-03-13 15:37:33.000000000 +0000 ++++ mpfr-3.1.2-b/src/div.c 2014-06-30 15:15:25.585268312 +0000 +@@ -750,7 +750,9 @@ + truncate_check_qh: + if (qh) + { +- qexp ++; ++ if (MPFR_LIKELY (qexp < MPFR_EXP_MAX)) ++ qexp ++; ++ /* else qexp is now incorrect, but one will still get an overflow */ + q0p[q0size - 1] = MPFR_LIMB_HIGHBIT; + } + goto truncate; +@@ -765,7 +767,9 @@ + inex = 1; /* always here */ + if (mpn_add_1 (q0p, q0p, q0size, MPFR_LIMB_ONE << sh)) + { +- qexp ++; ++ if (MPFR_LIKELY (qexp < MPFR_EXP_MAX)) ++ qexp ++; ++ /* else qexp is now incorrect, but one will still get an overflow */ + q0p[q0size - 1] = MPFR_LIMB_HIGHBIT; + } + +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2014-06-30 15:15:25.533266905 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2014-06-30 15:15:25.613269070 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p8" ++#define MPFR_VERSION_STRING "3.1.2-p9" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2014-06-30 15:15:25.533266905 +0000 ++++ mpfr-3.1.2-b/src/version.c 2014-06-30 15:15:25.613269070 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p8"; ++ return "3.1.2-p9"; + } +diff -Naurd mpfr-3.1.2-a/tests/tdiv.c mpfr-3.1.2-b/tests/tdiv.c +--- mpfr-3.1.2-a/tests/tdiv.c 2013-03-13 15:37:44.000000000 +0000 ++++ mpfr-3.1.2-b/tests/tdiv.c 2014-06-30 15:15:25.585268312 +0000 +@@ -1104,6 +1104,96 @@ + #define RAND_FUNCTION(x) mpfr_random2(x, MPFR_LIMB_SIZE (x), randlimb () % 100, RANDS) + #include "tgeneric.c" + ++static void ++test_extreme (void) ++{ ++ mpfr_t x, y, z; ++ mpfr_exp_t emin, emax; ++ mpfr_prec_t p[4] = { 8, 32, 64, 256 }; ++ int xi, yi, zi, j, r; ++ unsigned int flags, ex_flags; ++ ++ emin = mpfr_get_emin (); ++ emax = mpfr_get_emax (); ++ ++ mpfr_set_emin (MPFR_EMIN_MIN); ++ mpfr_set_emax (MPFR_EMAX_MAX); ++ ++ for (xi = 0; xi < 4; xi++) ++ { ++ mpfr_init2 (x, p[xi]); ++ mpfr_setmax (x, MPFR_EMAX_MAX); ++ MPFR_ASSERTN (mpfr_check (x)); ++ for (yi = 0; yi < 4; yi++) ++ { ++ mpfr_init2 (y, p[yi]); ++ mpfr_setmin (y, MPFR_EMIN_MIN); ++ for (j = 0; j < 2; j++) ++ { ++ MPFR_ASSERTN (mpfr_check (y)); ++ for (zi = 0; zi < 4; zi++) ++ { ++ mpfr_init2 (z, p[zi]); ++ RND_LOOP (r) ++ { ++ mpfr_clear_flags (); ++ mpfr_div (z, x, y, (mpfr_rnd_t) r); ++ flags = __gmpfr_flags; ++ MPFR_ASSERTN (mpfr_check (z)); ++ ex_flags = MPFR_FLAGS_OVERFLOW | MPFR_FLAGS_INEXACT; ++ if (flags != ex_flags) ++ { ++ printf ("Bad flags in test_extreme on z = a/b" ++ " with %s and\n", ++ mpfr_print_rnd_mode ((mpfr_rnd_t) r)); ++ printf ("a = "); ++ mpfr_dump (x); ++ printf ("b = "); ++ mpfr_dump (y); ++ printf ("Expected flags:"); ++ flags_out (ex_flags); ++ printf ("Got flags: "); ++ flags_out (flags); ++ printf ("z = "); ++ mpfr_dump (z); ++ exit (1); ++ } ++ mpfr_clear_flags (); ++ mpfr_div (z, y, x, (mpfr_rnd_t) r); ++ flags = __gmpfr_flags; ++ MPFR_ASSERTN (mpfr_check (z)); ++ ex_flags = MPFR_FLAGS_UNDERFLOW | MPFR_FLAGS_INEXACT; ++ if (flags != ex_flags) ++ { ++ printf ("Bad flags in test_extreme on z = a/b" ++ " with %s and\n", ++ mpfr_print_rnd_mode ((mpfr_rnd_t) r)); ++ printf ("a = "); ++ mpfr_dump (y); ++ printf ("b = "); ++ mpfr_dump (x); ++ printf ("Expected flags:"); ++ flags_out (ex_flags); ++ printf ("Got flags: "); ++ flags_out (flags); ++ printf ("z = "); ++ mpfr_dump (z); ++ exit (1); ++ } ++ } ++ mpfr_clear (z); ++ } /* zi */ ++ mpfr_nextabove (y); ++ } /* j */ ++ mpfr_clear (y); ++ } /* yi */ ++ mpfr_clear (x); ++ } /* xi */ ++ ++ set_emin (emin); ++ set_emax (emax); ++} ++ + int + main (int argc, char *argv[]) + { +@@ -1130,6 +1220,7 @@ + test_20070603 (); + test_20070628 (); + test_generic (2, 800, 50); ++ test_extreme (); + + tests_end_mpfr (); + return 0; +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2014-06-30 15:17:53.337268149 +0000 ++++ mpfr-3.1.2-b/PATCHES 2014-06-30 15:17:53.417270314 +0000 +@@ -0,0 +1 @@ ++vasprintf +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2014-06-30 15:17:53.337268149 +0000 ++++ mpfr-3.1.2-b/VERSION 2014-06-30 15:17:53.413270206 +0000 +@@ -1 +1 @@ +-3.1.2-p9 ++3.1.2-p10 +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2014-06-30 15:17:53.337268149 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2014-06-30 15:17:53.413270206 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p9" ++#define MPFR_VERSION_STRING "3.1.2-p10" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/vasprintf.c mpfr-3.1.2-b/src/vasprintf.c +--- mpfr-3.1.2-a/src/vasprintf.c 2013-11-15 00:51:49.267334408 +0000 ++++ mpfr-3.1.2-b/src/vasprintf.c 2014-06-30 15:17:53.377269231 +0000 +@@ -884,14 +884,18 @@ + first digit, we want the exponent for radix two and the decimal + point AFTER the first digit. */ + { +- MPFR_ASSERTN (exp > MPFR_EMIN_MIN /4); /* possible overflow */ ++ /* An integer overflow is normally not possible since MPFR_EXP_MIN ++ is twice as large as MPFR_EMIN_MIN. */ ++ MPFR_ASSERTN (exp > (MPFR_EXP_MIN + 3) / 4); + exp = (exp - 1) * 4; + } + else + /* EXP is the exponent for decimal point BEFORE the first digit, we + want the exponent for decimal point AFTER the first digit. */ + { +- MPFR_ASSERTN (exp > MPFR_EMIN_MIN); /* possible overflow */ ++ /* An integer overflow is normally not possible since MPFR_EXP_MIN ++ is twice as large as MPFR_EMIN_MIN. */ ++ MPFR_ASSERTN (exp > MPFR_EXP_MIN); + --exp; + } + } +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2014-06-30 15:17:53.337268149 +0000 ++++ mpfr-3.1.2-b/src/version.c 2014-06-30 15:17:53.413270206 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p9"; ++ return "3.1.2-p10"; + } +diff -Naurd mpfr-3.1.2-a/tests/tsprintf.c mpfr-3.1.2-b/tests/tsprintf.c +--- mpfr-3.1.2-a/tests/tsprintf.c 2013-11-15 00:51:49.267334408 +0000 ++++ mpfr-3.1.2-b/tests/tsprintf.c 2014-06-30 15:17:53.377269231 +0000 +@@ -1184,6 +1184,69 @@ + check_emax_aux (MPFR_EMAX_MAX); + } + ++static void ++check_emin_aux (mpfr_exp_t e) ++{ ++ mpfr_t x; ++ char *s1, s2[256]; ++ int i; ++ mpfr_exp_t emin; ++ mpz_t ee; ++ ++ MPFR_ASSERTN (e >= LONG_MIN); ++ emin = mpfr_get_emin (); ++ set_emin (e); ++ ++ mpfr_init2 (x, 16); ++ mpz_init (ee); ++ ++ mpfr_setmin (x, e); ++ mpz_set_si (ee, e); ++ mpz_sub_ui (ee, ee, 1); ++ ++ i = mpfr_asprintf (&s1, "%Ra", x); ++ MPFR_ASSERTN (i > 0); ++ ++ gmp_snprintf (s2, 256, "0x1p%Zd", ee); ++ ++ if (strcmp (s1, s2) != 0) ++ { ++ printf ("Error in check_emin_aux for emin = %ld\n", (long) e); ++ printf ("Expected %s\n", s2); ++ printf ("Got %s\n", s1); ++ exit (1); ++ } ++ ++ mpfr_free_str (s1); ++ ++ i = mpfr_asprintf (&s1, "%Rb", x); ++ MPFR_ASSERTN (i > 0); ++ ++ gmp_snprintf (s2, 256, "1p%Zd", ee); ++ ++ if (strcmp (s1, s2) != 0) ++ { ++ printf ("Error in check_emin_aux for emin = %ld\n", (long) e); ++ printf ("Expected %s\n", s2); ++ printf ("Got %s\n", s1); ++ exit (1); ++ } ++ ++ mpfr_free_str (s1); ++ ++ mpfr_clear (x); ++ mpz_clear (ee); ++ set_emin (emin); ++} ++ ++static void ++check_emin (void) ++{ ++ check_emin_aux (-15); ++ check_emin_aux (mpfr_get_emin ()); ++ check_emin_aux (MPFR_EMIN_MIN); ++} ++ + int + main (int argc, char **argv) + { +@@ -1203,6 +1266,7 @@ + decimal (); + mixed (); + check_emax (); ++ check_emin (); + + #if defined(HAVE_LOCALE_H) && defined(HAVE_SETLOCALE) + locale_da_DK (); +diff -Naurd mpfr-3.1.2-a/PATCHES mpfr-3.1.2-b/PATCHES +--- mpfr-3.1.2-a/PATCHES 2014-12-04 01:41:57.131789485 +0000 ++++ mpfr-3.1.2-b/PATCHES 2014-12-04 01:41:57.339791833 +0000 +@@ -0,0 +1 @@ ++strtofr +diff -Naurd mpfr-3.1.2-a/VERSION mpfr-3.1.2-b/VERSION +--- mpfr-3.1.2-a/VERSION 2014-12-04 01:41:57.127789443 +0000 ++++ mpfr-3.1.2-b/VERSION 2014-12-04 01:41:57.339791833 +0000 +@@ -1 +1 @@ +-3.1.2-p10 ++3.1.2-p11 +diff -Naurd mpfr-3.1.2-a/src/mpfr.h mpfr-3.1.2-b/src/mpfr.h +--- mpfr-3.1.2-a/src/mpfr.h 2014-12-04 01:41:57.127789443 +0000 ++++ mpfr-3.1.2-b/src/mpfr.h 2014-12-04 01:41:57.335791790 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 2 +-#define MPFR_VERSION_STRING "3.1.2-p10" ++#define MPFR_VERSION_STRING "3.1.2-p11" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.2-a/src/strtofr.c mpfr-3.1.2-b/src/strtofr.c +--- mpfr-3.1.2-a/src/strtofr.c 2013-03-13 15:37:32.000000000 +0000 ++++ mpfr-3.1.2-b/src/strtofr.c 2014-12-04 01:41:57.287791246 +0000 +@@ -473,8 +473,10 @@ + /* prec bits corresponds to ysize limbs */ + ysize_bits = ysize * GMP_NUMB_BITS; + /* and to ysize_bits >= prec > MPFR_PREC (x) bits */ +- y = MPFR_TMP_LIMBS_ALLOC (2 * ysize + 1); +- y += ysize; /* y has (ysize+1) allocated limbs */ ++ /* we need to allocate one more limb to work around bug ++ https://gmplib.org/list-archives/gmp-bugs/2013-December/003267.html */ ++ y = MPFR_TMP_LIMBS_ALLOC (2 * ysize + 2); ++ y += ysize; /* y has (ysize+2) allocated limbs */ + + /* pstr_size is the number of characters we read in pstr->mant + to have at least ysize full limbs. +diff -Naurd mpfr-3.1.2-a/src/version.c mpfr-3.1.2-b/src/version.c +--- mpfr-3.1.2-a/src/version.c 2014-12-04 01:41:57.131789485 +0000 ++++ mpfr-3.1.2-b/src/version.c 2014-12-04 01:41:57.339791833 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.2-p10"; ++ return "3.1.2-p11"; + } -- GitLab From 2aa2adf21c052863684bdcf72ca43b3d0d8225d9 Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Mon, 13 Apr 2015 15:57:08 +0200 Subject: [PATCH 0957/1217] Support Spark 1.3.0 --- easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb | 26 ++++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb diff --git a/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb b/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb new file mode 100644 index 0000000000..7f97113c7d --- /dev/null +++ b/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb @@ -0,0 +1,26 @@ +easyblock = 'Tarball' + +name = 'Spark' +version = '1.3.0' + +homepage = 'http://spark.apache.org' +description = """Spark is Hadoop MapReduce done in memory""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['%(namelower)s-%(version)s-bin-hadoop2.3.tgz'] +source_urls = ['http://www.apache.org/dyn/closer.cgi/spark/%(namelower)s-%(version)s'] + +java = 'Java' +javaver = '1.7.0_40' + +dependencies = [(java, javaver)] + +sanity_check_paths = { + 'files': ['bin/spark-shell'], + 'dirs': ['bin', 'lib', 'python'] +} + +modextrapaths = {'PYTHONPATH': 'python'} + +moduleclass = 'devel' -- GitLab From 404cce4fa83211c0b592fa7694fd9cf33b297006 Mon Sep 17 00:00:00 2001 From: pescobar Date: Tue, 14 Apr 2015 13:55:22 +0200 Subject: [PATCH 0958/1217] added easyconfig for newer mathematica versions --- .../m/Mathematica/Mathematica-10.0.2.eb | 14 ++++++++++++++ .../m/Mathematica/Mathematica-10.1.0.eb | 14 ++++++++++++++ 2 files changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/m/Mathematica/Mathematica-10.0.2.eb create mode 100644 easybuild/easyconfigs/m/Mathematica/Mathematica-10.1.0.eb diff --git a/easybuild/easyconfigs/m/Mathematica/Mathematica-10.0.2.eb b/easybuild/easyconfigs/m/Mathematica/Mathematica-10.0.2.eb new file mode 100644 index 0000000000..cb33bf4bb0 --- /dev/null +++ b/easybuild/easyconfigs/m/Mathematica/Mathematica-10.0.2.eb @@ -0,0 +1,14 @@ +name = 'Mathematica' +version = '10.0.2' + +homepage = 'http://www.wolfram.com/mathematica' +description = """Mathematica is a computational software program used in many scientific, engineering, mathematical +and computing fields.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['Mathematica_%s_LINUX.sh' % version] + +license_server = 'license.example.com' + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/Mathematica/Mathematica-10.1.0.eb b/easybuild/easyconfigs/m/Mathematica/Mathematica-10.1.0.eb new file mode 100644 index 0000000000..79b9255141 --- /dev/null +++ b/easybuild/easyconfigs/m/Mathematica/Mathematica-10.1.0.eb @@ -0,0 +1,14 @@ +name = 'Mathematica' +version = '10.1.0' + +homepage = 'http://www.wolfram.com/mathematica' +description = """Mathematica is a computational software program used in many scientific, engineering, mathematical +and computing fields.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['Mathematica_%s_LINUX.sh' % version] + +license_server = 'license.example.com' + +moduleclass = 'math' -- GitLab From bd259ad02ba9ce9b9e7380edd4f2f8e954190f80 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 19 Apr 2015 22:10:58 +0200 Subject: [PATCH 0959/1217] include fftw dep in Cray toolchains --- easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb | 2 ++ easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb | 2 ++ easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb | 2 ++ easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb | 2 ++ easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb | 2 ++ easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb | 2 ++ 6 files changed, 12 insertions(+) diff --git a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb index f09961bd60..45d88cae31 100644 --- a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb +++ b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb @@ -8,4 +8,6 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-cray module toolchain = {'name': 'dummy', 'version': 'dummy'} +dependencies = [('fftw', '3.3.4.0')] + moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb index ff0774c751..78c6b82ec4 100644 --- a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb +++ b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb @@ -8,4 +8,6 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-cray module toolchain = {'name': 'dummy', 'version': 'dummy'} +dependencies = [('fftw', '3.3.4.2')] + moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb index d2d1520bce..f5228016b8 100644 --- a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb @@ -8,4 +8,6 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-gnu module. toolchain = {'name': 'dummy', 'version': 'dummy'} +dependencies = [('fftw', '3.3.4.0')] + moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb index afc8c6010c..0577186f67 100644 --- a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb @@ -8,4 +8,6 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-gnu module. toolchain = {'name': 'dummy', 'version': 'dummy'} +dependencies = [('fftw', '3.3.4.2')] + moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb index 6cb4679750..9f906e92b4 100644 --- a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb +++ b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb @@ -8,4 +8,6 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-intel modul toolchain = {'name': 'dummy', 'version': 'dummy'} +dependencies = [('fftw', '3.3.4.0')] + moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb index f24f574b3f..bcd630f2e9 100644 --- a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb +++ b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb @@ -8,4 +8,6 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-intel modul toolchain = {'name': 'dummy', 'version': 'dummy'} +dependencies = [('fftw', '3.3.4.2')] + moduleclass = 'toolchain' -- GitLab From e70bb2853bdde3680953ea2038fbc6507cfd6f18 Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Mon, 20 Apr 2015 13:27:21 +0200 Subject: [PATCH 0960/1217] Remove check of bin dir since we check a file in bin anyway. --- easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb b/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb index 7f97113c7d..5c8d510430 100644 --- a/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb +++ b/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb @@ -18,7 +18,7 @@ dependencies = [(java, javaver)] sanity_check_paths = { 'files': ['bin/spark-shell'], - 'dirs': ['bin', 'lib', 'python'] + 'dirs': ['lib', 'python'] } modextrapaths = {'PYTHONPATH': 'python'} -- GitLab From 9c618b599a4aae422aa055285ee02d41f078baf9 Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Mon, 20 Apr 2015 13:57:17 +0200 Subject: [PATCH 0961/1217] Update java dep version. --- easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb b/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb index 5c8d510430..4a9f913b52 100644 --- a/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb +++ b/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb @@ -12,7 +12,7 @@ sources = ['%(namelower)s-%(version)s-bin-hadoop2.3.tgz'] source_urls = ['http://www.apache.org/dyn/closer.cgi/spark/%(namelower)s-%(version)s'] java = 'Java' -javaver = '1.7.0_40' +javaver = '1.7.0_76' dependencies = [(java, javaver)] -- GitLab From 4359a869a93472ebaceb82bd0298f2dd424bb0f6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 20 Apr 2015 14:13:00 +0200 Subject: [PATCH 0962/1217] collapse deps --- easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb b/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb index 4a9f913b52..d635db080f 100644 --- a/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb +++ b/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb @@ -11,10 +11,7 @@ toolchain = {'name': 'dummy', 'version': ''} sources = ['%(namelower)s-%(version)s-bin-hadoop2.3.tgz'] source_urls = ['http://www.apache.org/dyn/closer.cgi/spark/%(namelower)s-%(version)s'] -java = 'Java' -javaver = '1.7.0_76' - -dependencies = [(java, javaver)] +dependencies = [('Java', '1.7.0_76')] sanity_check_paths = { 'files': ['bin/spark-shell'], -- GitLab From 4bd6b21cf3ef92004b71798ced797cce9e455f1a Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Mon, 20 Apr 2015 15:09:09 +0200 Subject: [PATCH 0963/1217] Fix sources. --- easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb b/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb index 4a9f913b52..15aa2288da 100644 --- a/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb +++ b/easybuild/easyconfigs/s/Spark/Spark-1.3.0.eb @@ -9,7 +9,11 @@ description = """Spark is Hadoop MapReduce done in memory""" toolchain = {'name': 'dummy', 'version': ''} sources = ['%(namelower)s-%(version)s-bin-hadoop2.3.tgz'] -source_urls = ['http://www.apache.org/dyn/closer.cgi/spark/%(namelower)s-%(version)s'] +source_urls = [ + 'http://apache.belnet.be/%(namelower)s/%(namelower)s-%(version)s/', + 'http://www.eu.apache.org/dist/%(namelower)s/%(namelower)s-%(version)s/', + 'http://www.us.apache.org/dist/%(namelower)s/%(namelower)s-%(version)s/', +] java = 'Java' javaver = '1.7.0_76' -- GitLab From 288967c089c19a8599a71336b858fc40b79f049f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 20 Apr 2015 16:12:00 +0200 Subject: [PATCH 0964/1217] include petsc_arch spec in SLEPc 3.5.3 easyconfig --- .../easyconfigs/s/SLEPc/SLEPc-3.5.3-intel-2015a-Python-2.7.9.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/s/SLEPc/SLEPc-3.5.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/SLEPc/SLEPc-3.5.3-intel-2015a-Python-2.7.9.eb index 2253b31148..0f01678e28 100644 --- a/easybuild/easyconfigs/s/SLEPc/SLEPc-3.5.3-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/s/SLEPc/SLEPc-3.5.3-intel-2015a-Python-2.7.9.eb @@ -16,4 +16,6 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('PETSc', '3.5.3', versionsuffix)] +petsc_arch = 'arch-linux2-c-opt' + moduleclass = 'numlib' -- GitLab From 5c18bb7e6a8b9198c2ce892b271cc6c86465f916 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 20 Apr 2015 16:33:31 +0200 Subject: [PATCH 0965/1217] fix remarks --- easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2015a.eb | 2 +- easybuild/easyconfigs/n/numpy/numpy-1.8.1-mkl.patch | 2 ++ 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2015a.eb b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2015a.eb index ef2bf9ff97..cea8ae91c9 100644 --- a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2015a.eb +++ b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2015a.eb @@ -17,6 +17,6 @@ source_urls = [ patches = ['METIS_IDXTYPEWIDTH.patch'] -builddependencies = [('CMake', '3.0.0')] +builddependencies = [('CMake', '3.2.1')] moduleclass = 'math' diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.8.1-mkl.patch b/easybuild/easyconfigs/n/numpy/numpy-1.8.1-mkl.patch index 363f95c19f..0689e81b9f 100644 --- a/easybuild/easyconfigs/n/numpy/numpy-1.8.1-mkl.patch +++ b/easybuild/easyconfigs/n/numpy/numpy-1.8.1-mkl.patch @@ -1,3 +1,5 @@ +fix issues in numpy distutils pkg w.r.t. detecting BLAS/LAPACK libraries +by Kenneth Hoste (HPC-UGent) diff -ur numpy-1.8.1.orig/numpy/distutils/fcompiler/__init__.py numpy-1.8.1-2/numpy/distutils/fcompiler/__init__.py --- numpy-1.8.1.orig/numpy/distutils/fcompiler/__init__.py 2014-03-25 20:43:24.000000000 +0100 +++ numpy-1.8.1-2/numpy/distutils/fcompiler/__init__.py 2014-07-08 15:22:31.471064031 +0200 -- GitLab From 73ead9e2d22f40790446a1b2ded92a34575693b6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 20 Apr 2015 16:35:34 +0200 Subject: [PATCH 0966/1217] use %(version)s template --- easybuild/easyconfigs/m/Mathematica/Mathematica-10.0.2.eb | 2 +- easybuild/easyconfigs/m/Mathematica/Mathematica-10.1.0.eb | 2 +- easybuild/easyconfigs/m/Mathematica/Mathematica-9.0.1.eb | 2 +- easybuild/easyconfigs/p/Python/numpy-1.8.1-mkl.patch | 2 ++ 4 files changed, 5 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/m/Mathematica/Mathematica-10.0.2.eb b/easybuild/easyconfigs/m/Mathematica/Mathematica-10.0.2.eb index cb33bf4bb0..e1bdcca9da 100644 --- a/easybuild/easyconfigs/m/Mathematica/Mathematica-10.0.2.eb +++ b/easybuild/easyconfigs/m/Mathematica/Mathematica-10.0.2.eb @@ -7,7 +7,7 @@ and computing fields.""" toolchain = {'name': 'dummy', 'version': 'dummy'} -sources = ['Mathematica_%s_LINUX.sh' % version] +sources = ['Mathematica_%(version)s_LINUX.sh'] license_server = 'license.example.com' diff --git a/easybuild/easyconfigs/m/Mathematica/Mathematica-10.1.0.eb b/easybuild/easyconfigs/m/Mathematica/Mathematica-10.1.0.eb index 79b9255141..0093f6a4c2 100644 --- a/easybuild/easyconfigs/m/Mathematica/Mathematica-10.1.0.eb +++ b/easybuild/easyconfigs/m/Mathematica/Mathematica-10.1.0.eb @@ -7,7 +7,7 @@ and computing fields.""" toolchain = {'name': 'dummy', 'version': 'dummy'} -sources = ['Mathematica_%s_LINUX.sh' % version] +sources = ['Mathematica_%(version)s_LINUX.sh'] license_server = 'license.example.com' diff --git a/easybuild/easyconfigs/m/Mathematica/Mathematica-9.0.1.eb b/easybuild/easyconfigs/m/Mathematica/Mathematica-9.0.1.eb index 2d148e7a75..aafd02cf83 100644 --- a/easybuild/easyconfigs/m/Mathematica/Mathematica-9.0.1.eb +++ b/easybuild/easyconfigs/m/Mathematica/Mathematica-9.0.1.eb @@ -7,7 +7,7 @@ and computing fields.""" toolchain = {'name': 'dummy', 'version': 'dummy'} -sources = ['Mathematica_%s_LINUX.sh' % version] +sources = ['Mathematica_%(version)s_LINUX.sh'] license_server = 'license.example.com' diff --git a/easybuild/easyconfigs/p/Python/numpy-1.8.1-mkl.patch b/easybuild/easyconfigs/p/Python/numpy-1.8.1-mkl.patch index 363f95c19f..0689e81b9f 100644 --- a/easybuild/easyconfigs/p/Python/numpy-1.8.1-mkl.patch +++ b/easybuild/easyconfigs/p/Python/numpy-1.8.1-mkl.patch @@ -1,3 +1,5 @@ +fix issues in numpy distutils pkg w.r.t. detecting BLAS/LAPACK libraries +by Kenneth Hoste (HPC-UGent) diff -ur numpy-1.8.1.orig/numpy/distutils/fcompiler/__init__.py numpy-1.8.1-2/numpy/distutils/fcompiler/__init__.py --- numpy-1.8.1.orig/numpy/distutils/fcompiler/__init__.py 2014-03-25 20:43:24.000000000 +0100 +++ numpy-1.8.1-2/numpy/distutils/fcompiler/__init__.py 2014-07-08 15:22:31.471064031 +0200 -- GitLab From 4255429a0b3bd98bd547cfa009089c6a5ebe2da3 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 20 Apr 2015 17:41:51 +0200 Subject: [PATCH 0967/1217] add CMake as build dep to getdp/gmsh easyconfigs --- .../c/CMake/CMake-3.2.2-intel-2015a.eb | 22 +++++++++++++++++++ .../g/getdp/getdp-2.5.0-intel-2015a.eb | 2 ++ .../g/gmsh/gmsh-2.9.1-intel-2015a.eb | 2 ++ 3 files changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.2.2-intel-2015a.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.2.2-intel-2015a.eb b/easybuild/easyconfigs/c/CMake/CMake-3.2.2-intel-2015a.eb new file mode 100644 index 0000000000..d971d9f7a0 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.2.2-intel-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.2.2' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/getdp/getdp-2.5.0-intel-2015a.eb b/easybuild/easyconfigs/g/getdp/getdp-2.5.0-intel-2015a.eb index 1a8738bd04..32895add69 100644 --- a/easybuild/easyconfigs/g/getdp/getdp-2.5.0-intel-2015a.eb +++ b/easybuild/easyconfigs/g/getdp/getdp-2.5.0-intel-2015a.eb @@ -13,6 +13,8 @@ toolchain = {'name': 'intel', 'version': '2015a'} source_urls = ['http://geuz.org/getdp/src/'] sources = ['%(name)s-%(version)s-source.tgz'] +builddependencies = [('CMake', '3.2.2')] + dependencies = [ ('GSL', '1.16'), ('PETSc', '3.5.3', versionsuffix), diff --git a/easybuild/easyconfigs/g/gmsh/gmsh-2.9.1-intel-2015a.eb b/easybuild/easyconfigs/g/gmsh/gmsh-2.9.1-intel-2015a.eb index 00701f2eb2..40e96ab54b 100644 --- a/easybuild/easyconfigs/g/gmsh/gmsh-2.9.1-intel-2015a.eb +++ b/easybuild/easyconfigs/g/gmsh/gmsh-2.9.1-intel-2015a.eb @@ -11,6 +11,8 @@ toolchain = {'name': 'intel', 'version': '2015a'} source_urls = ['http://geuz.org/gmsh/src/'] sources = ['%(name)s-%(version)s-source.tgz'] +builddependencies = [('CMake', '3.2.2')] + separate_build_dir = True configopts = '-DENABLE_FLTK=0' -- GitLab From fcb028610093a89c404bb865e01557c8bd46243d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 20 Apr 2015 21:03:39 +0200 Subject: [PATCH 0968/1217] fix getdp easyconfig filename --- ...5.0-intel-2015a.eb => getdp-2.5.0-intel-2015a-Python-2.7.9.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/g/getdp/{getdp-2.5.0-intel-2015a.eb => getdp-2.5.0-intel-2015a-Python-2.7.9.eb} (100%) diff --git a/easybuild/easyconfigs/g/getdp/getdp-2.5.0-intel-2015a.eb b/easybuild/easyconfigs/g/getdp/getdp-2.5.0-intel-2015a-Python-2.7.9.eb similarity index 100% rename from easybuild/easyconfigs/g/getdp/getdp-2.5.0-intel-2015a.eb rename to easybuild/easyconfigs/g/getdp/getdp-2.5.0-intel-2015a-Python-2.7.9.eb -- GitLab From 7b6b3008dc49190e0bc2e48f3914661ade0a6448 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 20 Apr 2015 22:05:21 +0200 Subject: [PATCH 0969/1217] fix sanity check paths for getdp --- .../g/getdp/getdp-2.5.0-intel-2015a-Python-2.7.9.eb | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/easybuild/easyconfigs/g/getdp/getdp-2.5.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/g/getdp/getdp-2.5.0-intel-2015a-Python-2.7.9.eb index 32895add69..bf0165977f 100644 --- a/easybuild/easyconfigs/g/getdp/getdp-2.5.0-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/g/getdp/getdp-2.5.0-intel-2015a-Python-2.7.9.eb @@ -23,4 +23,9 @@ dependencies = [ separate_build_dir = True +sanity_check_paths = { + 'files': ['bin/getdp'], + 'dirs': ['share'], +} + moduleclass = 'math' -- GitLab From 0d53fd727044b2a5de8c7449d51de680e09c6f83 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 20 Apr 2015 22:53:55 +0200 Subject: [PATCH 0970/1217] add working easyconfigs for HPL, zlib, Szip with CrayGNU 5.1.29 toolchain --- .../h/HPL/HPL-2.1-CrayGNU-5.1.29.eb | 18 +++++++++++++++ .../s/Szip/Szip-2.1-CrayGNU-5.1.29.eb | 23 +++++++++++++++++++ .../z/zlib/zlib-1.2.8-CrayGNU-5.1.29.eb | 22 ++++++++++++++++++ 3 files changed, 63 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.1.29.eb create mode 100644 easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.1.29.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.1.29.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..806d976659 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.1.29.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..5a2850640d --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.1.29.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'pic': True, 'shared': True, 'dynamic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.so"] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..737b571621 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.1.29.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'pic': True, 'shared': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From cd71dfbddb7f53bf75478689ebe433bd0236b20e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 20 Apr 2015 23:02:52 +0200 Subject: [PATCH 0971/1217] add easyconfig for Libint 1.1.4 with CrayGNU 5.1.29 toolchain --- .../l/Libint/Libint-1.1.4-CrayGNU-5.1.29.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.1.29.eb diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..7d4d9128c9 --- /dev/null +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.1.29.eb @@ -0,0 +1,24 @@ +name = 'Libint' +version = '1.1.4' + +homepage = 'https://sourceforge.net/p/libint/' +description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body + matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'opt': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') + +configopts = "--enable-deriv --enable-r12" + +sanity_check_paths = { + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], + 'dirs':[], +} + +moduleclass = 'chem' -- GitLab From 485182e90af909ae96d86bdf5dbfcff5b49c88bb Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 21 Apr 2015 16:11:51 +0200 Subject: [PATCH 0972/1217] specify fftw dep in Cray toolchain easyconfigs as an external dep --- easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb | 2 +- easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb | 2 +- easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb | 2 +- easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb | 2 +- easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb | 2 +- easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb index 45d88cae31..f5df8a066a 100644 --- a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb +++ b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb @@ -8,6 +8,6 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-cray module toolchain = {'name': 'dummy', 'version': 'dummy'} -dependencies = [('fftw', '3.3.4.0')] +dependencies = [('fftw/3.3.4.0', EXTERNAL_MODULE)] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb index 78c6b82ec4..524d8e18e6 100644 --- a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb +++ b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb @@ -8,6 +8,6 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-cray module toolchain = {'name': 'dummy', 'version': 'dummy'} -dependencies = [('fftw', '3.3.4.2')] +dependencies = [('fftw/3.3.4.2', EXTERNAL_MODULE)] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb index f5228016b8..cf8d95ff05 100644 --- a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb @@ -8,6 +8,6 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-gnu module. toolchain = {'name': 'dummy', 'version': 'dummy'} -dependencies = [('fftw', '3.3.4.0')] +dependencies = [('fftw/3.3.4.0', EXTERNAL_MODULE)] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb index 0577186f67..b811ad7ed5 100644 --- a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb @@ -8,6 +8,6 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-gnu module. toolchain = {'name': 'dummy', 'version': 'dummy'} -dependencies = [('fftw', '3.3.4.2')] +dependencies = [('fftw/3.3.4.2', EXTERNAL_MODULE)] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb index 9f906e92b4..8e4b5fe50e 100644 --- a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb +++ b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb @@ -8,6 +8,6 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-intel modul toolchain = {'name': 'dummy', 'version': 'dummy'} -dependencies = [('fftw', '3.3.4.0')] +dependencies = [('fftw/3.3.4.0', EXTERNAL_MODULE)] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb index bcd630f2e9..b460d5e453 100644 --- a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb +++ b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb @@ -8,6 +8,6 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-intel modul toolchain = {'name': 'dummy', 'version': 'dummy'} -dependencies = [('fftw', '3.3.4.2')] +dependencies = [('fftw/3.3.4.2', EXTERNAL_MODULE)] moduleclass = 'toolchain' -- GitLab From 8b46e6671a2b1d719b649e3df568125326d7da7a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 21 Apr 2015 19:51:06 +0200 Subject: [PATCH 0973/1217] {tools}[GCC/4.9.2] parallel 20150322 --- .../p/parallel/parallel-20150322-GCC-4.9.2.eb | 23 +++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 easybuild/easyconfigs/p/parallel/parallel-20150322-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/p/parallel/parallel-20150322-GCC-4.9.2.eb b/easybuild/easyconfigs/p/parallel/parallel-20150322-GCC-4.9.2.eb new file mode 100644 index 0000000000..5819c52290 --- /dev/null +++ b/easybuild/easyconfigs/p/parallel/parallel-20150322-GCC-4.9.2.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'parallel' +version = '20150322' + +homepage = 'http://savannah.gnu.org/projects/parallel/' +description = """parallel: Build and execute shell commands in parallel""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/parallel'] + +dependencies = [ + ('Perl', '5.20.1', '-bare'), +] + +sanity_check_paths = { + 'files': ['bin/parallel'], + 'dirs': [] +} + +moduleclass = 'tools' -- GitLab From 3430ac8b491a4dbf2cda7bb17f9fe397b8cbbbb0 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 21 Apr 2015 19:54:02 +0200 Subject: [PATCH 0974/1217] bump Perl version in parallel dep to latest --- .../p/Perl/Perl-5.20.2-GCC-4.9.2-bare.eb | 19 +++++++++++++++++++ .../p/parallel/parallel-20150322-GCC-4.9.2.eb | 2 +- 2 files changed, 20 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/p/Perl/Perl-5.20.2-GCC-4.9.2-bare.eb diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.2-GCC-4.9.2-bare.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.2-GCC-4.9.2-bare.eb new file mode 100644 index 0000000000..a79c30c3b2 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.2-GCC-4.9.2-bare.eb @@ -0,0 +1,19 @@ +name = 'Perl' +version = '5.20.2' +versionsuffix = '-bare' + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +# bare, no extensions +exts_list = [] + +runtest = 'test' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/parallel/parallel-20150322-GCC-4.9.2.eb b/easybuild/easyconfigs/p/parallel/parallel-20150322-GCC-4.9.2.eb index 5819c52290..d8b12a2b08 100644 --- a/easybuild/easyconfigs/p/parallel/parallel-20150322-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/p/parallel/parallel-20150322-GCC-4.9.2.eb @@ -12,7 +12,7 @@ sources = [SOURCELOWER_TAR_BZ2] source_urls = ['http://ftp.gnu.org/gnu/parallel'] dependencies = [ - ('Perl', '5.20.1', '-bare'), + ('Perl', '5.20.2', '-bare'), ] sanity_check_paths = { -- GitLab From 2528867b9d244f4bab88d7d73c983e885b4498b8 Mon Sep 17 00:00:00 2001 From: Petar Forai Date: Wed, 22 Apr 2015 01:48:23 +0200 Subject: [PATCH 0975/1217] Added initial GROMACS 4.6.5 support for CrayGNU. Need to add -mt and -hybrid suffixes. --- .../g/GROMACS/GROMACS-4.6.5-CrayGNU-5.1.29.eb | 36 +++++++++++++++++++ 1 file changed, 36 insertions(+) create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-CrayGNU-5.1.29.eb diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..e8c3fd1883 --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-CrayGNU-5.1.29.eb @@ -0,0 +1,36 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# George Tsouloupas , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html +## +name = 'GROMACS' +version = '4.6.5' + +homepage = 'http://www.gromacs.org' +description = """GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} + +# eg. ftp://ftp.gromacs.org/pub/gromacs/gromacs-4.6.tar.gz +source_urls = [ + 'ftp://ftp.gromacs.org/pub/gromacs/', # GROMACS sources + 'http://gerrit.gromacs.org/download/', # regression tests sources +] +sources = [ + SOURCELOWER_TAR_GZ, + 'regressiontests-%(version)s.tar.gz', +] + +builddependencies = [('CMake', '3.1.3', '', True)] + +runtest = False + +moduleclass = 'bio' -- GitLab From 29f05410639f3894651b8075469659144a2e6e8a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 22 Apr 2015 09:39:33 +0200 Subject: [PATCH 0976/1217] add easyconfig for GROMACS + ncurses/CMake deps with CrayGNU 5.1.29 --- .../c/CMake/CMake-3.2.2-CrayGNU-5.1.29.eb | 23 ++++++++++++ .../GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb | 37 +++++++++++++++++++ .../n/ncurses/ncurses-5.9-CrayGNU-5.1.29.eb | 22 +++++++++++ 3 files changed, 82 insertions(+) create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.1.29.eb create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.1.29.eb diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..68df962efa --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.1.29.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.2.2' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'dynamic': True} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb new file mode 100644 index 0000000000..c7618bc1f3 --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb @@ -0,0 +1,37 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# George Tsouloupas , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html +## +name = 'GROMACS' +version = '4.6.7' +versionsuffix = '-mpi' + +homepage = 'http://www.gromacs.org' +description = """GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} + +# eg. ftp://ftp.gromacs.org/pub/gromacs/gromacs-4.6.tar.gz +source_urls = [ + 'ftp://ftp.gromacs.org/pub/gromacs/', # GROMACS sources + 'http://gerrit.gromacs.org/download/', # regression tests sources +] +sources = [ + SOURCELOWER_TAR_GZ, + 'regressiontests-%(version)s.tar.gz', +] + +builddependencies = [('CMake', '3.2.2')] + +runtest = False + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..64defc00e8 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.1.29.eb @@ -0,0 +1,22 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'pic': True, 'shared': True, 'dynamic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +configopts = [ + # default build, no custom configure options + '', + # the UTF-8 enabled version (ncursesw) + '--enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' +] + +moduleclass = 'devel' -- GitLab From 511854dff8266600d50b2d75a13e1ef055197ed4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 22 Apr 2015 09:40:42 +0200 Subject: [PATCH 0977/1217] remove GROMACS 4.6.5 with CrayGNU --- .../g/GROMACS/GROMACS-4.6.5-CrayGNU-5.1.29.eb | 36 ------------------- 1 file changed, 36 deletions(-) delete mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-CrayGNU-5.1.29.eb diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-CrayGNU-5.1.29.eb deleted file mode 100644 index e8c3fd1883..0000000000 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.5-CrayGNU-5.1.29.eb +++ /dev/null @@ -1,36 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University -# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ -# George Tsouloupas , Kenneth Hoste -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html -## -name = 'GROMACS' -version = '4.6.5' - -homepage = 'http://www.gromacs.org' -description = """GROMACS is a versatile package to perform molecular dynamics, - i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" - -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} - -# eg. ftp://ftp.gromacs.org/pub/gromacs/gromacs-4.6.tar.gz -source_urls = [ - 'ftp://ftp.gromacs.org/pub/gromacs/', # GROMACS sources - 'http://gerrit.gromacs.org/download/', # regression tests sources -] -sources = [ - SOURCELOWER_TAR_GZ, - 'regressiontests-%(version)s.tar.gz', -] - -builddependencies = [('CMake', '3.1.3', '', True)] - -runtest = False - -moduleclass = 'bio' -- GitLab From 3adbc1318e829bef3ba5a8a2fe40c01deead9fd3 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lum=C3=ADr=20Jasiok?= Date: Wed, 22 Apr 2015 09:47:17 +0200 Subject: [PATCH 0978/1217] Toolchain intel-2014.06 including HPL-2.1 --- .../h/HPL/HPL-2.1-intel-2014.06.eb | 18 +++++++++++++++ .../i/iimpi/iimpi-5.5.0-GCC-4.8.3.eb | 21 +++++++++++++++++ .../imkl-11.0.5.192-iimpi-5.5.0-GCC-4.8.3.eb | 22 ++++++++++++++++++ ...4.1.1.036-iccifort-2013.5.192-GCC-4.8.3.eb | 19 +++++++++++++++ .../easyconfigs/i/intel/intel-2014.06.eb | 23 +++++++++++++++++++ 5 files changed, 103 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.06.eb create mode 100644 easybuild/easyconfigs/i/iimpi/iimpi-5.5.0-GCC-4.8.3.eb create mode 100644 easybuild/easyconfigs/i/imkl/imkl-11.0.5.192-iimpi-5.5.0-GCC-4.8.3.eb create mode 100644 easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192-GCC-4.8.3.eb create mode 100644 easybuild/easyconfigs/i/intel/intel-2014.06.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.06.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.06.eb new file mode 100644 index 0000000000..38c3e337e3 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2014.06.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'intel', 'version': '2014.06'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-5.5.0-GCC-4.8.3.eb b/easybuild/easyconfigs/i/iimpi/iimpi-5.5.0-GCC-4.8.3.eb new file mode 100644 index 0000000000..6927105428 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-5.5.0-GCC-4.8.3.eb @@ -0,0 +1,21 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '5.5.0' +versionsuffix = '-GCC-4.8.3' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '5.192' +compver = '2013.%s' % suff + +dependencies = [ # version/released + ('icc', compver, versionsuffix), # 28 Apr 2014 + ('ifort', compver, versionsuffix), # 28 Apr 2014 + ('impi', '4.1.1.036', '', ('iccifort', '%s%s' % (compver, versionsuffix))), # 06 Mar 2014 +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.0.5.192-iimpi-5.5.0-GCC-4.8.3.eb b/easybuild/easyconfigs/i/imkl/imkl-11.0.5.192-iimpi-5.5.0-GCC-4.8.3.eb new file mode 100644 index 0000000000..e04b151136 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.0.5.192-iimpi-5.5.0-GCC-4.8.3.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.0.5.192' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '5.5.0-GCC-4.8.3'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +interfaces = True + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192-GCC-4.8.3.eb b/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192-GCC-4.8.3.eb new file mode 100644 index 0000000000..00ee030d34 --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192-GCC-4.8.3.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '4.1.1.036' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2013.5.192-GCC-4.8.3'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/intel/intel-2014.06.eb b/easybuild/easyconfigs/i/intel/intel-2014.06.eb new file mode 100644 index 0000000000..57c2903c57 --- /dev/null +++ b/easybuild/easyconfigs/i/intel/intel-2014.06.eb @@ -0,0 +1,23 @@ +easyblock = "Toolchain" + +name = 'intel' +version = '2014.06' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '5.192' +compver = '2013.%s' % suff + +gccsuff = '-GCC-4.8.3' + +dependencies = [ + ('icc', compver, gccsuff), + ('ifort', compver, gccsuff), + ('impi', '4.1.1.036', '', ('iccifort', '%s%s' % (compver, gccsuff))), + ('imkl', '11.0.5.192', '', ('iimpi', '5.5.0%s' % gccsuff)), +] + +moduleclass = 'toolchain' -- GitLab From cf377e97fa10de64eb15963e45e25c8ceaae4888 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 22 Apr 2015 12:07:43 +0200 Subject: [PATCH 0979/1217] include PrgEnv and cray-libsci deps in CrayGNU toolchains --- easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb | 6 +++++- easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb | 6 +++++- 2 files changed, 10 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb index cf8d95ff05..9f424cdc02 100644 --- a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb @@ -8,6 +8,10 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-gnu module. toolchain = {'name': 'dummy', 'version': 'dummy'} -dependencies = [('fftw/3.3.4.0', EXTERNAL_MODULE)] +dependencies = [ + ('PrgEnv-gnu/' + version, EXTERNAL_MODULE), + ('cray-libsci/13.0.1', EXTERNAL_MODULE), # loaded by PrgEnv-gnu + ('fftw/3.3.4.0', EXTERNAL_MODULE), +] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb index b811ad7ed5..37804fbb5c 100644 --- a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb @@ -8,6 +8,10 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-gnu module. toolchain = {'name': 'dummy', 'version': 'dummy'} -dependencies = [('fftw/3.3.4.2', EXTERNAL_MODULE)] +dependencies = [ + ('PrgEnv-gnu/' + version, EXTERNAL_MODULE), + ('cray-libsci/13.0.3', EXTERNAL_MODULE), # loaded by PrgEnv-gnu + ('fftw/3.3.4.2', EXTERNAL_MODULE), +] moduleclass = 'toolchain' -- GitLab From ba093636f1a248850f323619b8988204dd966172 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 22 Apr 2015 14:14:35 +0200 Subject: [PATCH 0980/1217] enable pic option in expat easyconfigs --- easybuild/easyconfigs/e/expat/expat-2.1.0-GCC-4.9.2.eb | 1 + easybuild/easyconfigs/e/expat/expat-2.1.0-cgmpolf-1.1.6.eb | 1 + easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.1.12rc1.eb | 1 + easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.2.7.eb | 1 + easybuild/easyconfigs/e/expat/expat-2.1.0-cgoolf-1.1.7.eb | 1 + easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2014b.eb | 1 + easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2015a.eb | 1 + easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12.eb | 1 + easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12rc1.eb | 1 + easybuild/easyconfigs/e/expat/expat-2.1.0-goalf-1.1.0-no-OFED.eb | 1 + easybuild/easyconfigs/e/expat/expat-2.1.0-goolf-1.4.10.eb | 1 + easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-3.2.2.u3.eb | 1 + easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.0.6.eb | 1 + easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.1.13.eb | 1 + easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.3.0.eb | 1 + easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.5.0.eb | 1 + easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb | 1 + easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2015a.eb | 1 + 18 files changed, 18 insertions(+) diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-GCC-4.9.2.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-GCC-4.9.2.eb index e10b56409e..5ec94cc902 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-GCC-4.9.2.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmpolf-1.1.6.eb index 32e37ffc4e..ff49fa9059 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmpolf-1.1.6.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'cgmpolf', 'version': '1.1.6'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.1.12rc1.eb index a5482a0de8..e94cc361d0 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.1.12rc1.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'cgmvolf', 'version': '1.1.12rc1'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.2.7.eb index 77192999ec..faee47738e 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgmvolf-1.2.7.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'cgmvolf', 'version': '1.2.7'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgoolf-1.1.7.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgoolf-1.1.7.eb index 7548d8a264..292f27fff3 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-cgoolf-1.1.7.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'cgoolf', 'version': '1.1.7'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2014b.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2014b.eb index 35e32ef7da..e68977279b 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2014b.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2014b.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'foss', 'version': '2014b'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2015a.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2015a.eb index 1381b2b8cd..600e38e8b5 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2015a.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2015a.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12.eb index 1df1944fe7..5bf2380173 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'gmvolf', 'version': '1.7.12'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12rc1.eb index 23118879c5..1e273d6bd7 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-gmvolf-1.7.12rc1.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'gmvolf', 'version': '1.7.12rc1'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-goalf-1.1.0-no-OFED.eb index 207aea5fd5..7fee445ae4 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-goalf-1.1.0-no-OFED.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-goolf-1.4.10.eb index ccfb1c69db..c409db262d 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-goolf-1.4.10.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-3.2.2.u3.eb index 3d951c24c9..988d22cea6 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-3.2.2.u3.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.0.6.eb index 6fe54d636d..40d2dd346f 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.0.6.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'ictce', 'version': '4.0.6'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.1.13.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.1.13.eb index f59fe3f2c0..659d23c4d0 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-4.1.13.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'ictce', 'version': '4.1.13'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.3.0.eb index 7717261400..c97465c9f1 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.3.0.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'ictce', 'version': '5.3.0'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.5.0.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.5.0.eb index 45acf6dd3e..7960b1c2df 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-ictce-5.5.0.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb index f76c746c5e..1c0523995a 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2014b.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'intel', 'version': '2014b'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2015a.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2015a.eb index 0eb1188648..084ab12246 100644 --- a/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2015a.eb +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2015a.eb @@ -8,6 +8,7 @@ description = """Expat is an XML parser library written in C. It is a stream-ori registers handlers for things the parser might find in the XML document (like start tags)""" toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [SOURCEFORGE_SOURCE] -- GitLab From 05e3d12dda5b6d5862b21144d11e0af3ee50bc9a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 22 Apr 2015 17:47:55 +0200 Subject: [PATCH 0981/1217] add easyconfigs for CP2K + deps with CrayGNU/5.1.29 --- .../b/Bison/Bison-3.0.2-CrayGNU-5.1.29.eb | 22 +++++++++++ .../c/CP2K/CP2K-2.6.0-CrayGNU-5.1.29.eb | 38 +++++++++++++++++++ .../f/flex/flex-2.5.39-CrayGNU-5.1.29.eb | 14 +++++++ .../l/libxc/libxc-2.2.1-CrayGNU-5.1.29.eb | 32 ++++++++++++++++ .../m/M4/M4-1.4.17-CrayGNU-5.1.29.eb | 23 +++++++++++ 5 files changed, 129 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.1.29.eb create mode 100644 easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.1.29.eb create mode 100644 easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.1.29.eb create mode 100644 easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.1.29.eb create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.1.29.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..96873ab500 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.1.29.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.2' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..e1f9bdb729 --- /dev/null +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.1.29.eb @@ -0,0 +1,38 @@ +name = 'CP2K' +version = '2.6.0' + +homepage = 'http://www.cp2k.org/' +description = """CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular + simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different + methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and + classical pair and many-body potentials. """ + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [SOURCEFORGE_SOURCE] + +patches = [ + 'CP2K-2.6.0-ifort-compiler-bug-fix.patch', + 'CP2K-2.4.0-fix_compile_date_lastsvn.patch', +] + +dependencies = [ + ('Libint', '1.1.4'), + ('libxc', '2.2.1'), +] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.2'), +] + +# don't use parallel make, results in compilation failure +# because Fortran module files aren't created before they are needed +parallel = 1 + +# regression test reports failures +ignore_regtest_fails = True + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..a6d2ced89c --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.1.29.eb @@ -0,0 +1,14 @@ +name = 'flex' +version = '2.5.39' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..548d650cde --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.1.29.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = '2.2.1' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'opt': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS"' + +# From the libxc mailing list +# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect +# a fully working testsuite soon (unless someone wants to volunteer to do +# it, of course ) In the meantime, unless the majority of the tests +# fail, your build should be fine. +#runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc.a'], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..de4b325756 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.1.29.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From b99801a68b103fa5037f4a15aaad321dd0c2bd0a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 22 Apr 2015 17:57:56 +0200 Subject: [PATCH 0982/1217] fix sources/source_urls in Octave easyconfig --- easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb index 131eedc724..f4320d6460 100644 --- a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb +++ b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb @@ -8,8 +8,8 @@ description = """GNU Octave is a high-level interpreted language, primarily inte toolchain = {'name': 'foss', 'version': '2015a'} -sources = [GNU_SOURCE] -source_urls = ['http://ftpmirror.gnu.org/octave/'] +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] configopts = '--with-blas="${LIBBLAS}"' -- GitLab From 4e6b0a299a1645227e03f8f7520846553a1465dc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 22 Apr 2015 20:54:44 +0200 Subject: [PATCH 0983/1217] {math}[intel/2015a] Octave 3.8.2 --- .../o/Octave/Octave-3.8.2-foss-2015a.eb | 4 +-- .../o/Octave/Octave-3.8.2-intel-2015a.eb | 29 +++++++++++++++++ .../o/Octave/Octave-3.8.2_intel.patch | 32 +++++++++++++++++++ 3 files changed, 63 insertions(+), 2 deletions(-) create mode 100644 easybuild/easyconfigs/o/Octave/Octave-3.8.2-intel-2015a.eb create mode 100644 easybuild/easyconfigs/o/Octave/Octave-3.8.2_intel.patch diff --git a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb index f4320d6460..da90d7cb9f 100644 --- a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb +++ b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb @@ -11,14 +11,14 @@ toolchain = {'name': 'foss', 'version': '2015a'} source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] -configopts = '--with-blas="${LIBBLAS}"' - dependencies = [ ('PCRE', '8.36'), ('ncurses', '5.9'), ('libreadline', '6.3'), ] +configopts = '--with-blas="${LIBBLAS}"' + sanity_check_paths = { 'files': ['bin/octave'], 'dirs': [] diff --git a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-intel-2015a.eb b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-intel-2015a.eb new file mode 100644 index 0000000000..a7b0eeec4a --- /dev/null +++ b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-intel-2015a.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'Octave' +version = '3.8.2' + +homepage = 'http://www.gnu.org/software/octave/' +description = """GNU Octave is a high-level interpreted language, primarily intended for numerical computations.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['Octave-%(version)s_intel.patch'] + +dependencies = [ + ('PCRE', '8.36'), + ('ncurses', '5.9'), + ('libreadline', '6.3'), +] + +configopts = '--with-blas="${LIBBLAS}"' + +sanity_check_paths = { + 'files': ['bin/octave'], + 'dirs': [] +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/o/Octave/Octave-3.8.2_intel.patch b/easybuild/easyconfigs/o/Octave/Octave-3.8.2_intel.patch new file mode 100644 index 0000000000..3bc21ba24d --- /dev/null +++ b/easybuild/easyconfigs/o/Octave/Octave-3.8.2_intel.patch @@ -0,0 +1,32 @@ +avoid "declaration is incompatible with previous" style error message +cfr. http://lists.gnu.org/archive/html/help-octave/2011-10/msg00438.html +by Kenneth Hoste (HPC-UGent) +--- octave-3.8.2/libgnu/stdio.in.h.orig 2015-04-22 20:12:39.436847845 +0200 ++++ octave-3.8.2/libgnu/stdio.in.h 2015-04-22 20:15:20.800889451 +0200 +@@ -633,7 +633,7 @@ + _GL_FUNCDECL_RPL (getchar, int, (void)); + _GL_CXXALIAS_RPL (getchar, int, (void)); + # else +-_GL_CXXALIAS_SYS (getchar, int, (void)); ++//_GL_CXXALIAS_SYS (getchar, int, (void)); + # endif + _GL_CXXALIASWARN (getchar); + #endif +@@ -907,7 +907,7 @@ + _GL_FUNCDECL_RPL (putchar, int, (int c)); + _GL_CXXALIAS_RPL (putchar, int, (int c)); + # else +-_GL_CXXALIAS_SYS (putchar, int, (int c)); ++//_GL_CXXALIAS_SYS (putchar, int, (int c)); + # endif + _GL_CXXALIASWARN (putchar); + #endif +@@ -1261,7 +1261,7 @@ + /* Need to cast, because on Solaris, the second parameter is + __va_list args + and GCC's fixincludes did not change this to __gnuc_va_list. */ +-_GL_CXXALIAS_SYS_CAST (vprintf, int, (const char *format, va_list args)); ++//_GL_CXXALIAS_SYS_CAST (vprintf, int, (const char *format, va_list args)); + # endif + _GL_CXXALIASWARN (vprintf); + #endif -- GitLab From 9281c89c26232fbe8b18dcc1d2366de0aaaffd48 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 22 Apr 2015 21:34:22 +0200 Subject: [PATCH 0984/1217] fix patch for building Octave with Intel compilers, add sanity check command --- .../o/Octave/Octave-3.8.2-foss-2015a.eb | 2 + .../o/Octave/Octave-3.8.2-intel-2015a.eb | 2 + .../o/Octave/Octave-3.8.2_intel.patch | 55 +++++++++---------- 3 files changed, 29 insertions(+), 30 deletions(-) diff --git a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb index da90d7cb9f..2bf046bbd9 100644 --- a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb +++ b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb @@ -24,4 +24,6 @@ sanity_check_paths = { 'dirs': [] } +sanity_check_commands = [('octave', '--eval "1+2"')] + moduleclass = 'math' diff --git a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-intel-2015a.eb b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-intel-2015a.eb index a7b0eeec4a..a4fb263cdc 100644 --- a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-intel-2015a.eb +++ b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-intel-2015a.eb @@ -26,4 +26,6 @@ sanity_check_paths = { 'dirs': [] } +sanity_check_commands = [('octave', '--eval "1+2"')] + moduleclass = 'math' diff --git a/easybuild/easyconfigs/o/Octave/Octave-3.8.2_intel.patch b/easybuild/easyconfigs/o/Octave/Octave-3.8.2_intel.patch index 3bc21ba24d..20560be7e6 100644 --- a/easybuild/easyconfigs/o/Octave/Octave-3.8.2_intel.patch +++ b/easybuild/easyconfigs/o/Octave/Octave-3.8.2_intel.patch @@ -1,32 +1,27 @@ -avoid "declaration is incompatible with previous" style error message -cfr. http://lists.gnu.org/archive/html/help-octave/2011-10/msg00438.html -by Kenneth Hoste (HPC-UGent) ---- octave-3.8.2/libgnu/stdio.in.h.orig 2015-04-22 20:12:39.436847845 +0200 -+++ octave-3.8.2/libgnu/stdio.in.h 2015-04-22 20:15:20.800889451 +0200 -@@ -633,7 +633,7 @@ - _GL_FUNCDECL_RPL (getchar, int, (void)); - _GL_CXXALIAS_RPL (getchar, int, (void)); - # else --_GL_CXXALIAS_SYS (getchar, int, (void)); -+//_GL_CXXALIAS_SYS (getchar, int, (void)); - # endif - _GL_CXXALIASWARN (getchar); +fix build issue with Intel compilers that manifests itself as: +../../libgnu/stdio.h(948): error: declaration is incompatible with previous "getchar" (declared at line 542 of "/usr/include/stdio.h") + _GL_CXXALIAS_SYS (getchar, int, (void)); + ^ +see http://octave.1599824.n4.nabble.com/Build-issues-with-libgnu-tt4666148.html#a4666416 +patch available via https://savannah.gnu.org/bugs/index.php?43171 +--- octave-3.8.2/libgnu/fcntl.in.h ++++ octave-3.8.2/libgnu//fcntl.in.h +@@ -34,7 +34,7 @@ + extern "C" { ... } block, which leads to errors in C++ mode with the + overridden from gnulib. These errors are known to be gone + with g++ version >= 4.3. */ +-#if !(defined __GLIBC__ || defined __UCLIBC__) || (defined __cplusplus && defined GNULIB_NAMESPACE && !(__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 3))) ++#if !(defined __GLIBC__ || defined __UCLIBC__) || (defined __cplusplus && defined GNULIB_NAMESPACE && (defined __ICC || !(__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 3)))) + # include #endif -@@ -907,7 +907,7 @@ - _GL_FUNCDECL_RPL (putchar, int, (int c)); - _GL_CXXALIAS_RPL (putchar, int, (int c)); - # else --_GL_CXXALIAS_SYS (putchar, int, (int c)); -+//_GL_CXXALIAS_SYS (putchar, int, (int c)); - # endif - _GL_CXXALIASWARN (putchar); - #endif -@@ -1261,7 +1261,7 @@ - /* Need to cast, because on Solaris, the second parameter is - __va_list args - and GCC's fixincludes did not change this to __gnuc_va_list. */ --_GL_CXXALIAS_SYS_CAST (vprintf, int, (const char *format, va_list args)); -+//_GL_CXXALIAS_SYS_CAST (vprintf, int, (const char *format, va_list args)); - # endif - _GL_CXXALIASWARN (vprintf); + #@INCLUDE_NEXT@ @NEXT_FCNTL_H@ +@@ -53,7 +53,7 @@ + extern "C" { ... } block, which leads to errors in C++ mode with the + overridden from gnulib. These errors are known to be gone + with g++ version >= 4.3. */ +-#if !(defined __GLIBC__ || defined __UCLIBC__) || (defined __cplusplus && defined GNULIB_NAMESPACE && !(__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 3))) ++#if !(defined __GLIBC__ || defined __UCLIBC__) || (defined __cplusplus && defined GNULIB_NAMESPACE && (defined __ICC || !(__GNUC__ > 4 || (__GNUC__ == 4 && __GNUC_MINOR__ >= 3)))) + # include #endif + /* The include_next requires a split double-inclusion guard. */ + -- GitLab From 5e877df0dacccfa40d615e938848de522483e927 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 22 Apr 2015 21:48:53 +0200 Subject: [PATCH 0985/1217] complete patch for building Octave with Intel --- .../o/Octave/Octave-3.8.2_intel.patch | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/easybuild/easyconfigs/o/Octave/Octave-3.8.2_intel.patch b/easybuild/easyconfigs/o/Octave/Octave-3.8.2_intel.patch index 20560be7e6..ec623d4749 100644 --- a/easybuild/easyconfigs/o/Octave/Octave-3.8.2_intel.patch +++ b/easybuild/easyconfigs/o/Octave/Octave-3.8.2_intel.patch @@ -25,3 +25,27 @@ patch available via https://savannah.gnu.org/bugs/index.php?43171 #endif /* The include_next requires a split double-inclusion guard. */ +--- octave-3.8.2/liboctave/cruft/misc/quit.h.orig 2015-04-22 21:47:08.614133593 +0200 ++++ octave-3.8.2/liboctave/cruft/misc/quit.h 2015-04-22 21:47:24.584562436 +0200 +@@ -23,16 +23,16 @@ + #if !defined (octave_quit_h) + #define octave_quit_h 1 + +-#ifdef __cplusplus +-#include +-extern "C" { +-#endif +- + #include + + #include + #include + ++#ifdef __cplusplus ++#include ++extern "C" { ++#endif ++ + #if defined (__WIN32__) && ! defined (_POSIX_VERSION) + + #define WIN32_LEAN_AND_MEAN -- GitLab From 3ad51d6e3c3eb177dd97e9f202bd822bc63907ae Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 22 Apr 2015 22:26:02 +0200 Subject: [PATCH 0986/1217] add easyconfigs for Python/numpy/scipy with CrayGNU 5.1.29 --- ...numpy-1.9.2-CrayGNU-5.1.29-Python-2.7.9.eb | 26 +++++ .../Python-2.7.9-CrayGNU-5.1.29-bare.eb | 31 +++++ .../p/Python/Python-2.7.9-CrayGNU-5.1.29.eb | 107 ++++++++++++++++++ ...cipy-0.15.1-CrayGNU-5.1.29-Python-2.7.9.eb | 19 ++++ 4 files changed, 183 insertions(+) create mode 100644 easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.1.29-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29-bare.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29.eb create mode 100644 easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.1.29-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.1.29-Python-2.7.9.eb b/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.1.29-Python-2.7.9.eb new file mode 100644 index 0000000000..49b27458ee --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.1.29-Python-2.7.9.eb @@ -0,0 +1,26 @@ +name = 'numpy' +version = '1.9.2' + +homepage = 'http://www.numpy.org' +description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: + a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran + code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, + NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be + defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCE_TAR_GZ] + +patches = ['numpy-1.8.0-mkl.patch'] + +python = 'Python' +pyver = '2.7.9' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29-bare.eb new file mode 100644 index 0000000000..2ec3cb1dc8 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29-bare.eb @@ -0,0 +1,31 @@ +name = 'Python' +version = '2.7.9' +versionsuffix = '-bare' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'pic': True, 'opt': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# bare installation: no extensions included +exts_list = [] + +buildopts = 'LINKCC="$CC -dynamic"' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..4ef1c682d1 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29.eb @@ -0,0 +1,107 @@ +name = 'Python' +version = '2.7.9' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.1' +scipyversion = '0.14.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +buildopts = 'LINKCC="$CC -dynamic"' + +# order is important! +# package versions updated Jan 19th 2015 +exts_list = [ + ('setuptools', '11.3.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '6.0.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.4', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-1.8.0-mkl.patch', # % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.21.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.0', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.15.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.13', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.1.29-Python-2.7.9.eb b/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.1.29-Python-2.7.9.eb new file mode 100644 index 0000000000..d6c03f828c --- /dev/null +++ b/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.1.29-Python-2.7.9.eb @@ -0,0 +1,19 @@ +name = 'scipy' +version = '0.15.1' +versionsuffix = '-Python-2.7.9' + +homepage = 'http://www.scipy.org' +description = """SciPy is a collection of mathematical algorithms and convenience + functions built on the Numpy extension for Python.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'pic': True} + +source_urls = [('http://sourceforge.net/projects/scipy/files/scipy/%(version)s', 'download')] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('numpy', '1.9.2', versionsuffix), +] + +moduleclass = 'math' -- GitLab From fd0f971d2ce6b217255a2a757d738f18d6e50cda Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 22 Apr 2015 23:29:04 +0200 Subject: [PATCH 0987/1217] add missing bzip2 easyconfig with CrayGNU 5.1.29 --- .../b/bzip2/bzip2-1.0.6-CrayGNU-5.1.29.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.1.29.eb diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..a04591dede --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.1.29.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' -- GitLab From c0f36ba76e8fce6cb7239b7dc0b2aa7f280c5cd9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 22 Apr 2015 23:29:41 +0200 Subject: [PATCH 0988/1217] add missing libreadline easyconfig with CrayGNU 5.1.29 --- .../libreadline-6.3-CrayGNU-5.1.29.eb | 27 +++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.1.29.eb diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..8b8b71eae5 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.1.29.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' -- GitLab From 2d387c0a2898473c987ad093100f56dcdf4c36a0 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Lum=C3=ADr=20Jasiok?= Date: Thu, 23 Apr 2015 09:37:26 +0200 Subject: [PATCH 0989/1217] OpenCV-2.4.9-intel-2014.06 anddependencies --- .../a/ant/ant-1.9.3-Java-1.7.0_79.eb | 26 +++++ .../b/bzip2/bzip2-1.0.6-intel-2014.06.eb | 15 +++ .../c/CMake/CMake-3.0.0-intel-2014.06.eb | 22 +++++ .../f/ffmpeg/ffmpeg-2.4-intel-2014.06.eb | 28 ++++++ .../g/GLib/GLib-2.40.0-intel-2014.06.eb | 21 +++++ .../g/gettext/gettext-0.19.2-intel-2014.06.eb | 18 ++++ .../j/JUnit/JUnit-4.11-Java-1.7.0_79.eb | 25 +++++ .../j/JasPer/JasPer-1.900.1-intel-2014.06.eb | 21 +++++ easybuild/easyconfigs/j/Java/Java-1.7.0_79.eb | 15 +++ .../l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb | 19 ++++ .../l/libffi/libffi-3.1-intel-2014.06.eb | 23 +++++ .../libjpeg-turbo-1.3.1-intel-2014.06.eb | 24 +++++ .../l/libpng/libpng-1.6.12-intel-2014.06.eb | 19 ++++ .../libreadline-6.3-intel-2014.06.eb | 27 ++++++ .../n/NASM/NASM-2.11.05-intel-2014.06.eb | 19 ++++ .../n/ncurses/ncurses-5.9-intel-2014.06.eb | 15 +++ .../o/OpenCV/OpenCV-2.4.9-intel-2014.06.eb | 76 +++++++++++++++ .../p/Python/Python-2.7.8-intel-2014.06.eb | 94 +++++++++++++++++++ .../z/zlib/zlib-1.2.8-intel-2014.06.eb | 24 +++++ 19 files changed, 531 insertions(+) create mode 100644 easybuild/easyconfigs/a/ant/ant-1.9.3-Java-1.7.0_79.eb create mode 100644 easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-intel-2014.06.eb create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2014.06.eb create mode 100644 easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014.06.eb create mode 100644 easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2014.06.eb create mode 100644 easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2014.06.eb create mode 100644 easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_79.eb create mode 100644 easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2014.06.eb create mode 100644 easybuild/easyconfigs/j/Java/Java-1.7.0_79.eb create mode 100644 easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb create mode 100644 easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014.06.eb create mode 100644 easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014.06.eb create mode 100644 easybuild/easyconfigs/l/libpng/libpng-1.6.12-intel-2014.06.eb create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014.06.eb create mode 100644 easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014.06.eb create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2014.06.eb create mode 100644 easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014.06.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014.06.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014.06.eb diff --git a/easybuild/easyconfigs/a/ant/ant-1.9.3-Java-1.7.0_79.eb b/easybuild/easyconfigs/a/ant/ant-1.9.3-Java-1.7.0_79.eb new file mode 100644 index 0000000000..e1662e8bf2 --- /dev/null +++ b/easybuild/easyconfigs/a/ant/ant-1.9.3-Java-1.7.0_79.eb @@ -0,0 +1,26 @@ +name = 'ant' +version = '1.9.3' + +homepage = 'http://ant.apache.org/' +description = """Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files + as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['apache-%(name)s-%(version)s-src.tar.gz'] +source_urls = ['http://archive.apache.org/dist/%(name)s/source/'] + +java = 'Java' +javaver = '1.7.0_79' +versionsuffix = '-%s-%s' % (java, javaver) + +dependencies = [(java, javaver)] + +builddependencies = [('JUnit', '4.11', versionsuffix)] + +sanity_check_paths = { + 'files': ['bin/ant', 'lib/ant.jar', 'lib/ant.jar'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-intel-2014.06.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-intel-2014.06.eb new file mode 100644 index 0000000000..567328a2d6 --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-intel-2014.06.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'intel', 'version': '2014.06'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2014.06.eb b/easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2014.06.eb new file mode 100644 index 0000000000..447079089d --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.0.0-intel-2014.06.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.0.0' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'intel', 'version': '2014.06'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014.06.eb b/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014.06.eb new file mode 100644 index 0000000000..36569d20af --- /dev/null +++ b/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014.06.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'ffmpeg' +version = '2.4' + +homepage = 'https://www.ffmpeg.org/' +description = """A complete, cross-platform solution to record, convert and stream audio and video.""" + +toolchain = {'name': 'intel', 'version': '2014.06'} + +sources = [SOURCE_TAR_BZ2] +source_urls = ['http://ffmpeg.org/releases/'] + +configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX"' + +dependencies = [ + ('NASM', '2.11.05'), + ('zlib', '1.2.8'), +] + +sanity_check_paths = { + 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server'] ] + + ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc', + 'swresample', 'swscale', 'avutil'] for y in ['so', 'a']], + 'dirs': ['include'] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2014.06.eb b/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2014.06.eb new file mode 100644 index 0000000000..0b2f10e82d --- /dev/null +++ b/easybuild/easyconfigs/g/GLib/GLib-2.40.0-intel-2014.06.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'GLib' +version = '2.40.0' + +homepage = 'http://www.gtk.org/' +description = """GLib is one of the base libraries of the GTK+ project""" + +toolchain = {'name': 'intel', 'version': '2014.06'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://ftp.gnome.org/pub/gnome/sources/glib/%(version_major_minor)s/'] +sources = ['glib-%(version)s.tar.xz'] + +dependencies = [ + ('libffi', '3.1'), + ('gettext', '0.19.2'), +] +builddependencies = [('Python', '2.7.8')] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2014.06.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2014.06.eb new file mode 100644 index 0000000000..238843b206 --- /dev/null +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.2-intel-2014.06.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'gettext' +version = '0.19.2' + +homepage = 'http://www.gnu.org/software/gettext/' +description = """GNU `gettext' is an important step for the GNU Translation Project, as it is an asset on which we may +build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools +and documentation""" + +toolchain = {'name': 'intel', 'version': '2014.06'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = '--without-emacs' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_79.eb b/easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_79.eb new file mode 100644 index 0000000000..4c4751893b --- /dev/null +++ b/easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_79.eb @@ -0,0 +1,25 @@ +easyblock = 'JAR' + +name = 'JUnit' +version = '4.11' + +homepage = 'http://sourceforge.net/projects/junit' +description = """A programmer-oriented testing framework for Java.""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['%(namelower)s-%(version)s.jar'] +source_urls = ['http://search.maven.org/remotecontent?filepath=junit/junit/%(version)s/'] + +java = 'Java' +javaver = '1.7.0_79' +versionsuffix = '-%s-%s' % (java, javaver) + +dependencies = [(java, javaver)] + +sanity_check_paths = { + 'files': sources, + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2014.06.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2014.06.eb new file mode 100644 index 0000000000..41dba8410e --- /dev/null +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-intel-2014.06.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'JasPer' +version = '1.900.1' + +homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' +description = """The JasPer Project is an open-source initiative to provide a free + software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" + +toolchain = {'name': 'intel', 'version': '2014.06'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_ZIP] +source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] + +sanity_check_paths = { + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/j/Java/Java-1.7.0_79.eb b/easybuild/easyconfigs/j/Java/Java-1.7.0_79.eb new file mode 100644 index 0000000000..d7b280abb2 --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.7.0_79.eb @@ -0,0 +1,15 @@ +name = 'Java' +version = '1.7.0_79' + +homepage = 'http://java.com/' +description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb new file mode 100644 index 0000000000..987c5b0636 --- /dev/null +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'LibTIFF' +version = '4.0.3' + +homepage = 'http://www.remotesensing.org/libtiff/' +description = "tiff: Library and tools for reading and writing TIFF data files" + +source_urls = ['ftp://ftp.remotesensing.org/pub/libtiff/'] +sources = ['tiff-%(version)s.tar.gz'] + +toolchain = {'name': 'intel', 'version': '2014.06'} + +sanity_check_paths = { + 'files': ['bin/tiffinfo'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014.06.eb b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014.06.eb new file mode 100644 index 0000000000..1db00ffb5e --- /dev/null +++ b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014.06.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'libffi' +version = '3.1' + +homepage = 'http://sourceware.org/libffi/' +description = """The libffi library provides a portable, high level programming interface to various calling +conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" + +toolchain = {'name': 'intel', 'version': '2014.06'} + +source_urls = [ + 'ftp://sourceware.org/pub/libffi/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', +] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['lib/libffi.%s' % SHLIB_EXT, 'lib/libffi.a'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014.06.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014.06.eb new file mode 100644 index 0000000000..c76e470179 --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014.06.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.3.1' + +homepage = 'http://sourceforge.net/libjpeg-turbo/' +description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG +compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'intel', 'version': '2014.06'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('NASM', '2.11.05'), +] + +configopts = "--with-jpeg8" +runtest = "test" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.12-intel-2014.06.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-intel-2014.06.eb new file mode 100644 index 0000000000..e5160148db --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.12-intel-2014.06.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.12' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'intel', 'version': '2014.06'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014.06.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014.06.eb new file mode 100644 index 0000000000..7154c323ba --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014.06.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'intel', 'version': '2014.06'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014.06.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014.06.eb new file mode 100644 index 0000000000..2a7e58d385 --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014.06.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.11.05' + +homepage = 'http://www.nasm.us/' +description = """NASM: General-purpose x86 assembler""" + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] + +toolchain = {'name': 'intel', 'version': '2014.06'} + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2014.06.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2014.06.eb new file mode 100644 index 0000000000..e1045e7b9f --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-intel-2014.06.eb @@ -0,0 +1,15 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'intel', 'version': '2014.06'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014.06.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014.06.eb new file mode 100644 index 0000000000..9bed0737f0 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014.06.eb @@ -0,0 +1,76 @@ +easyblock = 'CMakeMake' + +name = 'OpenCV' +version = '2.4.9' + +homepage = 'http://opencv.org/' +description = """OpenCV (Open Source Computer Vision Library) is an open source computer vision + and machine learning software library. OpenCV was built to provide + a common infrastructure for computer vision applications and to accelerate + the use of machine perception in the commercial products.""" + +toolchain = {'name': 'intel', 'version': '2014.06'} +toolchainopts = {'opt': True, 'optarch': True} + +sources = [SOURCELOWER_ZIP] +source_urls = [('http://sourceforge.net/projects/opencvlibrary/files/opencv-unix/%(version)s', 'download')] + +patches = ['OpenCV-%(version)s_with_IPP.patch'] + +osdependencies = ['gtk2-devel'] + +builddependencies = [ + ('CMake', '3.0.0'), +] + +python = 'Python' +pythonver = '2.7.8' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +java = 'Java' +javaver = '1.7.0_79' + +dependencies = [ + (python, pythonver), + ('zlib', '1.2.8'), + ('ffmpeg', '2.4'), + ('libjpeg-turbo', '1.3.1'), + ('libpng', '1.6.12'), + ('LibTIFF', '4.0.3'), + ('JasPer', '1.900.1'), + (java, javaver ,'', True), + ('ant', '1.9.3', '-%s-%s' % (java,javaver), True), + ('GLib', '2.40.0') +] + +preconfigopts = 'export IPPROOT=$EBROOTICC/ipp && ' + +configopts = '-DCMAKE_BUILD_TYPE=RELEASE ' +configopts += '-DBUILD_PYTHON_SUPPORT=ON ' +configopts += '-DPYTHON_PACKAGES_PATH=$EBROOTPYTHON/lib/python%s/site-packages ' % pythonshortver +configopts += '-DBUILD_NEW_PYTHON_SUPPORT=ON ' +configopts += '-DZLIB_LIBRARY=$EBROOTZLIB/lib/libz.so ' +configopts += '-DZLIB_INCLUDE_DIR=$EBROOTZLIB/include ' +configopts += '-DTIFF_LIBRARY=$EBROOTLIBTIFF/lib/libtiff.so ' +configopts += '-DTIFF_INCLUDE_DIR=$EBROOTLIBTIFF/include ' +configopts += '-DPNG_LIBRARY=$EBROOTLIBPNG/lib/libpng.so ' +configopts += '-DPNG_INCLUDE_DIR=$EBROOTLIBPNG/include ' +configopts += '-DJPEG_LIBRARY=$EBROOTLIBJPEGMINTURBO/lib/libjpeg.so ' +configopts += '-DJPEG_INCLUDE_DIR=$EBROOTLIBJPEGMINTURBO/include ' +configopts += '-DJASPER_LIBRARY=$EBROOTJASPER/lib/libjasper.a ' +configopts += '-DJASPER_INCLUDE_DIR=$EBROOTJASPER/include ' +configopts += '-DWITH_IPP=ON ' +configopts += '-DENABLE_SSE=ON -DENABLE_SSE2=ON -DENABLE_SSE3=ON ' +configopts += '-DWITH_CUDA=OFF ' + +sanity_check_paths = { + 'files': ['lib/libopencv_core.so'] + + [ 'bin/opencv_%s' % x for x in ['haartraining', 'createsamples', 'performance', 'traincascade'] ], + 'dirs': ['include'] +} + +modextrapaths = { + 'PYTHONPATH': 'lib/python%s/site-packages' % pythonshortver, + 'CLASSPATH': 'share/OpenCV/java', +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014.06.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014.06.eb new file mode 100644 index 0000000000..db0f00951f --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014.06.eb @@ -0,0 +1,94 @@ +name = 'Python' +version = '2.7.8' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'intel', 'version': '2014.06'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.8.1' +scipyversion = '0.14.0' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# libffi build in python is still broken, see http://bugs.python.org/issue4130 +patches = ['python-2.7_libffi-include-xmmintrin.patch'] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +] + +# order is important! +# Version updated 08/JULY/2014 +exts_list = [ + ('setuptools', '5.4.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '1.5.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.3', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-%s-mkl.patch' % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['https://mpi4py.googlecode.com/files/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.9.1', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.20.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('dateutil', '2.2', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('paramiko', '1.14.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014.06.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014.06.eb new file mode 100644 index 0000000000..7873060724 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014.06.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'intel', 'version': '2014.06'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +preconfigopts = 'LDSHARED="$CC -shared"' + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 495f273d92617554442f773a673707cfeaea0403 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 23 Apr 2015 09:52:44 +0200 Subject: [PATCH 0990/1217] Updated checksum --- easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb b/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb index 7a65f31c78..85c24b1b81 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb @@ -29,7 +29,7 @@ sources = [ patches = [('mpfr-%s-allpatches-20141204.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] checksums = [ - '37cdc2eb0adf92e421c0841748ac1471', # gcc-5.1.0.tar.bz2 + 'd5525b1127d07d215960e6051c5da35e', # gcc-5.1.0.tar.bz2 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz 'd6a1d5f8ddea3abd2cc3e98f58352d26', # mpc-1.0.3.tar.gz -- GitLab From 3a22caad5a4aafd57c8db00ad2d88d20c9bcbf30 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 23 Apr 2015 09:54:21 +0200 Subject: [PATCH 0991/1217] sync with easyconfigs in develop where needed --- .../l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb | 16 +++++++++++++++- .../l/libffi/libffi-3.1-intel-2014.06.eb | 2 +- .../n/NASM/NASM-2.11.05-intel-2014.06.eb | 11 +++++++++++ .../p/Python/Python-2.7.8-intel-2014.06.eb | 13 ++++++++++--- .../z/zlib/zlib-1.2.8-intel-2014.06.eb | 2 -- 5 files changed, 37 insertions(+), 7 deletions(-) diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb index 987c5b0636..e29ed51d54 100644 --- a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.3-intel-2014.06.eb @@ -1,3 +1,14 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## easyblock = 'ConfigureMake' name = 'LibTIFF' @@ -6,7 +17,10 @@ version = '4.0.3' homepage = 'http://www.remotesensing.org/libtiff/' description = "tiff: Library and tools for reading and writing TIFF data files" -source_urls = ['ftp://ftp.remotesensing.org/pub/libtiff/'] +source_urls = [ + 'http://download.osgeo.org/libtiff/', + 'ftp://ftp.remotesensing.org/pub/libtiff/', +] sources = ['tiff-%(version)s.tar.gz'] toolchain = {'name': 'intel', 'version': '2014.06'} diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014.06.eb b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014.06.eb index 1db00ffb5e..4f8e9bd62b 100644 --- a/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014.06.eb +++ b/easybuild/easyconfigs/l/libffi/libffi-3.1-intel-2014.06.eb @@ -16,7 +16,7 @@ source_urls = [ sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['lib/libffi.%s' % SHLIB_EXT, 'lib/libffi.a'], + 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], 'dirs': [], } diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014.06.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014.06.eb index 2a7e58d385..8eacf467e7 100644 --- a/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014.06.eb +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.05-intel-2014.06.eb @@ -1,3 +1,14 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## easyblock = 'ConfigureMake' name = 'NASM' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014.06.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014.06.eb index db0f00951f..54d5edce60 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014.06.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014.06.eb @@ -22,8 +22,11 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + # order is important! # Version updated 08/JULY/2014 exts_list = [ @@ -49,7 +52,7 @@ exts_list = [ 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { - 'source_urls': ['https://mpi4py.googlecode.com/files/'], + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], @@ -63,6 +66,9 @@ exts_list = [ ('Cython', '0.20.2', { 'source_urls': ['http://www.cython.org/release/'], }), + ('six', '1.7.3', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], @@ -81,6 +87,9 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), ('paramiko', '1.14.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], }), @@ -89,6 +98,4 @@ exts_list = [ }), ] -osdependencies = [('openssl-devel', 'libssl-dev')] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014.06.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014.06.eb index 7873060724..24f9e69fb8 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014.06.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014.06.eb @@ -14,8 +14,6 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -preconfigopts = 'LDSHARED="$CC -shared"' - sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], -- GitLab From 9f8ec0262d4e374fa6a57f40dc8b9b6b68d1c1a6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 23 Apr 2015 10:13:52 +0200 Subject: [PATCH 0992/1217] style fix in Octave easyconfigs --- easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb | 2 +- easybuild/easyconfigs/o/Octave/Octave-3.8.2-intel-2015a.eb | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb index 2bf046bbd9..eeea60d967 100644 --- a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb +++ b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-foss-2015a.eb @@ -17,7 +17,7 @@ dependencies = [ ('libreadline', '6.3'), ] -configopts = '--with-blas="${LIBBLAS}"' +configopts = '--with-blas="$LIBBLAS"' sanity_check_paths = { 'files': ['bin/octave'], diff --git a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-intel-2015a.eb b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-intel-2015a.eb index a4fb263cdc..2b1159f006 100644 --- a/easybuild/easyconfigs/o/Octave/Octave-3.8.2-intel-2015a.eb +++ b/easybuild/easyconfigs/o/Octave/Octave-3.8.2-intel-2015a.eb @@ -19,7 +19,7 @@ dependencies = [ ('libreadline', '6.3'), ] -configopts = '--with-blas="${LIBBLAS}"' +configopts = '--with-blas="$LIBBLAS"' sanity_check_paths = { 'files': ['bin/octave'], -- GitLab From c3296f64fab24fd62f35f533e1814ba9afa8d359 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 23 Apr 2015 13:27:45 +0200 Subject: [PATCH 0993/1217] Update GCC easyconfig --- easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb | 4 ---- 1 file changed, 4 deletions(-) diff --git a/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb b/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb index 85c24b1b81..8a37c34c77 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb @@ -23,7 +23,6 @@ sources = [ 'gmp-6.0.0a.tar.bz2', 'mpfr-%s.tar.gz' % mpfr_version, 'mpc-1.0.3.tar.gz', - 'isl-0.14.tar.bz2', ] patches = [('mpfr-%s-allpatches-20141204.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] @@ -33,14 +32,11 @@ checksums = [ 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz 'd6a1d5f8ddea3abd2cc3e98f58352d26', # mpc-1.0.3.tar.gz - 'acd347243fca5609e3df37dba47fd0bb', # isl-0.14.tar.bz2 '58aec98d15982f9744a043d2f1c5af82', # mpfr-3.1.2-allpatches-20141204.patch ] languages = ['c', 'c++', 'fortran'] -#withisl = True - # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 -- GitLab From 90f959d537610594d36dd1f3bd37cfdd044f32f2 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 23 Apr 2015 13:27:56 +0200 Subject: [PATCH 0994/1217] Add GCC with ISL and 3 stage build --- easybuild/easyconfigs/g/GCC/GCC-5.1.0-ISL.eb | 53 ++++++++++++++++++++ 1 file changed, 53 insertions(+) create mode 100644 easybuild/easyconfigs/g/GCC/GCC-5.1.0-ISL.eb diff --git a/easybuild/easyconfigs/g/GCC/GCC-5.1.0-ISL.eb b/easybuild/easyconfigs/g/GCC/GCC-5.1.0-ISL.eb new file mode 100644 index 0000000000..49c83175bd --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-5.1.0-ISL.eb @@ -0,0 +1,53 @@ +name = "GCC" +version = '5.1.0' +versionsuffix = 'ISL' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +mpfr_version = '3.1.2' + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] + +sources = [ + SOURCELOWER_TAR_BZ2, + 'gmp-6.0.0a.tar.bz2', + 'mpfr-%s.tar.gz' % mpfr_version, + 'mpc-1.0.3.tar.gz', + 'isl-0.14.tar.bz2', +] + +patches = [('mpfr-%s-allpatches-20141204.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] + +checksums = [ + 'd5525b1127d07d215960e6051c5da35e', # gcc-5.1.0.tar.bz2 + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + 'd6a1d5f8ddea3abd2cc3e98f58352d26', # mpc-1.0.3.tar.gz + 'acd347243fca5609e3df37dba47fd0bb', # isl-0.14.tar.bz2 + '58aec98d15982f9744a043d2f1c5af82', # mpfr-3.1.2-allpatches-20141204.patch +] + +languages = ['c', 'c++', 'fortran'] + +withisl = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +sanity_check_paths = { + 'files': ['bin/gcc'], + 'dirs': ["."] +} + +moduleclass = 'compiler' -- GitLab From fa38bc69b483bcff92c4d4882700de0954f8cc56 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 23 Apr 2015 13:35:19 +0200 Subject: [PATCH 0995/1217] Updated version suffix --- easybuild/easyconfigs/g/GCC/GCC-5.1.0-ISL.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GCC/GCC-5.1.0-ISL.eb b/easybuild/easyconfigs/g/GCC/GCC-5.1.0-ISL.eb index 49c83175bd..acd0ece277 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-5.1.0-ISL.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-5.1.0-ISL.eb @@ -1,6 +1,6 @@ name = "GCC" version = '5.1.0' -versionsuffix = 'ISL' +versionsuffix = '-ISL' homepage = 'http://gcc.gnu.org/' description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, -- GitLab From 981ae913f660d72ed08edb7589eb97273a5117ee Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 23 Apr 2015 16:06:02 +0200 Subject: [PATCH 0996/1217] Only build a ISL enabled version of GCC --- easybuild/easyconfigs/g/GCC/GCC-5.1.0-ISL.eb | 53 -------------------- easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb | 4 ++ 2 files changed, 4 insertions(+), 53 deletions(-) delete mode 100644 easybuild/easyconfigs/g/GCC/GCC-5.1.0-ISL.eb diff --git a/easybuild/easyconfigs/g/GCC/GCC-5.1.0-ISL.eb b/easybuild/easyconfigs/g/GCC/GCC-5.1.0-ISL.eb deleted file mode 100644 index acd0ece277..0000000000 --- a/easybuild/easyconfigs/g/GCC/GCC-5.1.0-ISL.eb +++ /dev/null @@ -1,53 +0,0 @@ -name = "GCC" -version = '5.1.0' -versionsuffix = '-ISL' - -homepage = 'http://gcc.gnu.org/' -description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, - as well as libraries for these languages (libstdc++, libgcj,...).""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -mpfr_version = '3.1.2' - -source_urls = [ - 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror - 'http://ftpmirror.gnu.org/gmp', # idem for GMP - 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR - 'http://www.multiprecision.org/mpc/download', # MPC official - 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies - 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies -] - -sources = [ - SOURCELOWER_TAR_BZ2, - 'gmp-6.0.0a.tar.bz2', - 'mpfr-%s.tar.gz' % mpfr_version, - 'mpc-1.0.3.tar.gz', - 'isl-0.14.tar.bz2', -] - -patches = [('mpfr-%s-allpatches-20141204.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] - -checksums = [ - 'd5525b1127d07d215960e6051c5da35e', # gcc-5.1.0.tar.bz2 - 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 - '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz - 'd6a1d5f8ddea3abd2cc3e98f58352d26', # mpc-1.0.3.tar.gz - 'acd347243fca5609e3df37dba47fd0bb', # isl-0.14.tar.bz2 - '58aec98d15982f9744a043d2f1c5af82', # mpfr-3.1.2-allpatches-20141204.patch -] - -languages = ['c', 'c++', 'fortran'] - -withisl = True - -# building GCC sometimes fails if make parallelism is too high, so let's limit it -maxparallel = 4 - -sanity_check_paths = { - 'files': ['bin/gcc'], - 'dirs': ["."] -} - -moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb b/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb index 8a37c34c77..4968008ae8 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-5.1.0.eb @@ -23,6 +23,7 @@ sources = [ 'gmp-6.0.0a.tar.bz2', 'mpfr-%s.tar.gz' % mpfr_version, 'mpc-1.0.3.tar.gz', + 'isl-0.14.tar.bz2', ] patches = [('mpfr-%s-allpatches-20141204.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] @@ -32,11 +33,14 @@ checksums = [ 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz 'd6a1d5f8ddea3abd2cc3e98f58352d26', # mpc-1.0.3.tar.gz + 'acd347243fca5609e3df37dba47fd0bb', # isl-0.14.tar.bz2 '58aec98d15982f9744a043d2f1c5af82', # mpfr-3.1.2-allpatches-20141204.patch ] languages = ['c', 'c++', 'fortran'] +withisl = True + # building GCC sometimes fails if make parallelism is too high, so let's limit it maxparallel = 4 -- GitLab From c83c8a1aa6eecac035536643e20914e3c85314b5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 24 Apr 2015 10:33:53 +0200 Subject: [PATCH 0997/1217] load cray-libsci versionless --- easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb | 3 ++- easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb index 9f424cdc02..b105aa0520 100644 --- a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb @@ -10,7 +10,8 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} dependencies = [ ('PrgEnv-gnu/' + version, EXTERNAL_MODULE), - ('cray-libsci/13.0.1', EXTERNAL_MODULE), # loaded by PrgEnv-gnu + # cray-libsci is intentionally loaded with specifying a version, loaded by PrgEnv-gnu (version is site-specific) + ('cray-libsci', EXTERNAL_MODULE), ('fftw/3.3.4.0', EXTERNAL_MODULE), ] diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb index 37804fbb5c..05afff31a0 100644 --- a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb @@ -10,7 +10,8 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} dependencies = [ ('PrgEnv-gnu/' + version, EXTERNAL_MODULE), - ('cray-libsci/13.0.3', EXTERNAL_MODULE), # loaded by PrgEnv-gnu + # cray-libsci is intentionally loaded with specifying a version, loaded by PrgEnv-gnu (version is site-specific) + ('cray-libsci', EXTERNAL_MODULE), # loaded by PrgEnv-gnu ('fftw/3.3.4.2', EXTERNAL_MODULE), ] -- GitLab From a49ebcb5cb34aa948f311f2b7801ce63f762dd8d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 24 Apr 2015 15:41:02 +0200 Subject: [PATCH 0998/1217] bump to latest versions (IPython 3.1.0), add Pygments dep for IPython --- ...IPython-3.1.0-intel-2015a-Python-2.7.9.eb} | 7 ++-- ...Q-14.6.0-intel-2015a-Python-2.7.9-zmq3.eb} | 4 +-- ...Q-2.2.0.1-intel-2015a-Python-2.7.9-zmq3.eb | 31 ------------------ ...Pygments-2.0.2-intel-2015a-Python-2.7.9.eb | 30 +++++++++++++++++ ...pysqlite-2.6.3-intel-2015a-Python-2.7.9.eb | 32 +++++++++++++++++++ ...equests-2.6.2-intel-2015a-Python-2.7.9.eb} | 6 ++-- .../util-linux-2.22.2-intel-2015a.eb | 29 ----------------- ...l-2015a.eb => ZeroMQ-3.2.5-intel-2015a.eb} | 6 ++-- 8 files changed, 74 insertions(+), 71 deletions(-) rename easybuild/easyconfigs/i/IPython/{IPython-3.0.0-intel-2015a-Python-2.7.9.eb => IPython-3.1.0-intel-2015a-Python-2.7.9.eb} (88%) rename easybuild/easyconfigs/p/PyZMQ/{PyZMQ-14.5.0-intel-2015a-Python-2.7.9-zmq3.eb => PyZMQ-14.6.0-intel-2015a-Python-2.7.9-zmq3.eb} (94%) delete mode 100644 easybuild/easyconfigs/p/PyZMQ/PyZMQ-2.2.0.1-intel-2015a-Python-2.7.9-zmq3.eb create mode 100644 easybuild/easyconfigs/p/Pygments/Pygments-2.0.2-intel-2015a-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/p/pysqlite/pysqlite-2.6.3-intel-2015a-Python-2.7.9.eb rename easybuild/easyconfigs/r/requests/{requests-2.6.0-intel-2015a-Python-2.7.9.eb => requests-2.6.2-intel-2015a-Python-2.7.9.eb} (80%) delete mode 100644 easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2015a.eb rename easybuild/easyconfigs/z/ZeroMQ/{ZeroMQ-3.2.2-intel-2015a.eb => ZeroMQ-3.2.5-intel-2015a.eb} (93%) diff --git a/easybuild/easyconfigs/i/IPython/IPython-3.0.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/i/IPython/IPython-3.1.0-intel-2015a-Python-2.7.9.eb similarity index 88% rename from easybuild/easyconfigs/i/IPython/IPython-3.0.0-intel-2015a-Python-2.7.9.eb rename to easybuild/easyconfigs/i/IPython/IPython-3.1.0-intel-2015a-Python-2.7.9.eb index bda10584b8..377e678904 100644 --- a/easybuild/easyconfigs/i/IPython/IPython-3.0.0-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/i/IPython/IPython-3.1.0-intel-2015a-Python-2.7.9.eb @@ -1,7 +1,7 @@ easyblock = "PythonPackage" name = 'IPython' -version = '3.0.0' +version = '3.1.0' homepage = 'http://ipython.org/index.html' description = """IPython provides a rich architecture for interactive computing with: @@ -24,8 +24,9 @@ versionsuffix = '-%s-%s' % (python, pyver) dependencies = [ (python, pyver), ('pysqlite', '2.6.3', versionsuffix), - ('PyZMQ', '14.5.0', '%s-zmq3' % versionsuffix), - ('requests', '2.6.0', versionsuffix) + ('PyZMQ', '14.6.0', '%s-zmq3' % versionsuffix), + ('requests', '2.6.2', versionsuffix), + ('Pygments', '2.0.2', versionsuffix), ] # override extensions sanity check, default filter that imports a Python module doesn't work here diff --git a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-14.5.0-intel-2015a-Python-2.7.9-zmq3.eb b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-14.6.0-intel-2015a-Python-2.7.9-zmq3.eb similarity index 94% rename from easybuild/easyconfigs/p/PyZMQ/PyZMQ-14.5.0-intel-2015a-Python-2.7.9-zmq3.eb rename to easybuild/easyconfigs/p/PyZMQ/PyZMQ-14.6.0-intel-2015a-Python-2.7.9-zmq3.eb index b297340fc3..182cf6eed5 100644 --- a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-14.5.0-intel-2015a-Python-2.7.9-zmq3.eb +++ b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-14.6.0-intel-2015a-Python-2.7.9-zmq3.eb @@ -1,7 +1,7 @@ easyblock = 'PythonPackage' name = 'PyZMQ' -version = '14.5.0' +version = '14.6.0' homepage = 'http://www.zeromq.org/bindings:python' description = """Python bindings for ZeroMQ""" @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] python = 'Python' pythonversion = '2.7.9' pythonshortversion = ".".join(pythonversion.split(".")[0:2]) -zmqversion = '3.2.2' +zmqversion = '3.2.5' versionsuffix = '-%s-%s-%s' % (python, pythonversion, 'zmq%s' % zmqversion.split('.')[0]) diff --git a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-2.2.0.1-intel-2015a-Python-2.7.9-zmq3.eb b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-2.2.0.1-intel-2015a-Python-2.7.9-zmq3.eb deleted file mode 100644 index 022cf3fe3b..0000000000 --- a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-2.2.0.1-intel-2015a-Python-2.7.9-zmq3.eb +++ /dev/null @@ -1,31 +0,0 @@ -name = 'PyZMQ' -version = '2.2.0.1' - -homepage = 'http://www.zeromq.org/bindings:python' -description = """Python bindings for ZeroMQ""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -source_urls = [PYPI_LOWER_SOURCE] -sources = [SOURCELOWER_TAR_GZ] - -python = 'Python' -pythonversion = '2.7.9' -pythonshortversion = ".".join(pythonversion.split(".")[0:2]) -zmqversion = '3.2.2' - -versionsuffix = '-%s-%s-%s' % (python, pythonversion, 'zmq%s' % zmqversion.split('.')[0]) - -dependencies = [ - (python, pythonversion), - ('ZeroMQ', zmqversion), -] - -options = {'modulename': 'zmq'} - -sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%s/site-packages/zmq' % pythonshortversion], -} - -moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/Pygments/Pygments-2.0.2-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/Pygments/Pygments-2.0.2-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..c6557db043 --- /dev/null +++ b/easybuild/easyconfigs/p/Pygments/Pygments-2.0.2-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,30 @@ +easyblock = 'PythonPackage' + +name = 'Pygments' +version = '2.0.2' + +homepage = 'https://pypi.python.org/pypi/requests/2.6.0' +description = """Python http for humans""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonversion = '2.7.9' +pyshortver = ".".join(pythonversion.split(".")[0:2]) + +versionsuffix = '-%s-%s' % (python, pythonversion) + +dependencies = [ + (python, pythonversion), +] + +sanity_check_paths = { + 'files': ['bin/pygmentize'], + 'dirs': ['lib/python%s/site-packages/%%(name)s-%%(version)s-py%s.egg' % (pyshortver, pyshortver)], +} + +moduleclass = 'devel' + diff --git a/easybuild/easyconfigs/p/pysqlite/pysqlite-2.6.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/pysqlite/pysqlite-2.6.3-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..cbbee774d8 --- /dev/null +++ b/easybuild/easyconfigs/p/pysqlite/pysqlite-2.6.3-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,32 @@ +easyblock = "PythonPackage" + +name = 'pysqlite' +version = '2.6.3' + +homepage = 'https://pypi.python.org/pypi/pysqlite' +description = """pysqlite is an interface to the SQLite 3.x embedded relational database engine. + It is almost fully compliant with the Python database API version 2.0 also exposes the unique features of SQLite.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pyver = '2.7.9' +pyshortver = '.'.join(pyver.split('.')[:2]) +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), + ('SQLite', '3.8.8.1'), # also dependency for Python itself +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/%%(name)s%%(version_major)s' % pyshortver], +} + +options = {'modulename': '%(name)s%(version_major)s'} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/r/requests/requests-2.6.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/r/requests/requests-2.6.2-intel-2015a-Python-2.7.9.eb similarity index 80% rename from easybuild/easyconfigs/r/requests/requests-2.6.0-intel-2015a-Python-2.7.9.eb rename to easybuild/easyconfigs/r/requests/requests-2.6.2-intel-2015a-Python-2.7.9.eb index 4a577a2051..c746104f6f 100644 --- a/easybuild/easyconfigs/r/requests/requests-2.6.0-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/r/requests/requests-2.6.2-intel-2015a-Python-2.7.9.eb @@ -1,7 +1,7 @@ easyblock = 'PythonPackage' name = 'requests' -version = '2.6.0' +version = '2.6.2' homepage = 'https://pypi.python.org/pypi/requests/2.6.0' description = """Python http for humans""" @@ -13,7 +13,7 @@ sources = [SOURCELOWER_TAR_GZ] python = 'Python' pythonversion = '2.7.9' -pythonshortversion = ".".join(pythonversion.split(".")[0:2]) +pyshortver = ".".join(pythonversion.split(".")[0:2]) versionsuffix = '-%s-%s' % (python, pythonversion) @@ -23,7 +23,7 @@ dependencies = [ sanity_check_paths = { 'files': [], - 'dirs': ['lib/python%s/site-packages/requests-%s-py%s.egg' % (pythonshortversion, version, pythonshortversion) ], + 'dirs': ['lib/python%s/site-packages/requests-%s-py%s.egg' % (pyshortver, version, pyshortver)], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2015a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2015a.eb deleted file mode 100644 index 7cdce40ba2..0000000000 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2015a.eb +++ /dev/null @@ -1,29 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'util-linux' -version = '2.22.2' - -homepage = 'http://www.kernel.org/pub/linux/utils/util-linux' -description = """Set of Linux utilities""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -source_urls = ['%s/v%s'%(homepage,'.'.join(version.split('.')[0:2]) )] -sources = [SOURCELOWER_TAR_GZ] - -# disable account related utilities (they need OS dependant pam-devel files) -# disable wall and friends (requires group changing permissions for install user) -# install systemd service files in install dir -configopts = '--disable-chfn-chsh --disable-login --disable-su ' -configopts += '--disable-wall --disable-use-tty-group ' -configopts += '--disable-makeinstall-chown --disable-makeinstall-setuid ' -configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " - -dependencies = [('ncurses', '5.9')] - -sanity_check_paths = { - 'files': ['lib/lib%s.a' % x for x in ['blkid' , 'mount', 'uuid']], - 'dirs': ['include', 'bin', 'share', 'sbin'], -} - -moduleclass = 'tools' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-intel-2015a.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.5-intel-2015a.eb similarity index 93% rename from easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-intel-2015a.eb rename to easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.5-intel-2015a.eb index 537584a82a..19243eab21 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-intel-2015a.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.5-intel-2015a.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'ZeroMQ' -version = '3.2.2' +version = '3.2.5' homepage = 'http://www.zeromq.org/' description = """ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. @@ -16,7 +16,7 @@ toolchain = {'name': 'intel', 'version': '2015a'} source_urls = ['http://download.zeromq.org/'] sources = [SOURCELOWER_TAR_GZ] -patches = ['ZeroMQ-%(version)s_icc.patch'] +patches = ['ZeroMQ-3.2.2_icc.patch'] # --with-pgm will use shipped OpenPGM (in foreign subdir) configopts = '--with-pic --with-system-pgm ' @@ -25,7 +25,7 @@ configopts += 'OpenPGM_LIBS="-L$EBROOTOPENPGM/lib -lpgm -lrt -lpthread -lm" ' dependencies = [ ('OpenPGM', '5.2.122'), - ('util-linux', '2.22.2'), + ('util-linux', '2.26.1'), ] sanity_check_paths = { -- GitLab From 77d9f566d3b11b2445277589eba80aacf845a598 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 24 Apr 2015 15:46:50 +0200 Subject: [PATCH 0999/1217] minor style fixes --- .../easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb | 4 ++-- .../p/PyZMQ/PyZMQ-14.6.0-intel-2015a-Python-2.7.9-zmq3.eb | 5 ++--- .../p/Pygments/Pygments-2.0.2-intel-2015a-Python-2.7.9.eb | 3 +-- .../r/requests/requests-2.6.2-intel-2015a-Python-2.7.9.eb | 3 +-- 4 files changed, 6 insertions(+), 9 deletions(-) diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb index 9ac5fd9480..bb2adb94d7 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb @@ -12,8 +12,8 @@ description = """OpenPGM is an open source implementation of the Pragmatic Gener toolchain = {'name': 'intel', 'version': '2015a'} -source_urls = ['http://%s.googlecode.com/files/' % (name.lower())] -sources = ['%s-%s.tar.gz' % ('libpgm', version)] +source_urls = [GOOGLECODE_SOURCE] +sources = ['libpgm-%(version)s.tar.gz'] configopts = '--with-pic' diff --git a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-14.6.0-intel-2015a-Python-2.7.9-zmq3.eb b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-14.6.0-intel-2015a-Python-2.7.9-zmq3.eb index 182cf6eed5..e38ac2e143 100644 --- a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-14.6.0-intel-2015a-Python-2.7.9-zmq3.eb +++ b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-14.6.0-intel-2015a-Python-2.7.9-zmq3.eb @@ -13,7 +13,7 @@ sources = [SOURCELOWER_TAR_GZ] python = 'Python' pythonversion = '2.7.9' -pythonshortversion = ".".join(pythonversion.split(".")[0:2]) +pyshortver = '.'.join(pythonversion.split('.')[:2]) zmqversion = '3.2.5' versionsuffix = '-%s-%s-%s' % (python, pythonversion, 'zmq%s' % zmqversion.split('.')[0]) @@ -27,8 +27,7 @@ options = {'modulename': 'zmq'} sanity_check_paths = { 'files': [], - 'dirs': ['lib/python%s/site-packages/zmq' % pythonshortversion], + 'dirs': ['lib/python%s/site-packages/zmq' % pyshortver], } moduleclass = 'devel' - diff --git a/easybuild/easyconfigs/p/Pygments/Pygments-2.0.2-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/Pygments/Pygments-2.0.2-intel-2015a-Python-2.7.9.eb index c6557db043..06251d7872 100644 --- a/easybuild/easyconfigs/p/Pygments/Pygments-2.0.2-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/Pygments/Pygments-2.0.2-intel-2015a-Python-2.7.9.eb @@ -13,7 +13,7 @@ sources = [SOURCE_TAR_GZ] python = 'Python' pythonversion = '2.7.9' -pyshortver = ".".join(pythonversion.split(".")[0:2]) +pyshortver = '.'.join(pythonversion.split('.')[:2]) versionsuffix = '-%s-%s' % (python, pythonversion) @@ -27,4 +27,3 @@ sanity_check_paths = { } moduleclass = 'devel' - diff --git a/easybuild/easyconfigs/r/requests/requests-2.6.2-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/r/requests/requests-2.6.2-intel-2015a-Python-2.7.9.eb index c746104f6f..c8c3ba9720 100644 --- a/easybuild/easyconfigs/r/requests/requests-2.6.2-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/r/requests/requests-2.6.2-intel-2015a-Python-2.7.9.eb @@ -13,7 +13,7 @@ sources = [SOURCELOWER_TAR_GZ] python = 'Python' pythonversion = '2.7.9' -pyshortver = ".".join(pythonversion.split(".")[0:2]) +pyshortver = '.'.join(pythonversion.split('.')[:2]) versionsuffix = '-%s-%s' % (python, pythonversion) @@ -27,4 +27,3 @@ sanity_check_paths = { } moduleclass = 'devel' - -- GitLab From dac9ed1317d25a0ef9bb73f54dcd6d23357698d5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 25 Apr 2015 01:38:53 +0200 Subject: [PATCH 1000/1217] don't include cray-libsci as direct toolchain component --- easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb | 5 ++++- easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb | 5 ++++- easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb | 4 +--- easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb | 4 +--- easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb | 5 ++++- easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb | 5 ++++- 6 files changed, 18 insertions(+), 10 deletions(-) diff --git a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb index f5df8a066a..766d96d756 100644 --- a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb +++ b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb @@ -8,6 +8,9 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-cray module toolchain = {'name': 'dummy', 'version': 'dummy'} -dependencies = [('fftw/3.3.4.0', EXTERNAL_MODULE)] +dependencies = [ + ('PrgEnv-cray/' + version, EXTERNAL_MODULE), # also loads cray-libsci + ('fftw/3.3.4.0', EXTERNAL_MODULE), +] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb index 524d8e18e6..7a2e621e24 100644 --- a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb +++ b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb @@ -8,6 +8,9 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-cray module toolchain = {'name': 'dummy', 'version': 'dummy'} -dependencies = [('fftw/3.3.4.2', EXTERNAL_MODULE)] +dependencies = [ + ('PrgEnv-cray/' + version, EXTERNAL_MODULE), # also loads cray-libsci + ('fftw/3.3.4.2', EXTERNAL_MODULE), +] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb index b105aa0520..b3e7499933 100644 --- a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb @@ -9,9 +9,7 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-gnu module. toolchain = {'name': 'dummy', 'version': 'dummy'} dependencies = [ - ('PrgEnv-gnu/' + version, EXTERNAL_MODULE), - # cray-libsci is intentionally loaded with specifying a version, loaded by PrgEnv-gnu (version is site-specific) - ('cray-libsci', EXTERNAL_MODULE), + ('PrgEnv-gnu/' + version, EXTERNAL_MODULE), # also loads cray-libsci ('fftw/3.3.4.0', EXTERNAL_MODULE), ] diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb index 05afff31a0..4015746894 100644 --- a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb @@ -9,9 +9,7 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-gnu module. toolchain = {'name': 'dummy', 'version': 'dummy'} dependencies = [ - ('PrgEnv-gnu/' + version, EXTERNAL_MODULE), - # cray-libsci is intentionally loaded with specifying a version, loaded by PrgEnv-gnu (version is site-specific) - ('cray-libsci', EXTERNAL_MODULE), # loaded by PrgEnv-gnu + ('PrgEnv-gnu/' + version, EXTERNAL_MODULE), # also loads cray-libsci ('fftw/3.3.4.2', EXTERNAL_MODULE), ] diff --git a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb index 8e4b5fe50e..7c17b80f7e 100644 --- a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb +++ b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb @@ -8,6 +8,9 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-intel modul toolchain = {'name': 'dummy', 'version': 'dummy'} -dependencies = [('fftw/3.3.4.0', EXTERNAL_MODULE)] +dependencies = [ + ('PrgEnv-intel/' + version, EXTERNAL_MODULE), # also loads cray-libsci + ('fftw/3.3.4.0', EXTERNAL_MODULE), +] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb index b460d5e453..edaac85f54 100644 --- a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb +++ b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb @@ -8,6 +8,9 @@ description = """Toolchain using Cray compiler wrapper, using PrgEnv-intel modul toolchain = {'name': 'dummy', 'version': 'dummy'} -dependencies = [('fftw/3.3.4.2', EXTERNAL_MODULE)] +dependencies = [ + ('PrgEnv-intel/' + version, EXTERNAL_MODULE), # also loads cray-libsci + ('fftw/3.3.4.2', EXTERNAL_MODULE), +] moduleclass = 'toolchain' -- GitLab From 0ec82f30b35190fcb0b0c6044892a96c7a9b5865 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 25 Apr 2015 14:21:29 +0200 Subject: [PATCH 1001/1217] add HPL easyconfigs using Cray toolchains --- .../h/HPL/HPL-2.1-CrayCCE-5.1.29.eb | 22 +++++++++++++++++++ .../h/HPL/HPL-2.1-CrayCCE-5.2.25.eb | 22 +++++++++++++++++++ .../h/HPL/HPL-2.1-CrayGNU-5.1.29.eb | 18 +++++++++++++++ .../h/HPL/HPL-2.1-CrayGNU-5.2.25.eb | 18 +++++++++++++++ .../h/HPL/HPL-2.1-CrayIntel-5.1.29.eb | 18 +++++++++++++++ .../h/HPL/HPL-2.1-CrayIntel-5.2.25.eb | 18 +++++++++++++++ .../easyconfigs/h/HPL/HPL-2.1_LINKER-ld.patch | 11 ++++++++++ 7 files changed, 127 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.1.29.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.25.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.1.29.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.1.29.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.25.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1_LINKER-ld.patch diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.1.29.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.1.29.eb new file mode 100644 index 0000000000..a7abc8534e --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.1.29.eb @@ -0,0 +1,22 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'CrayCCE', 'version': '5.1.29'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +patches = [ + # fix Make dependencies, so parallel build also works + 'HPL_parallel-make.patch', + 'HPL-2.1_LINKER-ld.patch', +] + +parallel = 1 + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.25.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.25.eb new file mode 100644 index 0000000000..109c7ddafc --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.25.eb @@ -0,0 +1,22 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'CrayCCE', 'version': '5.2.25'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +patches = [ + # fix Make dependencies, so parallel build also works + 'HPL_parallel-make.patch', + 'HPL-2.1_LINKER-ld.patch', +] + +parallel = 1 + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..806d976659 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.1.29.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..b4acf0c1bc --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.25.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.1.29.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.1.29.eb new file mode 100644 index 0000000000..c8cac688c8 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.1.29.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'CrayIntel', 'version': '5.1.29'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.25.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.25.eb new file mode 100644 index 0000000000..0344d227a5 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.25.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'CrayIntel', 'version': '5.2.25'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1_LINKER-ld.patch b/easybuild/easyconfigs/h/HPL/HPL-2.1_LINKER-ld.patch new file mode 100644 index 0000000000..d0e0a51bc5 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1_LINKER-ld.patch @@ -0,0 +1,11 @@ +--- hpl-2.1/makes/Make.ptest.orig 2015-04-25 13:46:18.668624435 +0200 ++++ hpl-2.1/makes/Make.ptest 2015-04-25 13:47:20.958060830 +0200 +@@ -73,7 +73,7 @@ + ( $(CP) ../HPL.dat $(BINdir) ) + # + dexe.grd: $(HPL_pteobj) $(HPLlib) +- $(LINKER) $(LINKFLAGS) -o $(xhpl) $(HPL_pteobj) $(HPL_LIBS) ++ LINKER=`which ld` $(CC) $(LINKFLAGS) -o $(xhpl) $(HPL_pteobj) $(HPL_LIBS) + $(MAKE) $(BINdir)/HPL.dat + $(TOUCH) dexe.grd + # -- GitLab From e902fa555ec2d11b51bd154740345d2087ea36bc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 25 Apr 2015 14:29:08 +0200 Subject: [PATCH 1002/1217] fix HPL patch + add description --- easybuild/easyconfigs/h/HPL/HPL-2.1_LINKER-ld.patch | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1_LINKER-ld.patch b/easybuild/easyconfigs/h/HPL/HPL-2.1_LINKER-ld.patch index d0e0a51bc5..799444d4e2 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1_LINKER-ld.patch +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1_LINKER-ld.patch @@ -1,3 +1,5 @@ +Cray compiler don't like having $LINKER set to a non-absolute path +author: Kenneth Hoste (HPC-UGent) --- hpl-2.1/makes/Make.ptest.orig 2015-04-25 13:46:18.668624435 +0200 +++ hpl-2.1/makes/Make.ptest 2015-04-25 13:47:20.958060830 +0200 @@ -73,7 +73,7 @@ @@ -5,7 +7,7 @@ # dexe.grd: $(HPL_pteobj) $(HPLlib) - $(LINKER) $(LINKFLAGS) -o $(xhpl) $(HPL_pteobj) $(HPL_LIBS) -+ LINKER=`which ld` $(CC) $(LINKFLAGS) -o $(xhpl) $(HPL_pteobj) $(HPL_LIBS) ++ LINKER=`which ld` $(LINKER) $(LINKFLAGS) -o $(xhpl) $(HPL_pteobj) $(HPL_LIBS) $(MAKE) $(BINdir)/HPL.dat $(TOUCH) dexe.grd # -- GitLab From 77df251fcd68b611bb4e93f021d1452ce83de448 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 26 Apr 2015 16:19:35 +0200 Subject: [PATCH 1003/1217] use proper Bundle easyblock for biodeps/PRACE --- .../easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb | 2 +- easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb | 2 +- .../easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb | 2 +- easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb | 2 +- easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb | 2 +- easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb index 0a0256d97d..428ecbe9cf 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10-extended.eb @@ -10,7 +10,7 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2013-01.html ## -easyblock = "Toolchain" +easyblock = 'Bundle' name = 'biodeps' version = '1.6' diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb index d8d026cace..6fcc534d72 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-goolf-1.4.10.eb @@ -10,7 +10,7 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2013-01.html ## -easyblock = "Toolchain" +easyblock = 'Bundle' name = 'biodeps' version = '1.6' diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb index 878f45a16d..34a00add44 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0-extended.eb @@ -10,7 +10,7 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2013-01.html ## -easyblock = "Toolchain" +easyblock = 'Bundle' name = 'biodeps' version = '1.6' diff --git a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb index 63eda1f427..1091497ff7 100644 --- a/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/biodeps/biodeps-1.6-ictce-5.3.0.eb @@ -10,7 +10,7 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2013-01.html ## -easyblock = "Toolchain" +easyblock = 'Bundle' name = 'biodeps' version = '1.6' diff --git a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb index 061dd6e110..849c3d613e 100644 --- a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb @@ -10,7 +10,7 @@ # http://hpcbios.readthedocs.org/en/latest/ ## -easyblock = "Toolchain" +easyblock = 'Bundle' name = 'PRACE' version = '20130605' diff --git a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb index 84d13bb360..63cc6c8164 100644 --- a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb @@ -10,7 +10,7 @@ # http://hpcbios.readthedocs.org/en/latest/ ## -easyblock = "Toolchain" +easyblock = 'Bundle' name = 'PRACE' version = '20130605' -- GitLab From 7cce6b48a59220705d011495b069f79d1d6f35c9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 26 Apr 2015 16:25:05 +0200 Subject: [PATCH 1004/1217] bump version to 2.1.0 and update release notes --- RELEASE_NOTES | 39 ++++++++++++++++++++++++++++++++++++--- setup.py | 4 ++-- 2 files changed, 38 insertions(+), 5 deletions(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index b504cb01ce..b83a7af107 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -3,16 +3,49 @@ For more detailed information, please see the git log. These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html. -The latest version of easybuild-easyconfig provides 3,344 easyconfig files, for 581 different software packages, -32 different (compiler) toolchains and 6 software bundles. +The latest version of easybuild-easyconfig provides 3,344 easyconfig files, for 608 different software packages, +33 different (compiler) toolchains and 8 software bundles. +v2.1.0 (April 28th 2015) +------------------------ + +- added example easyconfig files for 27 new software packages: + AFNI (#1322, #1521), BCFtools (#1492), getdp (#1518), gmsh (#1518), gtest (#1244), hanythingondemand (#1530), + mawk (#1369), Minimac (#815), Minimac3 (#1502), monty (#1548), Octave (#1563), pbs_python (#1530), pigz (#1036), + Pygments (#1536), pyhull (#1539), pymatgen (#1549), PyQt (#1322, #1521), Ray (#1494), requests (#1536), + seqtk (#1524), SIP (#1322, #1521), S-Lang (#1369), Spark (#1554), spglib (#1549), TINKER (#1465), tmux (#1369), + Xmipp (#1489) +- added easyconfigs for new (Cray-specific) toolchains (#1538): CrayGNU, CrayIntel, CrayCCE + - initially supported software (using CrayGNU toolchains): CP2K, GROMACS, HPL, Python + numpy/scipy, WRF (#1558) +- added new easyconfigs for existing toolchains: goolf/1.5.16, intel/2014.06 +- added additional easyconfigs for various supported software packages: version updates, different toolchains, ... + including GCC v5.1.0, OpenFOAM v2.3.1, R v3.1.3, PETSc/SLEPc v3.5.3, WIEN2k v14.1 +- various other enhancements, including: + - include 'pbr' dependency for 'lockfile' Python extension in Python v2.7.9 easyconfigs + mock/pytz/pandas (#1462, #1540) + - include SQLite as dependency in Python v2.7.9 easyconfigs (#1468) + - set $LD_PRELOAD for Hoard and jemalloc (#1470) + - fix homepage in SCOTCH easyconfigs (#1485) + - adding missing six/ecdsa dependencies for dateutil/paramiko Python packages in Python easyconfigs (#1504, #1505, #1506, #1507, #1508, #1509, #1510) + - enable pic option in expat easyconfigs (#1562) +- various bug fixes, including: + - adding missing zlib dependency in all Tcl easyconfig files (#1344) + - fix homepage in FLUENT easyconfigs (#1472) + - use --with-verbs rather than deprecated --with-openib in OpenMPI configure options (#1511) + - stop relying on OS_NAME constant to specify OS dependencies in OpenMPI easyconfigs (#1512) + - replace use of $root with %(installdir)s to ensure compatibility with module files in Lua syntax (#1532) + - stop relying on $MKLROOT in ROOT easyconfigs (#1537) + - use proper Bundle easyblock for biodeps/PRACE (#1566) v2.0.0 (March 6th 2015) ----------------------- feature + bugfix release - added example easyconfig files for 29 new software packages: - bsoft (#1353), Coot (#1400), Cuby (#1258), DSRC (#1242), Exonerate (#568), fastqz (#1242), FSA (#568), fqzcomp (#1242), GAMESS-US (#1153, #1406), Grep (#1308), Hadoop (#1418), Hoard (#1415), IMB (#1284), ISL (#1389), jemalloc (#1416), libdwarf (#1283), libelf (#1283), MPC (#1310), multitail (#1327), Pmw (#1403), Quip (#1242), rCUDA (#720), SCALCE (#1242), SMALT (#568), STREAM (#1332), worker (#1307), Xerces-C++ (#1370), XQilla (#1370), ZPAQ (#1242) + bsoft (#1353), Coot (#1400), Cuby (#1258), DSRC (#1242), Exonerate (#568), fastqz (#1242), FSA (#568), + fqzcomp (#1242), GAMESS-US (#1153, #1406), Grep (#1308), Hadoop (#1418), Hoard (#1415), IMB (#1284), ISL (#1389), + jemalloc (#1416), libdwarf (#1283), libelf (#1283), MPC (#1310), multitail (#1327), Pmw (#1403), Quip (#1242), + rCUDA (#720), SCALCE (#1242), SMALT (#568), STREAM (#1332), worker (#1307), Xerces-C++ (#1370), XQilla (#1370), + ZPAQ (#1242) - added easyconfigs for new (common) toolchains foss/2015a (#1239), gompi/1.5.16 (#1380), gmvolf/1.7.20 (#1397), goolf/1.7.20 (#1294), intel/2015a (#1238), intel/2015.02 (#1393), iomkl/2015.01 (#1325), iomkl/2015.02 (#1401) - added new software bundle: Autotools (#1385) diff --git a/setup.py b/setup.py index e23ed2d782..5b55ee3e55 100644 --- a/setup.py +++ b/setup.py @@ -1,5 +1,5 @@ ## -# Copyright 2012-2013 Ghent University +# Copyright 2012-2015 Ghent University # # This file is part of EasyBuild, # originally created by the HPC team of Ghent University (http://ugent.be/hpc/en), @@ -41,7 +41,7 @@ from distutils import log # note: release candidates should be versioned as a pre-release, e.g. "1.1rc1" # 1.1-rc1 would indicate a post-release, i.e., and update of 1.1, so beware! -VERSION = "2.1.0dev" +VERSION = '2.1.0' API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From 91460c6b94ed03715d96d93760f19ee04974fcca Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 26 Apr 2015 16:52:27 +0200 Subject: [PATCH 1005/1217] add easyconfig for WRF + deps with CrayGNU --- .../j/JasPer/JasPer-1.900.1-CrayGNU-5.1.29.eb | 21 ++++++++++ .../t/tcsh/tcsh-6.18.01-CrayGNU-5.1.29.eb | 39 ++++++++++++++++++ .../w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb | 41 +++++++++++++++++++ 3 files changed, 101 insertions(+) create mode 100644 easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.1.29.eb create mode 100644 easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.1.29.eb create mode 100644 easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..feca7c584a --- /dev/null +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.1.29.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'JasPer' +version = '1.900.1' + +homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' +description = """The JasPer Project is an open-source initiative to provide a free + software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_ZIP] +source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] + +sanity_check_paths = { + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.1.29.eb new file mode 100644 index 0000000000..6245093966 --- /dev/null +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.1.29.eb @@ -0,0 +1,39 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit +# Authors:: Valentin Plugaru +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html +## +easyblock = 'ConfigureMake' + +name = 'tcsh' +version = '6.18.01' + +homepage = 'http://www.tcsh.org' +description = """Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). + It is a command language interpreter usable both as an interactive login shell and a shell script command + processor. It includes a command-line editor, programmable word completion, spelling correction, a history + mechanism, job control and a C-like syntax.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'shared': True, 'dynamic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'ftp://ftp.astron.com/pub/%(namelower)s', + 'ftp://ftp.astron.com/pub/%(namelower)s/old', +] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/tcsh"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb new file mode 100644 index 0000000000..3806e63de1 --- /dev/null +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb @@ -0,0 +1,41 @@ +name = 'WRF' +version = '3.6.1' + +homepage = 'http://www.wrf-model.org' +description = """The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale + numerical weather prediction system designed to serve both operational forecasting and atmospheric + research needs.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 + +sources = ['%(name)sV%(version)s.TAR.gz'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] + +# csh is used by WRF install scripts +builddependencies = [('tcsh', '6.18.01')] + +dependencies = [ + ('JasPer', '1.900.1'), + ('cray-netcdf/4.3.2', EXTERNAL_MODULE), + ('cray-hdf5-parallel/1.8.13', EXTERNAL_MODULE), +] + +patches = [ + 'WRF_parallel_build_fix.patch', + 'WRF-3.6.1_known_problems.patch', + 'WRF_tests_limit-runtimes.patch', +] + +# limit parallel build to 20 +maxparallel = 20 + +buildtype = "dmpar" +versionsuffix = '-%s' % buildtype + +runtest = False + +moduleclass = 'geo' -- GitLab From b8d75d3267feaad5e1e28db4577e8f1d383b3be1 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Date: Sun, 26 Apr 2015 17:18:16 +0200 Subject: [PATCH 1006/1217] added http://www.bioconductor.org/packages/release/bioc/src/contrib/ as download url for bioconductor packages --- easybuild/easyconfigs/r/R/R-2.15.2-goalf-1.1.0-no-OFED.eb | 4 +++- easybuild/easyconfigs/r/R/R-2.15.2-goolf-1.4.10.eb | 4 +++- easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.10.eb | 4 +++- easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.6.eb | 4 +++- easybuild/easyconfigs/r/R/R-2.15.2-ictce-5.3.0.eb | 4 +++- easybuild/easyconfigs/r/R/R-2.15.3-goalf-1.1.0-no-OFED.eb | 4 +++- easybuild/easyconfigs/r/R/R-2.15.3-goolf-1.4.10.eb | 4 +++- easybuild/easyconfigs/r/R/R-2.15.3-ictce-4.1.13.eb | 4 +++- easybuild/easyconfigs/r/R/R-2.15.3-ictce-5.3.0.eb | 4 +++- easybuild/easyconfigs/r/R/R-3.0.2-goolf-1.4.10.eb | 4 +++- easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.3.0.eb | 4 +++- easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.5.0.eb | 4 +++- easybuild/easyconfigs/r/R/R-3.1.0-ictce-5.5.0.eb | 4 +++- easybuild/easyconfigs/r/R/R-3.1.1-intel-2014b.eb | 4 +++- easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb | 1 + easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb | 1 + easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb | 1 + 17 files changed, 45 insertions(+), 14 deletions(-) diff --git a/easybuild/easyconfigs/r/R/R-2.15.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/r/R/R-2.15.2-goalf-1.1.0-no-OFED.eb index 8468c6029d..d91d0ca1fd 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.2-goalf-1.1.0-no-OFED.eb @@ -41,7 +41,9 @@ ext_options = { } # Bioconductor packages have a different download url bioconductor_options = { - 'source_urls': ['http://www.bioconductor.org/packages/2.11/bioc/src/contrib/'], + 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.11/bioc/src/contrib/'], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-2.15.2-goolf-1.4.10.eb b/easybuild/easyconfigs/r/R/R-2.15.2-goolf-1.4.10.eb index 84d3f3e99e..517c6d157a 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.2-goolf-1.4.10.eb @@ -41,7 +41,9 @@ ext_options = { } # Bioconductor packages have a different download url bioconductor_options = { - 'source_urls': ['http://www.bioconductor.org/packages/2.11/bioc/src/contrib/'], + 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.11/bioc/src/contrib/'], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.10.eb b/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.10.eb index 70126d1ce6..b2152142eb 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.10.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.10.eb @@ -41,7 +41,9 @@ ext_options = { } # Bioconductor packages have a different download url bioconductor_options = { - 'source_urls': ['http://www.bioconductor.org/packages/2.11/bioc/src/contrib/'], + 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.11/bioc/src/contrib/'], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.6.eb b/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.6.eb index 3a90cc17eb..9414cfc682 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.6.eb @@ -41,7 +41,9 @@ ext_options = { } # Bioconductor packages have a different download url bioconductor_options = { - 'source_urls': ['http://www.bioconductor.org/packages/2.11/bioc/src/contrib/'], + 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.11/bioc/src/contrib/'], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-2.15.2-ictce-5.3.0.eb b/easybuild/easyconfigs/r/R/R-2.15.2-ictce-5.3.0.eb index 201aa6b636..4b3f70cab0 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.2-ictce-5.3.0.eb @@ -41,7 +41,9 @@ ext_options = { } # Bioconductor packages have a different download url bioconductor_options = { - 'source_urls': ['http://www.bioconductor.org/packages/2.11/bioc/src/contrib/'], + 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.11/bioc/src/contrib/'], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-2.15.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/r/R/R-2.15.3-goalf-1.1.0-no-OFED.eb index 65f22fa5a8..4434fbdf2a 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.3-goalf-1.1.0-no-OFED.eb @@ -41,7 +41,9 @@ ext_options = { } # Bioconductor packages have a different download url bioconductor_options = { - 'source_urls': ['http://www.bioconductor.org/packages/2.12/bioc/src/contrib/'], + 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.12/bioc/src/contrib/'], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-2.15.3-goolf-1.4.10.eb b/easybuild/easyconfigs/r/R/R-2.15.3-goolf-1.4.10.eb index 2672165c50..174451bf44 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.3-goolf-1.4.10.eb @@ -41,7 +41,9 @@ ext_options = { } # Bioconductor packages have a different download url bioconductor_options = { - 'source_urls': ['http://www.bioconductor.org/packages/2.12/bioc/src/contrib/'], + 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.12/bioc/src/contrib/'], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-2.15.3-ictce-4.1.13.eb b/easybuild/easyconfigs/r/R/R-2.15.3-ictce-4.1.13.eb index 2f2b2a553e..cc29570d01 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.3-ictce-4.1.13.eb @@ -41,7 +41,9 @@ ext_options = { } # Bioconductor packages have a different download url bioconductor_options = { - 'source_urls': ['http://www.bioconductor.org/packages/2.12/bioc/src/contrib/'], + 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.12/bioc/src/contrib/'], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-2.15.3-ictce-5.3.0.eb b/easybuild/easyconfigs/r/R/R-2.15.3-ictce-5.3.0.eb index 2d510cfe36..4b201ba947 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.3-ictce-5.3.0.eb @@ -41,7 +41,9 @@ ext_options = { } # Bioconductor packages have a different download url bioconductor_options = { - 'source_urls': ['http://www.bioconductor.org/packages/2.12/bioc/src/contrib/'], + 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.12/bioc/src/contrib/'], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-3.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/r/R/R-3.0.2-goolf-1.4.10.eb index 3bc73c713b..5280f5e5c7 100644 --- a/easybuild/easyconfigs/r/R/R-3.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/R/R-3.0.2-goolf-1.4.10.eb @@ -41,7 +41,9 @@ ext_options = { } # Bioconductor packages have a different download url bioconductor_options = { - 'source_urls': ['http://www.bioconductor.org/packages/2.13/bioc/src/contrib/'], + 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.13/bioc/src/contrib/'], 'source_tmpl': name_tmpl, } diff --git a/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.3.0.eb index 580cc3effd..8fababc358 100644 --- a/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.3.0.eb @@ -41,7 +41,9 @@ ext_options = { } # Bioconductor packages have a different download url bioconductor_options = { - 'source_urls': ['http://www.bioconductor.org/packages/2.13/bioc/src/contrib/'], + 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.13/bioc/src/contrib/'], 'source_tmpl': name_tmpl, } diff --git a/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.5.0.eb b/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.5.0.eb index 1bda6f96bc..549134c6cc 100644 --- a/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.5.0.eb @@ -41,7 +41,9 @@ ext_options = { } # Bioconductor packages have a different download url bioconductor_options = { - 'source_urls': ['http://www.bioconductor.org/packages/2.13/bioc/src/contrib/'], + 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.13/bioc/src/contrib/'], 'source_tmpl': name_tmpl, } diff --git a/easybuild/easyconfigs/r/R/R-3.1.0-ictce-5.5.0.eb b/easybuild/easyconfigs/r/R/R-3.1.0-ictce-5.5.0.eb index ba677bcf6d..e7c9c708cc 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.0-ictce-5.5.0.eb @@ -31,7 +31,9 @@ ext_options = { } # Bioconductor packages have a different download url bioconductor_options = { - 'source_urls': ['http://www.bioconductor.org/packages/2.14/bioc/src/contrib/'], + 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.14/bioc/src/contrib/'], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-3.1.1-intel-2014b.eb b/easybuild/easyconfigs/r/R/R-3.1.1-intel-2014b.eb index 37633fc50a..91ba061891 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.1-intel-2014b.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.1-intel-2014b.eb @@ -32,7 +32,9 @@ ext_options = { } # Bioconductor packages have a different download url bioconductor_options = { - 'source_urls': ['http://www.bioconductor.org/packages/2.14/bioc/src/contrib/'], + 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.14/bioc/src/contrib/'], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb index e60a4bb6fd..d92fd5ff79 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb @@ -34,6 +34,7 @@ ext_options = { # Bioconductor packages have a different download url bioconductor_options = { 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb b/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb index a73e438a8c..d111c454b9 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb @@ -34,6 +34,7 @@ ext_options = { # Bioconductor packages have a different download url bioconductor_options = { 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb index 99a39db56a..a5cec405ac 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb @@ -34,6 +34,7 @@ ext_options = { # Bioconductor packages have a different download url bioconductor_options = { 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', -- GitLab From 87026420edafa0ed4ca97bfc48ff6d1700adca52 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Date: Sun, 26 Apr 2015 17:23:49 +0200 Subject: [PATCH 1007/1217] updated urls for data and experiments data --- easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb | 2 ++ easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb | 2 ++ easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb | 2 ++ 3 files changed, 6 insertions(+) diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb index d92fd5ff79..bcd67f42d0 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb @@ -35,6 +35,8 @@ ext_options = { bioconductor_options = { 'source_urls': [ 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/release/data/annotation/src/contrib/', + 'http://www.bioconductor.org/packages/release/data/experiment/src/contrib/', 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb b/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb index d111c454b9..467f0009f8 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.2-goolf-1.5.14.eb @@ -35,6 +35,8 @@ ext_options = { bioconductor_options = { 'source_urls': [ 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/release/data/annotation/src/contrib/', + 'http://www.bioconductor.org/packages/release/data/experiment/src/contrib/', 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb index a5cec405ac..813bbd8f5d 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.2-intel-2015a.eb @@ -35,6 +35,8 @@ ext_options = { bioconductor_options = { 'source_urls': [ 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/release/data/annotation/src/contrib/', + 'http://www.bioconductor.org/packages/release/data/experiment/src/contrib/', 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', -- GitLab From 0c375816933c4bc1edb21de240aff26d2fb6a7e4 Mon Sep 17 00:00:00 2001 From: Pablo Escobar Date: Sun, 26 Apr 2015 17:33:48 +0200 Subject: [PATCH 1008/1217] added 3.1.3 easyconfigs --- .../easyconfigs/r/R/R-3.1.3-foss-2015a.eb | 384 ++++++++++++++++++ .../easyconfigs/r/R/R-3.1.3-intel-2015a.eb | 383 +++++++++++++++++ 2 files changed, 767 insertions(+) create mode 100644 easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb create mode 100644 easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb diff --git a/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb new file mode 100644 index 0000000000..ad11c875f8 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb @@ -0,0 +1,384 @@ +name = 'R' +version = '3.1.3' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.16'), # for plotting in R + ('libjpeg-turbo', '1.4.0'), # for plottting in R + ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it +] + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.r-project.org/src/contrib/', # current version of packages + 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': name_tmpl, +} +# Bioconductor packages have a different download url +bioconductor_options = { + 'source_urls': [ + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/release/data/annotation/src/contrib/', + 'http://www.bioconductor.org/packages/release/data/experiment/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', + 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', + ], + 'source_tmpl': name_tmpl, +} + +# !! order of packages is important !! +# packages updated on January 8th 2015 +exts_list = [ + # default libraries, only here to sanity check their presence + 'base', + 'datasets', + 'graphics', + 'grDevices', + 'grid', + 'methods', + 'splines', + 'stats', + 'stats4', + 'tools', + 'utils', + # non-standard libraries, should be specified with fixed versions! + ('Rmpi', '0.6-5', dict(ext_options.items() + [('patches', ['Rmpi-0.6-5_impi5.patch'])])), + ('abind', '1.4-3', ext_options), + ('magic', '1.5-6', ext_options), + ('geometry', '0.3-5', dict(ext_options.items() + [('patches', ['geometry-0.3-4-icc.patch'])])), + ('bit', '1.1-12', ext_options), + ('filehash', '2.2-2', ext_options), + ('ff', '2.2-13', ext_options), + ('bnlearn', '3.7.1', ext_options), + ('bootstrap', '2015.2', ext_options), + ('combinat', '0.0-8', ext_options), + ('deal', '1.2-37', ext_options), + ('fdrtool', '1.2.14', ext_options), + ('formatR', '1.0', ext_options), + ('gtools', '3.4.1', ext_options), + ('gdata', '2.13.3', ext_options), + ('GSA', '1.03', ext_options), + ('highr', '0.4', ext_options), + ('infotheo', '1.2.0', ext_options), + ('lars', '1.2', ext_options), + ('lazy', '1.2-15', ext_options), + ('kernlab', '0.9-20', ext_options), + ('mime', '0.2', ext_options), + ('markdown', '0.7.4', ext_options), + ('mlbench', '2.1-1', ext_options), + ('NLP', '0.1-6', ext_options), + ('mclust', '4.4', ext_options), + ('RANN', '2.4.1', ext_options), + ('rmeta', '2.16', ext_options), + ('segmented', '0.5-1.1', ext_options), + ('som', '0.3-5', ext_options), + ('SuppDists', '1.1-9.1', ext_options), + ('stabledist', '0.6-6', ext_options), + ('survivalROC', '1.0.3', ext_options), + ('pspline', '1.0-16', ext_options), + ('timeDate', '3012.100', ext_options), + ('longmemo', '1.0-0', ext_options), + ('ADGofTest', '0.3', ext_options), + ('ade4', '1.6-2', ext_options), + ('AlgDesign', '1.1-7.3', ext_options), + ('base64enc', '0.1-2', ext_options), + ('BH', '1.55.0-3', ext_options), + ('brew', '1.0-6', ext_options), + ('Brobdingnag', '1.2-4', ext_options), + ('corpcor', '1.6.7', ext_options), + ('longitudinal', '1.1.11', ext_options), + ('checkmate', '1.5.2', ext_options), + ('cubature', '1.1-2', ext_options), + ('DEoptimR', '1.0-2', ext_options), + ('digest', '0.6.8', ext_options), + ('fastmatch', '1.0-4', ext_options), + ('ffbase', '0.11.3', ext_options), + ('iterators', '1.0.7', ext_options), + ('maps', '2.3-9', ext_options), + ('nnls', '1.4', ext_options), + ('sendmailR', '1.2-1', ext_options), + ('spam', '1.0-1', ext_options), + ('subplex', '1.1-4', ext_options), + ('stringr', '0.6.2', ext_options), + ('evaluate', '0.5.5', ext_options), + ('logspline', '2.1.5', ext_options), + ('ncbit', '2013.03.29', ext_options), + ('permute', '0.8-3', 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('htmltools', '0.2.6', ext_options), + ('RJSONIO', '1.3-0', ext_options), + ('caTools', '1.17.1', ext_options), + ('gplots', '2.16.0', ext_options), + ('ROCR', '1.0-5', ext_options), + ('httpuv', '1.3.2', ext_options), + ('R6', '2.0.1', ext_options), + ('shiny', '0.11.1', ext_options), + ('adegenet', '1.4-2', ext_options), + ('phylobase', '0.6.8', ext_options), + ('adephylo', '1.1-6', ext_options), + ('animation', '2.3', ext_options), + ('bigmemory.sri', '0.1.3', ext_options), + ('bigmemory', '4.4.6', ext_options), + ('calibrate', '1.7.2', ext_options), + ('clusterGeneration', '1.3.4', ext_options), + ('raster', '2.3-33', ext_options), + ('dismo', '1.0-12', ext_options), + ('expm', '0.99-1.1', ext_options), + ('extrafontdb', '1.0', ext_options), + ('Rttf2pt1', '1.3.3', ext_options), + ('extrafont', '0.17', ext_options), + ('fields', '8.2-1', ext_options), + ('shapefiles', '0.7', ext_options), + ('fossil', '0.3.7', ext_options), + ('geiger', '2.0.3', ext_options), + ('glmnet', '1.9-8', ext_options), + ('labdsv', '1.6-1', ext_options), + ('MatrixModels', '0.4-0', ext_options), + ('stabs', '0.5-1', ext_options), + ('mboost', '2.4-2', ext_options), + ('msm', '1.5', ext_options), + ('nor1mix', '1.2-0', ext_options), + ('np', '0.60-2', ext_options), + ('polynom', '1.3-8', ext_options), + ('polspline', '1.1.9', ext_options), + ('TH.data', '1.0-6', ext_options), + ('multcomp', '1.4-0', ext_options), + ('gridExtra', '0.9.1', ext_options), + ('rms', '4.3-0', ext_options), + ('RWekajars', '3.7.12-1', ext_options), + ('RWeka', '0.4-24', ext_options), + ('slam', '0.1-32', ext_options), + ('tm', '0.6', ext_options), + ('TraMineR', '1.8-9', ext_options), + ('chemometrics', '1.3.9', ext_options), + ('FNN', '1.1', ext_options), + ('ipred', '0.9-4', ext_options), + ('knitr', '1.9', ext_options), + ('statmod', '1.4.20', ext_options), + ('miscTools', '0.6-16', ext_options), + ('maxLik', '1.2-4', ext_options), + ('mlogit', '0.2-4', ext_options), + ('getopt', '1.20.0', ext_options), + ('gsalib', '2.1', ext_options), + ('reshape', '0.8.5', ext_options), + ('optparse', '1.3.0', ext_options), + ('klaR', '0.6-12', ext_options), + ('neuRosim', '0.2-12', ext_options), + ('affyio', '1.34.0', bioconductor_options), + ('BiocInstaller', '1.16.2', bioconductor_options), + ('preprocessCore', '1.28.0', bioconductor_options), + ('affy', '1.44.0', bioconductor_options), + ('GO.db', '3.0.0', bioconductor_options), + ('limma', '3.22.7', bioconductor_options), + ('RBGL', '1.42.0', bioconductor_options), + ('org.Hs.eg.db', '3.0.0', bioconductor_options), + ('AnnotationForge', '1.8.2', bioconductor_options), + ('KEGG.db', '3.0.0', bioconductor_options), + ('annaffy', '1.38.0', bioconductor_options), + ('gcrma', '2.38.0', bioconductor_options), + ('oligoClasses', '1.28.0', bioconductor_options), + ('edgeR', '3.8.6', bioconductor_options), + ('PFAM.db', '3.0.0', bioconductor_options), + ('locfit', '1.5-9.1', ext_options), + ('GGally', '0.5.0', ext_options), + ('baySeq', '2.0.50', bioconductor_options), + ('beanplot', '1.2', ext_options), + ('clValid', '0.6-6', ext_options), + ('qvalue', '1.43.0', bioconductor_options), + ('impute', '1.40.0', bioconductor_options), + ('matrixStats', '0.14.0', ext_options), + ('samr', '2.0', ext_options), + ('DEGseq', '1.20.0', bioconductor_options), + ('DiscriMiner', '0.1-29', ext_options), + ('ellipse', '0.3-8', ext_options), + ('leaps', '2.9', ext_options), + ('flashClust', '1.01-2', ext_options), + ('FactoMineR', '1.29', ext_options), + ('modeltools', '0.2-21', ext_options), + ('flexclust', '1.3-4', ext_options), + ('flexmix', '2.3-13', ext_options), + ('prabclus', '2.2-6', ext_options), + ('diptest', '0.75-6', ext_options), + ('trimcluster', '0.1-2', ext_options), + ('fpc', '2.1-9', ext_options), + ('BiasedUrn', '1.06.1', ext_options), + ('hgu133plus2.db', '3.0.0', bioconductor_options), + ('TeachingDemos', '2.9', ext_options), + ('jsonlite', '0.9.14', ext_options), + ('kohonen', '2.0.15', ext_options), + ('base64', '1.1', ext_options), + ('illuminaio', '0.8.0', bioconductor_options), + ('registry', '0.2', ext_options), + ('pkgmaker', '0.22', ext_options), + ('rngtools', '1.2.4', ext_options), + ('doRNG', '1.6', ext_options), + ('bumphunter', '1.6.0', bioconductor_options), + ('multtest', '2.22.0', bioconductor_options), + ('siggenes', '1.40.0', bioconductor_options), + ('nleqslv', '2.6', ext_options), + ('DynDoc', '1.44.0', bioconductor_options), + ('genoset', '1.20.0', bioconductor_options), + ('RGCCA', '2.0', ext_options), + ('pheatmap', '1.0.2', ext_options), + ('multtest', '2.22.0', bioconductor_options), + ('NOISeq', '2.8.0', bioconductor_options), + ('openxlsx', '2.4.0', ext_options), + ('Rgraphviz', '2.10.0', bioconductor_options), + ('pvclust', '1.3-2', ext_options), + ('RCircos', '1.1.2', ext_options), + ('reshape', '0.8.5', ext_options), + ('RNASeqPower', '1.6.0', bioconductor_options), + ('VennDiagram', '1.6.9', ext_options), + ('xlsxjars', '0.6.1', ext_options), + ('xlsx', '0.5.7', ext_options), + ('Rsubread', '1.16.1', bioconductor_options), +] + +moduleclass = 'lang' -- GitLab From 4c44a3dead34859d7935cd66ca44050fa455cf1b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 26 Apr 2015 20:26:47 +0200 Subject: [PATCH 1009/1217] include PR #1568 --- RELEASE_NOTES | 1 + 1 file changed, 1 insertion(+) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index b83a7af107..2282d108e0 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -27,6 +27,7 @@ v2.1.0 (April 28th 2015) - fix homepage in SCOTCH easyconfigs (#1485) - adding missing six/ecdsa dependencies for dateutil/paramiko Python packages in Python easyconfigs (#1504, #1505, #1506, #1507, #1508, #1509, #1510) - enable pic option in expat easyconfigs (#1562) + - extend list of source URLs for Bioconductor packages in R easyconfigs to include 'release' source URLs (#1568) - various bug fixes, including: - adding missing zlib dependency in all Tcl easyconfig files (#1344) - fix homepage in FLUENT easyconfigs (#1472) -- GitLab From 17301a204cb5c1c0e10ee7e914b8a47cf8d1b3ae Mon Sep 17 00:00:00 2001 From: Generic user for software management Date: Sun, 26 Apr 2015 20:34:29 +0200 Subject: [PATCH 1010/1217] R-3.2.0-goolf-1.7.20-bare.eb --- .../libjpeg-turbo-1.4.0-goolf-1.7.20.eb | 24 +++++++++++++++++ .../l/libpng/libpng-1.6.16-goolf-1.7.20.eb | 19 +++++++++++++ .../libreadline-6.3-goolf-1.7.20.eb | 27 +++++++++++++++++++ .../n/ncurses/ncurses-5.9-goolf-1.7.20.eb | 15 +++++++++++ .../r/R/R-3.2.0-goolf-1.7.20-bare.eb | 27 +++++++++++++++++++ 5 files changed, 112 insertions(+) create mode 100644 easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.7.20.eb create mode 100644 easybuild/easyconfigs/l/libpng/libpng-1.6.16-goolf-1.7.20.eb create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.7.20.eb create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-5.9-goolf-1.7.20.eb create mode 100644 easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.7.20.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.7.20.eb new file mode 100644 index 0000000000..4197b7c635 --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.7.20.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.4.0' + +homepage = 'http://sourceforge.net/libjpeg-turbo/' +description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG +compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('NASM', '2.11.06'), +] + +configopts = "--with-jpeg8" +runtest = "test" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.16-goolf-1.7.20.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.16-goolf-1.7.20.eb new file mode 100644 index 0000000000..4132ab6f67 --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.16-goolf-1.7.20.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.16' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.7.20.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.7.20.eb new file mode 100644 index 0000000000..5449121e0b --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.7.20.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-goolf-1.7.20.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-goolf-1.7.20.eb new file mode 100644 index 0000000000..a62ac8f668 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-goolf-1.7.20.eb @@ -0,0 +1,15 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, +and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and +function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb b/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb new file mode 100644 index 0000000000..d1098337a7 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb @@ -0,0 +1,27 @@ +name = 'R' +version = '3.2.0' +versionsuffix = '-bare' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.16'), # for plotting in R + ('libjpeg-turbo', '1.4.0'), # for plottting in R + ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it +] + +exts_list = [] + +moduleclass = 'lang' -- GitLab From c5624f2f880159ee7d66a5dc2ff4e05b41306e5f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 26 Apr 2015 20:53:43 +0200 Subject: [PATCH 1011/1217] fix tests w.r.t. external modules and Cray toolchains --- test/easyconfigs/easyconfigs.py | 20 +++++++++++++++++++- 1 file changed, 19 insertions(+), 1 deletion(-) diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index 5d7ca77279..4516a938ed 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -50,6 +50,7 @@ from easybuild.framework.easyconfig.tools import dep_graph, get_paths_for, proce from easybuild.tools import config from easybuild.tools.module_naming_scheme import GENERAL_CLASS from easybuild.tools.module_naming_scheme.utilities import det_full_ec_version +from easybuild.tools.modules import modules_tool from easybuild.tools.robot import resolve_dependencies @@ -66,7 +67,9 @@ class EasyConfigTest(TestCase): config.init(eb_go.options, eb_go.get_options_by_section('config')) build_options = { 'check_osdeps': False, + 'external_modules_metadata': {}, 'force': True, + 'optarch': 'test', 'robot_path': get_paths_for("easyconfigs")[0], 'suffix_modules_path': GENERAL_CLASS, 'valid_module_classes': config.module_classes(), @@ -75,8 +78,14 @@ class EasyConfigTest(TestCase): config.init_build_options(build_options=build_options) config.set_tmpdir() del eb_go - + + # mock 'exist' and 'load' methods of modules tool, which are used for 'craype' external module + modtool = modules_tool() + modtool.exist = lambda m: [True]*len(m) + modtool.load = lambda m: True + log = fancylogger.getLogger("EasyConfigTest", fname=False) + # make sure a logger is present for main main._log = log ordered_specs = None @@ -93,6 +102,15 @@ class EasyConfigTest(TestCase): for spec in specs: self.parsed_easyconfigs.extend(process_easyconfig(spec)) + # filter out external modules + for ec in self.parsed_easyconfigs: + for dep in ec['dependencies'][:]: + if dep.get('external_module', False): + ec['dependencies'].remove(dep) + for dep in ec['unresolved_deps'][:]: + if dep.get('external_module', False): + ec['unresolved_deps'].remove(dep) + self.ordered_specs = resolve_dependencies(self.parsed_easyconfigs) def test_dep_graph(self): -- GitLab From d6b1c83d0a70d80bccfe1a787b99d0cb18319df8 Mon Sep 17 00:00:00 2001 From: Generic user for software management Date: Sun, 26 Apr 2015 21:00:51 +0200 Subject: [PATCH 1012/1217] added NASM-2.11.06-goolf-1.7.20.eb --- .../n/NASM/NASM-2.11.06-goolf-1.7.20.eb | 30 +++++++++++++++++++ 1 file changed, 30 insertions(+) create mode 100644 easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.7.20.eb diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.7.20.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.7.20.eb new file mode 100644 index 0000000000..8ece8f5082 --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.06-goolf-1.7.20.eb @@ -0,0 +1,30 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.11.06' + +homepage = 'http://www.nasm.us/' +description = """NASM: General-purpose x86 assembler""" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' -- GitLab From e8aa3700033275de4681eee55e4d20cd1271756f Mon Sep 17 00:00:00 2001 From: Generic user for software management Date: Sun, 26 Apr 2015 21:01:47 +0200 Subject: [PATCH 1013/1217] changed java version to latest in 1.7.x branch --- easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb b/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb index d1098337a7..764ce77013 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb @@ -19,7 +19,7 @@ dependencies = [ ('ncurses', '5.9'), ('libpng', '1.6.16'), # for plotting in R ('libjpeg-turbo', '1.4.0'), # for plottting in R - ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it + ('Java', '1.7.0_79', '', True), # Java bindings are built if Java is found, might as well provide it ] exts_list = [] -- GitLab From bc48592638f68af71e4c9d2acd19e9c0e95d056d Mon Sep 17 00:00:00 2001 From: Generic user for software management Date: Sun, 26 Apr 2015 21:07:12 +0200 Subject: [PATCH 1014/1217] added Java-1.7.0_80.eb --- easybuild/easyconfigs/j/Java/Java-1.7.0_80.eb | 15 +++++++++++++++ 1 file changed, 15 insertions(+) create mode 100644 easybuild/easyconfigs/j/Java/Java-1.7.0_80.eb diff --git a/easybuild/easyconfigs/j/Java/Java-1.7.0_80.eb b/easybuild/easyconfigs/j/Java/Java-1.7.0_80.eb new file mode 100644 index 0000000000..9acb602fa1 --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.7.0_80.eb @@ -0,0 +1,15 @@ +name = 'Java' +version = '1.7.0_80' + +homepage = 'http://java.com/' +description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] + +moduleclass = 'lang' -- GitLab From 31327acc8bc46fae1fea637a2e1f68ad169273e5 Mon Sep 17 00:00:00 2001 From: Generic user for software management Date: Sun, 26 Apr 2015 21:23:43 +0200 Subject: [PATCH 1015/1217] bump java to 1.7.80 --- easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb b/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb index 764ce77013..ed4f2cd8f4 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb @@ -19,7 +19,7 @@ dependencies = [ ('ncurses', '5.9'), ('libpng', '1.6.16'), # for plotting in R ('libjpeg-turbo', '1.4.0'), # for plottting in R - ('Java', '1.7.0_79', '', True), # Java bindings are built if Java is found, might as well provide it + ('Java', '1.7.0_80', '', True), # Java bindings are built if Java is found, might as well provide it ] exts_list = [] -- GitLab From faa0b4476b12d727d2affcbff8243cb151e7458e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 26 Apr 2015 22:24:55 +0200 Subject: [PATCH 1016/1217] {lang}[foss,intel/2015a] R 3.2.0 -bare --- .../r/R/R-3.2.0-foss-2015a-bare.eb | 27 +++++++++++++++++++ .../r/R/R-3.2.0-intel-2015a-bare.eb | 27 +++++++++++++++++++ 2 files changed, 54 insertions(+) create mode 100644 easybuild/easyconfigs/r/R/R-3.2.0-foss-2015a-bare.eb create mode 100644 easybuild/easyconfigs/r/R/R-3.2.0-intel-2015a-bare.eb diff --git a/easybuild/easyconfigs/r/R/R-3.2.0-foss-2015a-bare.eb b/easybuild/easyconfigs/r/R/R-3.2.0-foss-2015a-bare.eb new file mode 100644 index 0000000000..db8d624ca1 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.2.0-foss-2015a-bare.eb @@ -0,0 +1,27 @@ +name = 'R' +version = '3.2.0' +versionsuffix = '-bare' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.16'), # for plotting in R + ('libjpeg-turbo', '1.4.0'), # for plottting in R + ('Java', '1.7.0_80', '', True), # Java bindings are built if Java is found, might as well provide it +] + +exts_list = [] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.2.0-intel-2015a-bare.eb b/easybuild/easyconfigs/r/R/R-3.2.0-intel-2015a-bare.eb new file mode 100644 index 0000000000..db8d624ca1 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.2.0-intel-2015a-bare.eb @@ -0,0 +1,27 @@ +name = 'R' +version = '3.2.0' +versionsuffix = '-bare' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.16'), # for plotting in R + ('libjpeg-turbo', '1.4.0'), # for plottting in R + ('Java', '1.7.0_80', '', True), # Java bindings are built if Java is found, might as well provide it +] + +exts_list = [] + +moduleclass = 'lang' -- GitLab From 375755453436b11f29fc3335ce3279a32af04bcb Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 26 Apr 2015 22:30:36 +0200 Subject: [PATCH 1017/1217] also mention R v3.2.0 --- RELEASE_NOTES | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 2282d108e0..04333d14ff 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -19,7 +19,7 @@ v2.1.0 (April 28th 2015) - initially supported software (using CrayGNU toolchains): CP2K, GROMACS, HPL, Python + numpy/scipy, WRF (#1558) - added new easyconfigs for existing toolchains: goolf/1.5.16, intel/2014.06 - added additional easyconfigs for various supported software packages: version updates, different toolchains, ... - including GCC v5.1.0, OpenFOAM v2.3.1, R v3.1.3, PETSc/SLEPc v3.5.3, WIEN2k v14.1 + including GCC v5.1.0, OpenFOAM v2.3.1, R v3.1.3 and v3.2.0, PETSc/SLEPc v3.5.3, WIEN2k v14.1 - various other enhancements, including: - include 'pbr' dependency for 'lockfile' Python extension in Python v2.7.9 easyconfigs + mock/pytz/pandas (#1462, #1540) - include SQLite as dependency in Python v2.7.9 easyconfigs (#1468) -- GitLab From 2dfba5a330f4b2a07a42565163342b800b570ba3 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 26 Apr 2015 22:36:55 +0200 Subject: [PATCH 1018/1217] fix toolchain in R easyconfig --- easybuild/easyconfigs/r/R/R-3.2.0-foss-2015a-bare.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R/R-3.2.0-foss-2015a-bare.eb b/easybuild/easyconfigs/r/R/R-3.2.0-foss-2015a-bare.eb index db8d624ca1..84e71410fa 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.0-foss-2015a-bare.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.0-foss-2015a-bare.eb @@ -5,7 +5,7 @@ versionsuffix = '-bare' homepage = 'http://www.r-project.org/' description = """R is a free software environment for statistical computing and graphics.""" -toolchain = {'name': 'intel', 'version': '2015a'} +toolchain = {'name': 'foss', 'version': '2015a'} sources = [SOURCE_TAR_GZ] source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] -- GitLab From cf2b5fee068415b589f0d9527298265dd6061607 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 27 Apr 2015 09:07:35 +0200 Subject: [PATCH 1019/1217] enable retain_all_deps when resolving dependencies in easyconfig tests --- test/easyconfigs/easyconfigs.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index 4516a938ed..838f4a2957 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -111,7 +111,7 @@ class EasyConfigTest(TestCase): if dep.get('external_module', False): ec['unresolved_deps'].remove(dep) - self.ordered_specs = resolve_dependencies(self.parsed_easyconfigs) + self.ordered_specs = resolve_dependencies(self.parsed_easyconfigs, retain_all_deps=True) def test_dep_graph(self): """Unit test that builds a full dependency graph.""" -- GitLab From ae9df0b0abcbe10010b17f04f2fc7150f67d318a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 27 Apr 2015 10:12:58 +0200 Subject: [PATCH 1020/1217] bump version of libpng in R 3.2.0 easyconfigs --- .../l/libpng/libpng-1.6.17-foss-2015a.eb | 19 +++++++++++++++++++ .../l/libpng/libpng-1.6.17-goolf-1.7.20.eb | 19 +++++++++++++++++++ .../l/libpng/libpng-1.6.17-intel-2015a.eb | 19 +++++++++++++++++++ .../r/R/R-3.2.0-foss-2015a-bare.eb | 2 +- .../r/R/R-3.2.0-goolf-1.7.20-bare.eb | 2 +- .../r/R/R-3.2.0-intel-2015a-bare.eb | 2 +- 6 files changed, 60 insertions(+), 3 deletions(-) create mode 100644 easybuild/easyconfigs/l/libpng/libpng-1.6.17-foss-2015a.eb create mode 100644 easybuild/easyconfigs/l/libpng/libpng-1.6.17-goolf-1.7.20.eb create mode 100644 easybuild/easyconfigs/l/libpng/libpng-1.6.17-intel-2015a.eb diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.17-foss-2015a.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.17-foss-2015a.eb new file mode 100644 index 0000000000..2519d4c46d --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.17-foss-2015a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.17' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.17-goolf-1.7.20.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.17-goolf-1.7.20.eb new file mode 100644 index 0000000000..8e90204af6 --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.17-goolf-1.7.20.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.17' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.17-intel-2015a.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.17-intel-2015a.eb new file mode 100644 index 0000000000..afab7cb441 --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.17-intel-2015a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.17' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/r/R/R-3.2.0-foss-2015a-bare.eb b/easybuild/easyconfigs/r/R/R-3.2.0-foss-2015a-bare.eb index 84e71410fa..6cf2221cfd 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.0-foss-2015a-bare.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.0-foss-2015a-bare.eb @@ -17,7 +17,7 @@ configopts += " --with-recommended-packages=no" dependencies = [ ('libreadline', '6.3'), ('ncurses', '5.9'), - ('libpng', '1.6.16'), # for plotting in R + ('libpng', '1.6.17'), # for plotting in R ('libjpeg-turbo', '1.4.0'), # for plottting in R ('Java', '1.7.0_80', '', True), # Java bindings are built if Java is found, might as well provide it ] diff --git a/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb b/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb index ed4f2cd8f4..d8c3392f6a 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20-bare.eb @@ -17,7 +17,7 @@ configopts += " --with-recommended-packages=no" dependencies = [ ('libreadline', '6.3'), ('ncurses', '5.9'), - ('libpng', '1.6.16'), # for plotting in R + ('libpng', '1.6.17'), # for plotting in R ('libjpeg-turbo', '1.4.0'), # for plottting in R ('Java', '1.7.0_80', '', True), # Java bindings are built if Java is found, might as well provide it ] diff --git a/easybuild/easyconfigs/r/R/R-3.2.0-intel-2015a-bare.eb b/easybuild/easyconfigs/r/R/R-3.2.0-intel-2015a-bare.eb index db8d624ca1..f4f7ec9970 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.0-intel-2015a-bare.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.0-intel-2015a-bare.eb @@ -17,7 +17,7 @@ configopts += " --with-recommended-packages=no" dependencies = [ ('libreadline', '6.3'), ('ncurses', '5.9'), - ('libpng', '1.6.16'), # for plotting in R + ('libpng', '1.6.17'), # for plotting in R ('libjpeg-turbo', '1.4.0'), # for plottting in R ('Java', '1.7.0_80', '', True), # Java bindings are built if Java is found, might as well provide it ] -- GitLab From 3af0e7c932393ffdd18b5915d2fc087280fb0986 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 28 Apr 2015 10:27:27 +0200 Subject: [PATCH 1021/1217] fix date and counts in release notes --- RELEASE_NOTES | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 04333d14ff..737619aa4f 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -3,12 +3,13 @@ For more detailed information, please see the git log. These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html. -The latest version of easybuild-easyconfig provides 3,344 easyconfig files, for 608 different software packages, +The latest version of easybuild-easyconfig provides 3,617 easyconfig files, for 608 different software packages, 33 different (compiler) toolchains and 8 software bundles. -v2.1.0 (April 28th 2015) +v2.1.0 (April 30th 2015) ------------------------ +feature + bugfix release - added example easyconfig files for 27 new software packages: AFNI (#1322, #1521), BCFtools (#1492), getdp (#1518), gmsh (#1518), gtest (#1244), hanythingondemand (#1530), mawk (#1369), Minimac (#815), Minimac3 (#1502), monty (#1548), Octave (#1563), pbs_python (#1530), pigz (#1036), -- GitLab From d952c5b7d9d733b1ef5d8a90d7f4d9ea828432db Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 28 Apr 2015 10:45:47 +0200 Subject: [PATCH 1022/1217] fix long line --- RELEASE_NOTES | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 737619aa4f..84c44e6c5f 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -49,7 +49,8 @@ feature + bugfix release rCUDA (#720), SCALCE (#1242), SMALT (#568), STREAM (#1332), worker (#1307), Xerces-C++ (#1370), XQilla (#1370), ZPAQ (#1242) - added easyconfigs for new (common) toolchains - foss/2015a (#1239), gompi/1.5.16 (#1380), gmvolf/1.7.20 (#1397), goolf/1.7.20 (#1294), intel/2015a (#1238), intel/2015.02 (#1393), iomkl/2015.01 (#1325), iomkl/2015.02 (#1401) + foss/2015a (#1239), gompi/1.5.16 (#1380), gmvolf/1.7.20 (#1397), goolf/1.7.20 (#1294), intel/2015a (#1238), + intel/2015.02 (#1393), iomkl/2015.01 (#1325), iomkl/2015.02 (#1401) - added new software bundle: Autotools (#1385) - various other enhancements, including: - don't define $LDSHARED in zlib easyconfigs (#1350) -- GitLab From 9276b84095c3561e9114abfda2155cdcd8656124 Mon Sep 17 00:00:00 2001 From: Markus Geimer Date: Tue, 28 Apr 2015 17:10:06 +0200 Subject: [PATCH 1023/1217] Adjusted Cube download URL and tweaked build Requires https://github.com/hpcugent/easybuild-easyblocks/pull/552 --- .../c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb index a097385484..cd8e278f30 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb @@ -20,19 +20,21 @@ description = """Cube, which is used as performance report explorer for Scalasca toolchain = {'name': 'gompi', 'version': '1.4.12-no-OFED'} -# http://apps.fz-juelich.de/scalasca/releases/cube/4.2/dist/cube-4.2.tar.gz sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://apps.fz-juelich.de/scalasca/releases/cube/4.2/dist'] +source_urls = ['http://apps.fz-juelich.de/scalasca/releases/cube/%(version_major_minor)s/dist'] patches = ['Cube-4.2_fix-Qt-version-check.patch'] dependencies = [('Qt', '4.8.4')] -configopts = "QMAKE=$EBROOTQT/bin/qmake MOC=$EBROOTQT/bin/moc UIC=$EBROOTQT/bin/uic" - sanity_check_paths = { 'files': ["bin/cube", "lib/libcube4.a", "lib/libcube4.so"], 'dirs': ["include/cube", "include/cubew"], } +# If all prerequisites for the Cube Java reader are available on the system, +# parallel builds will fail. Alternatively, disable the Java reader using +# configopts = "--without-java-reader" +maxparallel = 1 + moduleclass = 'perf' -- GitLab From d8c294bcd0f997894d59d977a998c975727b5f6d Mon Sep 17 00:00:00 2001 From: Markus Geimer Date: Tue, 28 Apr 2015 18:31:22 +0200 Subject: [PATCH 1024/1217] Adjusted Scalasca URL --- .../s/Scalasca/Scalasca-2.0-gompi-1.4.12-no-OFED.eb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/Scalasca/Scalasca-2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/s/Scalasca/Scalasca-2.0-gompi-1.4.12-no-OFED.eb index 1f62732cc1..b4c09a0c49 100644 --- a/easybuild/easyconfigs/s/Scalasca/Scalasca-2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/s/Scalasca/Scalasca-2.0-gompi-1.4.12-no-OFED.eb @@ -26,9 +26,8 @@ dependencies = [ ('OTF2', '1.2.1'), ] -# http://apps.fz-juelich.de/scalasca/releases/scalasca/2.0/dist/scalasca-2.0.tar.gz sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://apps.fz-juelich.de/scalasca/releases/scalasca/2.0/dist'] +source_urls = ['http://apps.fz-juelich.de/scalasca/releases/scalasca/%(version_major_minor)s/dist'] sanity_check_paths = { 'files': ["bin/scalasca", ("lib64/libpearl.replay.a", "lib/libpearl.replay.a")], -- GitLab From 1b9d0beacdeccd8e77ac617239aae93598f7afa4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 29 Apr 2015 07:46:01 +0200 Subject: [PATCH 1025/1217] include link to EB@Cray wiki page --- RELEASE_NOTES | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 84c44e6c5f..31240be8e3 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -18,6 +18,7 @@ feature + bugfix release Xmipp (#1489) - added easyconfigs for new (Cray-specific) toolchains (#1538): CrayGNU, CrayIntel, CrayCCE - initially supported software (using CrayGNU toolchains): CP2K, GROMACS, HPL, Python + numpy/scipy, WRF (#1558) + - see also https://github.com/hpcugent/easybuild/wiki/EasyBuild-on-Cray - added new easyconfigs for existing toolchains: goolf/1.5.16, intel/2014.06 - added additional easyconfigs for various supported software packages: version updates, different toolchains, ... including GCC v5.1.0, OpenFOAM v2.3.1, R v3.1.3 and v3.2.0, PETSc/SLEPc v3.5.3, WIEN2k v14.1 @@ -27,7 +28,7 @@ feature + bugfix release - set $LD_PRELOAD for Hoard and jemalloc (#1470) - fix homepage in SCOTCH easyconfigs (#1485) - adding missing six/ecdsa dependencies for dateutil/paramiko Python packages in Python easyconfigs (#1504, #1505, #1506, #1507, #1508, #1509, #1510) - - enable pic option in expat easyconfigs (#1562) + - enable pic toolchain option in expat easyconfigs (#1562) - extend list of source URLs for Bioconductor packages in R easyconfigs to include 'release' source URLs (#1568) - various bug fixes, including: - adding missing zlib dependency in all Tcl easyconfig files (#1344) -- GitLab From a67f2a824517e5587b88992dfb75135988593f00 Mon Sep 17 00:00:00 2001 From: Markus Geimer Date: Wed, 29 Apr 2015 10:18:54 +0200 Subject: [PATCH 1026/1217] Try to fix build issue by patching `configure` Provide updated easyconfig for Cube 4.3 (which should be used anyhow) --- .../c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb | 19 +- .../c/Cube/Cube-4.2_fix-with-qt-check.patch | 209 ++++++++++++++++++ .../c/Cube/Cube-4.3-gompi-1.4.12-no-OFED.eb | 40 ++++ 3 files changed, 261 insertions(+), 7 deletions(-) create mode 100644 easybuild/easyconfigs/c/Cube/Cube-4.2_fix-with-qt-check.patch create mode 100644 easybuild/easyconfigs/c/Cube/Cube-4.3-gompi-1.4.12-no-OFED.eb diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb index cd8e278f30..b578e14673 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb @@ -1,6 +1,7 @@ # This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild -# Copyright:: Copyright 2013 Juelich Supercomputing Centre, Germany +# Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany # Authors:: Bernd Mohr +# Authors:: Markus Geimer # License:: New BSD # # This work is based from experiences from the UNITE project @@ -23,18 +24,22 @@ toolchain = {'name': 'gompi', 'version': '1.4.12-no-OFED'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://apps.fz-juelich.de/scalasca/releases/cube/%(version_major_minor)s/dist'] -patches = ['Cube-4.2_fix-Qt-version-check.patch'] +patches = [ + 'Cube-4.2_fix-Qt-version-check.patch', + 'Cube-4.2_fix-with-qt-check.patch', +] dependencies = [('Qt', '4.8.4')] +# The Cube Java reader is currently only used by TAU, which ships it's own +# copy as a jar file. If you really want to enable it, make sure to set +# 'maxparallel=1', as automake's Java support is has difficulties handling +# parallel builds. +configopts = "--without-java-reader" + sanity_check_paths = { 'files': ["bin/cube", "lib/libcube4.a", "lib/libcube4.so"], 'dirs': ["include/cube", "include/cubew"], } -# If all prerequisites for the Cube Java reader are available on the system, -# parallel builds will fail. Alternatively, disable the Java reader using -# configopts = "--without-java-reader" -maxparallel = 1 - moduleclass = 'perf' diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.2_fix-with-qt-check.patch b/easybuild/easyconfigs/c/Cube/Cube-4.2_fix-with-qt-check.patch new file mode 100644 index 0000000000..5ea89bb644 --- /dev/null +++ b/easybuild/easyconfigs/c/Cube/Cube-4.2_fix-with-qt-check.patch @@ -0,0 +1,209 @@ +--- build-backend/configure.orig 2013-08-02 13:20:33.000000000 +0200 ++++ build-backend/configure 2015-04-29 09:56:00.891697331 +0200 +@@ -19819,6 +19819,8 @@ $as_echo "$at_darwin" >&6; } + + # Find qmake. + ++ if test "x$QT_PATH" == "x"; then : ++ + for ac_prog in qmake-qt4 qmake + do + # Extract the first word of "$ac_prog", so it can be a program name with args. +@@ -19867,6 +19869,57 @@ done + test -n "$QMAKE" || QMAKE="missing" + + ++else ++ ++ for ac_prog in qmake ++do ++ # Extract the first word of "$ac_prog", so it can be a program name with args. ++set dummy $ac_prog; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if ${ac_cv_path_QMAKE+:} false; then : ++ $as_echo_n "(cached) " >&6 ++else ++ case $QMAKE in ++ [\\/]* | ?:[\\/]*) ++ ac_cv_path_QMAKE="$QMAKE" # Let the user override the test with a path. ++ ;; ++ *) ++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++as_dummy="$QT_PATH:$QT_DIR:$PATH:$tmp_qt_paths" ++for as_dir in $as_dummy ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_path_QMAKE="$as_dir/$ac_word$ac_exec_ext" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++ ;; ++esac ++fi ++QMAKE=$ac_cv_path_QMAKE ++if test -n "$QMAKE"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $QMAKE" >&5 ++$as_echo "$QMAKE" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ test -n "$QMAKE" && break ++done ++test -n "$QMAKE" || QMAKE="missing" ++ ++ ++fi + if test x"$QMAKE" = xmissing; then + as_fn_error $? "Cannot find qmake in your PATH. Try to specify the exact path using the option --with-qt= or to switch off the compilation of gui using option --without-gui." "$LINENO" 5 + break +@@ -20309,7 +20362,59 @@ $as_echo "$at_cv_qt_build" >&6; } + + # Find moc (Meta Object Compiler). + +- for ac_prog in moc-qt4 moc ++ if test "x$QT_PATH" == "x"; then : ++ ++ for ac_prog in moc-qt4 moc ++do ++ # Extract the first word of "$ac_prog", so it can be a program name with args. ++set dummy $ac_prog; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if ${ac_cv_path_MOC+:} false; then : ++ $as_echo_n "(cached) " >&6 ++else ++ case $MOC in ++ [\\/]* | ?:[\\/]*) ++ ac_cv_path_MOC="$MOC" # Let the user override the test with a path. ++ ;; ++ *) ++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++as_dummy="$PATH:$tmp_qt_paths" ++for as_dir in $as_dummy ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_path_MOC="$as_dir/$ac_word$ac_exec_ext" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++ ;; ++esac ++fi ++MOC=$ac_cv_path_MOC ++if test -n "$MOC"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $MOC" >&5 ++$as_echo "$MOC" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ test -n "$MOC" && break ++done ++test -n "$MOC" || MOC="missing" ++ ++ ++else ++ ++ for ac_prog in moc + do + # Extract the first word of "$ac_prog", so it can be a program name with args. + set dummy $ac_prog; ac_word=$2 +@@ -20356,6 +20461,8 @@ fi + done + test -n "$MOC" || MOC="missing" + ++ ++fi + if test x"$MOC" = xmissing; then + as_fn_error $? "Cannot find moc (Meta Object Compiler) in your PATH. Try using --with-qt." "$LINENO" 5 + break +@@ -20364,7 +20471,59 @@ test -n "$MOC" || MOC="missing" + + # Find uic (User Interface Compiler). + +- for ac_prog in uic-qt4 uic ++ if test "x$QT_PATH" == "x"; then : ++ ++ for ac_prog in uic-qt4 uic ++do ++ # Extract the first word of "$ac_prog", so it can be a program name with args. ++set dummy $ac_prog; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if ${ac_cv_path_UIC+:} false; then : ++ $as_echo_n "(cached) " >&6 ++else ++ case $UIC in ++ [\\/]* | ?:[\\/]*) ++ ac_cv_path_UIC="$UIC" # Let the user override the test with a path. ++ ;; ++ *) ++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++as_dummy="$PATH:$tmp_qt_paths" ++for as_dir in $as_dummy ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_path_UIC="$as_dir/$ac_word$ac_exec_ext" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++ ;; ++esac ++fi ++UIC=$ac_cv_path_UIC ++if test -n "$UIC"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $UIC" >&5 ++$as_echo "$UIC" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ test -n "$UIC" && break ++done ++test -n "$UIC" || UIC="missing" ++ ++ ++else ++ ++ for ac_prog in uic + do + # Extract the first word of "$ac_prog", so it can be a program name with args. + set dummy $ac_prog; ac_word=$2 +@@ -20411,6 +20570,8 @@ fi + done + test -n "$UIC" || UIC="missing" + ++ ++fi + if test x"$UIC" = xmissing; then + as_fn_error $? "Cannot find uic (User Interface Compiler) in your PATH. Try using --with-qt." "$LINENO" 5 + break diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.3-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/c/Cube/Cube-4.3-gompi-1.4.12-no-OFED.eb new file mode 100644 index 0000000000..0a2aec777e --- /dev/null +++ b/easybuild/easyconfigs/c/Cube/Cube-4.3-gompi-1.4.12-no-OFED.eb @@ -0,0 +1,40 @@ +# This is an easyconfig file for EasyBuild, see https://github.com/hpcugent/easybuild +# Copyright:: Copyright 2013-2015 Juelich Supercomputing Centre, Germany +# Authors:: Bernd Mohr +# Authors:: Markus Geimer +# License:: New BSD +# +# This work is based from experiences from the UNITE project +# http://apps.fz-juelich.de/unite/ +## +easyblock = 'EB_Score_minus_P' + +name = "Cube" +version = "4.3" + +homepage = 'http://www.scalasca.org/software/cube-4.x/download.html' +description = """Cube, which is used as performance report explorer for Scalasca and + Score-P, is a generic tool for displaying a multi-dimensional performance space + consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system + resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree + can be collapsed or expanded to achieve the desired level of granularity.""" + +toolchain = {'name': 'gompi', 'version': '1.4.12-no-OFED'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://apps.fz-juelich.de/scalasca/releases/cube/%(version_major_minor)s/dist'] + +dependencies = [('Qt', '4.8.4')] + +# The Cube Java reader is currently only used by TAU, which ships it's own +# copy as a jar file. If you really want to enable it, make sure to set +# 'maxparallel=1', as automake's Java support is has difficulties handling +# parallel builds. +configopts = "--without-java-reader" + +sanity_check_paths = { + 'files': ["bin/cube", "lib/libcube4.a", "lib/libcube4.so"], + 'dirs': ["include/cube", "include/cubew"], +} + +moduleclass = 'perf' -- GitLab From 0a8c2c2c2df86ed790eee92024a2dc1ce8ac08fb Mon Sep 17 00:00:00 2001 From: Markus Geimer Date: Wed, 29 Apr 2015 11:17:57 +0200 Subject: [PATCH 1027/1217] Add comment that patches are no longer required for Cube 4.2.2 and up --- easybuild/easyconfigs/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb index b578e14673..941a048ad1 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb @@ -24,6 +24,7 @@ toolchain = {'name': 'gompi', 'version': '1.4.12-no-OFED'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://apps.fz-juelich.de/scalasca/releases/cube/%(version_major_minor)s/dist'] +# Backported fixes included in Cube 4.2.2 and up patches = [ 'Cube-4.2_fix-Qt-version-check.patch', 'Cube-4.2_fix-with-qt-check.patch', -- GitLab From 5da3932cb8ae56f330d05e98c9406cc155a4d4a0 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 29 Apr 2015 22:36:23 +0200 Subject: [PATCH 1028/1217] include PR #1574 in release notes --- RELEASE_NOTES | 2 ++ 1 file changed, 2 insertions(+) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 31240be8e3..9cda838d2c 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -38,6 +38,8 @@ feature + bugfix release - replace use of $root with %(installdir)s to ensure compatibility with module files in Lua syntax (#1532) - stop relying on $MKLROOT in ROOT easyconfigs (#1537) - use proper Bundle easyblock for biodeps/PRACE (#1566) + - make source_urls in Cube and Scalasca easyconfigs compatible with --try-software-version (#1574) + - add patch for Cube to fix configure script w.r.t. Qt dependency, add --without-java-reader configure option (#1574) v2.0.0 (March 6th 2015) ----------------------- -- GitLab From 1272d0e0570333f0a362b1d8dbe751cc64cfb14a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 30 Apr 2015 08:54:20 +0200 Subject: [PATCH 1029/1217] fix easyconfigs count --- RELEASE_NOTES | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 9cda838d2c..c00535497a 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -3,7 +3,7 @@ For more detailed information, please see the git log. These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html. -The latest version of easybuild-easyconfig provides 3,617 easyconfig files, for 608 different software packages, +The latest version of easybuild-easyconfig provides 3,618 easyconfig files, for 608 different software packages, 33 different (compiler) toolchains and 8 software bundles. v2.1.0 (April 30th 2015) -- GitLab From 80e714ed681c330694fbf27ab62462db2ab04ce7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 30 Apr 2015 13:36:11 +0200 Subject: [PATCH 1030/1217] bump version to v2.1.x --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 5b55ee3e55..e89248dca4 100644 --- a/setup.py +++ b/setup.py @@ -41,7 +41,7 @@ from distutils import log # note: release candidates should be versioned as a pre-release, e.g. "1.1rc1" # 1.1-rc1 would indicate a post-release, i.e., and update of 1.1, so beware! -VERSION = '2.1.0' +VERSION = '2.1.1dev' API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From 172dc89ec881e00da3be3a32b133013bc46769b9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 30 Apr 2015 16:06:57 +0200 Subject: [PATCH 1031/1217] bump version to v2.2.0dev --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index e89248dca4..9e5dd5137c 100644 --- a/setup.py +++ b/setup.py @@ -41,7 +41,7 @@ from distutils import log # note: release candidates should be versioned as a pre-release, e.g. "1.1rc1" # 1.1-rc1 would indicate a post-release, i.e., and update of 1.1, so beware! -VERSION = '2.1.1dev' +VERSION = '2.2.0dev' API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From 0a603f9b0f666e4127d34e8b6b1686c27979ee7b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 30 Apr 2015 21:18:35 +0200 Subject: [PATCH 1032/1217] add easyconfig file for EasyBuild v2.1.0 --- .../e/EasyBuild/EasyBuild-2.1.0.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb new file mode 100644 index 0000000000..d753a18457 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb @@ -0,0 +1,31 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = "2.1.0" + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/v/vsc-base/', + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'vsc-base-2.2.0.tar.gz', + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' -- GitLab From bd4e4c8b7189166116c41cced62fd385e1872741 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 30 Apr 2015 21:19:52 +0200 Subject: [PATCH 1033/1217] style fix --- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb index d753a18457..b11b8ff6c1 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb @@ -1,7 +1,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' -version = "2.1.0" +version = '2.1.0' homepage = 'http://hpcugent.github.com/easybuild/' description = """EasyBuild is a software build and installation framework -- GitLab From f7adb79305616713b1d28b24b466e84669642750 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Mon, 4 May 2015 09:49:11 +0200 Subject: [PATCH 1034/1217] BLAST+ with foss 2015a --- .../BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb | 41 +++++++++++++++++++ 1 file changed, 41 insertions(+) create mode 100644 easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..37178f8aa5 --- /dev/null +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb @@ -0,0 +1,41 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'ConfigureMake' + +name = 'BLAST+' +version = "2.2.30" +versionsuffix = '-Python-2.7.9' + +homepage = 'http://blast.ncbi.nlm.nih.gov/' +description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm + for comparing primary biological sequence information, such as the amino-acid + sequences of different proteins or the nucleotides of DNA sequences.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = ['ncbi-blast-%(version)s+-src.tar.gz'] +source_urls = ['http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] + +patches = ['%(name)s-%(version)s_basename-fixes.patch'] + +dependencies = [('Boost', '1.57.0', versionsuffix)] + +configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' + +sanity_check_paths = { + 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], + 'dirs': [] +} + +moduleclass = 'bio' + -- GitLab From 638cc7d093d42f9d64b55820f73c2dd75391b28a Mon Sep 17 00:00:00 2001 From: Maxime Schmitt Date: Tue, 5 May 2015 16:00:36 +0200 Subject: [PATCH 1035/1217] Adding the easyconfigs for ictce-7.3.5 --- easybuild/easyconfigs/i/icc/icc-2015.3.187.eb | 17 ++++++++++++++ .../i/iccifort/iccifort-2015.3.187.eb | 16 ++++++++++++++ easybuild/easyconfigs/i/ictce/ictce-7.3.5.eb | 21 ++++++++++++++++++ .../easyconfigs/i/ifort/ifort-2015.3.187.eb | 17 ++++++++++++++ easybuild/easyconfigs/i/iimpi/iimpi-7.3.5.eb | 18 +++++++++++++++ .../i/imkl/imkl-11.2.3.187-iimpi-7.3.5.eb | 22 +++++++++++++++++++ .../impi-5.0.3.048-iccifort-2015.3.187.eb | 19 ++++++++++++++++ 7 files changed, 130 insertions(+) create mode 100644 easybuild/easyconfigs/i/icc/icc-2015.3.187.eb create mode 100644 easybuild/easyconfigs/i/iccifort/iccifort-2015.3.187.eb create mode 100644 easybuild/easyconfigs/i/ictce/ictce-7.3.5.eb create mode 100644 easybuild/easyconfigs/i/ifort/ifort-2015.3.187.eb create mode 100644 easybuild/easyconfigs/i/iimpi/iimpi-7.3.5.eb create mode 100644 easybuild/easyconfigs/i/imkl/imkl-11.2.3.187-iimpi-7.3.5.eb create mode 100644 easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187.eb diff --git a/easybuild/easyconfigs/i/icc/icc-2015.3.187.eb b/easybuild/easyconfigs/i/icc/icc-2015.3.187.eb new file mode 100644 index 0000000000..55dec91be5 --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2015.3.187.eb @@ -0,0 +1,17 @@ +name = 'icc' +version = '2015.3.187' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_ccompxe_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2015.3.187.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2015.3.187.eb new file mode 100644 index 0000000000..8387432380 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2015.3.187.eb @@ -0,0 +1,16 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2015.3.187' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and Intel MKL""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ictce/ictce-7.3.5.eb b/easybuild/easyconfigs/i/ictce/ictce-7.3.5.eb new file mode 100644 index 0000000000..6190ed2906 --- /dev/null +++ b/easybuild/easyconfigs/i/ictce/ictce-7.3.5.eb @@ -0,0 +1,21 @@ +easyblock = "Toolchain" + +name = 'ictce' +version = '7.3.5' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '3.187' +compver = '2015.%s' % suff + +dependencies = [ # version/released + ('icc', compver), # Apr 13th 2015 + ('ifort', compver), # Apr 13th 2015 + ('impi', '5.0.3.048', '', ('iccifort', compver)), # Feb 10th 2015 + ('imkl', '11.2.%s' % suff, '', ('iimpi', version)), # Apr 13th 2015 +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.3.187.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.3.187.eb new file mode 100644 index 0000000000..8253a3390b --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.3.187.eb @@ -0,0 +1,17 @@ +name = 'ifort' +version = '2015.3.187' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_fcompxe_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-7.3.5.eb b/easybuild/easyconfigs/i/iimpi/iimpi-7.3.5.eb new file mode 100644 index 0000000000..b0fe67cb26 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-7.3.5.eb @@ -0,0 +1,18 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '7.3.5' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2015.3.187' +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '5.0.3.048', '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.2.3.187-iimpi-7.3.5.eb b/easybuild/easyconfigs/i/imkl/imkl-11.2.3.187-iimpi-7.3.5.eb new file mode 100644 index 0000000000..807b5f2004 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.2.3.187-iimpi-7.3.5.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.2.3.187' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '7.3.5'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +interfaces = True + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187.eb b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187.eb new file mode 100644 index 0000000000..5e0972d8f3 --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '5.0.3.048' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2015.3.187'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' -- GitLab From 26de6e35ca028edfc16dbf44ec58e1858b45e426 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 5 May 2015 18:36:05 +0200 Subject: [PATCH 1036/1217] Boost 1.58 for intel/2015a --- .../Boost-1.58.0-intel-2015a-Python-2.7.9.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.58.0-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.58.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..a209577bba --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,25 @@ +name = 'Boost' +version = '1.58.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +pythonversion = '2.7.9' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' -- GitLab From 3568cde808c6d65622e0581414372da7c1ffd687 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 5 May 2015 18:37:17 +0200 Subject: [PATCH 1037/1217] Boost 1.58.0 for foss/2015a --- .../Boost-1.58.0-foss-2015a-Python-2.7.9.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..bbef8b760b --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015a-Python-2.7.9.eb @@ -0,0 +1,25 @@ +name = 'Boost' +version = '1.58.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +pythonversion = '2.7.9' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' -- GitLab From abee1f0f0dd2f23cdb08bb9aaeb504a80ea11d6f Mon Sep 17 00:00:00 2001 From: Maxime Schmitt Date: Wed, 6 May 2015 11:31:15 +0200 Subject: [PATCH 1038/1217] Adding HPL 2.1 with ictce-7.3.5 --- .../easyconfigs/h/HPL/HPL-2.1-ictce-7.3.5.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-ictce-7.3.5.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-ictce-7.3.5.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-ictce-7.3.5.eb new file mode 100644 index 0000000000..55ab924d7d --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-ictce-7.3.5.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'ictce', 'version': '7.3.5'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' -- GitLab From 633e68830ef8be546092e0d16857af624dfe44b2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 7 May 2015 15:59:13 +0300 Subject: [PATCH 1039/1217] enable usempi in GROMACS Cray easyconfig, the easyblock enables MPI support on it --- .../easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb index c7618bc1f3..1aa3886405 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb @@ -19,6 +19,7 @@ description = """GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'usempi': True} # eg. ftp://ftp.gromacs.org/pub/gromacs/gromacs-4.6.tar.gz source_urls = [ -- GitLab From b9f89c0d31ee7e48beac5dcb6e6383313d9ed13d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 30 Apr 2015 21:18:35 +0200 Subject: [PATCH 1040/1217] add easyconfig file for EasyBuild v2.1.0 --- .../e/EasyBuild/EasyBuild-2.1.0.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb new file mode 100644 index 0000000000..d753a18457 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb @@ -0,0 +1,31 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = "2.1.0" + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/v/vsc-base/', + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'vsc-base-2.2.0.tar.gz', + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' -- GitLab From 8ab052fa8bfff470f7e635ae25fc48d555dcfaa9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 30 Apr 2015 21:19:52 +0200 Subject: [PATCH 1041/1217] style fix --- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb index d753a18457..b11b8ff6c1 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb @@ -1,7 +1,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' -version = "2.1.0" +version = '2.1.0' homepage = 'http://hpcugent.github.com/easybuild/' description = """EasyBuild is a software build and installation framework -- GitLab From c834c42978d09f4ada1be3fc9ef552c6c74d6f5b Mon Sep 17 00:00:00 2001 From: Jens Date: Mon, 11 May 2015 09:42:44 +0200 Subject: [PATCH 1042/1217] added even newer cutadapt --- ...cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..1c463c28a1 --- /dev/null +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics (SIB) +# Biozentrum - University of Basel + +easyblock = "PythonPackage" + +name = 'cutadapt' +version = '1.8.1' + +homepage = 'http://code.google.com/p/cutadapt/' +description = """ cutadapt removes adapter sequences from high-throughput sequencing data. + This is usually necessary when the read length of the sequencing machine is longer than + the molecule that is sequenced, for example when sequencing microRNAs. """ + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['https://github.com/marcelm/cutadapt/archive/'] +sources = ['v%(version)s.tar.gz'] + +python = 'Python' +pyver = '2.7.9' +pyshortver = '.'.join(pyver.split('.')[:2]) + +versionsuffix = "-%s-%s" % (python, pyver) + +dependencies = [ + (python, pyver), +] + +sanity_check_paths = { + 'files': ['bin/cutadapt',], + 'dirs': [], +} + +moduleclass = 'bio' + -- GitLab From c1a99608bf96df972dc4e1b30ee639db3bae71f5 Mon Sep 17 00:00:00 2001 From: Jens Date: Mon, 11 May 2015 09:56:11 +0200 Subject: [PATCH 1043/1217] fixed filename --- ...b-Python-2.7.8.eb => cutadapt-1.5-intel-2014b-Python-2.7.8.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/c/cutadapt/{cutadapt-1.5-intel2014b-Python-2.7.8.eb => cutadapt-1.5-intel-2014b-Python-2.7.8.eb} (100%) diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb similarity index 100% rename from easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel2014b-Python-2.7.8.eb rename to easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb -- GitLab From 955ec3e9a236d4fc3fd0687ea16ccc79d1e8eb6e Mon Sep 17 00:00:00 2001 From: Jens Date: Mon, 11 May 2015 10:19:56 +0200 Subject: [PATCH 1044/1217] fixed remarks --- .../c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb | 2 +- .../c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb | 3 +-- 2 files changed, 2 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb index 9be9435a32..8a431e4a45 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb @@ -26,7 +26,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/cutadapt','lib/python2.7/site-packages/cutadapt/_align.so',], + 'files': ['bin/cutadapt','lib/python%s/site-packages/cutadapt/_align.so' % pyshortver], 'dirs': [], } diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb index 1c463c28a1..737e7e93bb 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb @@ -29,9 +29,8 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/cutadapt',], + 'files': ['bin/cutadapt','lib/python%s/site-packages/cutadapt/_align.so' % pyshortver], 'dirs': [], } moduleclass = 'bio' - -- GitLab From 9bb645985ef91f8119d1f8e860e01050f8c4a3c3 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 11 May 2015 11:14:44 +0200 Subject: [PATCH 1045/1217] add easyconfig for networkx --- ...networkx-1.9.1-intel-2015a-Python-2.7.9.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/n/networkx/networkx-1.9.1-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/n/networkx/networkx-1.9.1-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/n/networkx/networkx-1.9.1-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..f6ae1e74b7 --- /dev/null +++ b/easybuild/easyconfigs/n/networkx/networkx-1.9.1-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,24 @@ +easyblock = 'PythonPackage' + +name = 'networkx' +version = '1.9.1' + +homepage = 'https://pypi.python.org/pypi/networkx' +description = """NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, + and functions of complex networks.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonver = '2.7.9' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +dependencies = [ + (python, pythonver), +] + +moduleclass = 'tools' -- GitLab From 21ae64206431c783930c3a153769ea138f950518 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 11 May 2015 15:23:36 +0200 Subject: [PATCH 1046/1217] add easyconfig for scikit-learn v0.16.1 --- ...t-learn-0.16.1-intel-2015a-Python-2.7.9.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.16.1-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.16.1-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.16.1-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..8b997036dd --- /dev/null +++ b/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.16.1-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,29 @@ +easyblock = 'PythonPackage' + +name = 'scikit-learn' +version = '0.16.1' + +homepage = 'http://scikit-learn.org/stable/index.html' +description = """Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, +building upon numpy, scipy, and matplotlib. As a machine-learning module, +it provides versatile tools for data mining and analysis in any field of science and engineering. +It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonversion = '2.7.9' +pythonshortversion = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) +dependencies = [ + (python, pythonversion), + ('matplotlib', '1.4.3', versionsuffix), +] + +options = {'modulename': "sklearn"} + +moduleclass = 'data' -- GitLab From 76564b498593ea34b852f40d935011b16ef293ec Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 11 May 2015 22:06:49 +0200 Subject: [PATCH 1047/1217] list tcsh as build dep in WRF built with CrayGNU, rather than providing it as a build dep --- .../easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb index 3806e63de1..aecb28f087 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb @@ -16,7 +16,10 @@ source_urls = [ ] # csh is used by WRF install scripts -builddependencies = [('tcsh', '6.18.01')] +# tcsh provided via EasyBuild may cause build to hang (in interactive configure?) +# ncurses related issue? rebuild tcsh without EB-provided ncurses? +#builddependencies = [('tcsh', '6.18.01')] +osdependencies = ['tcsh'] dependencies = [ ('JasPer', '1.900.1'), -- GitLab From ba29611f7e2ffd4e6bd2232ff367088395e06a57 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 12 May 2015 11:37:19 +0200 Subject: [PATCH 1048/1217] add easyconfig for Platanus (binary) --- .../p/Platanus/Platanus-1.2.1-linux-x86_64.eb | 20 +++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100644 easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb diff --git a/easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb b/easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb new file mode 100644 index 0000000000..c7b0660395 --- /dev/null +++ b/easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb @@ -0,0 +1,20 @@ +easyblock = 'Binary' + +name = 'Platanus' +version = '1.2.1' + +homepage = 'http://platanus.bio.titech.ac.jp/' +description = """PLATform for Assembling NUcleotide Sequences""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://platanus.bio.titech.ac.jp/Platanus_release/20130901010201'] +sources = ['platanus'] +checksums = ['02cf92847ec704d010a54df293b9c60a'] + +sanity_check_paths = { + 'files': ['platanus'], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From a66a1e81e0bb6298a540ec3e86b23c8e48785836 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 12 May 2015 14:39:33 +0200 Subject: [PATCH 1049/1217] fix versionsuffix in Platanus easyconfig --- easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb b/easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb index c7b0660395..2fa31617c3 100644 --- a/easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb +++ b/easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb @@ -2,6 +2,7 @@ easyblock = 'Binary' name = 'Platanus' version = '1.2.1' +versionsuffix = '-linux-x86_64' homepage = 'http://platanus.bio.titech.ac.jp/' description = """PLATform for Assembling NUcleotide Sequences""" -- GitLab From 85fedfc05c73a04c7d63b0bc8bf6f86894cbc518 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 12 May 2015 14:42:47 +0200 Subject: [PATCH 1050/1217] added python 3.4.3 intel 2015a --- .../p/Python/Python-3.4.3-intel-2015a.eb | 107 ++++++++++++++++++ 1 file changed, 107 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb new file mode 100644 index 0000000000..d0fad95102 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb @@ -0,0 +1,107 @@ +name = 'Python' +version = '3.4.3' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.1' +scipyversion = '0.14.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# order is important! +# package versions updated Jan 19th 2015 +exts_filter = ('PYTHONPATH="%(installdir)s:$PYTHONPATH python -c "import %(ext_name)s"', '') +exts_list = [ + ('setuptools', '11.3.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '6.0.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.4', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-1.8.0-mkl.patch', # % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('pbr', '0.10.8', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + }), + ('lockfile', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.21.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.0', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.15.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.13', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), +] -- GitLab From 6efa2756f2aa3c60766659f37892daa6eddb47c9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 12 May 2015 19:03:53 +0200 Subject: [PATCH 1051/1217] {bio}[intel/2015a] GROMACS 5.0.4 (mt, hybrid) --- .../GROMACS-5.0.4-intel-2015a-hybrid.eb | 42 +++++++++++++++++++ .../g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb | 42 +++++++++++++++++++ 2 files changed, 84 insertions(+) create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb new file mode 100644 index 0000000000..954bb885eb --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb @@ -0,0 +1,42 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# George Tsouloupas , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html +## +name = 'GROMACS' +version = '5.0.4' +versionsuffix = '-hybrid' + +homepage = 'http://www.gromacs.org' +description = """GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'openmp': True, 'usempi': True} + +source_urls = [ + 'ftp://ftp.gromacs.org/pub/gromacs/', + 'http://gerrit.gromacs.org/download/', +] + +sources = [ + SOURCELOWER_TAR_GZ, +# seems to have disappeared? +# 'regressiontests-5.0.2.tar.gz', +] + +builddependencies = [ + ('CMake', '3.2.2'), + ('libxml2', '2.9.2') +] + +dependencies = [('Boost', '1.58.0', '-Python-2.7.9')] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb new file mode 100644 index 0000000000..ea167cc786 --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb @@ -0,0 +1,42 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# George Tsouloupas , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html +## +name = 'GROMACS' +version = '5.0.4' +versionsuffix = '-mt' + +homepage = 'http://www.gromacs.org' +description = """GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'openmp': True, 'usempi': False} + +source_urls = [ + 'ftp://ftp.gromacs.org/pub/gromacs/', + 'http://gerrit.gromacs.org/download/', +] + +sources = [ + SOURCELOWER_TAR_GZ, +# seems to have disappeared? +# 'regressiontests-5.0.2.tar.gz', +] + +builddependencies = [ + ('CMake', '3.2.2'), + ('libxml2', '2.9.2') +] + +dependencies = [('Boost', '1.58.0', '-Python-2.7.9')] + +moduleclass = 'bio' -- GitLab From f8578e3c2d71882e2529fc3d359c034c74b2f276 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 12 May 2015 19:06:56 +0200 Subject: [PATCH 1052/1217] drop non-existing source URL, remove uncommented source tarball for regressiontests --- .../g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb | 12 ++---------- .../g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb | 12 ++---------- 2 files changed, 4 insertions(+), 20 deletions(-) diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb index 954bb885eb..0914af5ffd 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb @@ -21,16 +21,8 @@ description = """GROMACS is a versatile package to perform molecular dynamics, toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'openmp': True, 'usempi': True} -source_urls = [ - 'ftp://ftp.gromacs.org/pub/gromacs/', - 'http://gerrit.gromacs.org/download/', -] - -sources = [ - SOURCELOWER_TAR_GZ, -# seems to have disappeared? -# 'regressiontests-5.0.2.tar.gz', -] +source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] +sources = [SOURCELOWER_TAR_GZ] builddependencies = [ ('CMake', '3.2.2'), diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb index ea167cc786..f0da8f6053 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb @@ -21,16 +21,8 @@ description = """GROMACS is a versatile package to perform molecular dynamics, toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'openmp': True, 'usempi': False} -source_urls = [ - 'ftp://ftp.gromacs.org/pub/gromacs/', - 'http://gerrit.gromacs.org/download/', -] - -sources = [ - SOURCELOWER_TAR_GZ, -# seems to have disappeared? -# 'regressiontests-5.0.2.tar.gz', -] +source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] +sources = [SOURCELOWER_TAR_GZ] builddependencies = [ ('CMake', '3.2.2'), -- GitLab From d6c783a9bb34da485da46ea42fa3887340aa7026 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 12 May 2015 21:57:32 +0200 Subject: [PATCH 1053/1217] drop non-existing source URL, remove uncommented source tarball for regressiontests --- .../g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb | 12 ++---------- 1 file changed, 2 insertions(+), 10 deletions(-) diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb index 5e23be1026..b6b649c1ec 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb @@ -21,16 +21,8 @@ description = """GROMACS is a versatile package to perform molecular dynamics, toolchain = {'name': 'ictce', 'version': '7.1.2'} toolchainopts = {'openmp': True, 'usempi': False} -source_urls = [ - 'ftp://ftp.gromacs.org/pub/gromacs/', - 'http://gerrit.gromacs.org/download/', -] - -sources = [ - SOURCELOWER_TAR_GZ, -# seems to have disappeared? -# 'regressiontests-5.0.2.tar.gz', -] +source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] +sources = [SOURCELOWER_TAR_GZ] builddependencies = [ ('CMake', '2.8.12'), -- GitLab From 038bff909bf6a5d4d345cd8eb2830ce76a4e1f3b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 12 May 2015 22:08:13 +0200 Subject: [PATCH 1054/1217] {bio}[intel/2015a] SaguaroGW --- .../SaguaroGW-20150315-intel-2015a.eb | 31 +++++++++++++++++++ .../SaguaroGW/SaguaroGW_icpc-drop-const.patch | 15 +++++++++ 2 files changed, 46 insertions(+) create mode 100644 easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb create mode 100644 easybuild/easyconfigs/s/SaguaroGW/SaguaroGW_icpc-drop-const.patch diff --git a/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb new file mode 100644 index 0000000000..e922e754a3 --- /dev/null +++ b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb @@ -0,0 +1,31 @@ +easyblock = 'MakeCp' + +name = 'SaguaroGW' +version = '20150315' + +homepage = 'http://sourceforge.net/projects/saguarogw/' +description = """Saguaro Genome-Wide is a program to detect signatures of selection within populations, strains, + or species. It takes SNPs or nucleotides as input, and creates statistical local phylogenies for each region in +the genome.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'openmp': True} + +source_urls = ['http://sourceforge.net/code-snapshots/svn/s/sa/saguarogw/code/'] +# SVN revision r29 +sources = ['%(namelower)s-code-29.zip'] + +patches = ['SaguaroGW_icpc-drop-const.patch'] + +buildopts = 'CPLUSPLUS="$CXX" CC="$CC" OPEN_MP=yes' + +files_to_copy = [(['checkLock', 'CactiCorrelate', 'ChromoPaintCacti', 'ClusterCacti', 'Fasta2HMMFeature', + 'Genotype2HMMFeature', 'FilterCacti', 'HMMClassify', 'HMMTrain', 'HeatMaps', 'LocalTrees', + 'Maf2HMMFeature', 'PullFromFasta', 'Saguaro', 'Saguaro2Phylip', 'VCF2HMMFeature'], 'bin')] + +sanity_check_paths = { + 'files': [], + 'dirs': ['bin'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW_icpc-drop-const.patch b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW_icpc-drop-const.patch new file mode 100644 index 0000000000..193b028341 --- /dev/null +++ b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW_icpc-drop-const.patch @@ -0,0 +1,15 @@ +fix issue with Intel compilers: 'the object has cv-qualifiers that are not compatible with the member function' +author: Kenneth Hoste (Ghent University) +--- /tmp/vsc40023/easybuild_build/SaguaroGW/20150315/intel-2015a/saguarogw-code-29/base/CommandLineParser.h.orig 2012-05-16 15:40:12.000000000 +0200 ++++ /tmp/vsc40023/easybuild_build/SaguaroGW/20150315/intel-2015a/saguarogw-code-29/base/CommandLineParser.h 2015-05-12 21:54:40.830166431 +0200 +@@ -39,8 +39,8 @@ + string GetName() { return mName; } + string GetDescription() { return mDesc; } + +-friend bool operator< (const commandArg &lhs, +- const commandArg &rhs) ++friend bool operator< (commandArg &lhs, ++ commandArg &rhs) + { + if ( lhs.GetName() < rhs.GetName() ) + return true; -- GitLab From 8a4c1d8fab0c700d8b32108e1d40dd77289a7fa2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 12 May 2015 22:09:26 +0200 Subject: [PATCH 1055/1217] add MD5sum for SaguaroGW source tarball --- .../easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb index e922e754a3..994bf42a7a 100644 --- a/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb @@ -14,6 +14,7 @@ toolchainopts = {'openmp': True} source_urls = ['http://sourceforge.net/code-snapshots/svn/s/sa/saguarogw/code/'] # SVN revision r29 sources = ['%(namelower)s-code-29.zip'] +checksums = ['d8549fa4c8b69f5bcb50742c41f4fd4e'] patches = ['SaguaroGW_icpc-drop-const.patch'] -- GitLab From 4a76afbf4b79f2881f62f7352ee47fcc2e05937d Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 2 Dec 2014 12:33:57 +0100 Subject: [PATCH 1057/1217] Added Boost for ictce-7.1.2 --- .../Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb new file mode 100644 index 0000000000..d29dcc1cda --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb @@ -0,0 +1,28 @@ +name = 'Boost' +version = '1.55.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +patches = ['intellinuxjam_fPIC.patch', 'boost-impi5.patch'] + +pythonversion = '2.7.8' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +osdependencies = [('zlib-devel','zlib1g-dev')] + +moduleclass = 'devel' -- GitLab From d87786a613a0fc99572a3bd415e11662073f0f0d Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 2 Dec 2014 12:34:59 +0100 Subject: [PATCH 1058/1217] Added GROMACS 5.0.2 --- .../g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb | 42 +++++++++++++++++++ 1 file changed, 42 insertions(+) create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb new file mode 100644 index 0000000000..5e23be1026 --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb @@ -0,0 +1,42 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# George Tsouloupas , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html +## +name = 'GROMACS' +version = '5.0.2' +versionsuffix = '-mt' + +homepage = 'http://www.gromacs.org' +description = """GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'openmp': True, 'usempi': False} + +source_urls = [ + 'ftp://ftp.gromacs.org/pub/gromacs/', + 'http://gerrit.gromacs.org/download/', +] + +sources = [ + SOURCELOWER_TAR_GZ, +# seems to have disappeared? +# 'regressiontests-5.0.2.tar.gz', +] + +builddependencies = [ + ('CMake', '2.8.12'), + ('libxml2', '2.9.1') +] + +dependencies = [('Boost', '1.55.0', '-Python-2.7.8')] + +moduleclass = 'bio' -- GitLab From 3bce5c75ec8ff9e05fbf0bfda372b549384fb88a Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 2 Dec 2014 13:50:39 +0100 Subject: [PATCH 1059/1217] Added forgotten Boost patch --- .../easyconfigs/b/Boost/boost-impi5.patch | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/boost-impi5.patch diff --git a/easybuild/easyconfigs/b/Boost/boost-impi5.patch b/easybuild/easyconfigs/b/Boost/boost-impi5.patch new file mode 100644 index 0000000000..635da12964 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/boost-impi5.patch @@ -0,0 +1,37 @@ +diff -ur boost_1_55_0.orig/tools/build/v2/tools/mpi.jam boost_1_55_0/tools/build/v2/tools/mpi.jam +--- boost_1_55_0.orig/tools/build/v2/tools/mpi.jam 2012-04-26 23:32:41.000000000 +0200 ++++ boost_1_55_0/tools/build/v2/tools/mpi.jam 2014-09-03 13:45:45.000000000 +0200 +@@ -301,6 +301,16 @@ + } + # OpenMPI and newer versions of LAM-MPI have -showme:compile and + # -showme:link. ++ # Look for MPICH ++ else if [ safe-shell-command "$(command) -show" ] ++ { ++ if $(.debug-configuration) ++ { ++ ECHO "Found MPICH wrapper compiler: $(command)" ; ++ } ++ compile_flags = [ SHELL "$(command) -compile_info" ] ; ++ link_flags = [ SHELL "$(command) -link_info" ] ; ++ } + else if [ safe-shell-command "$(command) -showme:compile" ] && + [ safe-shell-command "$(command) -showme:link" ] + { +@@ -327,16 +337,6 @@ + + result = [ SHELL "$(command) -showme" ] ; + } +- # Look for MPICH +- else if [ safe-shell-command "$(command) -show" ] +- { +- if $(.debug-configuration) +- { +- ECHO "Found MPICH wrapper compiler: $(command)" ; +- } +- compile_flags = [ SHELL "$(command) -compile_info" ] ; +- link_flags = [ SHELL "$(command) -link_info" ] ; +- } + # Sun HPC and Ibm POE + else if [ SHELL "$(command) -v 2>/dev/null" ] + { -- GitLab From 74d3f2808207c46f434390cb41480c539671a58f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 12 May 2015 21:57:32 +0200 Subject: [PATCH 1060/1217] drop non-existing source URL, remove uncommented source tarball for regressiontests --- .../g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb | 12 ++---------- 1 file changed, 2 insertions(+), 10 deletions(-) diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb index 5e23be1026..b6b649c1ec 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb @@ -21,16 +21,8 @@ description = """GROMACS is a versatile package to perform molecular dynamics, toolchain = {'name': 'ictce', 'version': '7.1.2'} toolchainopts = {'openmp': True, 'usempi': False} -source_urls = [ - 'ftp://ftp.gromacs.org/pub/gromacs/', - 'http://gerrit.gromacs.org/download/', -] - -sources = [ - SOURCELOWER_TAR_GZ, -# seems to have disappeared? -# 'regressiontests-5.0.2.tar.gz', -] +source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] +sources = [SOURCELOWER_TAR_GZ] builddependencies = [ ('CMake', '2.8.12'), -- GitLab From 0c3e0073a7d4fd768f2bbbc753ede3023134ab15 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 12 May 2015 19:03:53 +0200 Subject: [PATCH 1061/1217] {bio}[intel/2015a] GROMACS 5.0.4 (mt, hybrid) --- .../GROMACS-5.0.4-intel-2015a-hybrid.eb | 42 +++++++++++++++++++ .../g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb | 42 +++++++++++++++++++ 2 files changed, 84 insertions(+) create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb new file mode 100644 index 0000000000..954bb885eb --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb @@ -0,0 +1,42 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# George Tsouloupas , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html +## +name = 'GROMACS' +version = '5.0.4' +versionsuffix = '-hybrid' + +homepage = 'http://www.gromacs.org' +description = """GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'openmp': True, 'usempi': True} + +source_urls = [ + 'ftp://ftp.gromacs.org/pub/gromacs/', + 'http://gerrit.gromacs.org/download/', +] + +sources = [ + SOURCELOWER_TAR_GZ, +# seems to have disappeared? +# 'regressiontests-5.0.2.tar.gz', +] + +builddependencies = [ + ('CMake', '3.2.2'), + ('libxml2', '2.9.2') +] + +dependencies = [('Boost', '1.58.0', '-Python-2.7.9')] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb new file mode 100644 index 0000000000..ea167cc786 --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb @@ -0,0 +1,42 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# George Tsouloupas , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html +## +name = 'GROMACS' +version = '5.0.4' +versionsuffix = '-mt' + +homepage = 'http://www.gromacs.org' +description = """GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'openmp': True, 'usempi': False} + +source_urls = [ + 'ftp://ftp.gromacs.org/pub/gromacs/', + 'http://gerrit.gromacs.org/download/', +] + +sources = [ + SOURCELOWER_TAR_GZ, +# seems to have disappeared? +# 'regressiontests-5.0.2.tar.gz', +] + +builddependencies = [ + ('CMake', '3.2.2'), + ('libxml2', '2.9.2') +] + +dependencies = [('Boost', '1.58.0', '-Python-2.7.9')] + +moduleclass = 'bio' -- GitLab From 004eb26fd47c91b8d1093bd7be9263b6369629cd Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 12 May 2015 19:06:56 +0200 Subject: [PATCH 1063/1217] drop non-existing source URL, remove uncommented source tarball for regressiontests --- .../g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb | 12 ++---------- .../g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb | 12 ++---------- 2 files changed, 4 insertions(+), 20 deletions(-) diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb index 954bb885eb..0914af5ffd 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb @@ -21,16 +21,8 @@ description = """GROMACS is a versatile package to perform molecular dynamics, toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'openmp': True, 'usempi': True} -source_urls = [ - 'ftp://ftp.gromacs.org/pub/gromacs/', - 'http://gerrit.gromacs.org/download/', -] - -sources = [ - SOURCELOWER_TAR_GZ, -# seems to have disappeared? -# 'regressiontests-5.0.2.tar.gz', -] +source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] +sources = [SOURCELOWER_TAR_GZ] builddependencies = [ ('CMake', '3.2.2'), diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb index ea167cc786..f0da8f6053 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb @@ -21,16 +21,8 @@ description = """GROMACS is a versatile package to perform molecular dynamics, toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'openmp': True, 'usempi': False} -source_urls = [ - 'ftp://ftp.gromacs.org/pub/gromacs/', - 'http://gerrit.gromacs.org/download/', -] - -sources = [ - SOURCELOWER_TAR_GZ, -# seems to have disappeared? -# 'regressiontests-5.0.2.tar.gz', -] +source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] +sources = [SOURCELOWER_TAR_GZ] builddependencies = [ ('CMake', '3.2.2'), -- GitLab From 9b3e2a9aef90b62b554a9d2f2428ee41fe239ec2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 13 May 2015 09:51:36 +0200 Subject: [PATCH 1065/1217] drop source_urls that are not guaranteed to work --- .../easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb index 994bf42a7a..897d3c2fd1 100644 --- a/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb @@ -11,8 +11,7 @@ the genome.""" toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'openmp': True} -source_urls = ['http://sourceforge.net/code-snapshots/svn/s/sa/saguarogw/code/'] -# SVN revision r29 +# SVN revision r29, download via http://sourceforge.net/p/saguarogw/code/29/tree/ ('Download Snapshot' link) sources = ['%(namelower)s-code-29.zip'] checksums = ['d8549fa4c8b69f5bcb50742c41f4fd4e'] -- GitLab From 2ec310d55af639adf4b321f603fa8eb459196c24 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Wed, 13 May 2015 12:06:31 +0200 Subject: [PATCH 1066/1217] added python 3.4.1 with intel 2015a toolchain --- .../p/Python/Python-3.4.1-intel-2015a.eb | 103 ++++++++++++++++++ 1 file changed, 103 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb new file mode 100644 index 0000000000..5769376b00 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb @@ -0,0 +1,103 @@ +name = 'Python' +version = '3.4.1' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.8.1' +scipyversion = '0.14.0' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# libffi build in python is still broken, see http://bugs.python.org/issue4130 +patches = ['python-3.4_libffi-include-xmmintrin.patch'] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# order is important! +# Version updated 08/JULY/2014 +exts_list = [ + ('setuptools', '5.4.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '1.5.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.3', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-%s-mkl.patch' % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.9.1', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + # tarball has changed upstream, so make sure we get the right version by verifying the checksum + 'checksums': ['ce61468d4c1263e3005737bbed2641f0'], + }), + ('Cython', '0.20.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.7.3', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.2', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.14.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), +] + +moduleclass = 'lang' -- GitLab From 7c14eff85d3a767241c9f1b6f12a1f02e44b1ac4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 13 May 2015 14:07:27 +0200 Subject: [PATCH 1067/1217] remove checksum, tarball is generated on the fly and checksum changes --- .../easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb index 897d3c2fd1..6edbc50c07 100644 --- a/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb @@ -13,7 +13,6 @@ toolchainopts = {'openmp': True} # SVN revision r29, download via http://sourceforge.net/p/saguarogw/code/29/tree/ ('Download Snapshot' link) sources = ['%(namelower)s-code-29.zip'] -checksums = ['d8549fa4c8b69f5bcb50742c41f4fd4e'] patches = ['SaguaroGW_icpc-drop-const.patch'] -- GitLab From b814e63fbf2f108f325f3abf42fa0fb222f27917 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 13 May 2015 14:14:58 +0200 Subject: [PATCH 1068/1217] bump extension versions in Python 3.4.3 easyconfig --- .../p/Python/Python-3.4.3-intel-2015a.eb | 30 +++++++++---------- 1 file changed, 15 insertions(+), 15 deletions(-) diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb index d0fad95102..a2c2596145 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb @@ -7,8 +7,8 @@ description = "Python is a programming language that lets you work more quickly toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'pic': True, 'opt': True, 'optarch': True} -numpyversion = '1.9.1' -scipyversion = '0.14.1' +numpyversion = '1.9.2' +scipyversion = '0.15.1' source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] sources = [SOURCE_TGZ] @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's # nice to have an up to date openssl for security reasons ] @@ -29,13 +29,13 @@ osdependencies = [('openssl-devel', 'libssl-dev')] # package versions updated Jan 19th 2015 exts_filter = ('PYTHONPATH="%(installdir)s:$PYTHONPATH python -c "import %(ext_name)s"', '') exts_list = [ - ('setuptools', '11.3.1', { + ('setuptools', '15.2', { 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], }), - ('pip', '6.0.6', { + ('pip', '6.1.1', { 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], }), - ('nose', '1.3.4', { + ('nose', '1.3.6', { 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { @@ -56,32 +56,32 @@ exts_list = [ ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], }), - ('argparse', '1.2.1', { + ('argparse', '1.3.0', { 'source_urls': ['http://argparse.googlecode.com/files/'], }), - ('pbr', '0.10.8', { + ('pbr', '0.11.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], }), ('lockfile', '0.10.2', { 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], }), - ('Cython', '0.21.2', { + ('Cython', '0.22', { 'source_urls': ['http://www.cython.org/release/'], }), ('six', '1.9.0', { 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], }), - ('dateutil', '2.4.0', { + ('dateutil', '2.4.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], }), - ('deap', '1.0.1', { + ('deap', '1.0.2', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], }), - ('decorator', '3.4.0', { + ('decorator', '3.4.2', { 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], }), - ('arff', '2.0.1', { + ('arff', '2.0.2', { 'source_tmpl': 'liac-%(name)s-%(version)s.zip', 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], }), @@ -89,7 +89,7 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), - ('ecdsa', '0.11', { + ('ecdsa', '0.13', { 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], }), ('paramiko', '1.15.2', { @@ -101,7 +101,7 @@ exts_list = [ ('netifaces', '0.10.4', { 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], }), - ('netaddr', '0.7.13', { + ('netaddr', '0.7.14', { 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], }), ] -- GitLab From bfc912718ffdaf2b07149143595abc3c3ad7ade1 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 13 May 2015 14:20:45 +0200 Subject: [PATCH 1069/1217] fix argparse source URL --- easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb index a2c2596145..eca8e6a7b9 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb @@ -57,7 +57,7 @@ exts_list = [ 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.3.0', { - 'source_urls': ['http://argparse.googlecode.com/files/'], + 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], }), ('pbr', '0.11.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], -- GitLab From f4b269542e2687feab55a0a7e8b6a6e91534974b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 13 May 2015 14:25:24 +0200 Subject: [PATCH 1070/1217] fix deap source template --- easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb index eca8e6a7b9..9e5af7e518 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb @@ -76,6 +76,7 @@ exts_list = [ 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.2', { + 'source_tmpl': '%(name)s-%(version)s.post1.tar.gz', 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], }), ('decorator', '3.4.2', { -- GitLab From 8196de12be7227bd95d891f4b0229974abae8c3b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 13 May 2015 14:41:14 +0200 Subject: [PATCH 1071/1217] {system}[intel/2015a] OpenSSL 1.0.1m --- .../o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb | 24 ++ .../OpenSSL/OpenSSL-1.0.1m_fix-parallel.patch | 343 ++++++++++++++++++ .../o/OpenSSL/OpenSSL-1.0.1m_icc-fixes.patch | 116 ++++++ 3 files changed, 483 insertions(+) create mode 100644 easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb create mode 100644 easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m_fix-parallel.patch create mode 100644 easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m_icc-fixes.patch diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb new file mode 100644 index 0000000000..7665ce0775 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb @@ -0,0 +1,24 @@ +name = 'OpenSSL' +version = '1.0.1m' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +patches = [ + 'OpenSSL-%(version)s_icc-fixes.patch', + 'OpenSSL-%(version)s-fix_parallel_build-1.patch', +] + +dependencies = [('zlib', '1.2.8')] + +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m_fix-parallel.patch b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m_fix-parallel.patch new file mode 100644 index 0000000000..e30b04902b --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m_fix-parallel.patch @@ -0,0 +1,343 @@ +Fixes build with make -jx, where x is greater than 1 +based on patch for 1.0.1e by Armin K. +diff -ru openssl-1.0.1m.orig/crypto/Makefile openssl-1.0.1m/crypto/Makefile +--- openssl-1.0.1m.orig/crypto/Makefile 2015-03-19 14:38:24.000000000 +0100 ++++ openssl-1.0.1m/crypto/Makefile 2015-03-31 12:14:56.071786835 +0200 +@@ -85,11 +85,11 @@ + @if [ -z "$(THIS)" ]; then $(MAKE) -f $(TOP)/Makefile reflect THIS=$@; fi + + subdirs: +- @target=all; $(RECURSIVE_MAKE) ++ +@target=all; $(RECURSIVE_MAKE) + + files: + $(PERL) $(TOP)/util/files.pl Makefile >> $(TOP)/MINFO +- @target=files; $(RECURSIVE_MAKE) ++ +@target=files; $(RECURSIVE_MAKE) + + links: + @$(PERL) $(TOP)/util/mklink.pl ../include/openssl $(EXHEADER) +@@ -100,7 +100,7 @@ + # lib: $(LIB): are splitted to avoid end-less loop + lib: $(LIB) + @touch lib +-$(LIB): $(LIBOBJ) ++$(LIB): $(LIBOBJ) | subdirs + $(AR) $(LIB) $(LIBOBJ) + [ -z "$(FIPSLIBDIR)" ] || $(AR) $(LIB) $(FIPSLIBDIR)fipscanister.o + $(RANLIB) $(LIB) || echo Never mind. +@@ -111,7 +111,7 @@ + fi + + libs: +- @target=lib; $(RECURSIVE_MAKE) ++ +@target=lib; $(RECURSIVE_MAKE) + + install: + @[ -n "$(INSTALLTOP)" ] # should be set by top Makefile... +@@ -120,7 +120,7 @@ + (cp $$i $(INSTALL_PREFIX)$(INSTALLTOP)/include/openssl/$$i; \ + chmod 644 $(INSTALL_PREFIX)$(INSTALLTOP)/include/openssl/$$i ); \ + done; +- @target=install; $(RECURSIVE_MAKE) ++ +@target=install; $(RECURSIVE_MAKE) + + lint: + @target=lint; $(RECURSIVE_MAKE) +diff -ru openssl-1.0.1m.orig/engines/Makefile openssl-1.0.1m/engines/Makefile +--- openssl-1.0.1m.orig/engines/Makefile 2015-03-19 14:38:35.000000000 +0100 ++++ openssl-1.0.1m/engines/Makefile 2015-03-31 12:14:56.071786835 +0200 +@@ -72,7 +72,7 @@ + + all: lib subdirs + +-lib: $(LIBOBJ) ++lib: $(LIBOBJ) | subdirs + @if [ -n "$(SHARED_LIBS)" ]; then \ + set -e; \ + for l in $(LIBNAMES); do \ +@@ -89,7 +89,7 @@ + + subdirs: + echo $(EDIRS) +- @target=all; $(RECURSIVE_MAKE) ++ +@target=all; $(RECURSIVE_MAKE) + + files: + $(PERL) $(TOP)/util/files.pl Makefile >> $(TOP)/MINFO +@@ -128,7 +128,7 @@ + mv -f $(INSTALL_PREFIX)$(INSTALLTOP)/$(LIBDIR)/engines/$$pfx$$l$$sfx.new $(INSTALL_PREFIX)$(INSTALLTOP)/$(LIBDIR)/engines/$$pfx$$l$$sfx ); \ + done; \ + fi +- @target=install; $(RECURSIVE_MAKE) ++ +@target=install; $(RECURSIVE_MAKE) + + tags: + ctags $(SRC) +diff -ru openssl-1.0.1m.orig/Makefile.org openssl-1.0.1m/Makefile.org +--- openssl-1.0.1m.orig/Makefile.org 2015-03-19 14:37:10.000000000 +0100 ++++ openssl-1.0.1m/Makefile.org 2015-03-31 12:14:56.071786835 +0200 +@@ -273,17 +273,17 @@ + build_libs: build_crypto build_ssl build_engines + + build_crypto: +- @dir=crypto; target=all; $(BUILD_ONE_CMD) +-build_ssl: +- @dir=ssl; target=all; $(BUILD_ONE_CMD) +-build_engines: +- @dir=engines; target=all; $(BUILD_ONE_CMD) +-build_apps: +- @dir=apps; target=all; $(BUILD_ONE_CMD) +-build_tests: +- @dir=test; target=all; $(BUILD_ONE_CMD) +-build_tools: +- @dir=tools; target=all; $(BUILD_ONE_CMD) ++ +@dir=crypto; target=all; $(BUILD_ONE_CMD) ++build_ssl: build_crypto ++ +@dir=ssl; target=all; $(BUILD_ONE_CMD) ++build_engines: build_crypto ++ +@dir=engines; target=all; $(BUILD_ONE_CMD) ++build_apps: build_libs ++ +@dir=apps; target=all; $(BUILD_ONE_CMD) ++build_tests: build_libs ++ +@dir=test; target=all; $(BUILD_ONE_CMD) ++build_tools: build_libs ++ +@dir=tools; target=all; $(BUILD_ONE_CMD) + + all_testapps: build_libs build_testapps + build_testapps: +@@ -538,9 +538,9 @@ + dist_pem_h: + (cd crypto/pem; $(MAKE) -e $(BUILDENV) pem.h; $(MAKE) clean) + +-install: all install_docs install_sw ++install: install_docs install_sw + +-install_sw: ++install_dirs: + @$(PERL) $(TOP)/util/mkdir-p.pl $(INSTALL_PREFIX)$(INSTALLTOP)/bin \ + $(INSTALL_PREFIX)$(INSTALLTOP)/$(LIBDIR) \ + $(INSTALL_PREFIX)$(INSTALLTOP)/$(LIBDIR)/engines \ +@@ -549,12 +549,19 @@ + $(INSTALL_PREFIX)$(OPENSSLDIR)/misc \ + $(INSTALL_PREFIX)$(OPENSSLDIR)/certs \ + $(INSTALL_PREFIX)$(OPENSSLDIR)/private ++ @$(PERL) $(TOP)/util/mkdir-p.pl \ ++ $(INSTALL_PREFIX)$(MANDIR)/man1 \ ++ $(INSTALL_PREFIX)$(MANDIR)/man3 \ ++ $(INSTALL_PREFIX)$(MANDIR)/man5 \ ++ $(INSTALL_PREFIX)$(MANDIR)/man7 ++ ++install_sw: install_dirs + @set -e; headerlist="$(EXHEADER)"; for i in $$headerlist;\ + do \ + (cp $$i $(INSTALL_PREFIX)$(INSTALLTOP)/include/openssl/$$i; \ + chmod 644 $(INSTALL_PREFIX)$(INSTALLTOP)/include/openssl/$$i ); \ + done; +- @set -e; target=install; $(RECURSIVE_BUILD_CMD) ++ +@set -e; target=install; $(RECURSIVE_BUILD_CMD) + @set -e; liblist="$(LIBS)"; for i in $$liblist ;\ + do \ + if [ -f "$$i" ]; then \ +@@ -634,12 +641,7 @@ + done; \ + done + +-install_docs: +- @$(PERL) $(TOP)/util/mkdir-p.pl \ +- $(INSTALL_PREFIX)$(MANDIR)/man1 \ +- $(INSTALL_PREFIX)$(MANDIR)/man3 \ +- $(INSTALL_PREFIX)$(MANDIR)/man5 \ +- $(INSTALL_PREFIX)$(MANDIR)/man7 ++install_docs: install_dirs + @pod2man="`cd ./util; ./pod2mantest $(PERL)`"; \ + here="`pwd`"; \ + filecase=; \ +diff -ru openssl-1.0.1m.orig/Makefile.shared openssl-1.0.1m/Makefile.shared +--- openssl-1.0.1m.orig/Makefile.shared 2015-01-20 13:33:36.000000000 +0100 ++++ openssl-1.0.1m/Makefile.shared 2015-03-31 12:14:56.071786835 +0200 +@@ -105,6 +105,7 @@ + SHAREDFLAGS="$${SHAREDFLAGS:-$(CFLAGS) $(SHARED_LDFLAGS)}"; \ + LIBPATH=`for x in $$LIBDEPS; do echo $$x; done | sed -e 's/^ *-L//;t' -e d | uniq`; \ + LIBPATH=`echo $$LIBPATH | sed -e 's/ /:/g'`; \ ++ [ -e $$SHLIB$$SHLIB_SOVER$$SHLIB_SUFFIX ] && exit 0; \ + LD_LIBRARY_PATH=$$LIBPATH:$$LD_LIBRARY_PATH \ + $${SHAREDCMD} $${SHAREDFLAGS} \ + -o $$SHLIB$$SHLIB_SOVER$$SHLIB_SUFFIX \ +@@ -122,6 +123,7 @@ + done; \ + fi; \ + if [ -n "$$SHLIB_SOVER" ]; then \ ++ [ -e "$$SHLIB$$SHLIB_SUFFIX" ] || \ + ( $(SET_X); rm -f $$SHLIB$$SHLIB_SUFFIX; \ + ln -s $$prev $$SHLIB$$SHLIB_SUFFIX ); \ + fi; \ +diff -ru openssl-1.0.1m.orig/test/Makefile openssl-1.0.1m/test/Makefile +--- openssl-1.0.1m.orig/test/Makefile 2015-03-19 14:38:37.000000000 +0100 ++++ openssl-1.0.1m/test/Makefile 2015-03-31 12:16:53.684158416 +0200 +@@ -130,7 +130,7 @@ + tags: + ctags $(SRC) + +-tests: exe apps $(TESTS) ++tests: exe $(TESTS) + + apps: + @(cd ..; $(MAKE) DIRS=apps all) +@@ -388,118 +388,118 @@ + link_app.$${shlib_target} + + $(RSATEST)$(EXE_EXT): $(RSATEST).o $(DLIBCRYPTO) +- @target=$(RSATEST); $(BUILD_CMD) ++ +@target=$(RSATEST); $(BUILD_CMD) + + $(BNTEST)$(EXE_EXT): $(BNTEST).o $(DLIBCRYPTO) +- @target=$(BNTEST); $(BUILD_CMD) ++ +@target=$(BNTEST); $(BUILD_CMD) + + $(ECTEST)$(EXE_EXT): $(ECTEST).o $(DLIBCRYPTO) +- @target=$(ECTEST); $(BUILD_CMD) ++ +@target=$(ECTEST); $(BUILD_CMD) + + $(EXPTEST)$(EXE_EXT): $(EXPTEST).o $(DLIBCRYPTO) +- @target=$(EXPTEST); $(BUILD_CMD) ++ +@target=$(EXPTEST); $(BUILD_CMD) + + $(IDEATEST)$(EXE_EXT): $(IDEATEST).o $(DLIBCRYPTO) +- @target=$(IDEATEST); $(BUILD_CMD) ++ +@target=$(IDEATEST); $(BUILD_CMD) + + $(MD2TEST)$(EXE_EXT): $(MD2TEST).o $(DLIBCRYPTO) +- @target=$(MD2TEST); $(BUILD_CMD) ++ +@target=$(MD2TEST); $(BUILD_CMD) + + $(SHATEST)$(EXE_EXT): $(SHATEST).o $(DLIBCRYPTO) +- @target=$(SHATEST); $(BUILD_CMD) ++ +@target=$(SHATEST); $(BUILD_CMD) + + $(SHA1TEST)$(EXE_EXT): $(SHA1TEST).o $(DLIBCRYPTO) +- @target=$(SHA1TEST); $(BUILD_CMD) ++ +@target=$(SHA1TEST); $(BUILD_CMD) + + $(SHA256TEST)$(EXE_EXT): $(SHA256TEST).o $(DLIBCRYPTO) +- @target=$(SHA256TEST); $(BUILD_CMD) ++ +@target=$(SHA256TEST); $(BUILD_CMD) + + $(SHA512TEST)$(EXE_EXT): $(SHA512TEST).o $(DLIBCRYPTO) +- @target=$(SHA512TEST); $(BUILD_CMD) ++ +@target=$(SHA512TEST); $(BUILD_CMD) + + $(RMDTEST)$(EXE_EXT): $(RMDTEST).o $(DLIBCRYPTO) +- @target=$(RMDTEST); $(BUILD_CMD) ++ +@target=$(RMDTEST); $(BUILD_CMD) + + $(MDC2TEST)$(EXE_EXT): $(MDC2TEST).o $(DLIBCRYPTO) +- @target=$(MDC2TEST); $(BUILD_CMD) ++ +@target=$(MDC2TEST); $(BUILD_CMD) + + $(MD4TEST)$(EXE_EXT): $(MD4TEST).o $(DLIBCRYPTO) +- @target=$(MD4TEST); $(BUILD_CMD) ++ +@target=$(MD4TEST); $(BUILD_CMD) + + $(MD5TEST)$(EXE_EXT): $(MD5TEST).o $(DLIBCRYPTO) +- @target=$(MD5TEST); $(BUILD_CMD) ++ +@target=$(MD5TEST); $(BUILD_CMD) + + $(HMACTEST)$(EXE_EXT): $(HMACTEST).o $(DLIBCRYPTO) +- @target=$(HMACTEST); $(BUILD_CMD) ++ +@target=$(HMACTEST); $(BUILD_CMD) + + $(WPTEST)$(EXE_EXT): $(WPTEST).o $(DLIBCRYPTO) +- @target=$(WPTEST); $(BUILD_CMD) ++ +@target=$(WPTEST); $(BUILD_CMD) + + $(RC2TEST)$(EXE_EXT): $(RC2TEST).o $(DLIBCRYPTO) +- @target=$(RC2TEST); $(BUILD_CMD) ++ +@target=$(RC2TEST); $(BUILD_CMD) + + $(BFTEST)$(EXE_EXT): $(BFTEST).o $(DLIBCRYPTO) +- @target=$(BFTEST); $(BUILD_CMD) ++ +@target=$(BFTEST); $(BUILD_CMD) + + $(CASTTEST)$(EXE_EXT): $(CASTTEST).o $(DLIBCRYPTO) +- @target=$(CASTTEST); $(BUILD_CMD) ++ +@target=$(CASTTEST); $(BUILD_CMD) + + $(RC4TEST)$(EXE_EXT): $(RC4TEST).o $(DLIBCRYPTO) +- @target=$(RC4TEST); $(BUILD_CMD) ++ +@target=$(RC4TEST); $(BUILD_CMD) + + $(RC5TEST)$(EXE_EXT): $(RC5TEST).o $(DLIBCRYPTO) +- @target=$(RC5TEST); $(BUILD_CMD) ++ +@target=$(RC5TEST); $(BUILD_CMD) + + $(DESTEST)$(EXE_EXT): $(DESTEST).o $(DLIBCRYPTO) +- @target=$(DESTEST); $(BUILD_CMD) ++ +@target=$(DESTEST); $(BUILD_CMD) + + $(RANDTEST)$(EXE_EXT): $(RANDTEST).o $(DLIBCRYPTO) +- @target=$(RANDTEST); $(BUILD_CMD) ++ +@target=$(RANDTEST); $(BUILD_CMD) + + $(DHTEST)$(EXE_EXT): $(DHTEST).o $(DLIBCRYPTO) +- @target=$(DHTEST); $(BUILD_CMD) ++ +@target=$(DHTEST); $(BUILD_CMD) + + $(DSATEST)$(EXE_EXT): $(DSATEST).o $(DLIBCRYPTO) +- @target=$(DSATEST); $(BUILD_CMD) ++ +@target=$(DSATEST); $(BUILD_CMD) + + $(METHTEST)$(EXE_EXT): $(METHTEST).o $(DLIBCRYPTO) +- @target=$(METHTEST); $(BUILD_CMD) ++ +@target=$(METHTEST); $(BUILD_CMD) + + $(SSLTEST)$(EXE_EXT): $(SSLTEST).o $(DLIBSSL) $(DLIBCRYPTO) +- @target=$(SSLTEST); $(FIPS_BUILD_CMD) ++ +@target=$(SSLTEST); $(FIPS_BUILD_CMD) + + $(ENGINETEST)$(EXE_EXT): $(ENGINETEST).o $(DLIBCRYPTO) +- @target=$(ENGINETEST); $(BUILD_CMD) ++ +@target=$(ENGINETEST); $(BUILD_CMD) + + $(EVPTEST)$(EXE_EXT): $(EVPTEST).o $(DLIBCRYPTO) +- @target=$(EVPTEST); $(BUILD_CMD) ++ +@target=$(EVPTEST); $(BUILD_CMD) + + $(EVPEXTRATEST)$(EXE_EXT): $(EVPEXTRATEST).o $(DLIBCRYPTO) +- @target=$(EVPEXTRATEST); $(BUILD_CMD) ++ +@target=$(EVPEXTRATEST); $(BUILD_CMD) + + $(ECDSATEST)$(EXE_EXT): $(ECDSATEST).o $(DLIBCRYPTO) +- @target=$(ECDSATEST); $(BUILD_CMD) ++ +@target=$(ECDSATEST); $(BUILD_CMD) + + $(ECDHTEST)$(EXE_EXT): $(ECDHTEST).o $(DLIBCRYPTO) +- @target=$(ECDHTEST); $(BUILD_CMD) ++ +@target=$(ECDHTEST); $(BUILD_CMD) + + $(IGETEST)$(EXE_EXT): $(IGETEST).o $(DLIBCRYPTO) +- @target=$(IGETEST); $(BUILD_CMD) ++ +@target=$(IGETEST); $(BUILD_CMD) + + $(JPAKETEST)$(EXE_EXT): $(JPAKETEST).o $(DLIBCRYPTO) +- @target=$(JPAKETEST); $(BUILD_CMD) ++ +@target=$(JPAKETEST); $(BUILD_CMD) + + $(ASN1TEST)$(EXE_EXT): $(ASN1TEST).o $(DLIBCRYPTO) +- @target=$(ASN1TEST); $(BUILD_CMD) ++ +@target=$(ASN1TEST); $(BUILD_CMD) + + $(SRPTEST)$(EXE_EXT): $(SRPTEST).o $(DLIBCRYPTO) +- @target=$(SRPTEST); $(BUILD_CMD) ++ +@target=$(SRPTEST); $(BUILD_CMD) + + $(HEARTBEATTEST)$(EXE_EXT): $(HEARTBEATTEST).o $(DLIBCRYPTO) +- @target=$(HEARTBEATTEST); $(BUILD_CMD_STATIC) ++ +@target=$(HEARTBEATTEST); $(BUILD_CMD_STATIC) + + $(CONSTTIMETEST)$(EXE_EXT): $(CONSTTIMETEST).o +- @target=$(CONSTTIMETEST) $(BUILD_CMD) ++ +@target=$(CONSTTIMETEST) $(BUILD_CMD) + + #$(AESTEST).o: $(AESTEST).c + # $(CC) -c $(CFLAGS) -DINTERMEDIATE_VALUE_KAT -DTRACE_KAT_MCT $(AESTEST).c diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m_icc-fixes.patch b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m_icc-fixes.patch new file mode 100644 index 0000000000..16ab3306c7 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m_icc-fixes.patch @@ -0,0 +1,116 @@ +based on http://openssl.6102.n7.nabble.com/Compiling-OpenSSL-with-icc-td42304.html (http://cvs.openssl.org/chngview?cn=23036) +diff -ru openssl-1.0.1m.orig/Configure openssl-1.0.1m/Configure +--- openssl-1.0.1m.orig/Configure 2015-03-19 14:37:10.000000000 +0100 ++++ openssl-1.0.1m/Configure 2015-03-31 12:50:44.965133568 +0200 +@@ -351,7 +351,7 @@ + # If you compiler does not, do complement config command line with one! + "linux-armv4", "gcc:-O3 -Wall::-D_REENTRANT::-ldl:BN_LLONG RC4_CHAR RC4_CHUNK DES_INT DES_UNROLL BF_PTR:${armv4_asm}:dlfcn:linux-shared:-fPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR)", + #### IA-32 targets... +-"linux-ia32-icc", "icc:-DL_ENDIAN -O2 -no_cpprt::-D_REENTRANT::-ldl:BN_LLONG ${x86_gcc_des} ${x86_gcc_opts}:${x86_elf_asm}:dlfcn:linux-shared:-KPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR)", ++"linux-ia32-icc", "icc:-DL_ENDIAN -O2::-D_REENTRANT::-ldl -no_cpprt:BN_LLONG ${x86_gcc_des} ${x86_gcc_opts}:${x86_elf_asm}:dlfcn:linux-shared:-KPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR)", + "linux-elf", "gcc:-DL_ENDIAN -O3 -fomit-frame-pointer -Wall::-D_REENTRANT::-ldl:BN_LLONG ${x86_gcc_des} ${x86_gcc_opts}:${x86_elf_asm}:dlfcn:linux-shared:-fPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR)", + "linux-aout", "gcc:-DL_ENDIAN -O3 -fomit-frame-pointer -march=i486 -Wall::(unknown):::BN_LLONG ${x86_gcc_des} ${x86_gcc_opts}:${x86_asm}:a.out", + #### +@@ -359,8 +359,9 @@ + "linux-ppc64", "gcc:-m64 -DB_ENDIAN -O3 -Wall::-D_REENTRANT::-ldl:SIXTY_FOUR_BIT_LONG RC4_CHAR RC4_CHUNK DES_RISC1 DES_UNROLL:${ppc64_asm}:linux64:dlfcn:linux-shared:-fPIC:-m64:.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR):::64", + "linux-ia64", "gcc:-DL_ENDIAN -O3 -Wall::-D_REENTRANT::-ldl:SIXTY_FOUR_BIT_LONG RC4_CHUNK DES_UNROLL DES_INT:${ia64_asm}:dlfcn:linux-shared:-fPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR)", + "linux-ia64-ecc","ecc:-DL_ENDIAN -O2 -Wall -no_cpprt::-D_REENTRANT::-ldl:SIXTY_FOUR_BIT_LONG RC4_CHUNK DES_INT:${ia64_asm}:dlfcn:linux-shared:-fPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR)", +-"linux-ia64-icc","icc:-DL_ENDIAN -O2 -Wall -no_cpprt::-D_REENTRANT::-ldl:SIXTY_FOUR_BIT_LONG RC4_CHUNK DES_RISC1 DES_INT:${ia64_asm}:dlfcn:linux-shared:-fPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR)", ++"linux-ia64-icc","icc:-DL_ENDIAN -O2 -Wall::-D_REENTRANT::-ldl -no_cpprt:SIXTY_FOUR_BIT_LONG RC4_CHUNK DES_RISC1 DES_INT:${ia64_asm}:dlfcn:linux-shared:-fPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR)", + "linux-x86_64", "gcc:-m64 -DL_ENDIAN -O3 -Wall::-D_REENTRANT::-ldl:SIXTY_FOUR_BIT_LONG RC4_CHUNK DES_INT DES_UNROLL:${x86_64_asm}:elf:dlfcn:linux-shared:-fPIC:-m64:.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR):::64", ++"linux-x86_64-icc", "icc:-DL_ENDIAN -DTERMIO -O2::-D_REENTRANT::-ldl -no_cpprt:SIXTY_FOUR_BIT_LONG RC4_CHUNK DES_INT DES_UNROLL:${x86_64_asm}:elf:dlfcn:linux-shared:-fPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR):::64", + "linux64-s390x", "gcc:-m64 -DB_ENDIAN -O3 -Wall::-D_REENTRANT::-ldl:SIXTY_FOUR_BIT_LONG RC4_CHAR RC4_CHUNK DES_INT DES_UNROLL:${s390x_asm}:64:dlfcn:linux-shared:-fPIC:-m64:.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR):::64", + #### So called "highgprs" target for z/Architecture CPUs + # "Highgprs" is kernel feature first implemented in Linux 2.6.32, see +@@ -1416,6 +1417,7 @@ + } + if ($iccver>=8) + { ++ $cflags=~s/\-KPIC/-fPIC/; + # Eliminate unnecessary dependency from libirc.a. This is + # essential for shared library support, as otherwise + # apps/openssl can end up in endless loop upon startup... +@@ -1423,13 +1425,18 @@ + } + if ($iccver>=9) + { +- $cflags.=" -i-static"; +- $cflags=~s/\-no_cpprt/-no-cpprt/; ++ $lflags.=" -i-static"; ++ $lflags=~s/\-no_cpprt/-no-cpprt/; + } + if ($iccver>=10) + { +- $cflags=~s/\-i\-static/-static-intel/; ++ $lflags=~s/\-i\-static/-static-intel/; + } ++ if ($iccver>=11) ++ { ++ $cflags.=" -no-intel-extensions"; # disable Cilk ++ $lflags=~s/\-no\-cpprt/-no-cxxlib/; ++ } + } + + # Unlike other OSes (like Solaris, Linux, Tru64, IRIX) BSD run-time +diff -ru openssl-1.0.1m.orig/crypto/aes/aes_x86core.c openssl-1.0.1m/crypto/aes/aes_x86core.c +--- openssl-1.0.1m.orig/crypto/aes/aes_x86core.c 2015-03-19 14:37:10.000000000 +0100 ++++ openssl-1.0.1m/crypto/aes/aes_x86core.c 2015-03-31 12:28:27.768182812 +0200 +@@ -89,8 +89,10 @@ + #endif + + #undef ROTATE +-#if defined(_MSC_VER) || defined(__ICC) ++#if defined(_MSC_VER) + # define ROTATE(a,n) _lrotl(a,n) ++#elif defined(__ICC) ++# define ROTATE(a,n) _rotl(a,n) + #elif defined(__GNUC__) && __GNUC__>=2 + # if defined(__i386) || defined(__i386__) || defined(__x86_64) || defined(__x86_64__) + # define ROTATE(a,n) ({ register unsigned int ret; \ +diff -ru openssl-1.0.1m.orig/crypto/des/des_locl.h openssl-1.0.1m/crypto/des/des_locl.h +--- openssl-1.0.1m.orig/crypto/des/des_locl.h 2015-03-19 14:37:10.000000000 +0100 ++++ openssl-1.0.1m/crypto/des/des_locl.h 2015-03-31 12:52:29.287245531 +0200 +@@ -162,8 +162,10 @@ + } \ + } + +-# if (defined(OPENSSL_SYS_WIN32) && defined(_MSC_VER)) || defined(__ICC) ++# if (defined(OPENSSL_SYS_WIN32) && defined(_MSC_VER)) + # define ROTATE(a,n) (_lrotr(a,n)) ++#elif defined(__ICC) ++#define ROTATE(a,n) (_rotr(a,n)) + # elif defined(__GNUC__) && __GNUC__>=2 && !defined(__STRICT_ANSI__) && !defined(OPENSSL_NO_ASM) && !defined(OPENSSL_NO_INLINE_ASM) && !defined(PEDANTIC) + # if defined(__i386) || defined(__i386__) || defined(__x86_64) || defined(__x86_64__) + # define ROTATE(a,n) ({ register unsigned int ret; \ +diff -ru openssl-1.0.1m.orig/crypto/md32_common.h openssl-1.0.1m/crypto/md32_common.h +--- openssl-1.0.1m.orig/crypto/md32_common.h 2015-03-19 14:37:10.000000000 +0100 ++++ openssl-1.0.1m/crypto/md32_common.h 2015-03-31 12:53:03.737932332 +0200 +@@ -142,8 +142,10 @@ + */ + #undef ROTATE + #ifndef PEDANTIC +-# if defined(_MSC_VER) || defined(__ICC) ++# if defined(_MSC_VER) + # define ROTATE(a,n) _lrotl(a,n) ++# elif defined(__ICC) ++# define ROTATE(a,n) _rotl(a,n) + # elif defined(__MWERKS__) + # if defined(__POWERPC__) + # define ROTATE(a,n) __rlwinm(a,n,0,31) +diff -ru openssl-1.0.1m.orig/crypto/rc5/rc5_locl.h openssl-1.0.1m/crypto/rc5/rc5_locl.h +--- openssl-1.0.1m.orig/crypto/rc5/rc5_locl.h 2015-03-19 14:37:10.000000000 +0100 ++++ openssl-1.0.1m/crypto/rc5/rc5_locl.h 2015-03-31 12:51:52.976509433 +0200 +@@ -146,9 +146,12 @@ + *((c)++)=(unsigned char)(((l)>> 8L)&0xff), \ + *((c)++)=(unsigned char)(((l) )&0xff)) + +-#if (defined(OPENSSL_SYS_WIN32) && defined(_MSC_VER)) || defined(__ICC) ++#if (defined(OPENSSL_SYS_WIN32) && defined(_MSC_VER)) + # define ROTATE_l32(a,n) _lrotl(a,n) + # define ROTATE_r32(a,n) _lrotr(a,n) ++#elif defined(__ICC) ++#define ROTATE_l32(a,n) _rotl(a,n) ++#define ROTATE_r32(a,n) _rotr(a,n) + #elif defined(__GNUC__) && __GNUC__>=2 && !defined(__STRICT_ANSI__) && !defined(OPENSSL_NO_ASM) && !defined(OPENSSL_NO_INLINE_ASM) && !defined(PEDANTIC) + # if defined(__i386) || defined(__i386__) || defined(__x86_64) || defined(__x86_64__) + # define ROTATE_l32(a,n) ({ register unsigned int ret; \ -- GitLab From ac878e9b4e53948f8642c68c4ee0690edf7be387 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 13 May 2015 15:13:04 +0200 Subject: [PATCH 1072/1217] fix OpenSSL 1.0.1m patch name --- easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb index 7665ce0775..a127a7e7bb 100644 --- a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb @@ -14,7 +14,7 @@ source_urls = ['http://www.openssl.org/source/'] patches = [ 'OpenSSL-%(version)s_icc-fixes.patch', - 'OpenSSL-%(version)s-fix_parallel_build-1.patch', + 'OpenSSL-%(version)s_fix-parallel.patch', ] dependencies = [('zlib', '1.2.8')] -- GitLab From e53a0c251081b0103aaa3eb3fb9d1172ae02bd2b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 13 May 2015 16:21:04 +0200 Subject: [PATCH 1073/1217] include patch for deap extension in Python 3.4.3 easyconfig --- .../p/Python/Python-3.4.3-intel-2015a.eb | 1 + .../easyconfigs/p/Python/deap-1.0.2_no-README.patch | 13 +++++++++++++ 2 files changed, 14 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/deap-1.0.2_no-README.patch diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb index 9e5af7e518..c1fd1209b8 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb @@ -78,6 +78,7 @@ exts_list = [ ('deap', '1.0.2', { 'source_tmpl': '%(name)s-%(version)s.post1.tar.gz', 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + 'patches': ['deap-1.0.2_no-README.patch'], }), ('decorator', '3.4.2', { 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], diff --git a/easybuild/easyconfigs/p/Python/deap-1.0.2_no-README.patch b/easybuild/easyconfigs/p/Python/deap-1.0.2_no-README.patch new file mode 100644 index 0000000000..b88bba0d0c --- /dev/null +++ b/easybuild/easyconfigs/p/Python/deap-1.0.2_no-README.patch @@ -0,0 +1,13 @@ +README.md is not included in tarball, so comment out long description +author: Kenneth Hoste (Ghent University) +--- deap-1.0.2/setup.py.orig 2015-05-13 15:58:21.188127136 +0200 ++++ deap-1.0.2/setup.py 2015-05-13 15:58:30.288556411 +0200 +@@ -19,7 +19,7 @@ + setup(name='deap', + version=deap.__revision__, + description='Distributed Evolutionary Algorithms in Python', +- long_description=read_md('README.md'), ++ #long_description=read_md('README.md'), + author='deap Development Team', + author_email='deap-users@googlegroups.com', + url='https://www.github.com/deap', -- GitLab From 556e7f32fa5f0ac4a159e48a342d7cfa4dee91cd Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 14 May 2015 09:19:11 +0200 Subject: [PATCH 1074/1217] bump subversion for deap extension, drop unnecessary patch --- .../p/Python/Python-3.4.3-intel-2015a.eb | 3 +-- .../easyconfigs/p/Python/deap-1.0.2_no-README.patch | 13 ------------- 2 files changed, 1 insertion(+), 15 deletions(-) delete mode 100644 easybuild/easyconfigs/p/Python/deap-1.0.2_no-README.patch diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb index c1fd1209b8..3265a5bd15 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb @@ -76,9 +76,8 @@ exts_list = [ 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post1.tar.gz', + 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - 'patches': ['deap-1.0.2_no-README.patch'], }), ('decorator', '3.4.2', { 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], diff --git a/easybuild/easyconfigs/p/Python/deap-1.0.2_no-README.patch b/easybuild/easyconfigs/p/Python/deap-1.0.2_no-README.patch deleted file mode 100644 index b88bba0d0c..0000000000 --- a/easybuild/easyconfigs/p/Python/deap-1.0.2_no-README.patch +++ /dev/null @@ -1,13 +0,0 @@ -README.md is not included in tarball, so comment out long description -author: Kenneth Hoste (Ghent University) ---- deap-1.0.2/setup.py.orig 2015-05-13 15:58:21.188127136 +0200 -+++ deap-1.0.2/setup.py 2015-05-13 15:58:30.288556411 +0200 -@@ -19,7 +19,7 @@ - setup(name='deap', - version=deap.__revision__, - description='Distributed Evolutionary Algorithms in Python', -- long_description=read_md('README.md'), -+ #long_description=read_md('README.md'), - author='deap Development Team', - author_email='deap-users@googlegroups.com', - url='https://www.github.com/deap', -- GitLab From f1c2d8e210f7bf638900d83e5e610f97245434f2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 16 May 2015 10:13:15 +0200 Subject: [PATCH 1075/1217] add version 5.2.40 of Cray toolchains + HPL as test case --- .../easyconfigs/c/CrayCCE/CrayCCE-5.2.40.eb | 16 ++++++++++++++ .../easyconfigs/c/CrayGNU/CrayGNU-5.2.40.eb | 16 ++++++++++++++ .../c/CrayIntel/CrayIntel-5.2.40.eb | 16 ++++++++++++++ .../h/HPL/HPL-2.1-CrayCCE-5.2.40.eb | 22 +++++++++++++++++++ .../h/HPL/HPL-2.1-CrayGNU-5.2.40.eb | 18 +++++++++++++++ .../h/HPL/HPL-2.1-CrayIntel-5.2.40.eb | 18 +++++++++++++++ 6 files changed, 106 insertions(+) create mode 100644 easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.40.eb create mode 100644 easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.40.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.40.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.40.eb diff --git a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.40.eb b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.40.eb new file mode 100644 index 0000000000..b31f4b3a23 --- /dev/null +++ b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.40.eb @@ -0,0 +1,16 @@ +easyblock = 'Toolchain' + +name = 'CrayCCE' +version = '5.2.40' + +homepage = '(none)' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-cray module.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('PrgEnv-cray/' + version, EXTERNAL_MODULE), # also loads cray-libsci + ('fftw/3.3.4.2', EXTERNAL_MODULE), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.40.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..dbbbbbd303 --- /dev/null +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.40.eb @@ -0,0 +1,16 @@ +easyblock = 'Toolchain' + +name = 'CrayGNU' +version = '5.2.40' + +homepage = '(none)' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-gnu module.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('PrgEnv-gnu/' + version, EXTERNAL_MODULE), # also loads cray-libsci + ('fftw/3.3.4.2', EXTERNAL_MODULE), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.40.eb b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.40.eb new file mode 100644 index 0000000000..5937accfe4 --- /dev/null +++ b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.40.eb @@ -0,0 +1,16 @@ +easyblock = 'Toolchain' + +name = 'CrayIntel' +version = '5.2.40' + +homepage = '(none)' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-intel module.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('PrgEnv-intel/' + version, EXTERNAL_MODULE), # also loads cray-libsci + ('fftw/3.3.4.2', EXTERNAL_MODULE), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.40.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.40.eb new file mode 100644 index 0000000000..b91a1eb499 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.40.eb @@ -0,0 +1,22 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'CrayCCE', 'version': '5.2.40'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +patches = [ + # fix Make dependencies, so parallel build also works + 'HPL_parallel-make.patch', + 'HPL-2.1_LINKER-ld.patch', +] + +parallel = 1 + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..dcfcc5ca6e --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.40.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.40.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.40.eb new file mode 100644 index 0000000000..8a33b68ad9 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.40.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'CrayIntel', 'version': '5.2.40'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' -- GitLab From f92c4e0cc27bb4f4f910ef6e85ffa1396cff06ab Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 30 Apr 2015 13:36:11 +0200 Subject: [PATCH 1076/1217] bump version to v2.1.x --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 5b55ee3e55..e89248dca4 100644 --- a/setup.py +++ b/setup.py @@ -41,7 +41,7 @@ from distutils import log # note: release candidates should be versioned as a pre-release, e.g. "1.1rc1" # 1.1-rc1 would indicate a post-release, i.e., and update of 1.1, so beware! -VERSION = '2.1.0' +VERSION = '2.1.1dev' API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From 08bfd4bc0cd77f1ea1c4f126925c0b5fc725e4ba Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 30 Apr 2015 21:18:35 +0200 Subject: [PATCH 1077/1217] add easyconfig file for EasyBuild v2.1.0 --- .../e/EasyBuild/EasyBuild-2.1.0.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb new file mode 100644 index 0000000000..d753a18457 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb @@ -0,0 +1,31 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = "2.1.0" + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/v/vsc-base/', + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'vsc-base-2.2.0.tar.gz', + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' -- GitLab From 8eb13ee04f0d3faab28cffe163d3fd83db885d60 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 30 Apr 2015 21:19:52 +0200 Subject: [PATCH 1078/1217] style fix --- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb index d753a18457..b11b8ff6c1 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb @@ -1,7 +1,7 @@ easyblock = 'EB_EasyBuildMeta' name = 'EasyBuild' -version = "2.1.0" +version = '2.1.0' homepage = 'http://hpcugent.github.com/easybuild/' description = """EasyBuild is a software build and installation framework -- GitLab From 55bd896831aea6ec4fdef337370fe3ee8c3dc0ed Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 5 May 2015 18:36:05 +0200 Subject: [PATCH 1079/1217] Boost 1.58 for intel/2015a --- .../Boost-1.58.0-intel-2015a-Python-2.7.9.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.58.0-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.58.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..a209577bba --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,25 @@ +name = 'Boost' +version = '1.58.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +pythonversion = '2.7.9' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' -- GitLab From c4571e54605eba98ff436db0a762a773dc23a8e9 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 5 May 2015 18:37:17 +0200 Subject: [PATCH 1080/1217] Boost 1.58.0 for foss/2015a --- .../Boost-1.58.0-foss-2015a-Python-2.7.9.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..bbef8b760b --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015a-Python-2.7.9.eb @@ -0,0 +1,25 @@ +name = 'Boost' +version = '1.58.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +pythonversion = '2.7.9' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' -- GitLab From 3de5c8412dd0472f36a779f9e0651f057d8863e4 Mon Sep 17 00:00:00 2001 From: Maxime Schmitt Date: Tue, 5 May 2015 16:00:36 +0200 Subject: [PATCH 1081/1217] Adding the easyconfigs for ictce-7.3.5 --- easybuild/easyconfigs/i/icc/icc-2015.3.187.eb | 17 ++++++++++++++ .../i/iccifort/iccifort-2015.3.187.eb | 16 ++++++++++++++ easybuild/easyconfigs/i/ictce/ictce-7.3.5.eb | 21 ++++++++++++++++++ .../easyconfigs/i/ifort/ifort-2015.3.187.eb | 17 ++++++++++++++ easybuild/easyconfigs/i/iimpi/iimpi-7.3.5.eb | 18 +++++++++++++++ .../i/imkl/imkl-11.2.3.187-iimpi-7.3.5.eb | 22 +++++++++++++++++++ .../impi-5.0.3.048-iccifort-2015.3.187.eb | 19 ++++++++++++++++ 7 files changed, 130 insertions(+) create mode 100644 easybuild/easyconfigs/i/icc/icc-2015.3.187.eb create mode 100644 easybuild/easyconfigs/i/iccifort/iccifort-2015.3.187.eb create mode 100644 easybuild/easyconfigs/i/ictce/ictce-7.3.5.eb create mode 100644 easybuild/easyconfigs/i/ifort/ifort-2015.3.187.eb create mode 100644 easybuild/easyconfigs/i/iimpi/iimpi-7.3.5.eb create mode 100644 easybuild/easyconfigs/i/imkl/imkl-11.2.3.187-iimpi-7.3.5.eb create mode 100644 easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187.eb diff --git a/easybuild/easyconfigs/i/icc/icc-2015.3.187.eb b/easybuild/easyconfigs/i/icc/icc-2015.3.187.eb new file mode 100644 index 0000000000..55dec91be5 --- /dev/null +++ b/easybuild/easyconfigs/i/icc/icc-2015.3.187.eb @@ -0,0 +1,17 @@ +name = 'icc' +version = '2015.3.187' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "C and C++ compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_ccompxe_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2015.3.187.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2015.3.187.eb new file mode 100644 index 0000000000..8387432380 --- /dev/null +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2015.3.187.eb @@ -0,0 +1,16 @@ +easyblock = "Toolchain" + +name = 'iccifort' +version = '2015.3.187' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and Intel MKL""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('icc', version), + ('ifort', version), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ictce/ictce-7.3.5.eb b/easybuild/easyconfigs/i/ictce/ictce-7.3.5.eb new file mode 100644 index 0000000000..6190ed2906 --- /dev/null +++ b/easybuild/easyconfigs/i/ictce/ictce-7.3.5.eb @@ -0,0 +1,21 @@ +easyblock = "Toolchain" + +name = 'ictce' +version = '7.3.5' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +suff = '3.187' +compver = '2015.%s' % suff + +dependencies = [ # version/released + ('icc', compver), # Apr 13th 2015 + ('ifort', compver), # Apr 13th 2015 + ('impi', '5.0.3.048', '', ('iccifort', compver)), # Feb 10th 2015 + ('imkl', '11.2.%s' % suff, '', ('iimpi', version)), # Apr 13th 2015 +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.3.187.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.3.187.eb new file mode 100644 index 0000000000..8253a3390b --- /dev/null +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.3.187.eb @@ -0,0 +1,17 @@ +name = 'ifort' +version = '2015.3.187' + +homepage = 'http://software.intel.com/en-us/intel-compilers/' +description = "Fortran compiler from Intel" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['l_fcompxe_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-7.3.5.eb b/easybuild/easyconfigs/i/iimpi/iimpi-7.3.5.eb new file mode 100644 index 0000000000..b0fe67cb26 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-7.3.5.eb @@ -0,0 +1,18 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '7.3.5' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2015.3.187' +dependencies = [ + ('icc', compver), + ('ifort', compver), + ('impi', '5.0.3.048', '', ('iccifort', compver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.2.3.187-iimpi-7.3.5.eb b/easybuild/easyconfigs/i/imkl/imkl-11.2.3.187-iimpi-7.3.5.eb new file mode 100644 index 0000000000..807b5f2004 --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.2.3.187-iimpi-7.3.5.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.2.3.187' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '7.3.5'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +interfaces = True + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187.eb b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187.eb new file mode 100644 index 0000000000..5e0972d8f3 --- /dev/null +++ b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187.eb @@ -0,0 +1,19 @@ +name = 'impi' +version = '5.0.3.048' + +homepage = 'http://software.intel.com/en-us/intel-mpi-library/' +description = """The Intel(R) MPI Library for Linux* OS is a multi-fabric message + passing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library for + Linux OS implements the Message Passing Interface, version 2 (MPI-2) specification.""" + +toolchain = {'name': 'iccifort', 'version': '2015.3.187'} + +sources = ['l_mpi_p_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +moduleclass = 'mpi' -- GitLab From 38226e59dc0659a6ccc047c7712d0f135eb193e8 Mon Sep 17 00:00:00 2001 From: Maxime Schmitt Date: Wed, 6 May 2015 11:31:15 +0200 Subject: [PATCH 1082/1217] Adding HPL 2.1 with ictce-7.3.5 --- .../easyconfigs/h/HPL/HPL-2.1-ictce-7.3.5.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-ictce-7.3.5.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-ictce-7.3.5.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-ictce-7.3.5.eb new file mode 100644 index 0000000000..55ab924d7d --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-ictce-7.3.5.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'ictce', 'version': '7.3.5'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' -- GitLab From e59e7fca0b6840ae516121c9eaa8d11669239568 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Wed, 20 Aug 2014 13:46:16 +0200 Subject: [PATCH 1083/1217] added new cutadapt for intel --- .../cutadapt-1.5-intel2014b-Python-2.7.8.eb | 33 +++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel2014b-Python-2.7.8.eb diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel2014b-Python-2.7.8.eb new file mode 100644 index 0000000000..9be9435a32 --- /dev/null +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel2014b-Python-2.7.8.eb @@ -0,0 +1,33 @@ +easyblock = "PythonPackage" + +name = 'cutadapt' +version = '1.5' + +homepage = 'http://code.google.com/p/cutadapt/' +description = """ cutadapt removes adapter sequences + from high-throughput sequencing data. This is usually + necessary when the read length of the sequencing machine + is longer than the molecule that is sequenced, for + example when sequencing microRNAs. """ + +toolchain = {'name': 'intel', 'version': '2014b'} + +source_urls = ['https://pypi.python.org/packages/source/c/cutadapt/'] +sources = ['%(namelower)s-%(version)s.tar.gz'] + +python = 'Python' +pyver = '2.7.8' +pyshortver = '.'.join(pyver.split('.')[:2]) + +versionsuffix = "-%s-%s" % (python, pyver) + +dependencies = [ + (python, pyver), +] + +sanity_check_paths = { + 'files': ['bin/cutadapt','lib/python2.7/site-packages/cutadapt/_align.so',], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From dad3b10a50135f61257f379827de38173e6d5fe6 Mon Sep 17 00:00:00 2001 From: Jens Date: Mon, 11 May 2015 09:42:44 +0200 Subject: [PATCH 1084/1217] added even newer cutadapt --- ...cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..1c463c28a1 --- /dev/null +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics (SIB) +# Biozentrum - University of Basel + +easyblock = "PythonPackage" + +name = 'cutadapt' +version = '1.8.1' + +homepage = 'http://code.google.com/p/cutadapt/' +description = """ cutadapt removes adapter sequences from high-throughput sequencing data. + This is usually necessary when the read length of the sequencing machine is longer than + the molecule that is sequenced, for example when sequencing microRNAs. """ + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['https://github.com/marcelm/cutadapt/archive/'] +sources = ['v%(version)s.tar.gz'] + +python = 'Python' +pyver = '2.7.9' +pyshortver = '.'.join(pyver.split('.')[:2]) + +versionsuffix = "-%s-%s" % (python, pyver) + +dependencies = [ + (python, pyver), +] + +sanity_check_paths = { + 'files': ['bin/cutadapt',], + 'dirs': [], +} + +moduleclass = 'bio' + -- GitLab From 380614ad77ca07f62bb9f5911deb4688f0f18d51 Mon Sep 17 00:00:00 2001 From: Jens Date: Mon, 11 May 2015 09:56:11 +0200 Subject: [PATCH 1085/1217] fixed filename --- ...b-Python-2.7.8.eb => cutadapt-1.5-intel-2014b-Python-2.7.8.eb} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename easybuild/easyconfigs/c/cutadapt/{cutadapt-1.5-intel2014b-Python-2.7.8.eb => cutadapt-1.5-intel-2014b-Python-2.7.8.eb} (100%) diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb similarity index 100% rename from easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel2014b-Python-2.7.8.eb rename to easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb -- GitLab From cb0e0011875100a86535fd58d74ce3267a94a5e2 Mon Sep 17 00:00:00 2001 From: Jens Date: Mon, 11 May 2015 10:19:56 +0200 Subject: [PATCH 1086/1217] fixed remarks --- .../c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb | 2 +- .../c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb | 3 +-- 2 files changed, 2 insertions(+), 3 deletions(-) diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb index 9be9435a32..8a431e4a45 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb @@ -26,7 +26,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/cutadapt','lib/python2.7/site-packages/cutadapt/_align.so',], + 'files': ['bin/cutadapt','lib/python%s/site-packages/cutadapt/_align.so' % pyshortver], 'dirs': [], } diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb index 1c463c28a1..737e7e93bb 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb @@ -29,9 +29,8 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/cutadapt',], + 'files': ['bin/cutadapt','lib/python%s/site-packages/cutadapt/_align.so' % pyshortver], 'dirs': [], } moduleclass = 'bio' - -- GitLab From 3336fa693a4dfcb0c6b4600380bc025b6f4df6d9 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 11 May 2015 11:14:44 +0200 Subject: [PATCH 1087/1217] add easyconfig for networkx --- ...networkx-1.9.1-intel-2015a-Python-2.7.9.eb | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 easybuild/easyconfigs/n/networkx/networkx-1.9.1-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/n/networkx/networkx-1.9.1-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/n/networkx/networkx-1.9.1-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..f6ae1e74b7 --- /dev/null +++ b/easybuild/easyconfigs/n/networkx/networkx-1.9.1-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,24 @@ +easyblock = 'PythonPackage' + +name = 'networkx' +version = '1.9.1' + +homepage = 'https://pypi.python.org/pypi/networkx' +description = """NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, + and functions of complex networks.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonver = '2.7.9' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +dependencies = [ + (python, pythonver), +] + +moduleclass = 'tools' -- GitLab From 8ce753e79e359f691d042787927bd5577cd1ae12 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 11 May 2015 15:23:36 +0200 Subject: [PATCH 1088/1217] add easyconfig for scikit-learn v0.16.1 --- ...t-learn-0.16.1-intel-2015a-Python-2.7.9.eb | 29 +++++++++++++++++++ 1 file changed, 29 insertions(+) create mode 100644 easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.16.1-intel-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.16.1-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.16.1-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..8b997036dd --- /dev/null +++ b/easybuild/easyconfigs/s/scikit-learn/scikit-learn-0.16.1-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,29 @@ +easyblock = 'PythonPackage' + +name = 'scikit-learn' +version = '0.16.1' + +homepage = 'http://scikit-learn.org/stable/index.html' +description = """Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, +building upon numpy, scipy, and matplotlib. As a machine-learning module, +it provides versatile tools for data mining and analysis in any field of science and engineering. +It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonversion = '2.7.9' +pythonshortversion = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) +dependencies = [ + (python, pythonversion), + ('matplotlib', '1.4.3', versionsuffix), +] + +options = {'modulename': "sklearn"} + +moduleclass = 'data' -- GitLab From 93ce24c124f1004bc7bdb8efd5c8ee30afa64cc7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 12 May 2015 11:37:19 +0200 Subject: [PATCH 1089/1217] add easyconfig for Platanus (binary) --- .../p/Platanus/Platanus-1.2.1-linux-x86_64.eb | 20 +++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100644 easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb diff --git a/easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb b/easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb new file mode 100644 index 0000000000..c7b0660395 --- /dev/null +++ b/easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb @@ -0,0 +1,20 @@ +easyblock = 'Binary' + +name = 'Platanus' +version = '1.2.1' + +homepage = 'http://platanus.bio.titech.ac.jp/' +description = """PLATform for Assembling NUcleotide Sequences""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://platanus.bio.titech.ac.jp/Platanus_release/20130901010201'] +sources = ['platanus'] +checksums = ['02cf92847ec704d010a54df293b9c60a'] + +sanity_check_paths = { + 'files': ['platanus'], + 'dirs': [], +} + +moduleclass = 'bio' -- GitLab From 6980c64b72428c6e0adca021a9fbc6185b418473 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 12 May 2015 14:39:33 +0200 Subject: [PATCH 1090/1217] fix versionsuffix in Platanus easyconfig --- easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb b/easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb index c7b0660395..2fa31617c3 100644 --- a/easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb +++ b/easybuild/easyconfigs/p/Platanus/Platanus-1.2.1-linux-x86_64.eb @@ -2,6 +2,7 @@ easyblock = 'Binary' name = 'Platanus' version = '1.2.1' +versionsuffix = '-linux-x86_64' homepage = 'http://platanus.bio.titech.ac.jp/' description = """PLATform for Assembling NUcleotide Sequences""" -- GitLab From af2f8f3d2b1c2be50df9504f87821caff900c746 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 2 Dec 2014 12:33:57 +0100 Subject: [PATCH 1091/1217] Added Boost for ictce-7.1.2 --- .../Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb | 28 +++++++++++++++++++ 1 file changed, 28 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb new file mode 100644 index 0000000000..d29dcc1cda --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb @@ -0,0 +1,28 @@ +name = 'Boost' +version = '1.55.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +patches = ['intellinuxjam_fPIC.patch', 'boost-impi5.patch'] + +pythonversion = '2.7.8' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +osdependencies = [('zlib-devel','zlib1g-dev')] + +moduleclass = 'devel' -- GitLab From ff98ab8d207b04305ac22c6d72da668fbe523b1b Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 2 Dec 2014 12:34:59 +0100 Subject: [PATCH 1092/1217] Added GROMACS 5.0.2 --- .../g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb | 42 +++++++++++++++++++ 1 file changed, 42 insertions(+) create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb new file mode 100644 index 0000000000..5e23be1026 --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb @@ -0,0 +1,42 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# George Tsouloupas , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html +## +name = 'GROMACS' +version = '5.0.2' +versionsuffix = '-mt' + +homepage = 'http://www.gromacs.org' +description = """GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" + +toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchainopts = {'openmp': True, 'usempi': False} + +source_urls = [ + 'ftp://ftp.gromacs.org/pub/gromacs/', + 'http://gerrit.gromacs.org/download/', +] + +sources = [ + SOURCELOWER_TAR_GZ, +# seems to have disappeared? +# 'regressiontests-5.0.2.tar.gz', +] + +builddependencies = [ + ('CMake', '2.8.12'), + ('libxml2', '2.9.1') +] + +dependencies = [('Boost', '1.55.0', '-Python-2.7.8')] + +moduleclass = 'bio' -- GitLab From 516a5a56a437d3ac1344c99558666f8778de53e5 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Tue, 2 Dec 2014 13:50:39 +0100 Subject: [PATCH 1093/1217] Added forgotten Boost patch --- .../easyconfigs/b/Boost/boost-impi5.patch | 37 +++++++++++++++++++ 1 file changed, 37 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/boost-impi5.patch diff --git a/easybuild/easyconfigs/b/Boost/boost-impi5.patch b/easybuild/easyconfigs/b/Boost/boost-impi5.patch new file mode 100644 index 0000000000..635da12964 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/boost-impi5.patch @@ -0,0 +1,37 @@ +diff -ur boost_1_55_0.orig/tools/build/v2/tools/mpi.jam boost_1_55_0/tools/build/v2/tools/mpi.jam +--- boost_1_55_0.orig/tools/build/v2/tools/mpi.jam 2012-04-26 23:32:41.000000000 +0200 ++++ boost_1_55_0/tools/build/v2/tools/mpi.jam 2014-09-03 13:45:45.000000000 +0200 +@@ -301,6 +301,16 @@ + } + # OpenMPI and newer versions of LAM-MPI have -showme:compile and + # -showme:link. ++ # Look for MPICH ++ else if [ safe-shell-command "$(command) -show" ] ++ { ++ if $(.debug-configuration) ++ { ++ ECHO "Found MPICH wrapper compiler: $(command)" ; ++ } ++ compile_flags = [ SHELL "$(command) -compile_info" ] ; ++ link_flags = [ SHELL "$(command) -link_info" ] ; ++ } + else if [ safe-shell-command "$(command) -showme:compile" ] && + [ safe-shell-command "$(command) -showme:link" ] + { +@@ -327,16 +337,6 @@ + + result = [ SHELL "$(command) -showme" ] ; + } +- # Look for MPICH +- else if [ safe-shell-command "$(command) -show" ] +- { +- if $(.debug-configuration) +- { +- ECHO "Found MPICH wrapper compiler: $(command)" ; +- } +- compile_flags = [ SHELL "$(command) -compile_info" ] ; +- link_flags = [ SHELL "$(command) -link_info" ] ; +- } + # Sun HPC and Ibm POE + else if [ SHELL "$(command) -v 2>/dev/null" ] + { -- GitLab From 1d203c06dc40e56f65458d55c8d102e1d499b5c3 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 12 May 2015 21:57:32 +0200 Subject: [PATCH 1094/1217] drop non-existing source URL, remove uncommented source tarball for regressiontests --- .../g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb | 12 ++---------- 1 file changed, 2 insertions(+), 10 deletions(-) diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb index 5e23be1026..b6b649c1ec 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.2-ictce-7.1.2-mt.eb @@ -21,16 +21,8 @@ description = """GROMACS is a versatile package to perform molecular dynamics, toolchain = {'name': 'ictce', 'version': '7.1.2'} toolchainopts = {'openmp': True, 'usempi': False} -source_urls = [ - 'ftp://ftp.gromacs.org/pub/gromacs/', - 'http://gerrit.gromacs.org/download/', -] - -sources = [ - SOURCELOWER_TAR_GZ, -# seems to have disappeared? -# 'regressiontests-5.0.2.tar.gz', -] +source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] +sources = [SOURCELOWER_TAR_GZ] builddependencies = [ ('CMake', '2.8.12'), -- GitLab From 58b1fc72996bff6fb05a172f2f57f8c088a78886 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 12 May 2015 19:03:53 +0200 Subject: [PATCH 1095/1217] {bio}[intel/2015a] GROMACS 5.0.4 (mt, hybrid) --- .../GROMACS-5.0.4-intel-2015a-hybrid.eb | 42 +++++++++++++++++++ .../g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb | 42 +++++++++++++++++++ 2 files changed, 84 insertions(+) create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb new file mode 100644 index 0000000000..954bb885eb --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb @@ -0,0 +1,42 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# George Tsouloupas , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html +## +name = 'GROMACS' +version = '5.0.4' +versionsuffix = '-hybrid' + +homepage = 'http://www.gromacs.org' +description = """GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'openmp': True, 'usempi': True} + +source_urls = [ + 'ftp://ftp.gromacs.org/pub/gromacs/', + 'http://gerrit.gromacs.org/download/', +] + +sources = [ + SOURCELOWER_TAR_GZ, +# seems to have disappeared? +# 'regressiontests-5.0.2.tar.gz', +] + +builddependencies = [ + ('CMake', '3.2.2'), + ('libxml2', '2.9.2') +] + +dependencies = [('Boost', '1.58.0', '-Python-2.7.9')] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb new file mode 100644 index 0000000000..ea167cc786 --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb @@ -0,0 +1,42 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# George Tsouloupas , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html +## +name = 'GROMACS' +version = '5.0.4' +versionsuffix = '-mt' + +homepage = 'http://www.gromacs.org' +description = """GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'openmp': True, 'usempi': False} + +source_urls = [ + 'ftp://ftp.gromacs.org/pub/gromacs/', + 'http://gerrit.gromacs.org/download/', +] + +sources = [ + SOURCELOWER_TAR_GZ, +# seems to have disappeared? +# 'regressiontests-5.0.2.tar.gz', +] + +builddependencies = [ + ('CMake', '3.2.2'), + ('libxml2', '2.9.2') +] + +dependencies = [('Boost', '1.58.0', '-Python-2.7.9')] + +moduleclass = 'bio' -- GitLab From b4d9eaf523881e8aef2fd1ae5c39fd9e42d6535d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 12 May 2015 19:06:56 +0200 Subject: [PATCH 1096/1217] drop non-existing source URL, remove uncommented source tarball for regressiontests --- .../g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb | 12 ++---------- .../g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb | 12 ++---------- 2 files changed, 4 insertions(+), 20 deletions(-) diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb index 954bb885eb..0914af5ffd 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-hybrid.eb @@ -21,16 +21,8 @@ description = """GROMACS is a versatile package to perform molecular dynamics, toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'openmp': True, 'usempi': True} -source_urls = [ - 'ftp://ftp.gromacs.org/pub/gromacs/', - 'http://gerrit.gromacs.org/download/', -] - -sources = [ - SOURCELOWER_TAR_GZ, -# seems to have disappeared? -# 'regressiontests-5.0.2.tar.gz', -] +source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] +sources = [SOURCELOWER_TAR_GZ] builddependencies = [ ('CMake', '3.2.2'), diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb index ea167cc786..f0da8f6053 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.0.4-intel-2015a-mt.eb @@ -21,16 +21,8 @@ description = """GROMACS is a versatile package to perform molecular dynamics, toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'openmp': True, 'usempi': False} -source_urls = [ - 'ftp://ftp.gromacs.org/pub/gromacs/', - 'http://gerrit.gromacs.org/download/', -] - -sources = [ - SOURCELOWER_TAR_GZ, -# seems to have disappeared? -# 'regressiontests-5.0.2.tar.gz', -] +source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] +sources = [SOURCELOWER_TAR_GZ] builddependencies = [ ('CMake', '3.2.2'), -- GitLab From 36704f8219b0bf683665b5f2d33eb3c0a2b28424 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 12 May 2015 22:08:13 +0200 Subject: [PATCH 1097/1217] {bio}[intel/2015a] SaguaroGW --- .../SaguaroGW-20150315-intel-2015a.eb | 31 +++++++++++++++++++ .../SaguaroGW/SaguaroGW_icpc-drop-const.patch | 15 +++++++++ 2 files changed, 46 insertions(+) create mode 100644 easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb create mode 100644 easybuild/easyconfigs/s/SaguaroGW/SaguaroGW_icpc-drop-const.patch diff --git a/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb new file mode 100644 index 0000000000..e922e754a3 --- /dev/null +++ b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb @@ -0,0 +1,31 @@ +easyblock = 'MakeCp' + +name = 'SaguaroGW' +version = '20150315' + +homepage = 'http://sourceforge.net/projects/saguarogw/' +description = """Saguaro Genome-Wide is a program to detect signatures of selection within populations, strains, + or species. It takes SNPs or nucleotides as input, and creates statistical local phylogenies for each region in +the genome.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'openmp': True} + +source_urls = ['http://sourceforge.net/code-snapshots/svn/s/sa/saguarogw/code/'] +# SVN revision r29 +sources = ['%(namelower)s-code-29.zip'] + +patches = ['SaguaroGW_icpc-drop-const.patch'] + +buildopts = 'CPLUSPLUS="$CXX" CC="$CC" OPEN_MP=yes' + +files_to_copy = [(['checkLock', 'CactiCorrelate', 'ChromoPaintCacti', 'ClusterCacti', 'Fasta2HMMFeature', + 'Genotype2HMMFeature', 'FilterCacti', 'HMMClassify', 'HMMTrain', 'HeatMaps', 'LocalTrees', + 'Maf2HMMFeature', 'PullFromFasta', 'Saguaro', 'Saguaro2Phylip', 'VCF2HMMFeature'], 'bin')] + +sanity_check_paths = { + 'files': [], + 'dirs': ['bin'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW_icpc-drop-const.patch b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW_icpc-drop-const.patch new file mode 100644 index 0000000000..193b028341 --- /dev/null +++ b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW_icpc-drop-const.patch @@ -0,0 +1,15 @@ +fix issue with Intel compilers: 'the object has cv-qualifiers that are not compatible with the member function' +author: Kenneth Hoste (Ghent University) +--- /tmp/vsc40023/easybuild_build/SaguaroGW/20150315/intel-2015a/saguarogw-code-29/base/CommandLineParser.h.orig 2012-05-16 15:40:12.000000000 +0200 ++++ /tmp/vsc40023/easybuild_build/SaguaroGW/20150315/intel-2015a/saguarogw-code-29/base/CommandLineParser.h 2015-05-12 21:54:40.830166431 +0200 +@@ -39,8 +39,8 @@ + string GetName() { return mName; } + string GetDescription() { return mDesc; } + +-friend bool operator< (const commandArg &lhs, +- const commandArg &rhs) ++friend bool operator< (commandArg &lhs, ++ commandArg &rhs) + { + if ( lhs.GetName() < rhs.GetName() ) + return true; -- GitLab From b6510084eabdbc338561400131cebb659f561810 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 12 May 2015 22:09:26 +0200 Subject: [PATCH 1098/1217] add MD5sum for SaguaroGW source tarball --- .../easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb index e922e754a3..994bf42a7a 100644 --- a/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb @@ -14,6 +14,7 @@ toolchainopts = {'openmp': True} source_urls = ['http://sourceforge.net/code-snapshots/svn/s/sa/saguarogw/code/'] # SVN revision r29 sources = ['%(namelower)s-code-29.zip'] +checksums = ['d8549fa4c8b69f5bcb50742c41f4fd4e'] patches = ['SaguaroGW_icpc-drop-const.patch'] -- GitLab From 76089b1bea669044438b59ccc2670e6e4128e8c5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 13 May 2015 09:51:36 +0200 Subject: [PATCH 1099/1217] drop source_urls that are not guaranteed to work --- .../easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb index 994bf42a7a..897d3c2fd1 100644 --- a/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb @@ -11,8 +11,7 @@ the genome.""" toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'openmp': True} -source_urls = ['http://sourceforge.net/code-snapshots/svn/s/sa/saguarogw/code/'] -# SVN revision r29 +# SVN revision r29, download via http://sourceforge.net/p/saguarogw/code/29/tree/ ('Download Snapshot' link) sources = ['%(namelower)s-code-29.zip'] checksums = ['d8549fa4c8b69f5bcb50742c41f4fd4e'] -- GitLab From 86dfb7262445cf3398eda3751c7b5d65904d281a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 13 May 2015 14:07:27 +0200 Subject: [PATCH 1100/1217] remove checksum, tarball is generated on the fly and checksum changes --- .../easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb index 897d3c2fd1..6edbc50c07 100644 --- a/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SaguaroGW/SaguaroGW-20150315-intel-2015a.eb @@ -13,7 +13,6 @@ toolchainopts = {'openmp': True} # SVN revision r29, download via http://sourceforge.net/p/saguarogw/code/29/tree/ ('Download Snapshot' link) sources = ['%(namelower)s-code-29.zip'] -checksums = ['d8549fa4c8b69f5bcb50742c41f4fd4e'] patches = ['SaguaroGW_icpc-drop-const.patch'] -- GitLab From 8e6841ad5556e8c355ed664c1ff66184e5a71414 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 13 May 2015 14:41:14 +0200 Subject: [PATCH 1101/1217] {system}[intel/2015a] OpenSSL 1.0.1m --- .../o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb | 24 ++ .../OpenSSL/OpenSSL-1.0.1m_fix-parallel.patch | 343 ++++++++++++++++++ .../o/OpenSSL/OpenSSL-1.0.1m_icc-fixes.patch | 116 ++++++ 3 files changed, 483 insertions(+) create mode 100644 easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb create mode 100644 easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m_fix-parallel.patch create mode 100644 easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m_icc-fixes.patch diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb new file mode 100644 index 0000000000..7665ce0775 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb @@ -0,0 +1,24 @@ +name = 'OpenSSL' +version = '1.0.1m' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +patches = [ + 'OpenSSL-%(version)s_icc-fixes.patch', + 'OpenSSL-%(version)s-fix_parallel_build-1.patch', +] + +dependencies = [('zlib', '1.2.8')] + +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m_fix-parallel.patch b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m_fix-parallel.patch new file mode 100644 index 0000000000..e30b04902b --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m_fix-parallel.patch @@ -0,0 +1,343 @@ +Fixes build with make -jx, where x is greater than 1 +based on patch for 1.0.1e by Armin K. +diff -ru openssl-1.0.1m.orig/crypto/Makefile openssl-1.0.1m/crypto/Makefile +--- openssl-1.0.1m.orig/crypto/Makefile 2015-03-19 14:38:24.000000000 +0100 ++++ openssl-1.0.1m/crypto/Makefile 2015-03-31 12:14:56.071786835 +0200 +@@ -85,11 +85,11 @@ + @if [ -z "$(THIS)" ]; then $(MAKE) -f $(TOP)/Makefile reflect THIS=$@; fi + + subdirs: +- @target=all; $(RECURSIVE_MAKE) ++ +@target=all; $(RECURSIVE_MAKE) + + files: + $(PERL) $(TOP)/util/files.pl Makefile >> $(TOP)/MINFO +- @target=files; $(RECURSIVE_MAKE) ++ +@target=files; $(RECURSIVE_MAKE) + + links: + @$(PERL) $(TOP)/util/mklink.pl ../include/openssl $(EXHEADER) +@@ -100,7 +100,7 @@ + # lib: $(LIB): are splitted to avoid end-less loop + lib: $(LIB) + @touch lib +-$(LIB): $(LIBOBJ) ++$(LIB): $(LIBOBJ) | subdirs + $(AR) $(LIB) $(LIBOBJ) + [ -z "$(FIPSLIBDIR)" ] || $(AR) $(LIB) $(FIPSLIBDIR)fipscanister.o + $(RANLIB) $(LIB) || echo Never mind. +@@ -111,7 +111,7 @@ + fi + + libs: +- @target=lib; $(RECURSIVE_MAKE) ++ +@target=lib; $(RECURSIVE_MAKE) + + install: + @[ -n "$(INSTALLTOP)" ] # should be set by top Makefile... +@@ -120,7 +120,7 @@ + (cp $$i $(INSTALL_PREFIX)$(INSTALLTOP)/include/openssl/$$i; \ + chmod 644 $(INSTALL_PREFIX)$(INSTALLTOP)/include/openssl/$$i ); \ + done; +- @target=install; $(RECURSIVE_MAKE) ++ +@target=install; $(RECURSIVE_MAKE) + + lint: + @target=lint; $(RECURSIVE_MAKE) +diff -ru openssl-1.0.1m.orig/engines/Makefile openssl-1.0.1m/engines/Makefile +--- openssl-1.0.1m.orig/engines/Makefile 2015-03-19 14:38:35.000000000 +0100 ++++ openssl-1.0.1m/engines/Makefile 2015-03-31 12:14:56.071786835 +0200 +@@ -72,7 +72,7 @@ + + all: lib subdirs + +-lib: $(LIBOBJ) ++lib: $(LIBOBJ) | subdirs + @if [ -n "$(SHARED_LIBS)" ]; then \ + set -e; \ + for l in $(LIBNAMES); do \ +@@ -89,7 +89,7 @@ + + subdirs: + echo $(EDIRS) +- @target=all; $(RECURSIVE_MAKE) ++ +@target=all; $(RECURSIVE_MAKE) + + files: + $(PERL) $(TOP)/util/files.pl Makefile >> $(TOP)/MINFO +@@ -128,7 +128,7 @@ + mv -f $(INSTALL_PREFIX)$(INSTALLTOP)/$(LIBDIR)/engines/$$pfx$$l$$sfx.new $(INSTALL_PREFIX)$(INSTALLTOP)/$(LIBDIR)/engines/$$pfx$$l$$sfx ); \ + done; \ + fi +- @target=install; $(RECURSIVE_MAKE) ++ +@target=install; $(RECURSIVE_MAKE) + + tags: + ctags $(SRC) +diff -ru openssl-1.0.1m.orig/Makefile.org openssl-1.0.1m/Makefile.org +--- openssl-1.0.1m.orig/Makefile.org 2015-03-19 14:37:10.000000000 +0100 ++++ openssl-1.0.1m/Makefile.org 2015-03-31 12:14:56.071786835 +0200 +@@ -273,17 +273,17 @@ + build_libs: build_crypto build_ssl build_engines + + build_crypto: +- @dir=crypto; target=all; $(BUILD_ONE_CMD) +-build_ssl: +- @dir=ssl; target=all; $(BUILD_ONE_CMD) +-build_engines: +- @dir=engines; target=all; $(BUILD_ONE_CMD) +-build_apps: +- @dir=apps; target=all; $(BUILD_ONE_CMD) +-build_tests: +- @dir=test; target=all; $(BUILD_ONE_CMD) +-build_tools: +- @dir=tools; target=all; $(BUILD_ONE_CMD) ++ +@dir=crypto; target=all; $(BUILD_ONE_CMD) ++build_ssl: build_crypto ++ +@dir=ssl; target=all; $(BUILD_ONE_CMD) ++build_engines: build_crypto ++ +@dir=engines; target=all; $(BUILD_ONE_CMD) ++build_apps: build_libs ++ +@dir=apps; target=all; $(BUILD_ONE_CMD) ++build_tests: build_libs ++ +@dir=test; target=all; $(BUILD_ONE_CMD) ++build_tools: build_libs ++ +@dir=tools; target=all; $(BUILD_ONE_CMD) + + all_testapps: build_libs build_testapps + build_testapps: +@@ -538,9 +538,9 @@ + dist_pem_h: + (cd crypto/pem; $(MAKE) -e $(BUILDENV) pem.h; $(MAKE) clean) + +-install: all install_docs install_sw ++install: install_docs install_sw + +-install_sw: ++install_dirs: + @$(PERL) $(TOP)/util/mkdir-p.pl $(INSTALL_PREFIX)$(INSTALLTOP)/bin \ + $(INSTALL_PREFIX)$(INSTALLTOP)/$(LIBDIR) \ + $(INSTALL_PREFIX)$(INSTALLTOP)/$(LIBDIR)/engines \ +@@ -549,12 +549,19 @@ + $(INSTALL_PREFIX)$(OPENSSLDIR)/misc \ + $(INSTALL_PREFIX)$(OPENSSLDIR)/certs \ + $(INSTALL_PREFIX)$(OPENSSLDIR)/private ++ @$(PERL) $(TOP)/util/mkdir-p.pl \ ++ $(INSTALL_PREFIX)$(MANDIR)/man1 \ ++ $(INSTALL_PREFIX)$(MANDIR)/man3 \ ++ $(INSTALL_PREFIX)$(MANDIR)/man5 \ ++ $(INSTALL_PREFIX)$(MANDIR)/man7 ++ ++install_sw: install_dirs + @set -e; headerlist="$(EXHEADER)"; for i in $$headerlist;\ + do \ + (cp $$i $(INSTALL_PREFIX)$(INSTALLTOP)/include/openssl/$$i; \ + chmod 644 $(INSTALL_PREFIX)$(INSTALLTOP)/include/openssl/$$i ); \ + done; +- @set -e; target=install; $(RECURSIVE_BUILD_CMD) ++ +@set -e; target=install; $(RECURSIVE_BUILD_CMD) + @set -e; liblist="$(LIBS)"; for i in $$liblist ;\ + do \ + if [ -f "$$i" ]; then \ +@@ -634,12 +641,7 @@ + done; \ + done + +-install_docs: +- @$(PERL) $(TOP)/util/mkdir-p.pl \ +- $(INSTALL_PREFIX)$(MANDIR)/man1 \ +- $(INSTALL_PREFIX)$(MANDIR)/man3 \ +- $(INSTALL_PREFIX)$(MANDIR)/man5 \ +- $(INSTALL_PREFIX)$(MANDIR)/man7 ++install_docs: install_dirs + @pod2man="`cd ./util; ./pod2mantest $(PERL)`"; \ + here="`pwd`"; \ + filecase=; \ +diff -ru openssl-1.0.1m.orig/Makefile.shared openssl-1.0.1m/Makefile.shared +--- openssl-1.0.1m.orig/Makefile.shared 2015-01-20 13:33:36.000000000 +0100 ++++ openssl-1.0.1m/Makefile.shared 2015-03-31 12:14:56.071786835 +0200 +@@ -105,6 +105,7 @@ + SHAREDFLAGS="$${SHAREDFLAGS:-$(CFLAGS) $(SHARED_LDFLAGS)}"; \ + LIBPATH=`for x in $$LIBDEPS; do echo $$x; done | sed -e 's/^ *-L//;t' -e d | uniq`; \ + LIBPATH=`echo $$LIBPATH | sed -e 's/ /:/g'`; \ ++ [ -e $$SHLIB$$SHLIB_SOVER$$SHLIB_SUFFIX ] && exit 0; \ + LD_LIBRARY_PATH=$$LIBPATH:$$LD_LIBRARY_PATH \ + $${SHAREDCMD} $${SHAREDFLAGS} \ + -o $$SHLIB$$SHLIB_SOVER$$SHLIB_SUFFIX \ +@@ -122,6 +123,7 @@ + done; \ + fi; \ + if [ -n "$$SHLIB_SOVER" ]; then \ ++ [ -e "$$SHLIB$$SHLIB_SUFFIX" ] || \ + ( $(SET_X); rm -f $$SHLIB$$SHLIB_SUFFIX; \ + ln -s $$prev $$SHLIB$$SHLIB_SUFFIX ); \ + fi; \ +diff -ru openssl-1.0.1m.orig/test/Makefile openssl-1.0.1m/test/Makefile +--- openssl-1.0.1m.orig/test/Makefile 2015-03-19 14:38:37.000000000 +0100 ++++ openssl-1.0.1m/test/Makefile 2015-03-31 12:16:53.684158416 +0200 +@@ -130,7 +130,7 @@ + tags: + ctags $(SRC) + +-tests: exe apps $(TESTS) ++tests: exe $(TESTS) + + apps: + @(cd ..; $(MAKE) DIRS=apps all) +@@ -388,118 +388,118 @@ + link_app.$${shlib_target} + + $(RSATEST)$(EXE_EXT): $(RSATEST).o $(DLIBCRYPTO) +- @target=$(RSATEST); $(BUILD_CMD) ++ +@target=$(RSATEST); $(BUILD_CMD) + + $(BNTEST)$(EXE_EXT): $(BNTEST).o $(DLIBCRYPTO) +- @target=$(BNTEST); $(BUILD_CMD) ++ +@target=$(BNTEST); $(BUILD_CMD) + + $(ECTEST)$(EXE_EXT): $(ECTEST).o $(DLIBCRYPTO) +- @target=$(ECTEST); $(BUILD_CMD) ++ +@target=$(ECTEST); $(BUILD_CMD) + + $(EXPTEST)$(EXE_EXT): $(EXPTEST).o $(DLIBCRYPTO) +- @target=$(EXPTEST); $(BUILD_CMD) ++ +@target=$(EXPTEST); $(BUILD_CMD) + + $(IDEATEST)$(EXE_EXT): $(IDEATEST).o $(DLIBCRYPTO) +- @target=$(IDEATEST); $(BUILD_CMD) ++ +@target=$(IDEATEST); $(BUILD_CMD) + + $(MD2TEST)$(EXE_EXT): $(MD2TEST).o $(DLIBCRYPTO) +- @target=$(MD2TEST); $(BUILD_CMD) ++ +@target=$(MD2TEST); $(BUILD_CMD) + + $(SHATEST)$(EXE_EXT): $(SHATEST).o $(DLIBCRYPTO) +- @target=$(SHATEST); $(BUILD_CMD) ++ +@target=$(SHATEST); $(BUILD_CMD) + + $(SHA1TEST)$(EXE_EXT): $(SHA1TEST).o $(DLIBCRYPTO) +- @target=$(SHA1TEST); $(BUILD_CMD) ++ +@target=$(SHA1TEST); $(BUILD_CMD) + + $(SHA256TEST)$(EXE_EXT): $(SHA256TEST).o $(DLIBCRYPTO) +- @target=$(SHA256TEST); $(BUILD_CMD) ++ +@target=$(SHA256TEST); $(BUILD_CMD) + + $(SHA512TEST)$(EXE_EXT): $(SHA512TEST).o $(DLIBCRYPTO) +- @target=$(SHA512TEST); $(BUILD_CMD) ++ +@target=$(SHA512TEST); $(BUILD_CMD) + + $(RMDTEST)$(EXE_EXT): $(RMDTEST).o $(DLIBCRYPTO) +- @target=$(RMDTEST); $(BUILD_CMD) ++ +@target=$(RMDTEST); $(BUILD_CMD) + + $(MDC2TEST)$(EXE_EXT): $(MDC2TEST).o $(DLIBCRYPTO) +- @target=$(MDC2TEST); $(BUILD_CMD) ++ +@target=$(MDC2TEST); $(BUILD_CMD) + + $(MD4TEST)$(EXE_EXT): $(MD4TEST).o $(DLIBCRYPTO) +- @target=$(MD4TEST); $(BUILD_CMD) ++ +@target=$(MD4TEST); $(BUILD_CMD) + + $(MD5TEST)$(EXE_EXT): $(MD5TEST).o $(DLIBCRYPTO) +- @target=$(MD5TEST); $(BUILD_CMD) ++ +@target=$(MD5TEST); $(BUILD_CMD) + + $(HMACTEST)$(EXE_EXT): $(HMACTEST).o $(DLIBCRYPTO) +- @target=$(HMACTEST); $(BUILD_CMD) ++ +@target=$(HMACTEST); $(BUILD_CMD) + + $(WPTEST)$(EXE_EXT): $(WPTEST).o $(DLIBCRYPTO) +- @target=$(WPTEST); $(BUILD_CMD) ++ +@target=$(WPTEST); $(BUILD_CMD) + + $(RC2TEST)$(EXE_EXT): $(RC2TEST).o $(DLIBCRYPTO) +- @target=$(RC2TEST); $(BUILD_CMD) ++ +@target=$(RC2TEST); $(BUILD_CMD) + + $(BFTEST)$(EXE_EXT): $(BFTEST).o $(DLIBCRYPTO) +- @target=$(BFTEST); $(BUILD_CMD) ++ +@target=$(BFTEST); $(BUILD_CMD) + + $(CASTTEST)$(EXE_EXT): $(CASTTEST).o $(DLIBCRYPTO) +- @target=$(CASTTEST); $(BUILD_CMD) ++ +@target=$(CASTTEST); $(BUILD_CMD) + + $(RC4TEST)$(EXE_EXT): $(RC4TEST).o $(DLIBCRYPTO) +- @target=$(RC4TEST); $(BUILD_CMD) ++ +@target=$(RC4TEST); $(BUILD_CMD) + + $(RC5TEST)$(EXE_EXT): $(RC5TEST).o $(DLIBCRYPTO) +- @target=$(RC5TEST); $(BUILD_CMD) ++ +@target=$(RC5TEST); $(BUILD_CMD) + + $(DESTEST)$(EXE_EXT): $(DESTEST).o $(DLIBCRYPTO) +- @target=$(DESTEST); $(BUILD_CMD) ++ +@target=$(DESTEST); $(BUILD_CMD) + + $(RANDTEST)$(EXE_EXT): $(RANDTEST).o $(DLIBCRYPTO) +- @target=$(RANDTEST); $(BUILD_CMD) ++ +@target=$(RANDTEST); $(BUILD_CMD) + + $(DHTEST)$(EXE_EXT): $(DHTEST).o $(DLIBCRYPTO) +- @target=$(DHTEST); $(BUILD_CMD) ++ +@target=$(DHTEST); $(BUILD_CMD) + + $(DSATEST)$(EXE_EXT): $(DSATEST).o $(DLIBCRYPTO) +- @target=$(DSATEST); $(BUILD_CMD) ++ +@target=$(DSATEST); $(BUILD_CMD) + + $(METHTEST)$(EXE_EXT): $(METHTEST).o $(DLIBCRYPTO) +- @target=$(METHTEST); $(BUILD_CMD) ++ +@target=$(METHTEST); $(BUILD_CMD) + + $(SSLTEST)$(EXE_EXT): $(SSLTEST).o $(DLIBSSL) $(DLIBCRYPTO) +- @target=$(SSLTEST); $(FIPS_BUILD_CMD) ++ +@target=$(SSLTEST); $(FIPS_BUILD_CMD) + + $(ENGINETEST)$(EXE_EXT): $(ENGINETEST).o $(DLIBCRYPTO) +- @target=$(ENGINETEST); $(BUILD_CMD) ++ +@target=$(ENGINETEST); $(BUILD_CMD) + + $(EVPTEST)$(EXE_EXT): $(EVPTEST).o $(DLIBCRYPTO) +- @target=$(EVPTEST); $(BUILD_CMD) ++ +@target=$(EVPTEST); $(BUILD_CMD) + + $(EVPEXTRATEST)$(EXE_EXT): $(EVPEXTRATEST).o $(DLIBCRYPTO) +- @target=$(EVPEXTRATEST); $(BUILD_CMD) ++ +@target=$(EVPEXTRATEST); $(BUILD_CMD) + + $(ECDSATEST)$(EXE_EXT): $(ECDSATEST).o $(DLIBCRYPTO) +- @target=$(ECDSATEST); $(BUILD_CMD) ++ +@target=$(ECDSATEST); $(BUILD_CMD) + + $(ECDHTEST)$(EXE_EXT): $(ECDHTEST).o $(DLIBCRYPTO) +- @target=$(ECDHTEST); $(BUILD_CMD) ++ +@target=$(ECDHTEST); $(BUILD_CMD) + + $(IGETEST)$(EXE_EXT): $(IGETEST).o $(DLIBCRYPTO) +- @target=$(IGETEST); $(BUILD_CMD) ++ +@target=$(IGETEST); $(BUILD_CMD) + + $(JPAKETEST)$(EXE_EXT): $(JPAKETEST).o $(DLIBCRYPTO) +- @target=$(JPAKETEST); $(BUILD_CMD) ++ +@target=$(JPAKETEST); $(BUILD_CMD) + + $(ASN1TEST)$(EXE_EXT): $(ASN1TEST).o $(DLIBCRYPTO) +- @target=$(ASN1TEST); $(BUILD_CMD) ++ +@target=$(ASN1TEST); $(BUILD_CMD) + + $(SRPTEST)$(EXE_EXT): $(SRPTEST).o $(DLIBCRYPTO) +- @target=$(SRPTEST); $(BUILD_CMD) ++ +@target=$(SRPTEST); $(BUILD_CMD) + + $(HEARTBEATTEST)$(EXE_EXT): $(HEARTBEATTEST).o $(DLIBCRYPTO) +- @target=$(HEARTBEATTEST); $(BUILD_CMD_STATIC) ++ +@target=$(HEARTBEATTEST); $(BUILD_CMD_STATIC) + + $(CONSTTIMETEST)$(EXE_EXT): $(CONSTTIMETEST).o +- @target=$(CONSTTIMETEST) $(BUILD_CMD) ++ +@target=$(CONSTTIMETEST) $(BUILD_CMD) + + #$(AESTEST).o: $(AESTEST).c + # $(CC) -c $(CFLAGS) -DINTERMEDIATE_VALUE_KAT -DTRACE_KAT_MCT $(AESTEST).c diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m_icc-fixes.patch b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m_icc-fixes.patch new file mode 100644 index 0000000000..16ab3306c7 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m_icc-fixes.patch @@ -0,0 +1,116 @@ +based on http://openssl.6102.n7.nabble.com/Compiling-OpenSSL-with-icc-td42304.html (http://cvs.openssl.org/chngview?cn=23036) +diff -ru openssl-1.0.1m.orig/Configure openssl-1.0.1m/Configure +--- openssl-1.0.1m.orig/Configure 2015-03-19 14:37:10.000000000 +0100 ++++ openssl-1.0.1m/Configure 2015-03-31 12:50:44.965133568 +0200 +@@ -351,7 +351,7 @@ + # If you compiler does not, do complement config command line with one! + "linux-armv4", "gcc:-O3 -Wall::-D_REENTRANT::-ldl:BN_LLONG RC4_CHAR RC4_CHUNK DES_INT DES_UNROLL BF_PTR:${armv4_asm}:dlfcn:linux-shared:-fPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR)", + #### IA-32 targets... +-"linux-ia32-icc", "icc:-DL_ENDIAN -O2 -no_cpprt::-D_REENTRANT::-ldl:BN_LLONG ${x86_gcc_des} ${x86_gcc_opts}:${x86_elf_asm}:dlfcn:linux-shared:-KPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR)", ++"linux-ia32-icc", "icc:-DL_ENDIAN -O2::-D_REENTRANT::-ldl -no_cpprt:BN_LLONG ${x86_gcc_des} ${x86_gcc_opts}:${x86_elf_asm}:dlfcn:linux-shared:-KPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR)", + "linux-elf", "gcc:-DL_ENDIAN -O3 -fomit-frame-pointer -Wall::-D_REENTRANT::-ldl:BN_LLONG ${x86_gcc_des} ${x86_gcc_opts}:${x86_elf_asm}:dlfcn:linux-shared:-fPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR)", + "linux-aout", "gcc:-DL_ENDIAN -O3 -fomit-frame-pointer -march=i486 -Wall::(unknown):::BN_LLONG ${x86_gcc_des} ${x86_gcc_opts}:${x86_asm}:a.out", + #### +@@ -359,8 +359,9 @@ + "linux-ppc64", "gcc:-m64 -DB_ENDIAN -O3 -Wall::-D_REENTRANT::-ldl:SIXTY_FOUR_BIT_LONG RC4_CHAR RC4_CHUNK DES_RISC1 DES_UNROLL:${ppc64_asm}:linux64:dlfcn:linux-shared:-fPIC:-m64:.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR):::64", + "linux-ia64", "gcc:-DL_ENDIAN -O3 -Wall::-D_REENTRANT::-ldl:SIXTY_FOUR_BIT_LONG RC4_CHUNK DES_UNROLL DES_INT:${ia64_asm}:dlfcn:linux-shared:-fPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR)", + "linux-ia64-ecc","ecc:-DL_ENDIAN -O2 -Wall -no_cpprt::-D_REENTRANT::-ldl:SIXTY_FOUR_BIT_LONG RC4_CHUNK DES_INT:${ia64_asm}:dlfcn:linux-shared:-fPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR)", +-"linux-ia64-icc","icc:-DL_ENDIAN -O2 -Wall -no_cpprt::-D_REENTRANT::-ldl:SIXTY_FOUR_BIT_LONG RC4_CHUNK DES_RISC1 DES_INT:${ia64_asm}:dlfcn:linux-shared:-fPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR)", ++"linux-ia64-icc","icc:-DL_ENDIAN -O2 -Wall::-D_REENTRANT::-ldl -no_cpprt:SIXTY_FOUR_BIT_LONG RC4_CHUNK DES_RISC1 DES_INT:${ia64_asm}:dlfcn:linux-shared:-fPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR)", + "linux-x86_64", "gcc:-m64 -DL_ENDIAN -O3 -Wall::-D_REENTRANT::-ldl:SIXTY_FOUR_BIT_LONG RC4_CHUNK DES_INT DES_UNROLL:${x86_64_asm}:elf:dlfcn:linux-shared:-fPIC:-m64:.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR):::64", ++"linux-x86_64-icc", "icc:-DL_ENDIAN -DTERMIO -O2::-D_REENTRANT::-ldl -no_cpprt:SIXTY_FOUR_BIT_LONG RC4_CHUNK DES_INT DES_UNROLL:${x86_64_asm}:elf:dlfcn:linux-shared:-fPIC::.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR):::64", + "linux64-s390x", "gcc:-m64 -DB_ENDIAN -O3 -Wall::-D_REENTRANT::-ldl:SIXTY_FOUR_BIT_LONG RC4_CHAR RC4_CHUNK DES_INT DES_UNROLL:${s390x_asm}:64:dlfcn:linux-shared:-fPIC:-m64:.so.\$(SHLIB_MAJOR).\$(SHLIB_MINOR):::64", + #### So called "highgprs" target for z/Architecture CPUs + # "Highgprs" is kernel feature first implemented in Linux 2.6.32, see +@@ -1416,6 +1417,7 @@ + } + if ($iccver>=8) + { ++ $cflags=~s/\-KPIC/-fPIC/; + # Eliminate unnecessary dependency from libirc.a. This is + # essential for shared library support, as otherwise + # apps/openssl can end up in endless loop upon startup... +@@ -1423,13 +1425,18 @@ + } + if ($iccver>=9) + { +- $cflags.=" -i-static"; +- $cflags=~s/\-no_cpprt/-no-cpprt/; ++ $lflags.=" -i-static"; ++ $lflags=~s/\-no_cpprt/-no-cpprt/; + } + if ($iccver>=10) + { +- $cflags=~s/\-i\-static/-static-intel/; ++ $lflags=~s/\-i\-static/-static-intel/; + } ++ if ($iccver>=11) ++ { ++ $cflags.=" -no-intel-extensions"; # disable Cilk ++ $lflags=~s/\-no\-cpprt/-no-cxxlib/; ++ } + } + + # Unlike other OSes (like Solaris, Linux, Tru64, IRIX) BSD run-time +diff -ru openssl-1.0.1m.orig/crypto/aes/aes_x86core.c openssl-1.0.1m/crypto/aes/aes_x86core.c +--- openssl-1.0.1m.orig/crypto/aes/aes_x86core.c 2015-03-19 14:37:10.000000000 +0100 ++++ openssl-1.0.1m/crypto/aes/aes_x86core.c 2015-03-31 12:28:27.768182812 +0200 +@@ -89,8 +89,10 @@ + #endif + + #undef ROTATE +-#if defined(_MSC_VER) || defined(__ICC) ++#if defined(_MSC_VER) + # define ROTATE(a,n) _lrotl(a,n) ++#elif defined(__ICC) ++# define ROTATE(a,n) _rotl(a,n) + #elif defined(__GNUC__) && __GNUC__>=2 + # if defined(__i386) || defined(__i386__) || defined(__x86_64) || defined(__x86_64__) + # define ROTATE(a,n) ({ register unsigned int ret; \ +diff -ru openssl-1.0.1m.orig/crypto/des/des_locl.h openssl-1.0.1m/crypto/des/des_locl.h +--- openssl-1.0.1m.orig/crypto/des/des_locl.h 2015-03-19 14:37:10.000000000 +0100 ++++ openssl-1.0.1m/crypto/des/des_locl.h 2015-03-31 12:52:29.287245531 +0200 +@@ -162,8 +162,10 @@ + } \ + } + +-# if (defined(OPENSSL_SYS_WIN32) && defined(_MSC_VER)) || defined(__ICC) ++# if (defined(OPENSSL_SYS_WIN32) && defined(_MSC_VER)) + # define ROTATE(a,n) (_lrotr(a,n)) ++#elif defined(__ICC) ++#define ROTATE(a,n) (_rotr(a,n)) + # elif defined(__GNUC__) && __GNUC__>=2 && !defined(__STRICT_ANSI__) && !defined(OPENSSL_NO_ASM) && !defined(OPENSSL_NO_INLINE_ASM) && !defined(PEDANTIC) + # if defined(__i386) || defined(__i386__) || defined(__x86_64) || defined(__x86_64__) + # define ROTATE(a,n) ({ register unsigned int ret; \ +diff -ru openssl-1.0.1m.orig/crypto/md32_common.h openssl-1.0.1m/crypto/md32_common.h +--- openssl-1.0.1m.orig/crypto/md32_common.h 2015-03-19 14:37:10.000000000 +0100 ++++ openssl-1.0.1m/crypto/md32_common.h 2015-03-31 12:53:03.737932332 +0200 +@@ -142,8 +142,10 @@ + */ + #undef ROTATE + #ifndef PEDANTIC +-# if defined(_MSC_VER) || defined(__ICC) ++# if defined(_MSC_VER) + # define ROTATE(a,n) _lrotl(a,n) ++# elif defined(__ICC) ++# define ROTATE(a,n) _rotl(a,n) + # elif defined(__MWERKS__) + # if defined(__POWERPC__) + # define ROTATE(a,n) __rlwinm(a,n,0,31) +diff -ru openssl-1.0.1m.orig/crypto/rc5/rc5_locl.h openssl-1.0.1m/crypto/rc5/rc5_locl.h +--- openssl-1.0.1m.orig/crypto/rc5/rc5_locl.h 2015-03-19 14:37:10.000000000 +0100 ++++ openssl-1.0.1m/crypto/rc5/rc5_locl.h 2015-03-31 12:51:52.976509433 +0200 +@@ -146,9 +146,12 @@ + *((c)++)=(unsigned char)(((l)>> 8L)&0xff), \ + *((c)++)=(unsigned char)(((l) )&0xff)) + +-#if (defined(OPENSSL_SYS_WIN32) && defined(_MSC_VER)) || defined(__ICC) ++#if (defined(OPENSSL_SYS_WIN32) && defined(_MSC_VER)) + # define ROTATE_l32(a,n) _lrotl(a,n) + # define ROTATE_r32(a,n) _lrotr(a,n) ++#elif defined(__ICC) ++#define ROTATE_l32(a,n) _rotl(a,n) ++#define ROTATE_r32(a,n) _rotr(a,n) + #elif defined(__GNUC__) && __GNUC__>=2 && !defined(__STRICT_ANSI__) && !defined(OPENSSL_NO_ASM) && !defined(OPENSSL_NO_INLINE_ASM) && !defined(PEDANTIC) + # if defined(__i386) || defined(__i386__) || defined(__x86_64) || defined(__x86_64__) + # define ROTATE_l32(a,n) ({ register unsigned int ret; \ -- GitLab From b031cab7df4eecc84a831a406496436d757b0e68 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 13 May 2015 15:13:04 +0200 Subject: [PATCH 1102/1217] fix OpenSSL 1.0.1m patch name --- easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb index 7665ce0775..a127a7e7bb 100644 --- a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1m-intel-2015a.eb @@ -14,7 +14,7 @@ source_urls = ['http://www.openssl.org/source/'] patches = [ 'OpenSSL-%(version)s_icc-fixes.patch', - 'OpenSSL-%(version)s-fix_parallel_build-1.patch', + 'OpenSSL-%(version)s_fix-parallel.patch', ] dependencies = [('zlib', '1.2.8')] -- GitLab From 2515a635d62a5d85ec1e267dbfbf72bfed64cac4 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Wed, 13 May 2015 12:06:31 +0200 Subject: [PATCH 1103/1217] added python 3.4.1 with intel 2015a toolchain --- .../p/Python/Python-3.4.1-intel-2015a.eb | 103 ++++++++++++++++++ 1 file changed, 103 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb new file mode 100644 index 0000000000..5769376b00 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb @@ -0,0 +1,103 @@ +name = 'Python' +version = '3.4.1' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.8.1' +scipyversion = '0.14.0' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# libffi build in python is still broken, see http://bugs.python.org/issue4130 +patches = ['python-3.4_libffi-include-xmmintrin.patch'] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# order is important! +# Version updated 08/JULY/2014 +exts_list = [ + ('setuptools', '5.4.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '1.5.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.3', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-%s-mkl.patch' % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.9.1', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + # tarball has changed upstream, so make sure we get the right version by verifying the checksum + 'checksums': ['ce61468d4c1263e3005737bbed2641f0'], + }), + ('Cython', '0.20.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.7.3', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.2', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.14.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), +] + +moduleclass = 'lang' -- GitLab From ab0c00b9fdfb4ab34672f873afaadb66266a3697 Mon Sep 17 00:00:00 2001 From: Jens Timmerman Date: Tue, 12 May 2015 14:42:47 +0200 Subject: [PATCH 1104/1217] added python 3.4.3 intel 2015a --- .../p/Python/Python-3.4.3-intel-2015a.eb | 107 ++++++++++++++++++ 1 file changed, 107 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb new file mode 100644 index 0000000000..d0fad95102 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb @@ -0,0 +1,107 @@ +name = 'Python' +version = '3.4.3' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.1' +scipyversion = '0.14.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# order is important! +# package versions updated Jan 19th 2015 +exts_filter = ('PYTHONPATH="%(installdir)s:$PYTHONPATH python -c "import %(ext_name)s"', '') +exts_list = [ + ('setuptools', '11.3.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '6.0.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.4', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-1.8.0-mkl.patch', # % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('pbr', '0.10.8', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + }), + ('lockfile', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.21.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.0', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.15.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.13', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), +] -- GitLab From 7c5a920698c566bf60d7a801d602972c7c9420dd Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 13 May 2015 14:14:58 +0200 Subject: [PATCH 1105/1217] bump extension versions in Python 3.4.3 easyconfig --- .../p/Python/Python-3.4.3-intel-2015a.eb | 30 +++++++++---------- 1 file changed, 15 insertions(+), 15 deletions(-) diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb index d0fad95102..a2c2596145 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb @@ -7,8 +7,8 @@ description = "Python is a programming language that lets you work more quickly toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'pic': True, 'opt': True, 'optarch': True} -numpyversion = '1.9.1' -scipyversion = '0.14.1' +numpyversion = '1.9.2' +scipyversion = '0.15.1' source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] sources = [SOURCE_TGZ] @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's # nice to have an up to date openssl for security reasons ] @@ -29,13 +29,13 @@ osdependencies = [('openssl-devel', 'libssl-dev')] # package versions updated Jan 19th 2015 exts_filter = ('PYTHONPATH="%(installdir)s:$PYTHONPATH python -c "import %(ext_name)s"', '') exts_list = [ - ('setuptools', '11.3.1', { + ('setuptools', '15.2', { 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], }), - ('pip', '6.0.6', { + ('pip', '6.1.1', { 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], }), - ('nose', '1.3.4', { + ('nose', '1.3.6', { 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { @@ -56,32 +56,32 @@ exts_list = [ ('paycheck', '1.0.2', { 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], }), - ('argparse', '1.2.1', { + ('argparse', '1.3.0', { 'source_urls': ['http://argparse.googlecode.com/files/'], }), - ('pbr', '0.10.8', { + ('pbr', '0.11.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], }), ('lockfile', '0.10.2', { 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], }), - ('Cython', '0.21.2', { + ('Cython', '0.22', { 'source_urls': ['http://www.cython.org/release/'], }), ('six', '1.9.0', { 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], }), - ('dateutil', '2.4.0', { + ('dateutil', '2.4.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], }), - ('deap', '1.0.1', { + ('deap', '1.0.2', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], }), - ('decorator', '3.4.0', { + ('decorator', '3.4.2', { 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], }), - ('arff', '2.0.1', { + ('arff', '2.0.2', { 'source_tmpl': 'liac-%(name)s-%(version)s.zip', 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], }), @@ -89,7 +89,7 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), - ('ecdsa', '0.11', { + ('ecdsa', '0.13', { 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], }), ('paramiko', '1.15.2', { @@ -101,7 +101,7 @@ exts_list = [ ('netifaces', '0.10.4', { 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], }), - ('netaddr', '0.7.13', { + ('netaddr', '0.7.14', { 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], }), ] -- GitLab From 7e8feed77c7d66b2cbb1d6e639d06e20675752f5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 13 May 2015 14:20:45 +0200 Subject: [PATCH 1106/1217] fix argparse source URL --- easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb index a2c2596145..eca8e6a7b9 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb @@ -57,7 +57,7 @@ exts_list = [ 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.3.0', { - 'source_urls': ['http://argparse.googlecode.com/files/'], + 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], }), ('pbr', '0.11.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], -- GitLab From 709871afa62c5c125a7c6bd46b5af3781d25dbe4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 13 May 2015 14:25:24 +0200 Subject: [PATCH 1107/1217] fix deap source template --- easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb index eca8e6a7b9..9e5af7e518 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb @@ -76,6 +76,7 @@ exts_list = [ 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.2', { + 'source_tmpl': '%(name)s-%(version)s.post1.tar.gz', 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], }), ('decorator', '3.4.2', { -- GitLab From 0c3fc06d04290127ce15b3908e009778613dcc24 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 13 May 2015 16:21:04 +0200 Subject: [PATCH 1108/1217] include patch for deap extension in Python 3.4.3 easyconfig --- .../p/Python/Python-3.4.3-intel-2015a.eb | 1 + .../easyconfigs/p/Python/deap-1.0.2_no-README.patch | 13 +++++++++++++ 2 files changed, 14 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/deap-1.0.2_no-README.patch diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb index 9e5af7e518..c1fd1209b8 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb @@ -78,6 +78,7 @@ exts_list = [ ('deap', '1.0.2', { 'source_tmpl': '%(name)s-%(version)s.post1.tar.gz', 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + 'patches': ['deap-1.0.2_no-README.patch'], }), ('decorator', '3.4.2', { 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], diff --git a/easybuild/easyconfigs/p/Python/deap-1.0.2_no-README.patch b/easybuild/easyconfigs/p/Python/deap-1.0.2_no-README.patch new file mode 100644 index 0000000000..b88bba0d0c --- /dev/null +++ b/easybuild/easyconfigs/p/Python/deap-1.0.2_no-README.patch @@ -0,0 +1,13 @@ +README.md is not included in tarball, so comment out long description +author: Kenneth Hoste (Ghent University) +--- deap-1.0.2/setup.py.orig 2015-05-13 15:58:21.188127136 +0200 ++++ deap-1.0.2/setup.py 2015-05-13 15:58:30.288556411 +0200 +@@ -19,7 +19,7 @@ + setup(name='deap', + version=deap.__revision__, + description='Distributed Evolutionary Algorithms in Python', +- long_description=read_md('README.md'), ++ #long_description=read_md('README.md'), + author='deap Development Team', + author_email='deap-users@googlegroups.com', + url='https://www.github.com/deap', -- GitLab From 59a7685480a80ea6e0493b60d2a9c736a6189a1d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 14 May 2015 09:19:11 +0200 Subject: [PATCH 1109/1217] bump subversion for deap extension, drop unnecessary patch --- .../p/Python/Python-3.4.3-intel-2015a.eb | 3 +-- .../easyconfigs/p/Python/deap-1.0.2_no-README.patch | 13 ------------- 2 files changed, 1 insertion(+), 15 deletions(-) delete mode 100644 easybuild/easyconfigs/p/Python/deap-1.0.2_no-README.patch diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb index c1fd1209b8..3265a5bd15 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb @@ -76,9 +76,8 @@ exts_list = [ 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.2', { - 'source_tmpl': '%(name)s-%(version)s.post1.tar.gz', + 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], - 'patches': ['deap-1.0.2_no-README.patch'], }), ('decorator', '3.4.2', { 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], diff --git a/easybuild/easyconfigs/p/Python/deap-1.0.2_no-README.patch b/easybuild/easyconfigs/p/Python/deap-1.0.2_no-README.patch deleted file mode 100644 index b88bba0d0c..0000000000 --- a/easybuild/easyconfigs/p/Python/deap-1.0.2_no-README.patch +++ /dev/null @@ -1,13 +0,0 @@ -README.md is not included in tarball, so comment out long description -author: Kenneth Hoste (Ghent University) ---- deap-1.0.2/setup.py.orig 2015-05-13 15:58:21.188127136 +0200 -+++ deap-1.0.2/setup.py 2015-05-13 15:58:30.288556411 +0200 -@@ -19,7 +19,7 @@ - setup(name='deap', - version=deap.__revision__, - description='Distributed Evolutionary Algorithms in Python', -- long_description=read_md('README.md'), -+ #long_description=read_md('README.md'), - author='deap Development Team', - author_email='deap-users@googlegroups.com', - url='https://www.github.com/deap', -- GitLab From 04cb28e3bcf535261ee816ae0144b049ded5bb33 Mon Sep 17 00:00:00 2001 From: Balazs Hajgato Date: Mon, 4 May 2015 09:49:11 +0200 Subject: [PATCH 1110/1217] BLAST+ with foss 2015a --- .../BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb | 41 +++++++++++++++++++ 1 file changed, 41 insertions(+) create mode 100644 easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000..37178f8aa5 --- /dev/null +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb @@ -0,0 +1,41 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Luxembourg Centre for Systems Biomedicine +# Authors:: Fotis Georgatos , Kenneth Hoste (UGent) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'ConfigureMake' + +name = 'BLAST+' +version = "2.2.30" +versionsuffix = '-Python-2.7.9' + +homepage = 'http://blast.ncbi.nlm.nih.gov/' +description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm + for comparing primary biological sequence information, such as the amino-acid + sequences of different proteins or the nucleotides of DNA sequences.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = ['ncbi-blast-%(version)s+-src.tar.gz'] +source_urls = ['http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/%(version)s/'] + +patches = ['%(name)s-%(version)s_basename-fixes.patch'] + +dependencies = [('Boost', '1.57.0', versionsuffix)] + +configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' + +sanity_check_paths = { + 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], + 'dirs': [] +} + +moduleclass = 'bio' + -- GitLab From 38d140ef441956f834faef6efa12ef0cb2b843e4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 16 May 2015 10:13:15 +0200 Subject: [PATCH 1111/1217] add version 5.2.40 of Cray toolchains + HPL as test case --- .../easyconfigs/c/CrayCCE/CrayCCE-5.2.40.eb | 16 ++++++++++++++ .../easyconfigs/c/CrayGNU/CrayGNU-5.2.40.eb | 16 ++++++++++++++ .../c/CrayIntel/CrayIntel-5.2.40.eb | 16 ++++++++++++++ .../h/HPL/HPL-2.1-CrayCCE-5.2.40.eb | 22 +++++++++++++++++++ .../h/HPL/HPL-2.1-CrayGNU-5.2.40.eb | 18 +++++++++++++++ .../h/HPL/HPL-2.1-CrayIntel-5.2.40.eb | 18 +++++++++++++++ 6 files changed, 106 insertions(+) create mode 100644 easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.40.eb create mode 100644 easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.40.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.40.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.40.eb diff --git a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.40.eb b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.40.eb new file mode 100644 index 0000000000..b31f4b3a23 --- /dev/null +++ b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.40.eb @@ -0,0 +1,16 @@ +easyblock = 'Toolchain' + +name = 'CrayCCE' +version = '5.2.40' + +homepage = '(none)' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-cray module.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('PrgEnv-cray/' + version, EXTERNAL_MODULE), # also loads cray-libsci + ('fftw/3.3.4.2', EXTERNAL_MODULE), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.40.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..dbbbbbd303 --- /dev/null +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.40.eb @@ -0,0 +1,16 @@ +easyblock = 'Toolchain' + +name = 'CrayGNU' +version = '5.2.40' + +homepage = '(none)' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-gnu module.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('PrgEnv-gnu/' + version, EXTERNAL_MODULE), # also loads cray-libsci + ('fftw/3.3.4.2', EXTERNAL_MODULE), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.40.eb b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.40.eb new file mode 100644 index 0000000000..5937accfe4 --- /dev/null +++ b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.40.eb @@ -0,0 +1,16 @@ +easyblock = 'Toolchain' + +name = 'CrayIntel' +version = '5.2.40' + +homepage = '(none)' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-intel module.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + ('PrgEnv-intel/' + version, EXTERNAL_MODULE), # also loads cray-libsci + ('fftw/3.3.4.2', EXTERNAL_MODULE), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.40.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.40.eb new file mode 100644 index 0000000000..b91a1eb499 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.40.eb @@ -0,0 +1,22 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'CrayCCE', 'version': '5.2.40'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +patches = [ + # fix Make dependencies, so parallel build also works + 'HPL_parallel-make.patch', + 'HPL-2.1_LINKER-ld.patch', +] + +parallel = 1 + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..dcfcc5ca6e --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.40.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.40.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.40.eb new file mode 100644 index 0000000000..8a33b68ad9 --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.40.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'CrayIntel', 'version': '5.2.40'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' -- GitLab From d5d049057b951e9fa52840ce987377b8d4e0a441 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 7 May 2015 15:59:13 +0300 Subject: [PATCH 1112/1217] enable usempi in GROMACS Cray easyconfig, the easyblock enables MPI support on it --- .../easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb | 1 + 1 file changed, 1 insertion(+) diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb index c7618bc1f3..1aa3886405 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb @@ -19,6 +19,7 @@ description = """GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchainopts = {'usempi': True} # eg. ftp://ftp.gromacs.org/pub/gromacs/gromacs-4.6.tar.gz source_urls = [ -- GitLab From 114232dd6b90b67f9f3bb61d9a032c2b9b5e8780 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 16 May 2015 14:45:13 +0200 Subject: [PATCH 1113/1217] only use 'dynamic' toolchain option, not 'shared', in easyconfigs using Cray toolchain --- easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.1.29.eb | 2 +- easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.1.29.eb | 2 +- easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.1.29.eb | 2 +- easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.1.29.eb | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.1.29.eb index 64defc00e8..23ac2489aa 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.1.29.eb @@ -7,7 +7,7 @@ description = """The Ncurses (new curses) library is a free software emulation o function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} -toolchainopts = {'pic': True, 'shared': True, 'dynamic': True} +toolchainopts = {'pic': True, 'dynamic': True} source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.1.29.eb index 5a2850640d..dfcda740ab 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.1.29.eb @@ -7,7 +7,7 @@ homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' description = "Szip compression software, providing lossless compression of scientific data" toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} -toolchainopts = {'pic': True, 'shared': True, 'dynamic': True} +toolchainopts = {'pic': True, 'dynamic': True} source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.1.29.eb index 6245093966..b62190e55f 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.1.29.eb @@ -21,7 +21,7 @@ description = """Tcsh is an enhanced, but completely compatible version of the B mechanism, job control and a C-like syntax.""" toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} -toolchainopts = {'shared': True, 'dynamic': True} +toolchainopts = {'dynamic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [ diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.1.29.eb index 737b571621..f6714bc2c1 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.1.29.eb @@ -9,7 +9,7 @@ description = """zlib is designed to be a free, general-purpose, legally unencum computer hardware and operating system.""" toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} -toolchainopts = {'pic': True, 'shared': True} +toolchainopts = {'pic': True, 'dynamic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] -- GitLab From a87232564c6f4ac0c48a03d46ed25abc6b6c06f8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 16 May 2015 15:18:33 +0200 Subject: [PATCH 1115/1217] clean up comments --- .../easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb index aecb28f087..cfdc17ab69 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb @@ -15,11 +15,9 @@ source_urls = [ 'http://www.mmm.ucar.edu/wrf/src/', ] -# csh is used by WRF install scripts -# tcsh provided via EasyBuild may cause build to hang (in interactive configure?) -# ncurses related issue? rebuild tcsh without EB-provided ncurses? -#builddependencies = [('tcsh', '6.18.01')] +# use tcsh provided by system, using an EB-provided tcsh results in a hanging build command on some Cray systems osdependencies = ['tcsh'] +#builddependencies = [('tcsh', '6.18.01')] dependencies = [ ('JasPer', '1.900.1'), -- GitLab From 4dc228d977e87af658704efd36df9d4a30b3aa8c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 11 May 2015 22:06:49 +0200 Subject: [PATCH 1116/1217] list tcsh as build dep in WRF built with CrayGNU, rather than providing it as a build dep --- .../easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb index 3806e63de1..aecb28f087 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb @@ -16,7 +16,10 @@ source_urls = [ ] # csh is used by WRF install scripts -builddependencies = [('tcsh', '6.18.01')] +# tcsh provided via EasyBuild may cause build to hang (in interactive configure?) +# ncurses related issue? rebuild tcsh without EB-provided ncurses? +#builddependencies = [('tcsh', '6.18.01')] +osdependencies = ['tcsh'] dependencies = [ ('JasPer', '1.900.1'), -- GitLab From fca31c50d3a4efc30b2f05a208a70c2eb8dc482a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 16 May 2015 15:18:33 +0200 Subject: [PATCH 1117/1217] clean up comments --- .../easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb index aecb28f087..cfdc17ab69 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb @@ -15,11 +15,9 @@ source_urls = [ 'http://www.mmm.ucar.edu/wrf/src/', ] -# csh is used by WRF install scripts -# tcsh provided via EasyBuild may cause build to hang (in interactive configure?) -# ncurses related issue? rebuild tcsh without EB-provided ncurses? -#builddependencies = [('tcsh', '6.18.01')] +# use tcsh provided by system, using an EB-provided tcsh results in a hanging build command on some Cray systems osdependencies = ['tcsh'] +#builddependencies = [('tcsh', '6.18.01')] dependencies = [ ('JasPer', '1.900.1'), -- GitLab From ad84890dd55eb8282003990306ac64c1ad362726 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 16 May 2015 17:33:21 +0200 Subject: [PATCH 1118/1217] add easyconfigs using CrayGNU/5.2.40 toolchain --- .../b/Bison/Bison-3.0.2-CrayGNU-5.2.40.eb | 22 ++++ .../b/bzip2/bzip2-1.0.6-CrayGNU-5.2.40.eb | 15 +++ .../c/CMake/CMake-3.2.2-CrayGNU-5.2.40.eb | 23 ++++ .../c/CP2K/CP2K-2.6.0-CrayGNU-5.2.40.eb | 38 +++++++ .../f/flex/flex-2.5.39-CrayGNU-5.2.40.eb | 14 +++ .../GROMACS-4.6.7-CrayGNU-5.2.40-mpi.eb | 38 +++++++ .../j/JasPer/JasPer-1.900.1-CrayGNU-5.2.40.eb | 21 ++++ .../l/Libint/Libint-1.1.4-CrayGNU-5.2.40.eb | 24 ++++ .../libreadline-6.3-CrayGNU-5.2.40.eb | 27 +++++ .../l/libxc/libxc-2.2.1-CrayGNU-5.2.40.eb | 32 ++++++ .../m/M4/M4-1.4.17-CrayGNU-5.2.40.eb | 23 ++++ .../n/ncurses/ncurses-5.9-CrayGNU-5.2.40.eb | 22 ++++ ...numpy-1.9.2-CrayGNU-5.2.40-Python-2.7.9.eb | 26 +++++ .../Python-2.7.9-CrayGNU-5.2.40-bare.eb | 31 +++++ .../p/Python/Python-2.7.9-CrayGNU-5.2.40.eb | 107 ++++++++++++++++++ .../s/Szip/Szip-2.1-CrayGNU-5.2.40.eb | 23 ++++ ...cipy-0.15.1-CrayGNU-5.2.40-Python-2.7.9.eb | 19 ++++ .../t/tcsh/tcsh-6.18.01-CrayGNU-5.2.40.eb | 39 +++++++ .../w/WRF/WRF-3.6.1-CrayGNU-5.2.40-dmpar.eb | 41 +++++++ .../z/zlib/zlib-1.2.8-CrayGNU-5.2.40.eb | 22 ++++ 20 files changed, 607 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.40-mpi.eb create mode 100644 easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.40-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40-bare.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.40-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.40-dmpar.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.40.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..67832ccafa --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.40.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.2' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..58489cb68f --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.40.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..275dc8cada --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.40.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.2.2' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'dynamic': True} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..eea0ba5f73 --- /dev/null +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.40.eb @@ -0,0 +1,38 @@ +name = 'CP2K' +version = '2.6.0' + +homepage = 'http://www.cp2k.org/' +description = """CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular + simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different + methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and + classical pair and many-body potentials. """ + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [SOURCEFORGE_SOURCE] + +patches = [ + 'CP2K-2.6.0-ifort-compiler-bug-fix.patch', + 'CP2K-2.4.0-fix_compile_date_lastsvn.patch', +] + +dependencies = [ + ('Libint', '1.1.4'), + ('libxc', '2.2.1'), +] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.2'), +] + +# don't use parallel make, results in compilation failure +# because Fortran module files aren't created before they are needed +parallel = 1 + +# regression test reports failures +ignore_regtest_fails = True + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..470ec059e0 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.40.eb @@ -0,0 +1,14 @@ +name = 'flex' +version = '2.5.39' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.40-mpi.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.40-mpi.eb new file mode 100644 index 0000000000..239ea564c8 --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.40-mpi.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# George Tsouloupas , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html +## +name = 'GROMACS' +version = '4.6.7' +versionsuffix = '-mpi' + +homepage = 'http://www.gromacs.org' +description = """GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'usempi': True} + +# eg. ftp://ftp.gromacs.org/pub/gromacs/gromacs-4.6.tar.gz +source_urls = [ + 'ftp://ftp.gromacs.org/pub/gromacs/', # GROMACS sources + 'http://gerrit.gromacs.org/download/', # regression tests sources +] +sources = [ + SOURCELOWER_TAR_GZ, + 'regressiontests-%(version)s.tar.gz', +] + +builddependencies = [('CMake', '3.2.2')] + +runtest = False + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..cef32fd43d --- /dev/null +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.40.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'JasPer' +version = '1.900.1' + +homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' +description = """The JasPer Project is an open-source initiative to provide a free + software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_ZIP] +source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] + +sanity_check_paths = { + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..4f2df44352 --- /dev/null +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.40.eb @@ -0,0 +1,24 @@ +name = 'Libint' +version = '1.1.4' + +homepage = 'https://sourceforge.net/p/libint/' +description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body + matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'opt': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') + +configopts = "--enable-deriv --enable-r12" + +sanity_check_paths = { + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], + 'dirs':[], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..7264a9260e --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.40.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..80df7f4320 --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.40.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = '2.2.1' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'opt': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS"' + +# From the libxc mailing list +# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect +# a fully working testsuite soon (unless someone wants to volunteer to do +# it, of course ) In the meantime, unless the majority of the tests +# fail, your build should be fine. +#runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc.a'], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..d1ac7167dc --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.40.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..af63de1cff --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.40.eb @@ -0,0 +1,22 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True, 'dynamic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +configopts = [ + # default build, no custom configure options + '', + # the UTF-8 enabled version (ncursesw) + '--enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.40-Python-2.7.9.eb b/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.40-Python-2.7.9.eb new file mode 100644 index 0000000000..7d81f886bc --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.40-Python-2.7.9.eb @@ -0,0 +1,26 @@ +name = 'numpy' +version = '1.9.2' + +homepage = 'http://www.numpy.org' +description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: + a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran + code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, + NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be + defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCE_TAR_GZ] + +patches = ['numpy-1.8.0-mkl.patch'] + +python = 'Python' +pyver = '2.7.9' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40-bare.eb new file mode 100644 index 0000000000..10c6659238 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40-bare.eb @@ -0,0 +1,31 @@ +name = 'Python' +version = '2.7.9' +versionsuffix = '-bare' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True, 'opt': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# bare installation: no extensions included +exts_list = [] + +buildopts = 'LINKCC="$CC -dynamic"' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..deac7ecaca --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40.eb @@ -0,0 +1,107 @@ +name = 'Python' +version = '2.7.9' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.1' +scipyversion = '0.14.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +buildopts = 'LINKCC="$CC -dynamic"' + +# order is important! +# package versions updated Jan 19th 2015 +exts_list = [ + ('setuptools', '11.3.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '6.0.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.4', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-1.8.0-mkl.patch', # % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.21.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.0', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.15.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.13', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..d98933db4b --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.40.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True, 'dynamic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.so"] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.40-Python-2.7.9.eb b/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.40-Python-2.7.9.eb new file mode 100644 index 0000000000..adb35688b3 --- /dev/null +++ b/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.40-Python-2.7.9.eb @@ -0,0 +1,19 @@ +name = 'scipy' +version = '0.15.1' +versionsuffix = '-Python-2.7.9' + +homepage = 'http://www.scipy.org' +description = """SciPy is a collection of mathematical algorithms and convenience + functions built on the Numpy extension for Python.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True} + +source_urls = [('http://sourceforge.net/projects/scipy/files/scipy/%(version)s', 'download')] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('numpy', '1.9.2', versionsuffix), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..171465e133 --- /dev/null +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.40.eb @@ -0,0 +1,39 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit +# Authors:: Valentin Plugaru +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html +## +easyblock = 'ConfigureMake' + +name = 'tcsh' +version = '6.18.01' + +homepage = 'http://www.tcsh.org' +description = """Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). + It is a command language interpreter usable both as an interactive login shell and a shell script command + processor. It includes a command-line editor, programmable word completion, spelling correction, a history + mechanism, job control and a C-like syntax.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'dynamic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'ftp://ftp.astron.com/pub/%(namelower)s', + 'ftp://ftp.astron.com/pub/%(namelower)s/old', +] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/tcsh"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.40-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.40-dmpar.eb new file mode 100644 index 0000000000..4f97a28683 --- /dev/null +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.40-dmpar.eb @@ -0,0 +1,41 @@ +name = 'WRF' +version = '3.6.1' + +homepage = 'http://www.wrf-model.org' +description = """The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale + numerical weather prediction system designed to serve both operational forecasting and atmospheric + research needs.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 + +sources = ['%(name)sV%(version)s.TAR.gz'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] + +# csh is used by WRF install scripts +builddependencies = [('tcsh', '6.18.01')] + +dependencies = [ + ('JasPer', '1.900.1'), + ('cray-netcdf/4.3.2', EXTERNAL_MODULE), + ('cray-hdf5-parallel/1.8.13', EXTERNAL_MODULE), +] + +patches = [ + 'WRF_parallel_build_fix.patch', + 'WRF-3.6.1_known_problems.patch', + 'WRF_tests_limit-runtimes.patch', +] + +# limit parallel build to 20 +maxparallel = 20 + +buildtype = "dmpar" +versionsuffix = '-%s' % buildtype + +runtest = False + +moduleclass = 'geo' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..736d7b43ce --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.40.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True, 'dynamic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 3fd381b1986243a3ba19d848b98c4246449750e4 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Sat, 16 May 2015 17:47:47 +0200 Subject: [PATCH 1119/1217] update binutils to work with dummy --- .../b/binutils/binutils-2.25-GCC-4.9.2.eb | 7 ++--- .../easyconfigs/b/binutils/binutils-2.25.eb | 27 +++++++++++++++++++ easybuild/easyconfigs/z/zlib/zlib-1.2.8.eb | 21 +++++++++++++++ 3 files changed, 52 insertions(+), 3 deletions(-) create mode 100644 easybuild/easyconfigs/b/binutils/binutils-2.25.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8.eb diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb index e44a4bc4f7..8f92f6c007 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb @@ -11,12 +11,13 @@ source_urls = [GNU_SOURCE] toolchain = {'name': 'GCC', 'version': '4.9.2'} -dependencies = [ - ('zlib', '1.2.8'), -] +dependencies = [('zlib', '1.2.8')] + +configopts = '--with-sysroot' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] + sanity_check_paths = { 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a'] + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25.eb new file mode 100644 index 0000000000..8b1980cd7d --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'binutils' +version = '2.25' + +homepage = 'http://directory.fsf.org/project/binutils/' +description = "binutils: GNU binary utilities" + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +toolchain = {'name': 'dummy', 'version': ''} + +dependencies = [('zlib', '1.2.8')] + +configopts = '--with-sysroot' + +binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a'] + + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8.eb new file mode 100644 index 0000000000..50f8b33ec8 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From b7279aff404dced7a2306aeeecf7f96ece221900 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Sat, 16 May 2015 17:48:32 +0200 Subject: [PATCH 1120/1217] Forgotten dependency --- easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb index 8f92f6c007..f91dda00cd 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb @@ -13,6 +13,8 @@ toolchain = {'name': 'GCC', 'version': '4.9.2'} dependencies = [('zlib', '1.2.8')] +builddependencies = [('binutils', '2.25', '', True)] + configopts = '--with-sysroot' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', -- GitLab From 19fdbbcd774288f6c51a6336a0f689d350702968 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Sat, 16 May 2015 17:49:58 +0200 Subject: [PATCH 1121/1217] update gcc to use binutils --- easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb index cb9f3aa4f2..dd71a77ce5 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb @@ -5,7 +5,7 @@ homepage = 'http://gcc.gnu.org/' description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} mpfr_version = '3.1.2' @@ -22,6 +22,8 @@ sources = [ 'mpc-1.0.2.tar.gz', ] +builddependencies = [('binutils', '2.25')] + patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] checksums = [ -- GitLab From cddd0c9e8349e8c14e1285413bd907ab663eb3af Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 16 May 2015 23:40:29 +0200 Subject: [PATCH 1122/1217] add easyconfigs using CrayGNU/5.2.25 toolchain --- .../b/Bison/Bison-3.0.2-CrayGNU-5.2.25.eb | 22 ++++ .../b/bzip2/bzip2-1.0.6-CrayGNU-5.2.25.eb | 15 +++ .../c/CMake/CMake-3.2.2-CrayGNU-5.2.25.eb | 23 ++++ .../c/CP2K/CP2K-2.6.0-CrayGNU-5.2.25.eb | 38 +++++++ .../f/flex/flex-2.5.39-CrayGNU-5.2.25.eb | 14 +++ .../GROMACS-4.6.7-CrayGNU-5.2.25-mpi.eb | 38 +++++++ .../j/JasPer/JasPer-1.900.1-CrayGNU-5.2.25.eb | 21 ++++ .../l/Libint/Libint-1.1.4-CrayGNU-5.2.25.eb | 24 ++++ .../libreadline-6.3-CrayGNU-5.2.25.eb | 27 +++++ .../l/libxc/libxc-2.2.1-CrayGNU-5.2.25.eb | 32 ++++++ .../m/M4/M4-1.4.17-CrayGNU-5.2.25.eb | 23 ++++ .../n/ncurses/ncurses-5.9-CrayGNU-5.2.25.eb | 22 ++++ ...numpy-1.9.2-CrayGNU-5.2.25-Python-2.7.9.eb | 26 +++++ .../Python-2.7.9-CrayGNU-5.2.25-bare.eb | 31 +++++ .../p/Python/Python-2.7.9-CrayGNU-5.2.25.eb | 107 ++++++++++++++++++ .../s/Szip/Szip-2.1-CrayGNU-5.2.25.eb | 23 ++++ ...cipy-0.15.1-CrayGNU-5.2.25-Python-2.7.9.eb | 19 ++++ .../t/tcsh/tcsh-6.18.01-CrayGNU-5.2.25.eb | 39 +++++++ .../w/WRF/WRF-3.6.1-CrayGNU-5.2.25-dmpar.eb | 42 +++++++ .../z/zlib/zlib-1.2.8-CrayGNU-5.2.25.eb | 22 ++++ 20 files changed, 608 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.25-mpi.eb create mode 100644 easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.25-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25-bare.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.25-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.25-dmpar.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.25.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..79f11b47fe --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.25.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.2' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..3f96190606 --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.25.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..75190be28b --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.25.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.2.2' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'dynamic': True} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..43baa97a11 --- /dev/null +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.25.eb @@ -0,0 +1,38 @@ +name = 'CP2K' +version = '2.6.0' + +homepage = 'http://www.cp2k.org/' +description = """CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular + simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different + methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and + classical pair and many-body potentials. """ + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [SOURCEFORGE_SOURCE] + +patches = [ + 'CP2K-2.6.0-ifort-compiler-bug-fix.patch', + 'CP2K-2.4.0-fix_compile_date_lastsvn.patch', +] + +dependencies = [ + ('Libint', '1.1.4'), + ('libxc', '2.2.1'), +] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.2'), +] + +# don't use parallel make, results in compilation failure +# because Fortran module files aren't created before they are needed +parallel = 1 + +# regression test reports failures +ignore_regtest_fails = True + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..e9455b96ac --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.25.eb @@ -0,0 +1,14 @@ +name = 'flex' +version = '2.5.39' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.25-mpi.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.25-mpi.eb new file mode 100644 index 0000000000..4a945e2af8 --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.25-mpi.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# George Tsouloupas , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html +## +name = 'GROMACS' +version = '4.6.7' +versionsuffix = '-mpi' + +homepage = 'http://www.gromacs.org' +description = """GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'usempi': True} + +# eg. ftp://ftp.gromacs.org/pub/gromacs/gromacs-4.6.tar.gz +source_urls = [ + 'ftp://ftp.gromacs.org/pub/gromacs/', # GROMACS sources + 'http://gerrit.gromacs.org/download/', # regression tests sources +] +sources = [ + SOURCELOWER_TAR_GZ, + 'regressiontests-%(version)s.tar.gz', +] + +builddependencies = [('CMake', '3.2.2')] + +runtest = False + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..606c94876c --- /dev/null +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.25.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'JasPer' +version = '1.900.1' + +homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' +description = """The JasPer Project is an open-source initiative to provide a free + software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_ZIP] +source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] + +sanity_check_paths = { + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..e7bca79f1d --- /dev/null +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.25.eb @@ -0,0 +1,24 @@ +name = 'Libint' +version = '1.1.4' + +homepage = 'https://sourceforge.net/p/libint/' +description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body + matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'opt': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') + +configopts = "--enable-deriv --enable-r12" + +sanity_check_paths = { + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], + 'dirs':[], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..6078f8b7e2 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.25.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..79002b6ce4 --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.25.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = '2.2.1' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'opt': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS"' + +# From the libxc mailing list +# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect +# a fully working testsuite soon (unless someone wants to volunteer to do +# it, of course ) In the meantime, unless the majority of the tests +# fail, your build should be fine. +#runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc.a'], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..06f80557f1 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.25.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..95c1010bbc --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.25.eb @@ -0,0 +1,22 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True, 'dynamic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +configopts = [ + # default build, no custom configure options + '', + # the UTF-8 enabled version (ncursesw) + '--enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.25-Python-2.7.9.eb b/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.25-Python-2.7.9.eb new file mode 100644 index 0000000000..fa04b42299 --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.25-Python-2.7.9.eb @@ -0,0 +1,26 @@ +name = 'numpy' +version = '1.9.2' + +homepage = 'http://www.numpy.org' +description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: + a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran + code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, + NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be + defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCE_TAR_GZ] + +patches = ['numpy-1.8.0-mkl.patch'] + +python = 'Python' +pyver = '2.7.9' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25-bare.eb new file mode 100644 index 0000000000..09917d5025 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25-bare.eb @@ -0,0 +1,31 @@ +name = 'Python' +version = '2.7.9' +versionsuffix = '-bare' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True, 'opt': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# bare installation: no extensions included +exts_list = [] + +buildopts = 'LINKCC="$CC -dynamic"' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..adcd0caa18 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25.eb @@ -0,0 +1,107 @@ +name = 'Python' +version = '2.7.9' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.1' +scipyversion = '0.14.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +buildopts = 'LINKCC="$CC -dynamic"' + +# order is important! +# package versions updated Jan 19th 2015 +exts_list = [ + ('setuptools', '11.3.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '6.0.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.4', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-1.8.0-mkl.patch', # % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.21.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.0', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.15.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.13', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..0772f31b94 --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.25.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True, 'dynamic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.so"] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.25-Python-2.7.9.eb b/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.25-Python-2.7.9.eb new file mode 100644 index 0000000000..be06b3e907 --- /dev/null +++ b/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.25-Python-2.7.9.eb @@ -0,0 +1,19 @@ +name = 'scipy' +version = '0.15.1' +versionsuffix = '-Python-2.7.9' + +homepage = 'http://www.scipy.org' +description = """SciPy is a collection of mathematical algorithms and convenience + functions built on the Numpy extension for Python.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True} + +source_urls = [('http://sourceforge.net/projects/scipy/files/scipy/%(version)s', 'download')] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('numpy', '1.9.2', versionsuffix), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..c678adaf68 --- /dev/null +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.25.eb @@ -0,0 +1,39 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit +# Authors:: Valentin Plugaru +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html +## +easyblock = 'ConfigureMake' + +name = 'tcsh' +version = '6.18.01' + +homepage = 'http://www.tcsh.org' +description = """Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). + It is a command language interpreter usable both as an interactive login shell and a shell script command + processor. It includes a command-line editor, programmable word completion, spelling correction, a history + mechanism, job control and a C-like syntax.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'dynamic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'ftp://ftp.astron.com/pub/%(namelower)s', + 'ftp://ftp.astron.com/pub/%(namelower)s/old', +] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/tcsh"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.25-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.25-dmpar.eb new file mode 100644 index 0000000000..b4103d924f --- /dev/null +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.25-dmpar.eb @@ -0,0 +1,42 @@ +name = 'WRF' +version = '3.6.1' + +homepage = 'http://www.wrf-model.org' +description = """The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale + numerical weather prediction system designed to serve both operational forecasting and atmospheric + research needs.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 + +sources = ['%(name)sV%(version)s.TAR.gz'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] + +# use tcsh provided by system, using an EB-provided tcsh results in a hanging build command on some Cray systems +osdependencies = ['tcsh'] +#builddependencies = [('tcsh', '6.18.01')] + +dependencies = [ + ('JasPer', '1.900.1'), + ('cray-netcdf/4.3.2', EXTERNAL_MODULE), + ('cray-hdf5-parallel/1.8.13', EXTERNAL_MODULE), +] + +patches = [ + 'WRF_parallel_build_fix.patch', + 'WRF-3.6.1_known_problems.patch', + 'WRF_tests_limit-runtimes.patch', +] + +# limit parallel build to 20 +maxparallel = 20 + +buildtype = "dmpar" +versionsuffix = '-%s' % buildtype + +runtest = False + +moduleclass = 'geo' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..17db62ce98 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.25.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True, 'dynamic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 977a898d0a0a34f670efb8eae3eb8eb8264462aa Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 16 May 2015 17:33:21 +0200 Subject: [PATCH 1123/1217] add easyconfigs using CrayGNU/5.2.40 toolchain --- .../b/Bison/Bison-3.0.2-CrayGNU-5.2.40.eb | 22 ++++ .../b/bzip2/bzip2-1.0.6-CrayGNU-5.2.40.eb | 15 +++ .../c/CMake/CMake-3.2.2-CrayGNU-5.2.40.eb | 23 ++++ .../c/CP2K/CP2K-2.6.0-CrayGNU-5.2.40.eb | 38 +++++++ .../f/flex/flex-2.5.39-CrayGNU-5.2.40.eb | 14 +++ .../GROMACS-4.6.7-CrayGNU-5.2.40-mpi.eb | 38 +++++++ .../j/JasPer/JasPer-1.900.1-CrayGNU-5.2.40.eb | 21 ++++ .../l/Libint/Libint-1.1.4-CrayGNU-5.2.40.eb | 24 ++++ .../libreadline-6.3-CrayGNU-5.2.40.eb | 27 +++++ .../l/libxc/libxc-2.2.1-CrayGNU-5.2.40.eb | 32 ++++++ .../m/M4/M4-1.4.17-CrayGNU-5.2.40.eb | 23 ++++ .../n/ncurses/ncurses-5.9-CrayGNU-5.2.40.eb | 22 ++++ ...numpy-1.9.2-CrayGNU-5.2.40-Python-2.7.9.eb | 26 +++++ .../Python-2.7.9-CrayGNU-5.2.40-bare.eb | 31 +++++ .../p/Python/Python-2.7.9-CrayGNU-5.2.40.eb | 107 ++++++++++++++++++ .../s/Szip/Szip-2.1-CrayGNU-5.2.40.eb | 23 ++++ ...cipy-0.15.1-CrayGNU-5.2.40-Python-2.7.9.eb | 19 ++++ .../t/tcsh/tcsh-6.18.01-CrayGNU-5.2.40.eb | 39 +++++++ .../w/WRF/WRF-3.6.1-CrayGNU-5.2.40-dmpar.eb | 41 +++++++ .../z/zlib/zlib-1.2.8-CrayGNU-5.2.40.eb | 22 ++++ 20 files changed, 607 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.40-mpi.eb create mode 100644 easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.40-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40-bare.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.40-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.40.eb create mode 100644 easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.40-dmpar.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.40.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..67832ccafa --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.40.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.2' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..58489cb68f --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.40.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..275dc8cada --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.40.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.2.2' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'dynamic': True} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..eea0ba5f73 --- /dev/null +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.40.eb @@ -0,0 +1,38 @@ +name = 'CP2K' +version = '2.6.0' + +homepage = 'http://www.cp2k.org/' +description = """CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular + simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different + methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and + classical pair and many-body potentials. """ + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [SOURCEFORGE_SOURCE] + +patches = [ + 'CP2K-2.6.0-ifort-compiler-bug-fix.patch', + 'CP2K-2.4.0-fix_compile_date_lastsvn.patch', +] + +dependencies = [ + ('Libint', '1.1.4'), + ('libxc', '2.2.1'), +] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.2'), +] + +# don't use parallel make, results in compilation failure +# because Fortran module files aren't created before they are needed +parallel = 1 + +# regression test reports failures +ignore_regtest_fails = True + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..470ec059e0 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.40.eb @@ -0,0 +1,14 @@ +name = 'flex' +version = '2.5.39' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.40-mpi.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.40-mpi.eb new file mode 100644 index 0000000000..239ea564c8 --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.40-mpi.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# George Tsouloupas , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html +## +name = 'GROMACS' +version = '4.6.7' +versionsuffix = '-mpi' + +homepage = 'http://www.gromacs.org' +description = """GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'usempi': True} + +# eg. ftp://ftp.gromacs.org/pub/gromacs/gromacs-4.6.tar.gz +source_urls = [ + 'ftp://ftp.gromacs.org/pub/gromacs/', # GROMACS sources + 'http://gerrit.gromacs.org/download/', # regression tests sources +] +sources = [ + SOURCELOWER_TAR_GZ, + 'regressiontests-%(version)s.tar.gz', +] + +builddependencies = [('CMake', '3.2.2')] + +runtest = False + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..cef32fd43d --- /dev/null +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.40.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'JasPer' +version = '1.900.1' + +homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' +description = """The JasPer Project is an open-source initiative to provide a free + software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_ZIP] +source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] + +sanity_check_paths = { + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..4f2df44352 --- /dev/null +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.40.eb @@ -0,0 +1,24 @@ +name = 'Libint' +version = '1.1.4' + +homepage = 'https://sourceforge.net/p/libint/' +description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body + matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'opt': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') + +configopts = "--enable-deriv --enable-r12" + +sanity_check_paths = { + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], + 'dirs':[], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..7264a9260e --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.40.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..80df7f4320 --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.40.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = '2.2.1' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'opt': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS"' + +# From the libxc mailing list +# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect +# a fully working testsuite soon (unless someone wants to volunteer to do +# it, of course ) In the meantime, unless the majority of the tests +# fail, your build should be fine. +#runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc.a'], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..d1ac7167dc --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.40.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..af63de1cff --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.40.eb @@ -0,0 +1,22 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True, 'dynamic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +configopts = [ + # default build, no custom configure options + '', + # the UTF-8 enabled version (ncursesw) + '--enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.40-Python-2.7.9.eb b/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.40-Python-2.7.9.eb new file mode 100644 index 0000000000..7d81f886bc --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.40-Python-2.7.9.eb @@ -0,0 +1,26 @@ +name = 'numpy' +version = '1.9.2' + +homepage = 'http://www.numpy.org' +description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: + a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran + code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, + NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be + defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCE_TAR_GZ] + +patches = ['numpy-1.8.0-mkl.patch'] + +python = 'Python' +pyver = '2.7.9' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40-bare.eb new file mode 100644 index 0000000000..10c6659238 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40-bare.eb @@ -0,0 +1,31 @@ +name = 'Python' +version = '2.7.9' +versionsuffix = '-bare' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True, 'opt': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# bare installation: no extensions included +exts_list = [] + +buildopts = 'LINKCC="$CC -dynamic"' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..deac7ecaca --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40.eb @@ -0,0 +1,107 @@ +name = 'Python' +version = '2.7.9' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.1' +scipyversion = '0.14.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +buildopts = 'LINKCC="$CC -dynamic"' + +# order is important! +# package versions updated Jan 19th 2015 +exts_list = [ + ('setuptools', '11.3.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '6.0.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.4', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-1.8.0-mkl.patch', # % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.21.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.0', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.15.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.13', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..d98933db4b --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.40.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True, 'dynamic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.so"] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.40-Python-2.7.9.eb b/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.40-Python-2.7.9.eb new file mode 100644 index 0000000000..adb35688b3 --- /dev/null +++ b/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.40-Python-2.7.9.eb @@ -0,0 +1,19 @@ +name = 'scipy' +version = '0.15.1' +versionsuffix = '-Python-2.7.9' + +homepage = 'http://www.scipy.org' +description = """SciPy is a collection of mathematical algorithms and convenience + functions built on the Numpy extension for Python.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True} + +source_urls = [('http://sourceforge.net/projects/scipy/files/scipy/%(version)s', 'download')] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('numpy', '1.9.2', versionsuffix), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..171465e133 --- /dev/null +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.40.eb @@ -0,0 +1,39 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit +# Authors:: Valentin Plugaru +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html +## +easyblock = 'ConfigureMake' + +name = 'tcsh' +version = '6.18.01' + +homepage = 'http://www.tcsh.org' +description = """Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). + It is a command language interpreter usable both as an interactive login shell and a shell script command + processor. It includes a command-line editor, programmable word completion, spelling correction, a history + mechanism, job control and a C-like syntax.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'dynamic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'ftp://ftp.astron.com/pub/%(namelower)s', + 'ftp://ftp.astron.com/pub/%(namelower)s/old', +] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/tcsh"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.40-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.40-dmpar.eb new file mode 100644 index 0000000000..4f97a28683 --- /dev/null +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.40-dmpar.eb @@ -0,0 +1,41 @@ +name = 'WRF' +version = '3.6.1' + +homepage = 'http://www.wrf-model.org' +description = """The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale + numerical weather prediction system designed to serve both operational forecasting and atmospheric + research needs.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 + +sources = ['%(name)sV%(version)s.TAR.gz'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] + +# csh is used by WRF install scripts +builddependencies = [('tcsh', '6.18.01')] + +dependencies = [ + ('JasPer', '1.900.1'), + ('cray-netcdf/4.3.2', EXTERNAL_MODULE), + ('cray-hdf5-parallel/1.8.13', EXTERNAL_MODULE), +] + +patches = [ + 'WRF_parallel_build_fix.patch', + 'WRF-3.6.1_known_problems.patch', + 'WRF_tests_limit-runtimes.patch', +] + +# limit parallel build to 20 +maxparallel = 20 + +buildtype = "dmpar" +versionsuffix = '-%s' % buildtype + +runtest = False + +moduleclass = 'geo' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.40.eb new file mode 100644 index 0000000000..736d7b43ce --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.40.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchainopts = {'pic': True, 'dynamic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 181bd951a6fd8505b74c2c275bc581ffe19a9148 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 16 May 2015 23:40:29 +0200 Subject: [PATCH 1124/1217] add easyconfigs using CrayGNU/5.2.25 toolchain --- .../b/Bison/Bison-3.0.2-CrayGNU-5.2.25.eb | 22 ++++ .../b/bzip2/bzip2-1.0.6-CrayGNU-5.2.25.eb | 15 +++ .../c/CMake/CMake-3.2.2-CrayGNU-5.2.25.eb | 23 ++++ .../c/CP2K/CP2K-2.6.0-CrayGNU-5.2.25.eb | 38 +++++++ .../f/flex/flex-2.5.39-CrayGNU-5.2.25.eb | 14 +++ .../GROMACS-4.6.7-CrayGNU-5.2.25-mpi.eb | 38 +++++++ .../j/JasPer/JasPer-1.900.1-CrayGNU-5.2.25.eb | 21 ++++ .../l/Libint/Libint-1.1.4-CrayGNU-5.2.25.eb | 24 ++++ .../libreadline-6.3-CrayGNU-5.2.25.eb | 27 +++++ .../l/libxc/libxc-2.2.1-CrayGNU-5.2.25.eb | 32 ++++++ .../m/M4/M4-1.4.17-CrayGNU-5.2.25.eb | 23 ++++ .../n/ncurses/ncurses-5.9-CrayGNU-5.2.25.eb | 22 ++++ ...numpy-1.9.2-CrayGNU-5.2.25-Python-2.7.9.eb | 26 +++++ .../Python-2.7.9-CrayGNU-5.2.25-bare.eb | 31 +++++ .../p/Python/Python-2.7.9-CrayGNU-5.2.25.eb | 107 ++++++++++++++++++ .../s/Szip/Szip-2.1-CrayGNU-5.2.25.eb | 23 ++++ ...cipy-0.15.1-CrayGNU-5.2.25-Python-2.7.9.eb | 19 ++++ .../t/tcsh/tcsh-6.18.01-CrayGNU-5.2.25.eb | 39 +++++++ .../w/WRF/WRF-3.6.1-CrayGNU-5.2.25-dmpar.eb | 42 +++++++ .../z/zlib/zlib-1.2.8-CrayGNU-5.2.25.eb | 22 ++++ 20 files changed, 608 insertions(+) create mode 100644 easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.25-mpi.eb create mode 100644 easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.25-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25-bare.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.25-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.25.eb create mode 100644 easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.25-dmpar.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.25.eb diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..79f11b47fe --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.25.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.2' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..3f96190606 --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.25.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..75190be28b --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.25.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.2.2' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'dynamic': True} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..43baa97a11 --- /dev/null +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.25.eb @@ -0,0 +1,38 @@ +name = 'CP2K' +version = '2.6.0' + +homepage = 'http://www.cp2k.org/' +description = """CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular + simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different + methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and + classical pair and many-body potentials. """ + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [SOURCEFORGE_SOURCE] + +patches = [ + 'CP2K-2.6.0-ifort-compiler-bug-fix.patch', + 'CP2K-2.4.0-fix_compile_date_lastsvn.patch', +] + +dependencies = [ + ('Libint', '1.1.4'), + ('libxc', '2.2.1'), +] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.2'), +] + +# don't use parallel make, results in compilation failure +# because Fortran module files aren't created before they are needed +parallel = 1 + +# regression test reports failures +ignore_regtest_fails = True + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..e9455b96ac --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.25.eb @@ -0,0 +1,14 @@ +name = 'flex' +version = '2.5.39' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.25-mpi.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.25-mpi.eb new file mode 100644 index 0000000000..4a945e2af8 --- /dev/null +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.25-mpi.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg / LCSB, Cyprus Institute / CaSToRC, Ghent University +# Authors:: Wiktor Jurkowski , Fotis Georgatos , \ +# George Tsouloupas , Kenneth Hoste +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html +## +name = 'GROMACS' +version = '4.6.7' +versionsuffix = '-mpi' + +homepage = 'http://www.gromacs.org' +description = """GROMACS is a versatile package to perform molecular dynamics, + i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'usempi': True} + +# eg. ftp://ftp.gromacs.org/pub/gromacs/gromacs-4.6.tar.gz +source_urls = [ + 'ftp://ftp.gromacs.org/pub/gromacs/', # GROMACS sources + 'http://gerrit.gromacs.org/download/', # regression tests sources +] +sources = [ + SOURCELOWER_TAR_GZ, + 'regressiontests-%(version)s.tar.gz', +] + +builddependencies = [('CMake', '3.2.2')] + +runtest = False + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..606c94876c --- /dev/null +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.25.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'JasPer' +version = '1.900.1' + +homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' +description = """The JasPer Project is an open-source initiative to provide a free + software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_ZIP] +source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] + +sanity_check_paths = { + 'files': ["bin/jasper", "lib/libjasper.a"], + 'dirs': ["include"], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..e7bca79f1d --- /dev/null +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.25.eb @@ -0,0 +1,24 @@ +name = 'Libint' +version = '1.1.4' + +homepage = 'https://sourceforge.net/p/libint/' +description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body + matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'opt': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') + +configopts = "--enable-deriv --enable-r12" + +sanity_check_paths = { + 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + + ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], + 'dirs':[], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..6078f8b7e2 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.25.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..79002b6ce4 --- /dev/null +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.25.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libxc' +version = '2.2.1' + +homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' +description = """Libxc is a library of exchange-correlation functionals for density-functional theory. + The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'opt': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] + +configopts = 'FC="$F77" FCFLAGS="$FFLAGS"' + +# From the libxc mailing list +# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect +# a fully working testsuite soon (unless someone wants to volunteer to do +# it, of course ) In the meantime, unless the majority of the tests +# fail, your build should be fine. +#runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libxc.a'], + 'dirs': ['include'], +} + +parallel = 1 + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..06f80557f1 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.25.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..95c1010bbc --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.25.eb @@ -0,0 +1,22 @@ +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True, 'dynamic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +configopts = [ + # default build, no custom configure options + '', + # the UTF-8 enabled version (ncursesw) + '--enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.25-Python-2.7.9.eb b/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.25-Python-2.7.9.eb new file mode 100644 index 0000000000..fa04b42299 --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.25-Python-2.7.9.eb @@ -0,0 +1,26 @@ +name = 'numpy' +version = '1.9.2' + +homepage = 'http://www.numpy.org' +description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: + a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran + code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, + NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be + defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCE_TAR_GZ] + +patches = ['numpy-1.8.0-mkl.patch'] + +python = 'Python' +pyver = '2.7.9' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25-bare.eb new file mode 100644 index 0000000000..09917d5025 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25-bare.eb @@ -0,0 +1,31 @@ +name = 'Python' +version = '2.7.9' +versionsuffix = '-bare' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True, 'opt': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# bare installation: no extensions included +exts_list = [] + +buildopts = 'LINKCC="$CC -dynamic"' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..adcd0caa18 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25.eb @@ -0,0 +1,107 @@ +name = 'Python' +version = '2.7.9' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.1' +scipyversion = '0.14.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +buildopts = 'LINKCC="$CC -dynamic"' + +# order is important! +# package versions updated Jan 19th 2015 +exts_list = [ + ('setuptools', '11.3.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '6.0.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.4', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-1.8.0-mkl.patch', # % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('lockfile', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.21.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.0', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.15.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.13', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..0772f31b94 --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.25.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True, 'dynamic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.so"] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.25-Python-2.7.9.eb b/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.25-Python-2.7.9.eb new file mode 100644 index 0000000000..be06b3e907 --- /dev/null +++ b/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.25-Python-2.7.9.eb @@ -0,0 +1,19 @@ +name = 'scipy' +version = '0.15.1' +versionsuffix = '-Python-2.7.9' + +homepage = 'http://www.scipy.org' +description = """SciPy is a collection of mathematical algorithms and convenience + functions built on the Numpy extension for Python.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True} + +source_urls = [('http://sourceforge.net/projects/scipy/files/scipy/%(version)s', 'download')] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('numpy', '1.9.2', versionsuffix), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..c678adaf68 --- /dev/null +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.25.eb @@ -0,0 +1,39 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit +# Authors:: Valentin Plugaru +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html +## +easyblock = 'ConfigureMake' + +name = 'tcsh' +version = '6.18.01' + +homepage = 'http://www.tcsh.org' +description = """Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). + It is a command language interpreter usable both as an interactive login shell and a shell script command + processor. It includes a command-line editor, programmable word completion, spelling correction, a history + mechanism, job control and a C-like syntax.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'dynamic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'ftp://ftp.astron.com/pub/%(namelower)s', + 'ftp://ftp.astron.com/pub/%(namelower)s/old', +] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ["bin/tcsh"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.25-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.25-dmpar.eb new file mode 100644 index 0000000000..b4103d924f --- /dev/null +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.25-dmpar.eb @@ -0,0 +1,42 @@ +name = 'WRF' +version = '3.6.1' + +homepage = 'http://www.wrf-model.org' +description = """The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale + numerical weather prediction system designed to serve both operational forecasting and atmospheric + research needs.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 + +sources = ['%(name)sV%(version)s.TAR.gz'] +source_urls = [ + 'http://www2.mmm.ucar.edu/wrf/src/', + 'http://www.mmm.ucar.edu/wrf/src/', +] + +# use tcsh provided by system, using an EB-provided tcsh results in a hanging build command on some Cray systems +osdependencies = ['tcsh'] +#builddependencies = [('tcsh', '6.18.01')] + +dependencies = [ + ('JasPer', '1.900.1'), + ('cray-netcdf/4.3.2', EXTERNAL_MODULE), + ('cray-hdf5-parallel/1.8.13', EXTERNAL_MODULE), +] + +patches = [ + 'WRF_parallel_build_fix.patch', + 'WRF-3.6.1_known_problems.patch', + 'WRF_tests_limit-runtimes.patch', +] + +# limit parallel build to 20 +maxparallel = 20 + +buildtype = "dmpar" +versionsuffix = '-%s' % buildtype + +runtest = False + +moduleclass = 'geo' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.25.eb new file mode 100644 index 0000000000..17db62ce98 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.25.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchainopts = {'pic': True, 'dynamic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 2e364489f116e52784d5999acb4ed117fc5b0d5c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 16 May 2015 12:15:28 +0200 Subject: [PATCH 1129/1217] bump version to 2.1.1 and update release notes --- RELEASE_NOTES | 14 +++++++++++++- setup.py | 2 +- 2 files changed, 14 insertions(+), 2 deletions(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index c00535497a..d718187f88 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -3,9 +3,21 @@ For more detailed information, please see the git log. These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html. -The latest version of easybuild-easyconfig provides 3,618 easyconfig files, for 608 different software packages, +The latest version of easybuild-easyconfig provides 3,649 easyconfig files, for 611 different software packages, 33 different (compiler) toolchains and 8 software bundles. +v2.1.1 (May 18th 2015) +---------------------- + +bugfix release +- added example easyconfig files for 3 new software packages: + networkx (#1592), Platanus (#1597), SaguaroGW (#1600) +- added new easyconfigs for existing toolchains: ictce/7.3.5, CrayCCE/5.2.40, CrayGNU/5.2.40, CrayIntel/5.2.40 +- added additional easyconfigs for various supported software packages: version updates, different toolchains, ... + including Boost 1.58.0, GROMACS 5.0.4, Python 3.4.3 +- various bug fixes, including: + - enable usempi in GROMACS easyconfig using CrayGNU toolchain (as required by GROMACS easyblock) (#1590) + v2.1.0 (April 30th 2015) ------------------------ diff --git a/setup.py b/setup.py index e89248dca4..7111a82776 100644 --- a/setup.py +++ b/setup.py @@ -41,7 +41,7 @@ from distutils import log # note: release candidates should be versioned as a pre-release, e.g. "1.1rc1" # 1.1-rc1 would indicate a post-release, i.e., and update of 1.1, so beware! -VERSION = '2.1.1dev' +VERSION = '2.1.1' API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) -- GitLab From b4269fd81f4a535ab684aaf158614bc180a8cf7b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sat, 16 May 2015 16:06:08 +0200 Subject: [PATCH 1130/1217] include #1595, #1609 in v2.1.1 release notes --- RELEASE_NOTES | 2 ++ 1 file changed, 2 insertions(+) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index d718187f88..8466fcf171 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -17,6 +17,8 @@ bugfix release including Boost 1.58.0, GROMACS 5.0.4, Python 3.4.3 - various bug fixes, including: - enable usempi in GROMACS easyconfig using CrayGNU toolchain (as required by GROMACS easyblock) (#1590) + - use system-provided tcsh when building WRF on Cray systems, to avoid hanging build (#1595) + - only use 'dynamic' toolchain option, not 'shared', in easyconfigs using Cray toolchain (#1609) v2.1.0 (April 30th 2015) ------------------------ -- GitLab From 2baae9592738f1fed3fa6e36fdca64d7090910c8 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Sun, 17 May 2015 09:44:45 +0200 Subject: [PATCH 1131/1217] includ PRs #1610 and #1611 in release notes --- RELEASE_NOTES | 1 + 1 file changed, 1 insertion(+) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 8466fcf171..4f2bb65a95 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -13,6 +13,7 @@ bugfix release - added example easyconfig files for 3 new software packages: networkx (#1592), Platanus (#1597), SaguaroGW (#1600) - added new easyconfigs for existing toolchains: ictce/7.3.5, CrayCCE/5.2.40, CrayGNU/5.2.40, CrayIntel/5.2.40 +- added easyconfigs using CrayGNU/5.2.25 and CrayGNU/5.2.40 toolchains (#1610, #1611) - added additional easyconfigs for various supported software packages: version updates, different toolchains, ... including Boost 1.58.0, GROMACS 5.0.4, Python 3.4.3 - various bug fixes, including: -- GitLab From 24dd63aaae7a34e34d0119be08d217eaf06b7e34 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 18 May 2015 09:02:48 +0200 Subject: [PATCH 1132/1217] fix easyconfigs count --- RELEASE_NOTES | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/RELEASE_NOTES b/RELEASE_NOTES index 4f2bb65a95..b593156524 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -3,7 +3,7 @@ For more detailed information, please see the git log. These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html. -The latest version of easybuild-easyconfig provides 3,649 easyconfig files, for 611 different software packages, +The latest version of easybuild-easyconfig provides 3,689 easyconfig files, for 611 different software packages, 33 different (compiler) toolchains and 8 software bundles. v2.1.1 (May 18th 2015) -- GitLab From a04d50f343f8599e96d1bf8d68f4934cdadf502f Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 18 May 2015 13:50:25 +0200 Subject: [PATCH 1133/1217] {bio}[intel/2015a] MrBayes 3.2.5 --- .../m/MrBayes/MrBayes-3.2.5-intel-2015a.eb | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 easybuild/easyconfigs/m/MrBayes/MrBayes-3.2.5-intel-2015a.eb diff --git a/easybuild/easyconfigs/m/MrBayes/MrBayes-3.2.5-intel-2015a.eb b/easybuild/easyconfigs/m/MrBayes/MrBayes-3.2.5-intel-2015a.eb new file mode 100644 index 0000000000..5836ec7f0f --- /dev/null +++ b/easybuild/easyconfigs/m/MrBayes/MrBayes-3.2.5-intel-2015a.eb @@ -0,0 +1,18 @@ +name = 'MrBayes' +version = '3.2.5' + +homepage = 'http://mrbayes.csit.fsu.edu' +description = "MrBayes is a program for the Bayesian estimation of phylogeny." + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ["http://downloads.sourceforge.net/project/mrbayes/mrbayes/%(version)s"] + +dependencies = [ + ('beagle-lib', '20141202'), + ('libreadline', '6.3'), +] + +moduleclass = 'bio' -- GitLab From 2b9145a950cdf0a5a90e027ced75f7130d08b2e7 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 18 May 2015 14:10:47 +0200 Subject: [PATCH 1134/1217] drop zlib dep in foss & gompi --- easybuild/easyconfigs/f/foss/foss-2015.01.eb | 1 - easybuild/easyconfigs/g/gompi/gompi-2015.01.eb | 1 - 2 files changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/f/foss/foss-2015.01.eb b/easybuild/easyconfigs/f/foss/foss-2015.01.eb index dfce67f25b..9c0f07775d 100644 --- a/easybuild/easyconfigs/f/foss/foss-2015.01.eb +++ b/easybuild/easyconfigs/f/foss/foss-2015.01.eb @@ -29,7 +29,6 @@ comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) # For binutils, stick to http://wiki.osdev.org/Cross-Compiler_Successful_Builds dependencies = [ comp, - ('zlib', '1.2.8', '', comp), ('binutils', '2.25', '', comp), ('OpenMPI', '1.8.4', '', comp), (blaslib, blasver, blassuff, comp), diff --git a/easybuild/easyconfigs/g/gompi/gompi-2015.01.eb b/easybuild/easyconfigs/g/gompi/gompi-2015.01.eb index e59112cb7f..1dd2af3813 100644 --- a/easybuild/easyconfigs/g/gompi/gompi-2015.01.eb +++ b/easybuild/easyconfigs/g/gompi/gompi-2015.01.eb @@ -16,7 +16,6 @@ comp = (compname, compver) # compiler toolchain dependencies dependencies = [ comp, - ('zlib', '1.2.8', '', comp), ('binutils', '2.25', '', comp), ('OpenMPI', '1.8.4', '', comp), ] -- GitLab From 15e64083305ccf18fdeb24d6dc700aa5f3f3d327 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 18 May 2015 14:13:14 +0200 Subject: [PATCH 1135/1217] forgotten toolchains --- easybuild/easyconfigs/g/gompi/gompi-1.9.0.eb | 1 - easybuild/easyconfigs/g/goolf/goolf-1.9.0.eb | 1 - 2 files changed, 2 deletions(-) diff --git a/easybuild/easyconfigs/g/gompi/gompi-1.9.0.eb b/easybuild/easyconfigs/g/gompi/gompi-1.9.0.eb index f50cd40115..f8cc89cff5 100644 --- a/easybuild/easyconfigs/g/gompi/gompi-1.9.0.eb +++ b/easybuild/easyconfigs/g/gompi/gompi-1.9.0.eb @@ -16,7 +16,6 @@ comp = (compname, compver) # compiler toolchain dependencies dependencies = [ comp, - ('zlib', '1.2.8', '', comp), ('binutils', '2.25', '', comp), ('OpenMPI', '1.8.4', '', comp), ] diff --git a/easybuild/easyconfigs/g/goolf/goolf-1.9.0.eb b/easybuild/easyconfigs/g/goolf/goolf-1.9.0.eb index 0f2aea75a4..feeb6330ff 100644 --- a/easybuild/easyconfigs/g/goolf/goolf-1.9.0.eb +++ b/easybuild/easyconfigs/g/goolf/goolf-1.9.0.eb @@ -28,7 +28,6 @@ comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) # because of toolchain preperation functions dependencies = [ comp, - ('zlib', '1.2.8', '', comp), ('binutils', '2.25', '', comp), ('OpenMPI', '1.8.4', '', comp), (blaslib, blasver, blassuff, comp), -- GitLab From 462c15dfe12a4805d0ef0a4342537242f4b112bb Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 18 May 2015 16:10:12 +0200 Subject: [PATCH 1136/1217] static link with zlib in dummy binutils --- easybuild/easyconfigs/b/binutils/binutils-2.25.eb | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25.eb index 8b1980cd7d..e3e98b2548 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25.eb @@ -11,7 +11,11 @@ source_urls = [GNU_SOURCE] toolchain = {'name': 'dummy', 'version': ''} -dependencies = [('zlib', '1.2.8')] +builddependencies = [('zlib', '1.2.8')] + +# statically link with zlib +preconfigopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' +prebuildopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' configopts = '--with-sysroot' -- GitLab From a164a54aacab9104326fb3cd237753ba3e4830ed Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Mon, 18 May 2015 16:17:37 +0200 Subject: [PATCH 1137/1217] clearfy static linking zlib in binutils --- easybuild/easyconfigs/b/binutils/binutils-2.25.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25.eb index e3e98b2548..9a9d28a75d 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25.eb @@ -13,7 +13,7 @@ toolchain = {'name': 'dummy', 'version': ''} builddependencies = [('zlib', '1.2.8')] -# statically link with zlib +# statically link with zlib, to avoid runtime dependency on zlib preconfigopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' prebuildopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' -- GitLab From 24863a480808fdfde716c66fdb0f88a332155c94 Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Mon, 18 May 2015 10:58:05 -0400 Subject: [PATCH 1138/1217] fixing version in sanity checks --- easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb index ec8aac5c94..7597335a90 100644 --- a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb @@ -20,11 +20,12 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://cache.ruby-lang.org/pub/ruby/'] +# Due to the way versioning works now with ruby, the libraries and such are labelled major.minor.0 sanity_check_paths = { 'files': ['bin/ruby', 'bin/rake', 'bin/gem', 'bin/testrb', 'bin/erb', - 'bin/ri', 'bin/irb', 'bin/rdoc', 'lib/libruby.so.2.1.0', + 'bin/ri', 'bin/irb', 'bin/rdoc', 'lib/libruby.so.%(version_major_minor)s.0', 'lib/libruby-static.a', 'lib/libruby.so'], - 'dirs': ['lib/ruby/2.1.0', 'lib/ruby/gems', 'lib/pkgconfig', 'include/ruby-2.1.0'] + 'dirs': ['lib/ruby/%(version_major_minor)s.0', 'lib/ruby/gems', 'lib/pkgconfig', 'include/ruby-%(version_major_minor)s.0'] } configopts = "--disable-install-doc --enable-shared" -- GitLab From ea7acab60f40e453856e5323a005a7256e82b90c Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Mon, 18 May 2015 11:14:18 -0400 Subject: [PATCH 1139/1217] moving configopts to easyblock and updating other comments per PR comments --- easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb | 9 +++------ 1 file changed, 3 insertions(+), 6 deletions(-) diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb index 7597335a90..d422f5a2f3 100644 --- a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb @@ -28,17 +28,12 @@ sanity_check_paths = { 'dirs': ['lib/ruby/%(version_major_minor)s.0', 'lib/ruby/gems', 'lib/pkgconfig', 'include/ruby-%(version_major_minor)s.0'] } -configopts = "--disable-install-doc --enable-shared" - -moduleclass = 'lang' - -name_tmpl = '%(name)s-%(version)s.gem' ext_options = { 'source_urls': [ 'http://rubygems.org/downloads/', # gem archive ], - 'source_tmpl': name_tmpl, + 'source_tmpl': '%(name)s-%(version)s.gem', } exts_list = [ @@ -51,3 +46,5 @@ exts_list = [ ('clamp', '0.6.4', ext_options), ('fpm', '1.3.3', ext_options), ] + +moduleclass = 'lang' -- GitLab From b97ff1c4e5b44c4ea3f935b1d1ed1fbbcb67e668 Mon Sep 17 00:00:00 2001 From: Robert Schmidt Date: Mon, 18 May 2015 11:16:12 -0400 Subject: [PATCH 1140/1217] don't bother committing foss version --- .../r/Ruby/Ruby-2.1.5-foss-2015a.eb | 33 ------------------- .../r/Ruby/Ruby-2.1.5-intel-2014b.eb | 33 ------------------- 2 files changed, 66 deletions(-) delete mode 100644 easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb delete mode 100644 easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb deleted file mode 100644 index c585ab1d31..0000000000 --- a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb +++ /dev/null @@ -1,33 +0,0 @@ -# With <3 for EasyBuild -# -# EasyConfig for Ruby 2.1: -# ---------------------------------------------------------------------------- -# Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH -# License: MIT -# Authors: Aaron Zauner -# ---------------------------------------------------------------------------- - -name = 'Ruby' -version = '2.1.5' - -homepage = 'https://www.ruby-lang.org' -description = """Ruby is a dynamic, open source programming language with - a focus on simplicity and productivity. It has an elegant syntax that is - natural to read and easy to write.""" - -toolchain = {'name': 'foss', 'version': '2015a'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://cache.ruby-lang.org/pub/ruby/'] - -sanity_check_paths = { - 'files': ['bin/ruby', 'bin/rake', 'bin/gem', 'bin/testrb', 'bin/erb', - 'bin/ri', 'bin/irb', 'bin/rdoc', 'lib/libruby.so.2.1.0', - 'lib/libruby-static.a', 'lib/libruby.so'], - 'dirs': ['lib/ruby/2.1.0', 'lib/ruby/gems', 'lib/pkgconfig', 'include/ruby-2.1.0'] -} - -configopts = "--disable-install-doc --enable-shared" - -moduleclass = 'lang' - diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb deleted file mode 100644 index 32eca44aae..0000000000 --- a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb +++ /dev/null @@ -1,33 +0,0 @@ -# With <3 for EasyBuild -# -# EasyConfig for Ruby 2.1: -# ---------------------------------------------------------------------------- -# Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH -# License: MIT -# Authors: Aaron Zauner -# ---------------------------------------------------------------------------- -easyblock = 'ConfigureMake' - -name = 'Ruby' -version = '2.1.5' - -homepage = 'https://www.ruby-lang.org' -description = """Ruby is a dynamic, open source programming language with - a focus on simplicity and productivity. It has an elegant syntax that is - natural to read and easy to write.""" - -toolchain = {'name': 'intel', 'version': '2014b'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://cache.ruby-lang.org/pub/ruby/'] - -sanity_check_paths = { - 'files': ['bin/ruby', 'bin/rake', 'bin/gem', 'bin/testrb', 'bin/erb', - 'bin/ri', 'bin/irb', 'bin/rdoc', 'lib/libruby.so.2.1.0', - 'lib/libruby-static.a', 'lib/libruby.so'], - 'dirs': ['lib/ruby/2.1.0', 'lib/ruby/gems', 'lib/pkgconfig', 'include/ruby-2.1.0'] -} - -configopts = "--disable-install-doc --enable-shared" - -moduleclass = 'lang' -- GitLab From d49bb8dfb55e1d67e8d8e192ee1fd1b22b33ea80 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 18 May 2015 18:32:14 +0200 Subject: [PATCH 1141/1217] {tools}[dummy] EasyBuild v2.1.1 --- .../e/EasyBuild/EasyBuild-2.1.1.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb new file mode 100644 index 0000000000..f6127ef3f7 --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb @@ -0,0 +1,31 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = '2.1.1' + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'http://pypi.python.org/packages/source/v/vsc-base/', + 'http://pypi.python.org/packages/source/e/easybuild-framework/', + 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'vsc-base-2.2.2.tar.gz', + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' -- GitLab From ff52953b05070a498f1ce059ab60b203fc491505 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 18 May 2015 18:44:18 +0200 Subject: [PATCH 1142/1217] use https source_urls in EasyBuild 2.1.1 easyconfig --- easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb index f6127ef3f7..632563276e 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.1.eb @@ -11,10 +11,10 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/v/vsc-base/', - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/v/vsc-base/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ -- GitLab From e079d27c019c59900735ddd457de4576d5f864b4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 18 May 2015 18:59:52 +0200 Subject: [PATCH 1143/1217] consistently use https for PyPI URLs in homepage/source_urls --- ...Cython-0.16-goalf-1.1.0-no-OFED-Python-2.7.3.eb | 2 +- .../Cython-0.16-goolf-1.4.10-Python-2.7.3.eb | 2 +- .../Cython/Cython-0.16-ictce-4.0.6-Python-2.7.3.eb | 2 +- .../Cython-0.16-ictce-4.1.13-Python-2.7.3.eb | 2 +- .../Cython/Cython-0.16-ictce-5.3.0-Python-2.7.3.eb | 2 +- .../Cython-0.19.1-goolf-1.4.10-Python-2.7.3.eb | 2 +- .../Cython-0.19.1-ictce-4.1.13-Python-2.7.3.eb | 2 +- .../Cython-0.19.1-ictce-5.3.0-Python-2.7.3.eb | 2 +- .../Cython-0.19.2-ictce-5.5.0-Python-2.7.6.eb | 2 +- .../easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb | 6 +++--- .../easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb | 8 ++++---- .../easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb | 8 ++++---- .../Greenlet-0.4.2-ictce-5.5.0-Python-2.7.6.eb | 4 ++-- .../Jinja2-2.6-goalf-1.1.0-no-OFED-Python-2.7.3.eb | 2 +- .../Jinja2/Jinja2-2.6-goolf-1.4.10-Python-2.7.3.eb | 2 +- .../Jinja2/Jinja2-2.6-ictce-4.0.6-Python-2.7.3.eb | 2 +- .../Jinja2/Jinja2-2.6-ictce-5.3.0-Python-2.7.3.eb | 2 +- ....4-intel-2015a-Python-2.7.9-gmatteo-20150325.eb | 2 +- .../monty/monty-0.6.4-intel-2015a-Python-2.7.9.eb | 2 +- .../PyYAML/PyYAML-3.11-intel-2015a-Python-2.7.9.eb | 2 +- .../p/Python/Python-2.7.3-cgmpolf-1.1.6.eb | 10 +++++----- .../p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb | 10 +++++----- .../p/Python/Python-2.7.3-cgmvolf-1.2.7.eb | 10 +++++----- .../p/Python/Python-2.7.3-cgoolf-1.1.7.eb | 10 +++++----- .../p/Python/Python-2.7.3-gmpolf-1.4.8.eb | 10 +++++----- .../p/Python/Python-2.7.3-gmvolf-1.7.12.eb | 10 +++++----- .../p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb | 10 +++++----- .../p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb | 10 +++++----- .../p/Python/Python-2.7.3-goolf-1.4.10.eb | 10 +++++----- .../p/Python/Python-2.7.3-goolf-1.5.14.eb | 10 +++++----- .../p/Python/Python-2.7.3-ictce-4.0.6.eb | 10 +++++----- .../p/Python/Python-2.7.3-ictce-4.1.13.eb | 10 +++++----- .../p/Python/Python-2.7.3-ictce-5.2.0.eb | 10 +++++----- .../p/Python/Python-2.7.3-ictce-5.3.0.eb | 10 +++++----- .../p/Python/Python-2.7.3-intel-2015a.eb | 10 +++++----- .../p/Python/Python-2.7.3-iomkl-4.6.13.eb | 10 +++++----- .../p/Python/Python-2.7.3-iqacml-3.7.3.eb | 10 +++++----- .../p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb | 10 +++++----- .../p/Python/Python-2.7.5-goolf-1.4.10.eb | 10 +++++----- .../p/Python/Python-2.7.5-ictce-4.1.13.eb | 10 +++++----- .../p/Python/Python-2.7.5-ictce-5.3.0.eb | 10 +++++----- .../p/Python/Python-2.7.5-ictce-5.5.0.eb | 10 +++++----- .../p/Python/Python-2.7.5-iqacml-3.7.3.eb | 10 +++++----- .../p/Python/Python-2.7.6-goolf-1.4.10.eb | 10 +++++----- .../p/Python/Python-2.7.6-ictce-4.1.13.eb | 10 +++++----- .../p/Python/Python-2.7.6-ictce-5.5.0.eb | 10 +++++----- .../p/Python/Python-2.7.8-foss-2014b.eb | 10 +++++----- .../p/Python/Python-2.7.8-goolf-1.5.14.eb | 14 +++++++------- .../p/Python/Python-2.7.8-ictce-7.1.2.eb | 12 ++++++------ .../p/Python/Python-2.7.8-intel-2014.06.eb | 12 ++++++------ .../p/Python/Python-2.7.8-intel-2014b.eb | 12 ++++++------ .../p/Python/Python-2.7.8-intel-2015a.eb | 12 ++++++------ .../p/Python/Python-2.7.9-CrayGNU-5.1.29.eb | 12 ++++++------ .../p/Python/Python-2.7.9-CrayGNU-5.2.25.eb | 12 ++++++------ .../p/Python/Python-2.7.9-CrayGNU-5.2.40.eb | 12 ++++++------ .../p/Python/Python-2.7.9-foss-2015a.eb | 12 ++++++------ .../p/Python/Python-2.7.9-goolf-1.5.14.eb | 12 ++++++------ .../p/Python/Python-2.7.9-intel-2015a.eb | 12 ++++++------ .../p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb | 6 +++--- .../p/Python/Python-3.2.3-goolf-1.4.10.eb | 6 +++--- .../p/Python/Python-3.2.3-ictce-4.0.6.eb | 6 +++--- .../p/Python/Python-3.2.3-ictce-5.3.0.eb | 6 +++--- .../p/Python/Python-3.3.2-goolf-1.4.10.eb | 6 +++--- .../p/Python/Python-3.3.2-ictce-4.1.13.eb | 6 +++--- .../p/Python/Python-3.3.2-ictce-5.3.0.eb | 6 +++--- .../p/Python/Python-3.4.1-intel-2014b.eb | 12 ++++++------ .../p/Python/Python-3.4.1-intel-2015a.eb | 12 ++++++------ .../p/Python/Python-3.4.3-intel-2015a.eb | 12 ++++++------ .../pandas-0.11.0-goolf-1.4.10-Python-2.7.3.eb | 2 +- .../pandas-0.11.0-ictce-4.1.13-Python-2.7.3.eb | 2 +- .../pandas-0.11.0-ictce-5.3.0-Python-2.7.3.eb | 2 +- .../pandas-0.12.0-ictce-5.5.0-Python-2.7.6.eb | 2 +- .../pandas-0.13.1-ictce-5.5.0-Python-2.7.6.eb | 2 +- .../pandas-0.16.0-intel-2015a-Python-2.7.9.eb | 2 +- ...check-1.0.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb | 6 ++---- .../paycheck-1.0.2-goolf-1.4.10-Python-2.7.3.eb | 6 ++---- .../paycheck-1.0.2-ictce-4.1.13-Python-2.7.3.eb | 6 ++---- .../paycheck-1.0.2-ictce-5.3.0-Python-2.7.3.eb | 7 ++----- .../paycheck-1.0.2-iomkl-4.6.13-Python-2.7.3.eb | 6 ++---- ...13-intel-2015a-Python-2.7.9-gmatteo-20150407.eb | 2 +- .../pymatgen-3.0.13-intel-2015a-Python-2.7.9.eb | 2 +- ...ools-0.6c11-goalf-1.1.0-no-OFED-Python-2.7.3.eb | 4 ++-- .../setuptools-0.6c11-goolf-1.4.10-Python-2.7.3.eb | 4 ++-- .../setuptools-0.6c11-ictce-4.0.6-Python-2.7.3.eb | 4 ++-- .../setuptools-0.6c11-ictce-5.3.0-Python-2.7.3.eb | 5 ++--- .../easyconfigs/s/setuptools/setuptools-1.4.2.eb | 4 ++-- .../stemming-1.0-ictce-5.5.0-Python-2.7.6.eb | 2 +- 113 files changed, 377 insertions(+), 389 deletions(-) diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.16-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/c/Cython/Cython-0.16-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 83aec1d936..01ad882b83 100644 --- a/easybuild/easyconfigs/c/Cython/Cython-0.16-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/c/Cython/Cython-0.16-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = 'Cython' version = '0.16' -homepage = 'http://pypi.python.org/pypi/Cython/' +homepage = 'https://pypi.python.org/pypi/Cython/' description = """The Cython language makes writing C extensions for the Python language as easy as Python itself. Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations.""" diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.16-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/c/Cython/Cython-0.16-goolf-1.4.10-Python-2.7.3.eb index 892d56aaa1..fa53744e7c 100644 --- a/easybuild/easyconfigs/c/Cython/Cython-0.16-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/c/Cython/Cython-0.16-goolf-1.4.10-Python-2.7.3.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = 'Cython' version = '0.16' -homepage = 'http://pypi.python.org/pypi/Cython/' +homepage = 'https://pypi.python.org/pypi/Cython/' description = """The Cython language makes writing C extensions for the Python language as easy as Python itself. Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations.""" diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.16-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/c/Cython/Cython-0.16-ictce-4.0.6-Python-2.7.3.eb index b81a538f5c..33197474ce 100644 --- a/easybuild/easyconfigs/c/Cython/Cython-0.16-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/c/Cython/Cython-0.16-ictce-4.0.6-Python-2.7.3.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = 'Cython' version = '0.16' -homepage = 'http://pypi.python.org/pypi/Cython/' +homepage = 'https://pypi.python.org/pypi/Cython/' description = """The Cython language makes writing C extensions for the Python language as easy as Python itself. Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations.""" diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.16-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/c/Cython/Cython-0.16-ictce-4.1.13-Python-2.7.3.eb index 6e94f41099..5cd50bc1ae 100644 --- a/easybuild/easyconfigs/c/Cython/Cython-0.16-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/c/Cython/Cython-0.16-ictce-4.1.13-Python-2.7.3.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = 'Cython' version = '0.16' -homepage = 'http://pypi.python.org/pypi/Cython/' +homepage = 'https://pypi.python.org/pypi/Cython/' description = """The Cython language makes writing C extensions for the Python language as easy as Python itself. Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations.""" diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.16-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/c/Cython/Cython-0.16-ictce-5.3.0-Python-2.7.3.eb index 5d1302c3c1..f2fb277465 100644 --- a/easybuild/easyconfigs/c/Cython/Cython-0.16-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/c/Cython/Cython-0.16-ictce-5.3.0-Python-2.7.3.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = 'Cython' version = '0.16' -homepage = 'http://pypi.python.org/pypi/Cython/' +homepage = 'https://pypi.python.org/pypi/Cython/' description = """The Cython language makes writing C extensions for the Python language as easy as Python itself. Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations.""" diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.19.1-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/c/Cython/Cython-0.19.1-goolf-1.4.10-Python-2.7.3.eb index ebccd555bb..0e8ac631d0 100644 --- a/easybuild/easyconfigs/c/Cython/Cython-0.19.1-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/c/Cython/Cython-0.19.1-goolf-1.4.10-Python-2.7.3.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = 'Cython' version = '0.19.1' -homepage = 'http://pypi.python.org/pypi/Cython/' +homepage = 'https://pypi.python.org/pypi/Cython/' description = """The Cython language makes writing C extensions for the Python language as easy as Python itself. Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations.""" diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.19.1-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/c/Cython/Cython-0.19.1-ictce-4.1.13-Python-2.7.3.eb index 3c845e9845..37ecdfbd48 100644 --- a/easybuild/easyconfigs/c/Cython/Cython-0.19.1-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/c/Cython/Cython-0.19.1-ictce-4.1.13-Python-2.7.3.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = 'Cython' version = '0.19.1' -homepage = 'http://pypi.python.org/pypi/Cython/' +homepage = 'https://pypi.python.org/pypi/Cython/' description = """The Cython language makes writing C extensions for the Python language as easy as Python itself. Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations.""" diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.19.1-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/c/Cython/Cython-0.19.1-ictce-5.3.0-Python-2.7.3.eb index 544e217059..6ba8ee3375 100644 --- a/easybuild/easyconfigs/c/Cython/Cython-0.19.1-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/c/Cython/Cython-0.19.1-ictce-5.3.0-Python-2.7.3.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = 'Cython' version = '0.19.1' -homepage = 'http://pypi.python.org/pypi/Cython/' +homepage = 'https://pypi.python.org/pypi/Cython/' description = """The Cython language makes writing C extensions for the Python language as easy as Python itself. Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations.""" diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.19.2-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/c/Cython/Cython-0.19.2-ictce-5.5.0-Python-2.7.6.eb index 6d9476ba0f..80955e4cc6 100644 --- a/easybuild/easyconfigs/c/Cython/Cython-0.19.2-ictce-5.5.0-Python-2.7.6.eb +++ b/easybuild/easyconfigs/c/Cython/Cython-0.19.2-ictce-5.5.0-Python-2.7.6.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = 'Cython' version = '0.19.2' -homepage = 'http://pypi.python.org/pypi/Cython/' +homepage = 'https://pypi.python.org/pypi/Cython/' description = """The Cython language makes writing C extensions for the Python language as easy as Python itself. Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations.""" diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb index 375a69f41e..6a13fbccbd 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.0.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb index ceb0952d37..1fc508215c 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.1.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb index 335d94e6fb..aefe4f3461 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.0.2.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb index 22d8fd70bd..aec17460aa 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.1.0.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb index 99d04a46aa..12381b6467 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.10.0.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb index e4ebd91d1b..a8ef6b164a 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.0.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb index 798cd20488..d2df7f1988 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.11.1.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb index b7092a63e9..345d210d28 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.0.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb index f8cd7d18f2..97720876b9 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.12.1.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb index 1b3cf50b1a..0b5ba14c24 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.13.0.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb index 8ceec790c8..0176f2b558 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.14.0.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb index cfc44c499c..3ae286c658 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.0.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb index 0f2a68be4b..b4fb5e015c 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.1.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb index d44b604d27..9025d6b24b 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.15.2.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb index 248cce692e..2ac7d84426 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.0.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb index 83ed95495c..a7a958a3ca 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.1.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb index 8f07608f03..26fbe953cd 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.16.2.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb index 8d013d1941..84e658abed 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.2.0.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb index 4a22f26fd3..62ec508192 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.3.0.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb index a94a92c657..f56094b5c0 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.4.0.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb index 07838d8020..df9a262ab2 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.5.0.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb index fd30e9820c..9082a71a46 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.6.0.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb index 39be41a74e..a2164fa02d 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.7.0.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb index 1fe6136b55..8fa4a0a750 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.0.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb index 629ec16acb..1774b8976c 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.1.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb index 15551872f9..d990801ac2 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.8.2.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb index 4047b50760..97801124aa 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-1.9.0.eb @@ -11,9 +11,9 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb index 2528629319..81d586f625 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.0.0.eb @@ -11,10 +11,10 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/v/vsc-base/', - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/v/vsc-base/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb index b11b8ff6c1..cb8c19e606 100644 --- a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.1.0.eb @@ -11,10 +11,10 @@ description = """EasyBuild is a software build and installation framework toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = [ - 'http://pypi.python.org/packages/source/v/vsc-base/', - 'http://pypi.python.org/packages/source/e/easybuild-framework/', - 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', - 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/', + 'https://pypi.python.org/packages/source/v/vsc-base/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', ] # order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) sources = [ diff --git a/easybuild/easyconfigs/g/Greenlet/Greenlet-0.4.2-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/g/Greenlet/Greenlet-0.4.2-ictce-5.5.0-Python-2.7.6.eb index 757c5d4553..4d3d248af6 100644 --- a/easybuild/easyconfigs/g/Greenlet/Greenlet-0.4.2-ictce-5.5.0-Python-2.7.6.eb +++ b/easybuild/easyconfigs/g/Greenlet/Greenlet-0.4.2-ictce-5.5.0-Python-2.7.6.eb @@ -13,8 +13,8 @@ scheduling; coroutines, in other words. This is useful when you want to control toolchain = {'name': 'ictce', 'version': '5.5.0'} -source_urls = ['http://pypi.python.org/packages/source/g/greenlet/'] -sources = ['%s-%s.zip' % (name.lower(), version)] +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_ZIP] python = "Python" pythonversion = '2.7.6' diff --git a/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-goalf-1.1.0-no-OFED-Python-2.7.3.eb index f06323716c..46c4f977e8 100644 --- a/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = "Jinja2" version = "2.6" -homepage = "http://pypi.python.org/pypi/Jinja2" +homepage = "https://pypi.python.org/pypi/Jinja2" description = """Jinja2 is a template engine written in pure Python. It provides a Django inspired non-XML syntax but supports inline expressions and an optional sandboxed environment.""" diff --git a/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-goolf-1.4.10-Python-2.7.3.eb index 88fdc36fa5..e37ffbc4e2 100644 --- a/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-goolf-1.4.10-Python-2.7.3.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = "Jinja2" version = "2.6" -homepage = "http://pypi.python.org/pypi/Jinja2" +homepage = "https://pypi.python.org/pypi/Jinja2" description = """Jinja2 is a template engine written in pure Python. It provides a Django inspired non-XML syntax but supports inline expressions and an optional sandboxed environment.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} diff --git a/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-ictce-4.0.6-Python-2.7.3.eb index 4707146708..191856a900 100644 --- a/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-ictce-4.0.6-Python-2.7.3.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = "Jinja2" version = "2.6" -homepage = "http://pypi.python.org/pypi/Jinja2" +homepage = "https://pypi.python.org/pypi/Jinja2" description = """Jinja2 is a template engine written in pure Python. It provides a Django inspired non-XML syntax but supports inline expressions and an optional sandboxed environment.""" diff --git a/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-ictce-5.3.0-Python-2.7.3.eb index a801441c8b..9711dba080 100644 --- a/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-ictce-5.3.0-Python-2.7.3.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = "Jinja2" version = "2.6" -homepage = "http://pypi.python.org/pypi/Jinja2" +homepage = "https://pypi.python.org/pypi/Jinja2" description = """Jinja2 is a template engine written in pure Python. It provides a Django inspired non-XML syntax but supports inline expressions and an optional sandboxed environment.""" diff --git a/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9-gmatteo-20150325.eb b/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9-gmatteo-20150325.eb index 1dfd105d74..d4224bd978 100644 --- a/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9-gmatteo-20150325.eb +++ b/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9-gmatteo-20150325.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = 'monty' version = '0.6.4' -homepage = 'http://pypi.python.org/pypi/monty/' +homepage = 'https://pypi.python.org/pypi/monty/' description = """Monty implements supplementary useful functions for Python that are not part of the standard library. Examples include useful utilities like transparent support for zipped files, useful design patterns such as singleton and cached_class, and many more.""" diff --git a/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9.eb index 7d2b055f0b..58d8cae9ee 100644 --- a/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/m/monty/monty-0.6.4-intel-2015a-Python-2.7.9.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = 'monty' version = '0.6.4' -homepage = 'http://pypi.python.org/pypi/monty/' +homepage = 'https://pypi.python.org/pypi/monty/' description = """Monty implements supplementary useful functions for Python that are not part of the standard library. Examples include useful utilities like transparent support for zipped files, useful design patterns such as singleton and cached_class, and many more.""" diff --git a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.11-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.11-intel-2015a-Python-2.7.9.eb index bd74a7c6d1..580a294eee 100644 --- a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.11-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.11-intel-2015a-Python-2.7.9.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = "PyYAML" version = "3.11" -homepage = "http://pypi.python.org/pypi/PyYAML/" +homepage = "https://pypi.python.org/pypi/PyYAML/" description = """PyYAML is a YAML parser and emitter for the Python programming language.""" toolchain = {'name': 'intel', 'version': '2015a'} diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb index 5625804833..8bf00ee94a 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -64,7 +64,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb index eea5ccfa5e..2ade7ad4f1 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -46,7 +46,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -62,7 +62,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb index a6794c06c9..a73fef035d 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -64,7 +64,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb index dc891b7530..2af2f0c181 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -46,7 +46,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -62,7 +62,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb index 51cfbe4606..0218dcafbd 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -64,7 +64,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb index 311b197edf..342b19c101 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -64,7 +64,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb index 80c8900b94..b883b3a7a7 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -64,7 +64,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb index f847189fab..53fb8ff292 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -64,7 +64,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb index b2a76a28d3..c2cc52183e 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -64,7 +64,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb index 077f9d9e7e..994f20889f 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -64,7 +64,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb index 930a85f683..459199e8c5 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb @@ -29,13 +29,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -64,7 +64,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb index f86e562788..3e4b4f03f3 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb @@ -29,13 +29,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -64,7 +64,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb index 401dc6dd76..2e8be6d925 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -46,7 +46,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -62,7 +62,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb index e19d9c8443..c6d6010f0e 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -46,7 +46,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -62,7 +62,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb index 91d0cee83b..2da448273b 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -46,7 +46,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -62,7 +62,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb index 31732a9f47..b7849aec58 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb @@ -29,13 +29,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -64,7 +64,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb index 3dd0016674..c17df2cb09 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb @@ -30,13 +30,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -52,7 +52,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -68,7 +68,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb index 47b8de7acf..9f5cd7d95f 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -46,7 +46,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -62,7 +62,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb index a9868e2f66..a24d0b3e6e 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -64,7 +64,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb index b3e31e4ea3..cee2b8e189 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb @@ -30,13 +30,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -51,7 +51,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -67,7 +67,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb index ec5e6c7a3a..751a483994 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb @@ -30,13 +30,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -49,7 +49,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -65,7 +65,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb index 4625232be8..8b46b16cd3 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb @@ -30,13 +30,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -49,7 +49,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -65,7 +65,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb index 1496901c99..ed13d94285 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb @@ -31,13 +31,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '0.6c11', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -53,7 +53,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -69,7 +69,7 @@ exts_list = [ }), ('dateutil', '2.1', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb index ba61389fd5..8e7a62f6da 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '1.4.2', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.4.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.0', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -64,7 +64,7 @@ exts_list = [ }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb index 575fabb0e6..aaba09ba09 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb @@ -30,13 +30,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '1.4.2', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.4.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.0', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -51,7 +51,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -67,7 +67,7 @@ exts_list = [ }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb index 8b621ebdee..d9f7ad0b77 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb @@ -30,13 +30,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '1.4.2', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.4.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.0', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -51,7 +51,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -67,7 +67,7 @@ exts_list = [ }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '0.9.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb index 8ef1b28d6b..6e042b928d 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '5.4.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.5.6', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.3', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,7 +48,7 @@ exts_list = [ 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -64,7 +64,7 @@ exts_list = [ }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.1', { 'source_urls': ['https://deap.googlecode.com/files/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb index 2dd2282def..09dc45c1e6 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb @@ -30,13 +30,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '5.4.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.5.6', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.3', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,16 +48,16 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], }), ('six', '1.7.3', { - 'source_urls': ['http://pypi.python.org/packages/source/s/six/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], }), ('mpi4py', '1.3.1', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -70,7 +70,7 @@ exts_list = [ }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.1', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb index 478804a887..383b7d978b 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb @@ -34,13 +34,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # Version updated 08/JULY/2014 exts_list = [ ('setuptools', '5.4.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.5.6', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.3', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -52,13 +52,13 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -74,7 +74,7 @@ exts_list = [ }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.1', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014.06.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014.06.eb index 54d5edce60..18aa12a4b8 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014.06.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014.06.eb @@ -31,13 +31,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # Version updated 08/JULY/2014 exts_list = [ ('setuptools', '5.4.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.5.6', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.3', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -49,13 +49,13 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -71,7 +71,7 @@ exts_list = [ }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.1', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb index 65ec137785..787f5ecab1 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb @@ -31,13 +31,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # Version updated 08/JULY/2014 exts_list = [ ('setuptools', '5.4.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.5.6', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.3', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -49,13 +49,13 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -71,7 +71,7 @@ exts_list = [ }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.1', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb index ad901ece9f..16a9eea25f 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb @@ -30,13 +30,13 @@ dependencies = [ # Version updated 08/JULY/2014 exts_list = [ ('setuptools', '5.4.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.5.6', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.3', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,13 +48,13 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -70,7 +70,7 @@ exts_list = [ }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.1', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29.eb index 4ef1c682d1..fdb44db0d0 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29.eb @@ -31,13 +31,13 @@ buildopts = 'LINKCC="$CC -dynamic"' # package versions updated Jan 19th 2015 exts_list = [ ('setuptools', '11.3.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '6.0.6', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.4', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -49,13 +49,13 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -71,7 +71,7 @@ exts_list = [ }), ('dateutil', '2.4.0', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.1', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25.eb index adcd0caa18..bb0be0ac85 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25.eb @@ -31,13 +31,13 @@ buildopts = 'LINKCC="$CC -dynamic"' # package versions updated Jan 19th 2015 exts_list = [ ('setuptools', '11.3.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '6.0.6', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.4', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -49,13 +49,13 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -71,7 +71,7 @@ exts_list = [ }), ('dateutil', '2.4.0', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.1', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40.eb index deac7ecaca..3950c920d4 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40.eb @@ -31,13 +31,13 @@ buildopts = 'LINKCC="$CC -dynamic"' # package versions updated Jan 19th 2015 exts_list = [ ('setuptools', '11.3.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '6.0.6', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.4', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -49,13 +49,13 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -71,7 +71,7 @@ exts_list = [ }), ('dateutil', '2.4.0', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.1', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb index d228f95a16..3273aa0399 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb @@ -30,13 +30,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # package versions updated Jan 19th 2015 exts_list = [ ('setuptools', '11.3.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '6.0.6', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.4', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -45,13 +45,13 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -70,7 +70,7 @@ exts_list = [ }), ('dateutil', '2.4.0', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.1', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb index e667c4f618..9a1f9af5fc 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb @@ -30,13 +30,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # package versions updated Jan 19th 2015 exts_list = [ ('setuptools', '11.3.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '6.0.6', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.4', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -45,13 +45,13 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -70,7 +70,7 @@ exts_list = [ }), ('dateutil', '2.4.0', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.1', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb index 06dcabeb70..95f4d38205 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb @@ -30,13 +30,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # package versions updated Jan 19th 2015 exts_list = [ ('setuptools', '11.3.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '6.0.6', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.4', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,13 +48,13 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -73,7 +73,7 @@ exts_list = [ }), ('dateutil', '2.4.0', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.1', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb index ff366c2d52..033d183105 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb @@ -27,14 +27,14 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('distribute', '0.6.26', { - 'source_urls': ['http://pypi.python.org/packages/source/d/distribute'], + 'source_urls': ['https://pypi.python.org/packages/source/d/distribute'], 'modulename': 'setuptools', }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb index 1a46862919..c928dc3ca3 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb @@ -27,14 +27,14 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('distribute', '0.6.26', { - 'source_urls': ['http://pypi.python.org/packages/source/d/distribute'], + 'source_urls': ['https://pypi.python.org/packages/source/d/distribute'], 'modulename': 'setuptools', }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb index bfaa166f08..f523509a1d 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb @@ -29,14 +29,14 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('distribute', '0.6.26', { - 'source_urls': ['http://pypi.python.org/packages/source/d/distribute'], + 'source_urls': ['https://pypi.python.org/packages/source/d/distribute'], 'modulename': 'setuptools', }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb index 92a41bf7e7..a47ee809f5 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb @@ -27,14 +27,14 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('distribute', '0.6.26', { - 'source_urls': ['http://pypi.python.org/packages/source/d/distribute'], + 'source_urls': ['https://pypi.python.org/packages/source/d/distribute'], 'modulename': 'setuptools', }), ('pip', '1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.1.2', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], diff --git a/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb index c462546fe3..f23e383d17 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb @@ -27,13 +27,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '1.1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools'], }), ('pip', '1.4.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.0', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], diff --git a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb index 51dd82cdf9..28d140c742 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb @@ -29,13 +29,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '1.1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools'], }), ('pip', '1.4.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.0', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], diff --git a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb index f1f4f3af6b..a66a2c142a 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb @@ -29,13 +29,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # order is important! exts_list = [ ('setuptools', '1.1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools'], }), ('pip', '1.4.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.0', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb index b64218f00f..07f5694321 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb @@ -31,13 +31,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # Version updated 08/JULY/2014 exts_list = [ ('setuptools', '5.4.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.5.6', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.3', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -49,13 +49,13 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -73,7 +73,7 @@ exts_list = [ }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.1', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb index 5769376b00..ba75d726f9 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb @@ -31,13 +31,13 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # Version updated 08/JULY/2014 exts_list = [ ('setuptools', '5.4.1', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '1.5.6', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.3', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -49,13 +49,13 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -73,7 +73,7 @@ exts_list = [ }), ('dateutil', '2.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.1', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb index 3265a5bd15..c5e5b4ddcb 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb @@ -30,13 +30,13 @@ osdependencies = [('openssl-devel', 'libssl-dev')] exts_filter = ('PYTHONPATH="%(installdir)s:$PYTHONPATH python -c "import %(ext_name)s"', '') exts_list = [ ('setuptools', '15.2', { - 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), ('pip', '6.1.1', { - 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), ('nose', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], @@ -48,13 +48,13 @@ exts_list = [ 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], }), ('blist', '1.3.6', { - 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], }), ('mpi4py', '1.3.1', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { - 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], }), ('argparse', '1.3.0', { 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], @@ -73,7 +73,7 @@ exts_list = [ }), ('dateutil', '2.4.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', - 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), ('deap', '1.0.2', { 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', diff --git a/easybuild/easyconfigs/p/pandas/pandas-0.11.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/p/pandas/pandas-0.11.0-goolf-1.4.10-Python-2.7.3.eb index 350eeb2738..7d470be431 100644 --- a/easybuild/easyconfigs/p/pandas/pandas-0.11.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/pandas/pandas-0.11.0-goolf-1.4.10-Python-2.7.3.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = "pandas" version = "0.11.0" -homepage = "http://pypi.python.org/pypi/pandas/" +homepage = "https://pypi.python.org/pypi/pandas/" description = """pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming language.""" diff --git a/easybuild/easyconfigs/p/pandas/pandas-0.11.0-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/p/pandas/pandas-0.11.0-ictce-4.1.13-Python-2.7.3.eb index 683efb783b..644c39f1d8 100644 --- a/easybuild/easyconfigs/p/pandas/pandas-0.11.0-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/pandas/pandas-0.11.0-ictce-4.1.13-Python-2.7.3.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = "pandas" version = "0.11.0" -homepage = "http://pypi.python.org/pypi/pandas/" +homepage = "https://pypi.python.org/pypi/pandas/" description = """pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming language.""" diff --git a/easybuild/easyconfigs/p/pandas/pandas-0.11.0-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/p/pandas/pandas-0.11.0-ictce-5.3.0-Python-2.7.3.eb index 9d8a5aeb67..236486c7f6 100644 --- a/easybuild/easyconfigs/p/pandas/pandas-0.11.0-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/pandas/pandas-0.11.0-ictce-5.3.0-Python-2.7.3.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = "pandas" version = "0.11.0" -homepage = "http://pypi.python.org/pypi/pandas/" +homepage = "https://pypi.python.org/pypi/pandas/" description = """pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming language.""" diff --git a/easybuild/easyconfigs/p/pandas/pandas-0.12.0-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/p/pandas/pandas-0.12.0-ictce-5.5.0-Python-2.7.6.eb index b38ad74c90..934bb24741 100644 --- a/easybuild/easyconfigs/p/pandas/pandas-0.12.0-ictce-5.5.0-Python-2.7.6.eb +++ b/easybuild/easyconfigs/p/pandas/pandas-0.12.0-ictce-5.5.0-Python-2.7.6.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = "pandas" version = "0.12.0" -homepage = "http://pypi.python.org/pypi/pandas/" +homepage = "https://pypi.python.org/pypi/pandas/" description = """pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming language.""" diff --git a/easybuild/easyconfigs/p/pandas/pandas-0.13.1-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/p/pandas/pandas-0.13.1-ictce-5.5.0-Python-2.7.6.eb index f0ae8b6a9f..36528b21fe 100644 --- a/easybuild/easyconfigs/p/pandas/pandas-0.13.1-ictce-5.5.0-Python-2.7.6.eb +++ b/easybuild/easyconfigs/p/pandas/pandas-0.13.1-ictce-5.5.0-Python-2.7.6.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = "pandas" version = "0.13.1" -homepage = "http://pypi.python.org/pypi/pandas/" +homepage = "https://pypi.python.org/pypi/pandas/" description = """pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming language.""" diff --git a/easybuild/easyconfigs/p/pandas/pandas-0.16.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/pandas/pandas-0.16.0-intel-2015a-Python-2.7.9.eb index d8f4627e56..a94b0b1e5d 100644 --- a/easybuild/easyconfigs/p/pandas/pandas-0.16.0-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/pandas/pandas-0.16.0-intel-2015a-Python-2.7.9.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = "pandas" version = "0.16.0" -homepage = "http://pypi.python.org/pypi/pandas/" +homepage = "https://pypi.python.org/pypi/pandas/" description = """pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming language.""" diff --git a/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb index dd8127de7f..05e281d1d7 100644 --- a/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -3,15 +3,13 @@ easyblock = 'PythonPackage' name = 'paycheck' version = '1.0.2' -homepage = 'http://pypi.python.org/pypi/paycheck/' +homepage = 'https://pypi.python.org/pypi/paycheck/' description = """PayCheck is a half-baked implementation of ScalaCheck, which itself is an implementation of QuickCheck for Haskell. PayCheck is useful for defining a specification of what a function should do, rather than testing its results for a given input.""" toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} -source_urls = [ - 'http://pypi.python.org/packages/source/p/paycheck/', - ] +source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] python = 'Python' diff --git a/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-goolf-1.4.10-Python-2.7.3.eb index c1a1ef52b4..67f7bc47b5 100644 --- a/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-goolf-1.4.10-Python-2.7.3.eb @@ -3,14 +3,12 @@ easyblock = 'PythonPackage' name = 'paycheck' version = '1.0.2' -homepage = 'http://pypi.python.org/pypi/paycheck/' +homepage = 'https://pypi.python.org/pypi/paycheck/' description = """PayCheck is a half-baked implementation of ScalaCheck, which itself is an implementation of QuickCheck for Haskell. PayCheck is useful for defining a specification of what a function should do, rather than testing its results for a given input.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} -source_urls = [ - 'http://pypi.python.org/packages/source/p/paycheck/', - ] +source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] python = 'Python' diff --git a/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-ictce-4.1.13-Python-2.7.3.eb index 9d393ee393..0f1fade586 100644 --- a/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-ictce-4.1.13-Python-2.7.3.eb @@ -3,15 +3,13 @@ easyblock = 'PythonPackage' name = 'paycheck' version = '1.0.2' -homepage = 'http://pypi.python.org/pypi/paycheck/' +homepage = 'https://pypi.python.org/pypi/paycheck/' description = """PayCheck is a half-baked implementation of ScalaCheck, which itself is an implementation of QuickCheck for Haskell. PayCheck is useful for defining a specification of what a function should do, rather than testing its results for a given input.""" toolchain = {'name': 'ictce', 'version': '4.1.13'} -source_urls = [ - 'http://pypi.python.org/packages/source/p/paycheck/', - ] +source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] python = 'Python' diff --git a/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-ictce-5.3.0-Python-2.7.3.eb index 295d530de8..5170a4d2bd 100644 --- a/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-ictce-5.3.0-Python-2.7.3.eb @@ -3,16 +3,13 @@ easyblock = 'PythonPackage' name = 'paycheck' version = '1.0.2' -homepage = 'http://pypi.python.org/pypi/paycheck/' +homepage = 'https://pypi.python.org/pypi/paycheck/' description = """PayCheck is a half-baked implementation of ScalaCheck, which itself is an implementation of QuickCheck for Haskell. PayCheck is useful for defining a specification of what a function should do, rather than testing its results for a given input.""" - toolchain = {'name': 'ictce', 'version': '5.3.0'} -source_urls = [ - 'http://pypi.python.org/packages/source/p/paycheck/', - ] +source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] python = 'Python' diff --git a/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-iomkl-4.6.13-Python-2.7.3.eb b/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-iomkl-4.6.13-Python-2.7.3.eb index 66535a0069..f140852405 100644 --- a/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-iomkl-4.6.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/paycheck/paycheck-1.0.2-iomkl-4.6.13-Python-2.7.3.eb @@ -3,15 +3,13 @@ easyblock = 'PythonPackage' name = 'paycheck' version = '1.0.2' -homepage = 'http://pypi.python.org/pypi/paycheck/' +homepage = 'https://pypi.python.org/pypi/paycheck/' description = """PayCheck is a half-baked implementation of ScalaCheck, which itself is an implementation of QuickCheck for Haskell. PayCheck is useful for defining a specification of what a function should do, rather than testing its results for a given input.""" toolchain = {'name': 'iomkl', 'version': '4.6.13'} -source_urls = [ - 'http://pypi.python.org/packages/source/p/paycheck/', - ] +source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] python = 'Python' diff --git a/easybuild/easyconfigs/p/pymatgen/pymatgen-3.0.13-intel-2015a-Python-2.7.9-gmatteo-20150407.eb b/easybuild/easyconfigs/p/pymatgen/pymatgen-3.0.13-intel-2015a-Python-2.7.9-gmatteo-20150407.eb index 8e35e9a845..5534c8acd7 100644 --- a/easybuild/easyconfigs/p/pymatgen/pymatgen-3.0.13-intel-2015a-Python-2.7.9-gmatteo-20150407.eb +++ b/easybuild/easyconfigs/p/pymatgen/pymatgen-3.0.13-intel-2015a-Python-2.7.9-gmatteo-20150407.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = 'pymatgen' version = '3.0.13' -homepage = 'http://pypi.python.org/pypi/pymatgen' +homepage = 'https://pypi.python.org/pypi/pymatgen' description = """Python Materials Genomics is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes.""" diff --git a/easybuild/easyconfigs/p/pymatgen/pymatgen-3.0.13-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/pymatgen/pymatgen-3.0.13-intel-2015a-Python-2.7.9.eb index 73ac37040a..31bebaefdd 100644 --- a/easybuild/easyconfigs/p/pymatgen/pymatgen-3.0.13-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/pymatgen/pymatgen-3.0.13-intel-2015a-Python-2.7.9.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = 'pymatgen' version = '3.0.13' -homepage = 'http://pypi.python.org/pypi/pymatgen' +homepage = 'https://pypi.python.org/pypi/pymatgen' description = """Python Materials Genomics is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes.""" diff --git a/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 5e2b080c59..637462ec29 100644 --- a/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -3,12 +3,12 @@ easyblock = "PythonPackage" name = "setuptools" version = "0.6c11" -homepage = "http://pypi.python.org/pypi/setuptools/" +homepage = "https://pypi.python.org/pypi/setuptools/" description = """Download, build, install, upgrade, and uninstall Python packages -- easily!""" toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} -source_urls = ['http://pypi.python.org/packages/source/s/%s/' % name] +source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] python = "Python" diff --git a/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-goolf-1.4.10-Python-2.7.3.eb index ca5228d480..517404e770 100644 --- a/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-goolf-1.4.10-Python-2.7.3.eb @@ -3,12 +3,12 @@ easyblock = "PythonPackage" name = "setuptools" version = "0.6c11" -homepage = "http://pypi.python.org/pypi/setuptools/" +homepage = "https://pypi.python.org/pypi/setuptools/" description = """Download, build, install, upgrade, and uninstall Python packages -- easily!""" toolchain = {'name': 'goolf', 'version': '1.4.10'} -source_urls = ['http://pypi.python.org/packages/source/s/%s/' % name] +source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] python = "Python" diff --git a/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-ictce-4.0.6-Python-2.7.3.eb index d34f8f5f64..62aa6e2bbc 100644 --- a/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-ictce-4.0.6-Python-2.7.3.eb @@ -3,12 +3,12 @@ easyblock = "PythonPackage" name = "setuptools" version = "0.6c11" -homepage = "http://pypi.python.org/pypi/setuptools/" +homepage = "https://pypi.python.org/pypi/setuptools/" description = """Download, build, install, upgrade, and uninstall Python packages -- easily!""" toolchain = {'name': 'ictce', 'version': '4.0.6'} -source_urls = ['http://pypi.python.org/packages/source/s/%s/' % name] +source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] python = "Python" diff --git a/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-ictce-5.3.0-Python-2.7.3.eb index 612cf670c0..82de605fe3 100644 --- a/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-ictce-5.3.0-Python-2.7.3.eb @@ -3,13 +3,12 @@ easyblock = "PythonPackage" name = "setuptools" version = "0.6c11" -homepage = "http://pypi.python.org/pypi/setuptools/" +homepage = "https://pypi.python.org/pypi/setuptools/" description = """Download, build, install, upgrade, and uninstall Python packages -- easily!""" - toolchain = {'name': 'ictce', 'version': '5.3.0'} -source_urls = ['http://pypi.python.org/packages/source/s/%s/' % name] +source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] python = "Python" diff --git a/easybuild/easyconfigs/s/setuptools/setuptools-1.4.2.eb b/easybuild/easyconfigs/s/setuptools/setuptools-1.4.2.eb index 87db02a9fa..f08e79381b 100644 --- a/easybuild/easyconfigs/s/setuptools/setuptools-1.4.2.eb +++ b/easybuild/easyconfigs/s/setuptools/setuptools-1.4.2.eb @@ -3,12 +3,12 @@ easyblock = "VersionIndependentPythonPackage" name = "setuptools" version = "1.4.2" -homepage = "http://pypi.python.org/pypi/setuptools/" +homepage = "https://pypi.python.org/pypi/setuptools/" description = """Download, build, install, upgrade, and uninstall Python packages -- easily!""" toolchain = {'name': 'dummy', 'version': 'dummy'} -source_urls = ['http://pypi.python.org/packages/source/s/%(name)s/'] +source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/s/stemming/stemming-1.0-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/s/stemming/stemming-1.0-ictce-5.5.0-Python-2.7.6.eb index 04c3e47988..241a1d5fbf 100644 --- a/easybuild/easyconfigs/s/stemming/stemming-1.0-ictce-5.5.0-Python-2.7.6.eb +++ b/easybuild/easyconfigs/s/stemming/stemming-1.0-ictce-5.5.0-Python-2.7.6.eb @@ -3,7 +3,7 @@ easyblock = "PythonPackage" name = "stemming" version = "1.0" -homepage = "http://pypi.python.org/pypi/stemming/" +homepage = "https://pypi.python.org/pypi/stemming/" description = """Python implementations of the Porter, Porter2, Paice-Husk, and Lovins stemming algorithms for English.""" toolchain = {'name': 'ictce', 'version': '5.5.0'} -- GitLab From 86662e26ed3675e7b71af0f4ccb419405765feea Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Mon, 18 May 2015 19:06:22 +0200 Subject: [PATCH 1144/1217] use PIPY_SOURCE as source URL where applicable --- .../c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.3.eb | 4 ++-- .../c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.5.eb | 4 ++-- .../c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb | 4 ++-- .../c/cutadapt/cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb | 4 ++-- .../c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb | 4 ++-- .../c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb | 4 ++-- .../c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb | 4 ++-- .../c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb | 4 ++-- .../c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb | 4 ++-- .../c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb | 4 ++-- .../h/HTSeq/HTSeq-0.5.4p5-goolf-1.4.10-Python-2.7.3.eb | 2 +- .../h/HTSeq/HTSeq-0.5.4p5-ictce-5.3.0-Python-2.7.3.eb | 2 +- .../h/HTSeq/HTSeq-0.5.4p5-ictce-5.5.0-Python-2.7.6.eb | 2 +- .../n/netaddr/netaddr-0.7.10-ictce-5.5.0-Python-2.7.6.eb | 2 +- 14 files changed, 24 insertions(+), 24 deletions(-) diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.3.eb index 77441b5881..c519419dcf 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.3.eb @@ -17,8 +17,8 @@ description = """ cutadapt removes adapter sequences toolchain = {'name': 'goolf', 'version': '1.4.10'} -source_urls = ['http://cutadapt.googlecode.com/files/'] -sources = ['%(namelower)s-%(version)s.tar.gz'] +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] python = 'Python' pyver = '2.7.3' diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.5.eb index e788568341..f278de669b 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.5.eb @@ -17,8 +17,8 @@ description = """ cutadapt removes adapter sequences toolchain = {'name': 'goolf', 'version': '1.4.10'} -source_urls = ['http://cutadapt.googlecode.com/files/'] -sources = ['%(namelower)s-%(version)s.tar.gz'] +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] python = 'Python' pyver = '2.7.5' diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb index cf67752ee4..a308b21130 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb @@ -15,8 +15,8 @@ description = """ cutadapt removes adapter sequences from high-throughput sequen toolchain = {'name': 'foss', 'version': '2014b'} -source_urls = ['https://github.com/marcelm/cutadapt/archive/'] -sources = ['v%(version)s.tar.gz'] +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] python = 'Python' pyver = '2.7.8' diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb index 3a32415096..a4f5169761 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-goolf-1.4.10-Python-2.7.5.eb @@ -17,8 +17,8 @@ description = """ cutadapt removes adapter sequences toolchain = {'name': 'goolf', 'version': '1.4.10'} -source_urls = ['https://github.com/marcelm/cutadapt/archive/'] -sources = ['v%(version)s.tar.gz'] +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] python = 'Python' pyver = '2.7.5' diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb index f9435f3efa..3303167a21 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb @@ -15,8 +15,8 @@ description = """ cutadapt removes adapter sequences from high-throughput sequen toolchain = {'name': 'foss', 'version': '2014b'} -source_urls = ['https://github.com/marcelm/cutadapt/archive/'] -sources = ['v%(version)s.tar.gz'] +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] python = 'Python' pyver = '2.7.8' diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb index 8a431e4a45..dbc8a13634 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb @@ -12,8 +12,8 @@ description = """ cutadapt removes adapter sequences toolchain = {'name': 'intel', 'version': '2014b'} -source_urls = ['https://pypi.python.org/packages/source/c/cutadapt/'] -sources = ['%(namelower)s-%(version)s.tar.gz'] +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] python = 'Python' pyver = '2.7.8' diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb index b165a51c0c..83a8d8a50d 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb @@ -15,8 +15,8 @@ description = """ cutadapt removes adapter sequences from high-throughput sequen toolchain = {'name': 'foss', 'version': '2014b'} -source_urls = ['https://github.com/marcelm/cutadapt/archive/'] -sources = ['v%(version)s.tar.gz'] +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] python = 'Python' pyver = '2.7.8' diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb index fbe7a035d3..f879b0939f 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb @@ -15,8 +15,8 @@ description = """ cutadapt removes adapter sequences from high-throughput sequen toolchain = {'name': 'foss', 'version': '2014b'} -source_urls = ['https://github.com/marcelm/cutadapt/archive/'] -sources = ['v%(version)s.tar.gz'] +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] python = 'Python' pyver = '2.7.8' diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb index a5093a2f21..60048badc4 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb @@ -15,8 +15,8 @@ description = """ cutadapt removes adapter sequences from high-throughput sequen toolchain = {'name': 'foss', 'version': '2014b'} -source_urls = ['https://github.com/marcelm/cutadapt/archive/'] -sources = ['v%(version)s.tar.gz'] +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] python = 'Python' pyver = '2.7.8' diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb index 737e7e93bb..a69f7bc2f8 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb @@ -15,8 +15,8 @@ description = """ cutadapt removes adapter sequences from high-throughput sequen toolchain = {'name': 'intel', 'version': '2015a'} -source_urls = ['https://github.com/marcelm/cutadapt/archive/'] -sources = ['v%(version)s.tar.gz'] +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] python = 'Python' pyver = '2.7.9' diff --git a/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-goolf-1.4.10-Python-2.7.3.eb index 467ed7ee6d..e1391aa56b 100644 --- a/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-goolf-1.4.10-Python-2.7.3.eb @@ -8,7 +8,7 @@ description = """A framework to process and analyze data from high-throughput se toolchain = {'name': 'goolf', 'version': '1.4.10'} -source_urls = ['https://pypi.python.org/packages/source/H/HTSeq/'] +source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] python = 'Python' diff --git a/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-ictce-5.3.0-Python-2.7.3.eb index d593001ecd..285c21b3f7 100644 --- a/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-ictce-5.3.0-Python-2.7.3.eb @@ -8,7 +8,7 @@ description = """A framework to process and analyze data from high-throughput se toolchain = {'name': 'ictce', 'version': '5.3.0'} -source_urls = ['https://pypi.python.org/packages/source/H/HTSeq/'] +source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] python = 'Python' diff --git a/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-ictce-5.5.0-Python-2.7.6.eb index 478d636658..411df518d3 100644 --- a/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-ictce-5.5.0-Python-2.7.6.eb +++ b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.5.4p5-ictce-5.5.0-Python-2.7.6.eb @@ -8,7 +8,7 @@ description = """A framework to process and analyze data from high-throughput se toolchain = {'name': 'ictce', 'version': '5.5.0'} -source_urls = ['https://pypi.python.org/packages/source/H/HTSeq/'] +source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] python = 'Python' diff --git a/easybuild/easyconfigs/n/netaddr/netaddr-0.7.10-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/n/netaddr/netaddr-0.7.10-ictce-5.5.0-Python-2.7.6.eb index 172dead842..8894ccbab9 100644 --- a/easybuild/easyconfigs/n/netaddr/netaddr-0.7.10-ictce-5.5.0-Python-2.7.6.eb +++ b/easybuild/easyconfigs/n/netaddr/netaddr-0.7.10-ictce-5.5.0-Python-2.7.6.eb @@ -8,7 +8,7 @@ description = """Pythonic manipulation of IPv4, IPv6, CIDR, EUI and MAC network toolchain = {'name': 'ictce', 'version': '5.5.0'} -source_urls = ['https://pypi.python.org/packages/source/n/netaddr/'] +source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] python = 'Python' -- GitLab From a6ab388623360535963811b931c41ba15464ea94 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 19 May 2015 09:20:02 +0200 Subject: [PATCH 1145/1217] add easyconfig for binary version of FDS --- .../easyconfigs/f/FDS/FDS-6.0.1-no-OFED.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/f/FDS/FDS-6.0.1-no-OFED.eb diff --git a/easybuild/easyconfigs/f/FDS/FDS-6.0.1-no-OFED.eb b/easybuild/easyconfigs/f/FDS/FDS-6.0.1-no-OFED.eb new file mode 100644 index 0000000000..f0c7225183 --- /dev/null +++ b/easybuild/easyconfigs/f/FDS/FDS-6.0.1-no-OFED.eb @@ -0,0 +1,26 @@ +easyblock = 'Tarball' + +name = 'FDS' +version = '6.0.1' +versionsuffix = '-no-OFED' + +homepage = 'https://code.google.com/p/fds-smv/' +description = """ + Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and + heat transport from fires. +""" +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download .sh from https://bintray.com/nist-fire-research/releases/FDS-SMV/6.0.1/view/files to create tarball +sources = ['FDS_6.0.1-SMV_6.1.5_linux64.tar.gz'] + +dependencies = [('OpenMPI', '1.6.5-GCC-4.8.2-no-OFED')] + +skipsteps= ['configure', 'build'] + +sanity_check_paths = { + 'files': ['bin/fds', 'bin/fds_mpi'], + 'dirs': [], +} + +moduleclass = 'phys' -- GitLab From c52300e394b9cf0b7c924631155921ab7ee278f3 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 19 May 2015 09:41:41 +0200 Subject: [PATCH 1146/1217] rename FDS patch file + style cleanup --- .../easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb | 9 ++++----- .../easyconfigs/f/FDS/FDS-r18915-ictce-5.5.0.eb | 12 ++++++------ ...{FDS_makefile.patch => FDS-r18915_makefile.patch} | 0 3 files changed, 10 insertions(+), 11 deletions(-) rename easybuild/easyconfigs/f/FDS/{FDS_makefile.patch => FDS-r18915_makefile.patch} (100%) diff --git a/easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb index d49cfa69e6..5747ab3226 100644 --- a/easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb @@ -2,20 +2,19 @@ name = 'FDS' version = 'r18915' homepage = 'https://code.google.com/p/fds-smv/' -description = """ - Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and - heat transport from fires. -""" +description = """Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, + with an emphasis on smoke and heat transport from fires.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'pic': True, 'usempi': True} sources = [SOURCE_TAR_GZ] +patches = ['FDS-%(version)s_makefile.patch'] + # just run make in the install dir skipsteps = ['configure', 'install'] buildininstalldir = True -patches = ['FDS_makefile.patch'] modextrapaths = {'PATH': 'FDS_Source'} sanity_check_paths = { diff --git a/easybuild/easyconfigs/f/FDS/FDS-r18915-ictce-5.5.0.eb b/easybuild/easyconfigs/f/FDS/FDS-r18915-ictce-5.5.0.eb index ef3f6f0041..9710fba50f 100644 --- a/easybuild/easyconfigs/f/FDS/FDS-r18915-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/f/FDS/FDS-r18915-ictce-5.5.0.eb @@ -2,19 +2,19 @@ name = 'FDS' version = 'r18915' homepage = 'https://code.google.com/p/fds-smv/' -description = """ - Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and - heat transport from fires. -""" -toolchain = {'name': 'ictce', 'version': '5.5.0'} # tweaked by EasyBuild (was: {'name': 'goolf', 'version': '1.4.10'}) +description = """Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, + with an emphasis on smoke and heat transport from fires.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} toolchainopts = {'pic': True, 'usempi': True} sources = [SOURCE_TAR_GZ] +patches = ['FDS-%(version)s_makefile.patch'] + # just run make in the install dir skipsteps = ['configure', 'install'] buildininstalldir = True -patches = ['FDS_makefile.patch'] modextrapaths = {'PATH': 'FDS_Source'} sanity_check_paths = { diff --git a/easybuild/easyconfigs/f/FDS/FDS_makefile.patch b/easybuild/easyconfigs/f/FDS/FDS-r18915_makefile.patch similarity index 100% rename from easybuild/easyconfigs/f/FDS/FDS_makefile.patch rename to easybuild/easyconfigs/f/FDS/FDS-r18915_makefile.patch -- GitLab From 41b4371583caa928a9519cdaa614e4970ad46880 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 19 May 2015 09:44:50 +0200 Subject: [PATCH 1147/1217] add missing 'easyblock' line --- easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb | 2 ++ easybuild/easyconfigs/f/FDS/FDS-r18915-ictce-5.5.0.eb | 2 ++ 2 files changed, 4 insertions(+) diff --git a/easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb index 5747ab3226..e84a122aeb 100644 --- a/easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FDS/FDS-r18915-goolf-1.4.10.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FDS' version = 'r18915' diff --git a/easybuild/easyconfigs/f/FDS/FDS-r18915-ictce-5.5.0.eb b/easybuild/easyconfigs/f/FDS/FDS-r18915-ictce-5.5.0.eb index 9710fba50f..78ff82e688 100644 --- a/easybuild/easyconfigs/f/FDS/FDS-r18915-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/f/FDS/FDS-r18915-ictce-5.5.0.eb @@ -1,3 +1,5 @@ +easyblock = 'ConfigureMake' + name = 'FDS' version = 'r18915' -- GitLab From b2a2986eb682f37726eee7a591584422cdabc52b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 19 May 2015 15:52:28 +0200 Subject: [PATCH 1148/1217] {vis}[intel/2015a] frealign 9.09 --- .../frealign-9.09-intel-2015a-avx-mp.eb | 31 +++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 easybuild/easyconfigs/f/frealign/frealign-9.09-intel-2015a-avx-mp.eb diff --git a/easybuild/easyconfigs/f/frealign/frealign-9.09-intel-2015a-avx-mp.eb b/easybuild/easyconfigs/f/frealign/frealign-9.09-intel-2015a-avx-mp.eb new file mode 100644 index 0000000000..a6b21fbfff --- /dev/null +++ b/easybuild/easyconfigs/f/frealign/frealign-9.09-intel-2015a-avx-mp.eb @@ -0,0 +1,31 @@ +easyblock = 'MakeCp' + +name = 'frealign' +version = '9.09' +versionsuffix = '-avx-mp' + +homepage = 'http://grigoriefflab.janelia.org/frealign' +description = """Frealign is a program for high-resolution refinement of 3D reconstructions from cryo-EM images of + single particles.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://grigoriefflab.janelia.org/sites/default/files/'] +sources = ['frealign_v%(version)s_150422.tar.gz'] + +start_dir = 'src' + +parallel = 1 + +# clean all included binaries first +prebuildopts = "rm ../bin/* && " +buildopts = "-f Makefile_linux_avx_intel_mp_static" + +files_to_copy = ['bin'] + +sanity_check_paths = { + 'files': ['bin/resample_mp.exe', 'bin/merge_3d_mp.exe', 'bin/frealign_v%(version_major)s_mp.exe'], + 'dirs': [], +} + +moduleclass = 'vis' -- GitLab From 53337ee42f174c2358b16c68a3caf3022e462e1b Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 09:12:01 +0200 Subject: [PATCH 1149/1217] rework foss/2015.01 by introducing GNU subtoolchain --- .../Autoconf/Autoconf-2.69-GNU-4.9.2-2.25.eb | 26 ++++++++++ .../Automake/Automake-1.15-GNU-4.9.2-2.25.eb | 33 ++++++++++++ ... binutils-2.25-GCC-4.9.2-binutils-2.25.eb} | 4 +- .../f/FFTW/FFTW-3.3.4-gompi-1.9.0.eb | 34 ------------- easybuild/easyconfigs/f/foss/foss-2015.01.eb | 14 ++--- .../g/GCC/GCC-4.9.2-binutils-2.25.eb | 45 ++++++++++++++++ easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb | 2 - easybuild/easyconfigs/g/GNU/GNU-4.9.2-2.25.eb | 20 ++++++++ easybuild/easyconfigs/g/gompi/gompi-1.9.0.eb | 23 --------- .../easyconfigs/g/gompi/gompi-2015.01.eb | 12 ++--- easybuild/easyconfigs/g/goolf/goolf-1.9.0.eb | 38 -------------- .../easyconfigs/h/HPL/HPL-2.1-goolf-1.9.0.eb | 18 ------- .../h/hwloc/hwloc-1.10.0-GNU-4.9.2-2.25.eb | 23 +++++++++ .../l/libtool/libtool-2.4.2-GNU-4.9.2-2.25.eb | 15 ++++++ .../m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb | 23 +++++++++ .../numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb | 31 +++++++++++ ...BLAS-0.2.13-GNU-4.9.2-2.25-LAPACK-3.5.0.eb | 51 +++++++++++++++++++ .../o/OpenMPI/OpenMPI-1.8.4-GNU-4.9.2-2.25.eb | 34 +++++++++++++ ...ompi-1.9.0-OpenBLAS-0.2.13-LAPACK-3.5.0.eb | 25 --------- .../zlib-1.2.8-GCC-4.9.2-binutils-2.25.eb | 21 ++++++++ 20 files changed, 337 insertions(+), 155 deletions(-) create mode 100644 easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-4.9.2-2.25.eb create mode 100644 easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.2-2.25.eb rename easybuild/easyconfigs/b/binutils/{binutils-2.25-GCC-4.9.2.eb => binutils-2.25-GCC-4.9.2-binutils-2.25.eb} (85%) delete mode 100644 easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.9.0.eb create mode 100644 easybuild/easyconfigs/g/GCC/GCC-4.9.2-binutils-2.25.eb create mode 100644 easybuild/easyconfigs/g/GNU/GNU-4.9.2-2.25.eb delete mode 100644 easybuild/easyconfigs/g/gompi/gompi-1.9.0.eb delete mode 100644 easybuild/easyconfigs/g/goolf/goolf-1.9.0.eb delete mode 100644 easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.9.0.eb create mode 100644 easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GNU-4.9.2-2.25.eb create mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.2-GNU-4.9.2-2.25.eb create mode 100644 easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb create mode 100644 easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb create mode 100644 easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GNU-4.9.2-2.25-LAPACK-3.5.0.eb create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GNU-4.9.2-2.25.eb delete mode 100644 easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.9.0-OpenBLAS-0.2.13-LAPACK-3.5.0.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2-binutils-2.25.eb diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-4.9.2-2.25.eb new file mode 100644 index 0000000000..b57c1dcc83 --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GNU-4.9.2-2.25.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can adapt the + packages to many kinds of UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template file that lists the + operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", + "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.2-2.25.eb new file mode 100644 index 0000000000..f0e456c431 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GNU-4.9.2-2.25.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb similarity index 85% rename from easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb rename to easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb index f91dda00cd..9fe47929d3 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb @@ -9,11 +9,11 @@ description = "binutils: GNU binary utilities" sources = [SOURCE_TAR_GZ] source_urls = [GNU_SOURCE] -toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchain = {'name': 'GCC', 'version': '4.9.2-binutils-%(version)s'} dependencies = [('zlib', '1.2.8')] -builddependencies = [('binutils', '2.25', '', True)] +builddependencies = [('binutils', version, '', True)] configopts = '--with-sysroot' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.9.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.9.0.eb deleted file mode 100644 index 080b817838..0000000000 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.9.0.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'FFTW' -version = '3.3.4' - -homepage = 'http://www.fftw.org' -description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) - in one or more dimensions, of arbitrary input size, and of both real and complex data.""" - -toolchain = {'name': 'gompi', 'version': '1.9.0'} -toolchainopts = {'optarch': True, 'pic': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [homepage] - -common_configopts = "--enable-threads --enable-openmp --with-pic" - -configopts = [ - common_configopts + " --enable-single --enable-sse2 --enable-mpi", - common_configopts + " --enable-long-double --enable-mpi", - common_configopts + " --enable-quad-precision", - common_configopts + " --enable-sse2 --enable-mpi", # default as last -] - -sanity_check_paths = { - 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + - ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', - '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], - 'dirs': ['lib/pkgconfig'], -} - -moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/foss/foss-2015.01.eb b/easybuild/easyconfigs/f/foss/foss-2015.01.eb index 9c0f07775d..47df95ad70 100644 --- a/easybuild/easyconfigs/f/foss/foss-2015.01.eb +++ b/easybuild/easyconfigs/f/foss/foss-2015.01.eb @@ -9,9 +9,9 @@ description = """GNU Compiler Collection (GCC) based compiler toolchain, includi toolchain = {'name': 'dummy', 'version': 'dummy'} -comp_name = 'GCC' -comp_version = '4.9.2' -comp = (comp_name, comp_version) +gccver = '4.9.2' +binutilsver = '2.25' +tcver = '%s-binutils-%s' % (gccver, binutilsver) blaslib = 'OpenBLAS' blasver = '0.2.13' @@ -28,10 +28,10 @@ comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) # because of toolchain preperation functions # For binutils, stick to http://wiki.osdev.org/Cross-Compiler_Successful_Builds dependencies = [ - comp, - ('binutils', '2.25', '', comp), - ('OpenMPI', '1.8.4', '', comp), - (blaslib, blasver, blassuff, comp), + ('GCC', gccver, '-binutils-%s' % binutilsver), + ('binutils', binutilsver, '', ('GCC', tcver)), + ('OpenMPI', '1.8.4', '', ('GNU', '%s-%s' % (gccver, binutilsver))), + (blaslib, blasver, blassuff, ('GNU', '%s-%s' % (gccver, binutilsver))), ('FFTW', '3.3.4', '', comp_mpi_tc), ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), ] diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2-binutils-2.25.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-binutils-2.25.eb new file mode 100644 index 0000000000..4985b9228e --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2-binutils-2.25.eb @@ -0,0 +1,45 @@ +name = "GCC" +version = '4.9.2' + +binutilsver = '2.25' +versionsuffix = '-binutils-%s' % binutilsver + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': ''} + +mpfr_version = '3.1.2' + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official +] +sources = [ + SOURCELOWER_TAR_BZ2, + 'gmp-6.0.0a.tar.bz2', + 'mpfr-%s.tar.gz' % mpfr_version, + 'mpc-1.0.2.tar.gz', +] + +builddependencies = [('binutils', binutilsver)] + +patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] + +checksums = [ + '4df8ee253b7f3863ad0b86359cd39c43', # gcc-4.9.2.tar.bz2 + 'b7ff2d88cae7f8085bd5006096eed470', # gmp-6.0.0a.tar.bz2 + '181aa7bb0e452c409f2788a4a7f38476', # mpfr-3.1.2.tar.gz + '68fadff3358fb3e7976c7a398a0af4c3', # mpc-1.0.2.tar.gz + '21958aaf3d242e51b2f45cefcb9560d9', # mpfr-3.1.2-allpatches-20140630.patch +] + +languages = ['c', 'c++', 'fortran'] + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb index dd71a77ce5..ebf339e6b0 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb @@ -22,8 +22,6 @@ sources = [ 'mpc-1.0.2.tar.gz', ] -builddependencies = [('binutils', '2.25')] - patches = [('mpfr-%s-allpatches-20140630.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] checksums = [ diff --git a/easybuild/easyconfigs/g/GNU/GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/g/GNU/GNU-4.9.2-2.25.eb new file mode 100644 index 0000000000..c1b036b3c1 --- /dev/null +++ b/easybuild/easyconfigs/g/GNU/GNU-4.9.2-2.25.eb @@ -0,0 +1,20 @@ +easyblock = 'Toolchain' + +name = 'GNU' +gccver = '4.9.2' +binutilsver = '2.25' +version = '%s-%s' % (gccver, binutilsver) + +homepage = 'http://gnu.org' +description = "Compiler-only toolchain with GCC and binutils." + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + # GCC built on top of (dummy-built) binutils + ('GCC', gccver, '-binutils-%s' % binutilsver), + # binutils built on top of GCC, which was built on top of (dummy-built) binutils + ('binutils', binutilsver, '', ('GCC', '%s-binutils-%s' % (gccver, binutilsver))), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/gompi/gompi-1.9.0.eb b/easybuild/easyconfigs/g/gompi/gompi-1.9.0.eb deleted file mode 100644 index f8cc89cff5..0000000000 --- a/easybuild/easyconfigs/g/gompi/gompi-1.9.0.eb +++ /dev/null @@ -1,23 +0,0 @@ -easyblock = "Toolchain" - -name = 'gompi' -version = '1.9.0' - -homepage = '(none)' -description = """GNU Compiler Collection (GCC) based compiler toolchain, - including OpenMPI for MPI support.""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -compname = 'GCC' -compver = '4.9.2' -comp = (compname, compver) - -# compiler toolchain dependencies -dependencies = [ - comp, - ('binutils', '2.25', '', comp), - ('OpenMPI', '1.8.4', '', comp), -] - -moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/gompi/gompi-2015.01.eb b/easybuild/easyconfigs/g/gompi/gompi-2015.01.eb index 1dd2af3813..61953c785a 100644 --- a/easybuild/easyconfigs/g/gompi/gompi-2015.01.eb +++ b/easybuild/easyconfigs/g/gompi/gompi-2015.01.eb @@ -9,15 +9,15 @@ description = """GNU Compiler Collection (GCC) based compiler toolchain, toolchain = {'name': 'dummy', 'version': 'dummy'} -compname = 'GCC' -compver = '4.9.2' -comp = (compname, compver) +gccver = '4.9.2' +binutilsver = '2.25' +tcver = '%s-binutils-%s' % (gccver, binutilsver) # compiler toolchain dependencies dependencies = [ - comp, - ('binutils', '2.25', '', comp), - ('OpenMPI', '1.8.4', '', comp), + ('GCC', gccver, '-binutils-%s' % binutilsver), + ('binutils', binutilsver, '', ('GCC', tcver)), + ('OpenMPI', '1.8.4', '', ('GNU', '%s-%s' % (gccver, binutilsver))), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/goolf/goolf-1.9.0.eb b/easybuild/easyconfigs/g/goolf/goolf-1.9.0.eb deleted file mode 100644 index feeb6330ff..0000000000 --- a/easybuild/easyconfigs/g/goolf/goolf-1.9.0.eb +++ /dev/null @@ -1,38 +0,0 @@ -easyblock = "Toolchain" - -name = 'goolf' -version = '1.9.0' - -homepage = '(none)' -description = """GNU Compiler Collection (GCC) based compiler toolchain, including - OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -comp_name = 'GCC' -comp_version = '4.9.2' -comp = (comp_name, comp_version) - -blaslib = 'OpenBLAS' -blasver = '0.2.13' -blas = '%s-%s' % (blaslib, blasver) -blassuff = '-LAPACK-3.5.0' - -# toolchain used to build goolf dependencies -comp_mpi_tc_name = 'gompi' -comp_mpi_tc_ver = "%s" % version -comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) - -# compiler toolchain depencies -# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain -# because of toolchain preperation functions -dependencies = [ - comp, - ('binutils', '2.25', '', comp), - ('OpenMPI', '1.8.4', '', comp), - (blaslib, blasver, blassuff, comp), - ('FFTW', '3.3.4', '', comp_mpi_tc), - ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), -] - -moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.9.0.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.9.0.eb deleted file mode 100644 index e9fc6dc2e2..0000000000 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-goolf-1.9.0.eb +++ /dev/null @@ -1,18 +0,0 @@ -name = 'HPL' -version = '2.1' - -homepage = 'http://www.netlib.org/benchmark/hpl/' -description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic - on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the - High Performance Computing Linpack Benchmark.""" - -toolchain = {'name': 'goolf', 'version': '1.9.0'} -toolchainopts = {'optarch': True, 'usempi': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] - -# fix Make dependencies, so parallel build also works -patches = ['HPL_parallel-make.patch'] - -moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GNU-4.9.2-2.25.eb new file mode 100644 index 0000000000..dfcbd3f2c0 --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GNU-4.9.2-2.25.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.10.0' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} + +dependencies = [('numactl', '2.0.10')] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GNU-4.9.2-2.25.eb new file mode 100644 index 0000000000..9897d9bd11 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GNU-4.9.2-2.25.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.2' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb new file mode 100644 index 0000000000..e2764250bf --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GNU-4.9.2-2.25.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb new file mode 100644 index 0000000000..3ada055448 --- /dev/null +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'numactl' +version = '2.0.10' + +checksums = ['682c38305b2596967881f3d77bc3fc9c'] + +homepage = 'http://oss.sgi.com/projects/libnuma/' +description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. + It does this by supplying a NUMA memory policy to the operating system before running your program. + The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" + +toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} + +source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] +sources = [SOURCE_TAR_GZ] + +builddependencies = [ + ('Automake', '1.15'), + ('libtool', '2.4.2'), +] + +preconfigopts = './autogen.sh && ' + + +sanity_check_paths = { + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GNU-4.9.2-2.25-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GNU-4.9.2-2.25-LAPACK-3.5.0.eb new file mode 100644 index 0000000000..1ff75dff8d --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GNU-4.9.2-2.25-LAPACK-3.5.0.eb @@ -0,0 +1,51 @@ +easyblock = 'ConfigureMake' + +name = 'OpenBLAS' +version = '0.2.13' + +lapackver = '3.5.0' +versionsuffix = '-LAPACK-%s' % lapackver + +homepage = 'http://xianyi.github.com/OpenBLAS/' +description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" + +toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} + +lapack_src = 'lapack-%s.tgz' % lapackver +large_src = 'large.tgz' +timing_src = 'timing.tgz' +sources = [ + 'v%(version)s.tar.gz', + lapack_src, + large_src, + timing_src, +] +source_urls = [ + # order matters, trying to download the LAPACK tarball from GitHub causes trouble + "http://www.netlib.org/lapack/", + "http://www.netlib.org/lapack/timing/", + "https://github.com/xianyi/OpenBLAS/archive/", +] + +patches = [ + (lapack_src, '.'), # copy LAPACK tarball to unpacked OpenBLAS dir + (large_src, '.'), + (timing_src, '.'), +] + +skipsteps = ['configure'] + +buildopts = 'BINARY=64 USE_THREAD=1 CC="$CC" FC="$F77" NO_AFFINITY=1' +installopts = "USE_THREAD=1 PREFIX=%(installdir)s" + +# extensive testing can be enabled by uncommenting the line below +#runtest = 'PATH=.:$PATH lapack-timing' + +sanity_check_paths = { + 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', + 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GNU-4.9.2-2.25.eb new file mode 100644 index 0000000000..14daf056ee --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GNU-4.9.2-2.25.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.8.4' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +dependencies = [('hwloc', '1.10.0')] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.9.0-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.9.0-OpenBLAS-0.2.13-LAPACK-3.5.0.eb deleted file mode 100644 index e0aff023b0..0000000000 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.9.0-OpenBLAS-0.2.13-LAPACK-3.5.0.eb +++ /dev/null @@ -1,25 +0,0 @@ -name = 'ScaLAPACK' -version = '2.0.2' - -homepage = 'http://www.netlib.org/scalapack/' -description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines - redesigned for distributed memory MIMD parallel computers.""" - -toolchain = {'name': 'gompi', 'version': '1.9.0'} -toolchainopts = {'pic': True} - -source_urls = [homepage] -sources = [SOURCELOWER_TGZ] - -blaslib = 'OpenBLAS' -blasver = '0.2.13' -blassuff = '-LAPACK-3.5.0' - -versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) - -dependencies = [(blaslib, blasver, blassuff, ('GCC', '4.9.2'))] - -## parallel build tends to fail, so disabling it -parallel = 1 - -moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2-binutils-2.25.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2-binutils-2.25.eb new file mode 100644 index 0000000000..64ff4fbec6 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2-binutils-2.25.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2-binutils-2.25'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 63c37d0acd168b26d30710221f45fc7da541f7cb Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 09:21:03 +0200 Subject: [PATCH 1150/1217] fix ScaLAPACK dep spec --- ...caLAPACK-2.0.2-gompi-2015.01-OpenBLAS-0.2.13-LAPACK-3.5.0.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.01-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.01-OpenBLAS-0.2.13-LAPACK-3.5.0.eb index 962d8049d0..cd879dacd3 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.01-OpenBLAS-0.2.13-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.01-OpenBLAS-0.2.13-LAPACK-3.5.0.eb @@ -17,7 +17,7 @@ blassuff = '-LAPACK-3.5.0' versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) -dependencies = [(blaslib, blasver, blassuff, ('GCC', '4.9.2'))] +dependencies = [(blaslib, blasver, blassuff, ('GNU', '4.9.2-2.25'))] ## parallel build tends to fail, so disabling it parallel = 1 -- GitLab From 1009235604f4daa0eb83b0dd659c66d0f8ffe7d5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 11:06:28 +0200 Subject: [PATCH 1151/1217] add Tk without X11 support --- .../t/Tk/Tk-8.6.4-intel-2015a-no-X11.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a-no-X11.eb diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a-no-X11.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a-no-X11.eb new file mode 100644 index 0000000000..50b6df47b2 --- /dev/null +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a-no-X11.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'Tk' +version = '8.6.4' +versionsuffix = '-no-X11' + +homepage = 'http://www.tcl.tk/' +description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building + a graphical user interface (GUI) in many different programming languages.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +dependencies = [ + ('Tcl', version), + ('libX11', '1.6.3', '-Python-2.7.9'), +] + +configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib --without-x CFLAGS="-I$EBROOTTCL/include"' + +start_dir = 'unix' + +moduleclass = 'vis' -- GitLab From 206c5f6ff26612114751151767a7e9ebc9c2f220 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 11:15:39 +0200 Subject: [PATCH 1152/1217] remove libX11 dep from no-X11 Tk easyconfig --- easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a-no-X11.eb | 1 - 1 file changed, 1 deletion(-) diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a-no-X11.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a-no-X11.eb index 50b6df47b2..39ccca9596 100644 --- a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a-no-X11.eb +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a-no-X11.eb @@ -15,7 +15,6 @@ sources = ['%(namelower)s%(version)s-src.tar.gz'] dependencies = [ ('Tcl', version), - ('libX11', '1.6.3', '-Python-2.7.9'), ] configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib --without-x CFLAGS="-I$EBROOTTCL/include"' -- GitLab From 9f1645c4cc7b5494284c4c8b8b0531a5aa31f168 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 11:33:06 +0200 Subject: [PATCH 1153/1217] use --with-sysroot=/ in binutils easyconfigs --- .../b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb | 3 ++- easybuild/easyconfigs/b/binutils/binutils-2.25.eb | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb index 9fe47929d3..b93783f696 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb @@ -15,7 +15,8 @@ dependencies = [('zlib', '1.2.8')] builddependencies = [('binutils', version, '', True)] -configopts = '--with-sysroot' +# make sure that system libraries are also considered by ld +configopts = '--with-sysroot=/' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25.eb index 9a9d28a75d..dee468601d 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25.eb @@ -17,7 +17,8 @@ builddependencies = [('zlib', '1.2.8')] preconfigopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' prebuildopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' -configopts = '--with-sysroot' +# make sure that system libraries are also considered by ld +configopts = '--with-sysroot=/' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] -- GitLab From becefcb5a6635e5df687e18c59313044ddddd775 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 11:44:22 +0200 Subject: [PATCH 1154/1217] use no-X11 Tk as dep in R-extra easyconfig --- .../R-extra-20150323-intel-2015a-R-3.1.3.eb | 2 +- .../t/Tcl/Tcl-8.6.4-intel-2015a.eb | 25 ------------------- .../easyconfigs/t/Tk/Tk-8.6.4-intel-2015a.eb | 24 ------------------ 3 files changed, 1 insertion(+), 50 deletions(-) delete mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2015a.eb delete mode 100644 easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a.eb diff --git a/easybuild/easyconfigs/r/R-extra/R-extra-20150323-intel-2015a-R-3.1.3.eb b/easybuild/easyconfigs/r/R-extra/R-extra-20150323-intel-2015a-R-3.1.3.eb index 7ec2e95168..6cd16e2bf9 100644 --- a/easybuild/easyconfigs/r/R-extra/R-extra-20150323-intel-2015a-R-3.1.3.eb +++ b/easybuild/easyconfigs/r/R-extra/R-extra-20150323-intel-2015a-R-3.1.3.eb @@ -17,7 +17,7 @@ exts_filter = ("R -q --no-save", "library(%(ext_name)s)") dependencies = [ ('R', rver), ('Tcl', '8.6.4'), - ('Tk', '8.6.4'), + ('Tk', '8.6.4', '-no-X11'), ('cURL', '7.41.0'), ('libxml2', '2.9.2'), ] diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2015a.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2015a.eb deleted file mode 100644 index b2673863fd..0000000000 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2015a.eb +++ /dev/null @@ -1,25 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Tcl' -version = '8.6.4' - -homepage = 'http://www.tcl.tk/' -description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, -suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -source_urls = ["http://prdownloads.sourceforge.net/tcl"] -sources = ['%(namelower)s%(version)s-src.tar.gz'] - -dependencies = [ - ('zlib', '1.2.8'), -] - -configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' - -runtest = 'test' - -start_dir = 'unix' - -moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a.eb deleted file mode 100644 index de684154a7..0000000000 --- a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a.eb +++ /dev/null @@ -1,24 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'Tk' -version = '8.6.4' - -homepage = 'http://www.tcl.tk/' -description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building - a graphical user interface (GUI) in many different programming languages.""" - -toolchain = {'name': 'intel', 'version': '2015a'} - -source_urls = ["http://prdownloads.sourceforge.net/tcl"] -sources = ['%(namelower)s%(version)s-src.tar.gz'] - -dependencies = [ - ('Tcl', version), - ('libX11', '1.6.3', '-Python-2.7.9'), -] - -configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib CFLAGS="-I$EBROOTTCL/include"' - -start_dir = 'unix' - -moduleclass = 'vis' -- GitLab From f0b88162888cec97df7788b437445f0f98efaa82 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 12:00:37 +0200 Subject: [PATCH 1155/1217] readd Tcl 8.6.4 that is required as a dep --- .../t/Tcl/Tcl-8.6.4-intel-2015a.eb | 25 +++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2015a.eb diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2015a.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2015a.eb new file mode 100644 index 0000000000..b2673863fd --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.4' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +dependencies = [ + ('zlib', '1.2.8'), +] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' -- GitLab From ca15317769e216045f32651ab9e9b199fcbf3671 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 14:42:01 +0200 Subject: [PATCH 1156/1217] fix typo --- test/easyconfigs/easyconfigs.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index 838f4a2957..6efa3b178f 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -244,7 +244,7 @@ def template_easyconfig_test(self, spec): # check easyconfig file name expected_fn = '%s-%s.eb' % (ec['name'], det_full_ec_version(ec)) - msg = "Filename '%s' of parsed easconfig matches expected filename '%s'" % (spec, expected_fn) + msg = "Filename '%s' of parsed easyconfig matches expected filename '%s'" % (spec, expected_fn) self.assertEqual(os.path.basename(spec), expected_fn, msg) name, easyblock = fetch_parameters_from_easyconfig(ec.rawtxt, ['name', 'easyblock']) -- GitLab From 6c6c63d9e27c12d2ae6b99f88af11fbd8cf28637 Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Wed, 20 May 2015 13:41:12 +0200 Subject: [PATCH 1157/1217] WIP for R-bundles and devtools. Renaming the file and giving it a fix for the versionsuffix. Updated to reflect boegel's comment. --- ...s-20150520-intel-2015a-R-3.1.3-devtools.eb | 51 +++++++++++++++++++ 1 file changed, 51 insertions(+) create mode 100644 easybuild/easyconfigs/r/R-bundles/R-bundles-20150520-intel-2015a-R-3.1.3-devtools.eb diff --git a/easybuild/easyconfigs/r/R-bundles/R-bundles-20150520-intel-2015a-R-3.1.3-devtools.eb b/easybuild/easyconfigs/r/R-bundles/R-bundles-20150520-intel-2015a-R-3.1.3-devtools.eb new file mode 100644 index 0000000000..cf38b2b642 --- /dev/null +++ b/easybuild/easyconfigs/r/R-bundles/R-bundles-20150520-intel-2015a-R-3.1.3-devtools.eb @@ -0,0 +1,51 @@ +easyblock = 'Bundle' + +name = 'R-bundles' +version = '20150520' +bundlename = 'devtools' +rver = '3.1.3' +versionsuffix = '-R-%s-%s' % (rver, bundlename) + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +# these are extensions for R +exts_defaultclass = 'RPackage' +exts_filter = ("R -q --no-save", "library(%(ext_name)s)") + +dependencies = [ + ('R', rver), + ('cURL', '7.41.0'), + ('libxml2', '2.9.2'), +] + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.r-project.org/src/contrib/', # current version of packages + 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': name_tmpl, +} + +# !! order of packages is important !! +exts_list = [ + ('XML', '3.98-1.1', ext_options), + ('memoise', '0.2.1', ext_options), + ('whisker', '0.3-2', ext_options), + ('rstudioapi', '0.3.1', ext_options), + ('roxygen2', '4.1.1', ext_options), + ('git2r', '0.10.1', ext_options), + ('RCurl', '1.95-4.6', ext_options), + ('httr', '0.6.1', ext_options), + ('rversions', '1.0.0', ext_options), + ('devtools', '1.8.0', ext_options), +] + +modextrapaths = {'R_LIBS': ''} + +moduleclass = 'lang' + -- GitLab From 0ad26a61082a6538d145fa4a1bef534cc383bcbe Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 15:48:17 +0200 Subject: [PATCH 1158/1217] update to OpenMPI 1.8.5 and OpenBLAS 0.2.14 (foss/2015.05) --- .../Autotools-20150215-GNU-4.9.2-2.25.eb | 17 +++++++ ...2015.01.eb => FFTW-3.3.4-gompi-2015.05.eb} | 2 +- easybuild/easyconfigs/f/foss/foss-2015.01.eb | 39 -------------- easybuild/easyconfigs/g/GNU/GNU-4.9.2-2.25.eb | 2 +- .../easyconfigs/g/gompi/gompi-2015.01.eb | 23 --------- .../h/hwloc/hwloc-1.10.0-GNU-4.9.2-2.25.eb | 23 --------- .../l/libtool/libtool-2.4.2-GNU-4.9.2-2.25.eb | 15 ------ .../numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb | 6 +-- ...BLAS-0.2.13-GNU-4.9.2-2.25-LAPACK-3.5.0.eb | 51 ------------------- .../o/OpenMPI/OpenMPI-1.8.4-GNU-4.9.2-2.25.eb | 34 ------------- ...i-2015.05-OpenBLAS-0.2.14-LAPACK-3.5.0.eb} | 4 +- 11 files changed, 22 insertions(+), 194 deletions(-) create mode 100644 easybuild/easyconfigs/a/Autotools/Autotools-20150215-GNU-4.9.2-2.25.eb rename easybuild/easyconfigs/f/FFTW/{FFTW-3.3.4-gompi-2015.01.eb => FFTW-3.3.4-gompi-2015.05.eb} (96%) delete mode 100644 easybuild/easyconfigs/f/foss/foss-2015.01.eb delete mode 100644 easybuild/easyconfigs/g/gompi/gompi-2015.01.eb delete mode 100644 easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GNU-4.9.2-2.25.eb delete mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.2-GNU-4.9.2-2.25.eb delete mode 100644 easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GNU-4.9.2-2.25-LAPACK-3.5.0.eb delete mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GNU-4.9.2-2.25.eb rename easybuild/easyconfigs/s/ScaLAPACK/{ScaLAPACK-2.0.2-gompi-2015.01-OpenBLAS-0.2.13-LAPACK-3.5.0.eb => ScaLAPACK-2.0.2-gompi-2015.05-OpenBLAS-0.2.14-LAPACK-3.5.0.eb} (89%) diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GNU-4.9.2-2.25.eb new file mode 100644 index 0000000000..25b293c3c4 --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GNU-4.9.2-2.25.eb @@ -0,0 +1,17 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20150215' # date of the most recent change + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015.01.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015.05.eb similarity index 96% rename from easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015.01.eb rename to easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015.05.eb index bcb190c092..0d9c4ae7b5 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015.01.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2015.05.eb @@ -7,7 +7,7 @@ homepage = 'http://www.fftw.org' description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.""" -toolchain = {'name': 'gompi', 'version': '2015.01'} +toolchain = {'name': 'gompi', 'version': '2015.05'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/f/foss/foss-2015.01.eb b/easybuild/easyconfigs/f/foss/foss-2015.01.eb deleted file mode 100644 index 47df95ad70..0000000000 --- a/easybuild/easyconfigs/f/foss/foss-2015.01.eb +++ /dev/null @@ -1,39 +0,0 @@ -easyblock = "Toolchain" - -name = 'foss' -version = '2015.01' - -homepage = '(none)' -description = """GNU Compiler Collection (GCC) based compiler toolchain, including - OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -gccver = '4.9.2' -binutilsver = '2.25' -tcver = '%s-binutils-%s' % (gccver, binutilsver) - -blaslib = 'OpenBLAS' -blasver = '0.2.13' -blas = '%s-%s' % (blaslib, blasver) -blassuff = '-LAPACK-3.5.0' - -# toolchain used to build foss dependencies -comp_mpi_tc_name = 'gompi' -comp_mpi_tc_ver = "%s" % version -comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) - -# compiler toolchain depencies -# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain -# because of toolchain preperation functions -# For binutils, stick to http://wiki.osdev.org/Cross-Compiler_Successful_Builds -dependencies = [ - ('GCC', gccver, '-binutils-%s' % binutilsver), - ('binutils', binutilsver, '', ('GCC', tcver)), - ('OpenMPI', '1.8.4', '', ('GNU', '%s-%s' % (gccver, binutilsver))), - (blaslib, blasver, blassuff, ('GNU', '%s-%s' % (gccver, binutilsver))), - ('FFTW', '3.3.4', '', comp_mpi_tc), - ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), -] - -moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/GNU/GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/g/GNU/GNU-4.9.2-2.25.eb index c1b036b3c1..61b0e08a72 100644 --- a/easybuild/easyconfigs/g/GNU/GNU-4.9.2-2.25.eb +++ b/easybuild/easyconfigs/g/GNU/GNU-4.9.2-2.25.eb @@ -5,7 +5,7 @@ gccver = '4.9.2' binutilsver = '2.25' version = '%s-%s' % (gccver, binutilsver) -homepage = 'http://gnu.org' +homepage = 'http://www.gnu.org/software/' description = "Compiler-only toolchain with GCC and binutils." toolchain = {'name': 'dummy', 'version': 'dummy'} diff --git a/easybuild/easyconfigs/g/gompi/gompi-2015.01.eb b/easybuild/easyconfigs/g/gompi/gompi-2015.01.eb deleted file mode 100644 index 61953c785a..0000000000 --- a/easybuild/easyconfigs/g/gompi/gompi-2015.01.eb +++ /dev/null @@ -1,23 +0,0 @@ -easyblock = "Toolchain" - -name = 'gompi' -version = '2015.01' - -homepage = '(none)' -description = """GNU Compiler Collection (GCC) based compiler toolchain, - including OpenMPI for MPI support.""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -gccver = '4.9.2' -binutilsver = '2.25' -tcver = '%s-binutils-%s' % (gccver, binutilsver) - -# compiler toolchain dependencies -dependencies = [ - ('GCC', gccver, '-binutils-%s' % binutilsver), - ('binutils', binutilsver, '', ('GCC', tcver)), - ('OpenMPI', '1.8.4', '', ('GNU', '%s-%s' % (gccver, binutilsver))), -] - -moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GNU-4.9.2-2.25.eb deleted file mode 100644 index dfcbd3f2c0..0000000000 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GNU-4.9.2-2.25.eb +++ /dev/null @@ -1,23 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'hwloc' -version = '1.10.0' - -homepage = 'http://www.open-mpi.org/projects/hwloc/' -description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction - (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including - NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various - system attributes such as cache and memory information as well as the locality of I/O devices such as - network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering - information about modern computing hardware so as to exploit it accordingly and efficiently.""" - -toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} - -dependencies = [('numactl', '2.0.10')] - -configopts = "--enable-libnuma=$EBROOTNUMACTL" - -source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] -sources = [SOURCE_TAR_GZ] - -moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GNU-4.9.2-2.25.eb deleted file mode 100644 index 9897d9bd11..0000000000 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GNU-4.9.2-2.25.eb +++ /dev/null @@ -1,15 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libtool' -version = '2.4.2' - -homepage = 'http://www.gnu.org/software/libtool' -description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries - behind a consistent, portable interface.""" - -toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [GNU_SOURCE] - -moduleclass = 'lib' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb index 3ada055448..52f1df7369 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb @@ -15,14 +15,10 @@ toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] sources = [SOURCE_TAR_GZ] -builddependencies = [ - ('Automake', '1.15'), - ('libtool', '2.4.2'), -] +builddependencies = [('Autotools', '20150215')] preconfigopts = './autogen.sh && ' - sanity_check_paths = { 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], 'dirs': ['share/man', 'include'] diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GNU-4.9.2-2.25-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GNU-4.9.2-2.25-LAPACK-3.5.0.eb deleted file mode 100644 index 1ff75dff8d..0000000000 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GNU-4.9.2-2.25-LAPACK-3.5.0.eb +++ /dev/null @@ -1,51 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'OpenBLAS' -version = '0.2.13' - -lapackver = '3.5.0' -versionsuffix = '-LAPACK-%s' % lapackver - -homepage = 'http://xianyi.github.com/OpenBLAS/' -description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" - -toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} - -lapack_src = 'lapack-%s.tgz' % lapackver -large_src = 'large.tgz' -timing_src = 'timing.tgz' -sources = [ - 'v%(version)s.tar.gz', - lapack_src, - large_src, - timing_src, -] -source_urls = [ - # order matters, trying to download the LAPACK tarball from GitHub causes trouble - "http://www.netlib.org/lapack/", - "http://www.netlib.org/lapack/timing/", - "https://github.com/xianyi/OpenBLAS/archive/", -] - -patches = [ - (lapack_src, '.'), # copy LAPACK tarball to unpacked OpenBLAS dir - (large_src, '.'), - (timing_src, '.'), -] - -skipsteps = ['configure'] - -buildopts = 'BINARY=64 USE_THREAD=1 CC="$CC" FC="$F77" NO_AFFINITY=1' -installopts = "USE_THREAD=1 PREFIX=%(installdir)s" - -# extensive testing can be enabled by uncommenting the line below -#runtest = 'PATH=.:$PATH lapack-timing' - -sanity_check_paths = { - 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', - 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', - 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], - 'dirs': [], -} - -moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GNU-4.9.2-2.25.eb deleted file mode 100644 index 14daf056ee..0000000000 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-GNU-4.9.2-2.25.eb +++ /dev/null @@ -1,34 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'OpenMPI' -version = '1.8.4' - -homepage = 'http://www.open-mpi.org/' -description = """The Open MPI Project is an open source MPI-2 implementation.""" - -toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] - -dependencies = [('hwloc', '1.10.0')] - -configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' -configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path -configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support -configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading - -# needed for --with-verbs -osdependencies = [('libibverbs-dev', 'libibverbs-devel')] - -sanity_check_paths = { - 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + - ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", - "mpi", "ompitrace", "open-pal", - "open-rte", "vt", "vt-hyb", - "vt-mpi", "vt-mpi-unify"]] + - ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], - 'dirs': ["include/openmpi/ompi/mpi/cxx"], -} - -moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.01-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.05-OpenBLAS-0.2.14-LAPACK-3.5.0.eb similarity index 89% rename from easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.01-OpenBLAS-0.2.13-LAPACK-3.5.0.eb rename to easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.05-OpenBLAS-0.2.14-LAPACK-3.5.0.eb index cd879dacd3..e8390ed236 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.01-OpenBLAS-0.2.13-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.05-OpenBLAS-0.2.14-LAPACK-3.5.0.eb @@ -5,14 +5,14 @@ homepage = 'http://www.netlib.org/scalapack/' description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.""" -toolchain = {'name': 'gompi', 'version': '2015.01'} +toolchain = {'name': 'gompi', 'version': '2015.05'} toolchainopts = {'pic': True} source_urls = [homepage] sources = [SOURCELOWER_TGZ] blaslib = 'OpenBLAS' -blasver = '0.2.13' +blasver = '0.2.14' blassuff = '-LAPACK-3.5.0' versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) -- GitLab From 36303e1d582c3fd5e68fae3d6d28c3b3fdc60711 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 15:58:31 +0200 Subject: [PATCH 1159/1217] add missing easyconfigs --- .../easyconfigs/g/gompi/gompi-2015.05.eb | 23 +++++++++ .../l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb | 15 ++++++ ...BLAS-0.2.14-GNU-4.9.2-2.25-LAPACK-3.5.0.eb | 51 +++++++++++++++++++ .../o/OpenMPI/OpenMPI-1.8.5-GNU-4.9.2-2.25.eb | 34 +++++++++++++ 4 files changed, 123 insertions(+) create mode 100644 easybuild/easyconfigs/g/gompi/gompi-2015.05.eb create mode 100644 easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb create mode 100644 easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.14-GNU-4.9.2-2.25-LAPACK-3.5.0.eb create mode 100644 easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.5-GNU-4.9.2-2.25.eb diff --git a/easybuild/easyconfigs/g/gompi/gompi-2015.05.eb b/easybuild/easyconfigs/g/gompi/gompi-2015.05.eb new file mode 100644 index 0000000000..a9acbdd507 --- /dev/null +++ b/easybuild/easyconfigs/g/gompi/gompi-2015.05.eb @@ -0,0 +1,23 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = '2015.05' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +gccver = '4.9.2' +binutilsver = '2.25' +tcver = '%s-binutils-%s' % (gccver, binutilsver) + +# compiler toolchain dependencies +dependencies = [ + ('GCC', gccver, '-binutils-%s' % binutilsver), + ('binutils', binutilsver, '', ('GCC', tcver)), + ('OpenMPI', '1.8.5', '', ('GNU', '%s-%s' % (gccver, binutilsver))), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb new file mode 100644 index 0000000000..2985ab6f8a --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb @@ -0,0 +1,15 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.14-GNU-4.9.2-2.25-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.14-GNU-4.9.2-2.25-LAPACK-3.5.0.eb new file mode 100644 index 0000000000..23704a985e --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.14-GNU-4.9.2-2.25-LAPACK-3.5.0.eb @@ -0,0 +1,51 @@ +easyblock = 'ConfigureMake' + +name = 'OpenBLAS' +version = '0.2.14' + +lapackver = '3.5.0' +versionsuffix = '-LAPACK-%s' % lapackver + +homepage = 'http://xianyi.github.com/OpenBLAS/' +description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" + +toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} + +lapack_src = 'lapack-%s.tgz' % lapackver +large_src = 'large.tgz' +timing_src = 'timing.tgz' +sources = [ + 'v%(version)s.tar.gz', + lapack_src, + large_src, + timing_src, +] +source_urls = [ + # order matters, trying to download the LAPACK tarball from GitHub causes trouble + "http://www.netlib.org/lapack/", + "http://www.netlib.org/lapack/timing/", + "https://github.com/xianyi/OpenBLAS/archive/", +] + +patches = [ + (lapack_src, '.'), # copy LAPACK tarball to unpacked OpenBLAS dir + (large_src, '.'), + (timing_src, '.'), +] + +skipsteps = ['configure'] + +buildopts = 'BINARY=64 USE_THREAD=1 CC="$CC" FC="$F77" NO_AFFINITY=1' +installopts = "USE_THREAD=1 PREFIX=%(installdir)s" + +# extensive testing can be enabled by uncommenting the line below +#runtest = 'PATH=.:$PATH lapack-timing' + +sanity_check_paths = { + 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', + 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.5-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.5-GNU-4.9.2-2.25.eb new file mode 100644 index 0000000000..17455567fb --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.5-GNU-4.9.2-2.25.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.8.5' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +dependencies = [('hwloc', '1.10.1')] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] + +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in ["mpi_cxx", "mpi_mpifh", + "mpi", "ompitrace", "open-pal", + "open-rte", "vt", "vt-hyb", + "vt-mpi", "vt-mpi-unify"]] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' -- GitLab From 324627c42123041813559bf922af272a562e7d65 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 16:06:20 +0200 Subject: [PATCH 1160/1217] add missing hwloc, also update HPL easyconfig for foss/2015.05 --- ...oss-2015.01.eb => HPL-2.1-foss-2015.05.eb} | 2 +- .../h/hwloc/hwloc-1.10.1-GNU-4.9.2-2.25.eb | 23 +++++++++++++++++++ 2 files changed, 24 insertions(+), 1 deletion(-) rename easybuild/easyconfigs/h/HPL/{HPL-2.1-foss-2015.01.eb => HPL-2.1-foss-2015.05.eb} (92%) create mode 100644 easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GNU-4.9.2-2.25.eb diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015.01.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015.05.eb similarity index 92% rename from easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015.01.eb rename to easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015.05.eb index 6e2eb261d6..6e7b16eb21 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015.01.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2015.05.eb @@ -6,7 +6,7 @@ description = """HPL is a software package that solves a (random) dense linear s on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.""" -toolchain = {'name': 'foss', 'version': '2015.01'} +toolchain = {'name': 'foss', 'version': '2015.05'} toolchainopts = {'optarch': True, 'usempi': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GNU-4.9.2-2.25.eb new file mode 100644 index 0000000000..33b2aeafd6 --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GNU-4.9.2-2.25.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.10.1' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} + +dependencies = [('numactl', '2.0.10')] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'system' -- GitLab From 217d5da8dc55d077a2acb7ba42db1a0ffc2896b6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 16:15:07 +0200 Subject: [PATCH 1161/1217] add foss/2015.05 easyconfig --- easybuild/easyconfigs/f/foss/foss-2015.05.eb | 39 ++++++++++++++++++++ 1 file changed, 39 insertions(+) create mode 100644 easybuild/easyconfigs/f/foss/foss-2015.05.eb diff --git a/easybuild/easyconfigs/f/foss/foss-2015.05.eb b/easybuild/easyconfigs/f/foss/foss-2015.05.eb new file mode 100644 index 0000000000..e468cc0b43 --- /dev/null +++ b/easybuild/easyconfigs/f/foss/foss-2015.05.eb @@ -0,0 +1,39 @@ +easyblock = "Toolchain" + +name = 'foss' +version = '2015.05' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, including + OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +gccver = '4.9.2' +binutilsver = '2.25' +tcver = '%s-binutils-%s' % (gccver, binutilsver) + +blaslib = 'OpenBLAS' +blasver = '0.2.14' +blas = '%s-%s' % (blaslib, blasver) +blassuff = '-LAPACK-3.5.0' + +# toolchain used to build foss dependencies +comp_mpi_tc_name = 'gompi' +comp_mpi_tc_ver = "%s" % version +comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) + +# compiler toolchain depencies +# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain +# because of toolchain preperation functions +# For binutils, stick to http://wiki.osdev.org/Cross-Compiler_Successful_Builds +dependencies = [ + ('GCC', gccver, '-binutils-%s' % binutilsver), + ('binutils', binutilsver, '', ('GCC', tcver)), + ('OpenMPI', '1.8.5', '', ('GNU', '%s-%s' % (gccver, binutilsver))), + (blaslib, blasver, blassuff, ('GNU', '%s-%s' % (gccver, binutilsver))), + ('FFTW', '3.3.4', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), +] + +moduleclass = 'toolchain' -- GitLab From afa60d29df4fe8302f4ec69816fa2cfbe8b0415f Mon Sep 17 00:00:00 2001 From: Ewan Higgs Date: Wed, 20 May 2015 16:45:41 +0200 Subject: [PATCH 1162/1217] Roll back the cURL version since 7.41.0 is parked in a WIP PR. --- .../R-bundles-20150520-intel-2015a-R-3.1.3-devtools.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R-bundles/R-bundles-20150520-intel-2015a-R-3.1.3-devtools.eb b/easybuild/easyconfigs/r/R-bundles/R-bundles-20150520-intel-2015a-R-3.1.3-devtools.eb index cf38b2b642..8cb259acf8 100644 --- a/easybuild/easyconfigs/r/R-bundles/R-bundles-20150520-intel-2015a-R-3.1.3-devtools.eb +++ b/easybuild/easyconfigs/r/R-bundles/R-bundles-20150520-intel-2015a-R-3.1.3-devtools.eb @@ -17,7 +17,7 @@ exts_filter = ("R -q --no-save", "library(%(ext_name)s)") dependencies = [ ('R', rver), - ('cURL', '7.41.0'), + ('cURL', '7.40.0'), ('libxml2', '2.9.2'), ] -- GitLab From 6947b4af64d910b5b3586d4a29c4a12a458384b3 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 16:54:47 +0200 Subject: [PATCH 1163/1217] don't fiddle with existing GCC-4.9.2.eb easyconfig --- easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb b/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb index ebf339e6b0..cb9f3aa4f2 100644 --- a/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/GCC/GCC-4.9.2.eb @@ -5,7 +5,7 @@ homepage = 'http://gcc.gnu.org/' description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).""" -toolchain = {'name': 'dummy', 'version': ''} +toolchain = {'name': 'dummy', 'version': 'dummy'} mpfr_version = '3.1.2' -- GitLab From 19101529562e7a25335428c780ab6320c6bcabbb Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 16:59:04 +0200 Subject: [PATCH 1164/1217] readd binutils easyconfig that was there already --- .../b/binutils/binutils-2.25-GCC-4.9.2.eb | 26 +++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb new file mode 100644 index 0000000000..e44a4bc4f7 --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'binutils' +version = '2.25' + +homepage = 'http://directory.fsf.org/project/binutils/' +description = "binutils: GNU binary utilities" + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +dependencies = [ + ('zlib', '1.2.8'), +] + +binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a'] + + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], + 'dirs': [], +} + +moduleclass = 'tools' -- GitLab From 2acb0acb676ef4263c9e9b41c07626935db96886 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 17:08:03 +0200 Subject: [PATCH 1165/1217] add --with-sysroot=/ to all binutils easyconfigs --- .../b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb | 7 +++++-- .../b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb | 7 +++++-- .../easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb | 5 ++++- .../easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb | 3 +++ .../easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb | 3 +++ .../easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb | 3 +++ 6 files changed, 23 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb index 6d0b4d9315..09be4e2513 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb @@ -18,11 +18,14 @@ version = '2.22' homepage = 'http://directory.fsf.org/project/binutils/' description = "binutils-2.22: GNU binary utilities" +toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} +toolchainopts = {'pic': True} + sources = ['binutils-%s.tar.bz2' % version] source_urls = [GNU_SOURCE] -toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} -toolchainopts = {'pic': True} +# make sure that system libraries are also considered by ld +configopts = '--with-sysroot=/' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb index 129afa50d1..037eea64d6 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb @@ -18,11 +18,14 @@ version = '2.22' homepage = 'http://directory.fsf.org/project/binutils/' description = "binutils-2.22: GNU binary utilities" +toolchain = {'name': 'gompi', 'version': '1.4.12-no-OFED'} +toolchainopts = {'pic': True} + sources = ['binutils-%s.tar.bz2' % version] source_urls = [GNU_SOURCE] -toolchain = {'name': 'gompi', 'version': '1.4.12-no-OFED'} -toolchainopts = {'pic': True} +# make sure that system libraries are also considered by ld +configopts = '--with-sysroot=/' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb index 98ff0c9aef..6eefeecf7f 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb @@ -18,10 +18,13 @@ version = '2.22' homepage = 'http://directory.fsf.org/project/binutils/' description = "binutils-2.22: GNU binary utilities" +toolchain = {'name': 'goolf', 'version': '1.4.10'} + sources = ['binutils-%s.tar.bz2' % version] source_urls = [GNU_SOURCE] -toolchain = {'name': 'goolf', 'version': '1.4.10'} +# make sure that system libraries are also considered by ld +configopts = '--with-sysroot=/' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb b/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb index 7e0429c8a1..f289f62f1b 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb @@ -15,6 +15,9 @@ dependencies = [ ('zlib', '1.2.8'), ] +# make sure that system libraries are also considered by ld +configopts = '--with-sysroot=/' + binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb b/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb index 35ffa05491..90ee55811f 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb @@ -15,6 +15,9 @@ dependencies = [ ('zlib', '1.2.8'), ] +# make sure that system libraries are also considered by ld +configopts = '--with-sysroot=/' + # disable warning/error #175 ("subscript out of range") buildopts = 'CFLAGS="$CFLAGS -wd175"' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb index e44a4bc4f7..080795bcde 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb @@ -15,6 +15,9 @@ dependencies = [ ('zlib', '1.2.8'), ] +# make sure that system libraries are also considered by ld +configopts = '--with-sysroot=/' + binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] sanity_check_paths = { -- GitLab From 948fa64a0701c1236890593168e3cf07d3e725a7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 17:27:44 +0200 Subject: [PATCH 1166/1217] include Tcl and Tk as dependencies in R easyconfig --- .../easyconfigs/r/R/R-3.1.3-intel-2015a.eb | 2 ++ .../t/Tcl/Tcl-8.6.4-intel-2015a.eb | 25 +++++++++++++++++++ .../t/Tk/Tk-8.6.4-intel-2015a-no-X11.eb | 24 ++++++++++++++++++ 3 files changed, 51 insertions(+) create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2015a.eb create mode 100644 easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a-no-X11.eb diff --git a/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb index 19bdf89c03..fefd97519c 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb @@ -20,6 +20,8 @@ dependencies = [ ('libpng', '1.6.16'), # for plotting in R ('libjpeg-turbo', '1.4.0'), # for plottting in R ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it + ('Tcl', '8.6.4'), # for tcltk + ('Tk', '8.6.4', '-no-X11'), # for tcltk ] name_tmpl = '%(name)s_%(version)s.tar.gz' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2015a.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2015a.eb new file mode 100644 index 0000000000..b2673863fd --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.4' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +dependencies = [ + ('zlib', '1.2.8'), +] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a-no-X11.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a-no-X11.eb new file mode 100644 index 0000000000..39ccca9596 --- /dev/null +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2015a-no-X11.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'Tk' +version = '8.6.4' +versionsuffix = '-no-X11' + +homepage = 'http://www.tcl.tk/' +description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building + a graphical user interface (GUI) in many different programming languages.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +dependencies = [ + ('Tcl', version), +] + +configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib --without-x CFLAGS="-I$EBROOTTCL/include"' + +start_dir = 'unix' + +moduleclass = 'vis' -- GitLab From 46e6b83f725bba2477cc26f82853bbe7b2d6376a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 18:22:29 +0200 Subject: [PATCH 1167/1217] Revert "don't bother committing foss version" This reverts commit b97ff1c4e5b44c4ea3f935b1d1ed1fbbcb67e668. --- .../r/Ruby/Ruby-2.1.5-foss-2015a.eb | 33 +++++++++++++++++++ .../r/Ruby/Ruby-2.1.5-intel-2014b.eb | 33 +++++++++++++++++++ 2 files changed, 66 insertions(+) create mode 100644 easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb create mode 100644 easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb new file mode 100644 index 0000000000..c585ab1d31 --- /dev/null +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb @@ -0,0 +1,33 @@ +# With <3 for EasyBuild +# +# EasyConfig for Ruby 2.1: +# ---------------------------------------------------------------------------- +# Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH +# License: MIT +# Authors: Aaron Zauner +# ---------------------------------------------------------------------------- + +name = 'Ruby' +version = '2.1.5' + +homepage = 'https://www.ruby-lang.org' +description = """Ruby is a dynamic, open source programming language with + a focus on simplicity and productivity. It has an elegant syntax that is + natural to read and easy to write.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://cache.ruby-lang.org/pub/ruby/'] + +sanity_check_paths = { + 'files': ['bin/ruby', 'bin/rake', 'bin/gem', 'bin/testrb', 'bin/erb', + 'bin/ri', 'bin/irb', 'bin/rdoc', 'lib/libruby.so.2.1.0', + 'lib/libruby-static.a', 'lib/libruby.so'], + 'dirs': ['lib/ruby/2.1.0', 'lib/ruby/gems', 'lib/pkgconfig', 'include/ruby-2.1.0'] +} + +configopts = "--disable-install-doc --enable-shared" + +moduleclass = 'lang' + diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb new file mode 100644 index 0000000000..32eca44aae --- /dev/null +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb @@ -0,0 +1,33 @@ +# With <3 for EasyBuild +# +# EasyConfig for Ruby 2.1: +# ---------------------------------------------------------------------------- +# Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH +# License: MIT +# Authors: Aaron Zauner +# ---------------------------------------------------------------------------- +easyblock = 'ConfigureMake' + +name = 'Ruby' +version = '2.1.5' + +homepage = 'https://www.ruby-lang.org' +description = """Ruby is a dynamic, open source programming language with + a focus on simplicity and productivity. It has an elegant syntax that is + natural to read and easy to write.""" + +toolchain = {'name': 'intel', 'version': '2014b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://cache.ruby-lang.org/pub/ruby/'] + +sanity_check_paths = { + 'files': ['bin/ruby', 'bin/rake', 'bin/gem', 'bin/testrb', 'bin/erb', + 'bin/ri', 'bin/irb', 'bin/rdoc', 'lib/libruby.so.2.1.0', + 'lib/libruby-static.a', 'lib/libruby.so'], + 'dirs': ['lib/ruby/2.1.0', 'lib/ruby/gems', 'lib/pkgconfig', 'include/ruby-2.1.0'] +} + +configopts = "--disable-install-doc --enable-shared" + +moduleclass = 'lang' -- GitLab From c0e1547ae6e599aed6800950d34a54674ad0040c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 18:22:51 +0200 Subject: [PATCH 1168/1217] don't bother committing foss version (fixed) --- .../r/Ruby/Ruby-2.1.5-foss-2015a.eb | 33 ------------------- 1 file changed, 33 deletions(-) delete mode 100644 easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb deleted file mode 100644 index c585ab1d31..0000000000 --- a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-foss-2015a.eb +++ /dev/null @@ -1,33 +0,0 @@ -# With <3 for EasyBuild -# -# EasyConfig for Ruby 2.1: -# ---------------------------------------------------------------------------- -# Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH -# License: MIT -# Authors: Aaron Zauner -# ---------------------------------------------------------------------------- - -name = 'Ruby' -version = '2.1.5' - -homepage = 'https://www.ruby-lang.org' -description = """Ruby is a dynamic, open source programming language with - a focus on simplicity and productivity. It has an elegant syntax that is - natural to read and easy to write.""" - -toolchain = {'name': 'foss', 'version': '2015a'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://cache.ruby-lang.org/pub/ruby/'] - -sanity_check_paths = { - 'files': ['bin/ruby', 'bin/rake', 'bin/gem', 'bin/testrb', 'bin/erb', - 'bin/ri', 'bin/irb', 'bin/rdoc', 'lib/libruby.so.2.1.0', - 'lib/libruby-static.a', 'lib/libruby.so'], - 'dirs': ['lib/ruby/2.1.0', 'lib/ruby/gems', 'lib/pkgconfig', 'include/ruby-2.1.0'] -} - -configopts = "--disable-install-doc --enable-shared" - -moduleclass = 'lang' - -- GitLab From b6f710ac19644014cbec67d6e8c046af4b59ae0a Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 20 May 2015 18:49:43 +0200 Subject: [PATCH 1169/1217] add missing build dep for binutils in zlib --- .../easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2-binutils-2.25.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2-binutils-2.25.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2-binutils-2.25.eb index 64ff4fbec6..3f419579d9 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2-binutils-2.25.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2-binutils-2.25.eb @@ -13,6 +13,8 @@ toolchain = {'name': 'GCC', 'version': '4.9.2-binutils-2.25'} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] +builddependencies = [('binutils', '2.25', '', True)] + sanity_check_paths = { 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], 'dirs': [], -- GitLab From 76f35e21156e30e817fa9dc9a55e95ce559a8239 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 20 May 2015 18:50:35 +0200 Subject: [PATCH 1170/1217] libtool was missing M4 dep --- easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb index 2985ab6f8a..f29d89e1c6 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb @@ -12,4 +12,6 @@ toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] +dependencies = [('M4', '1.4.17')] + moduleclass = 'lib' -- GitLab From 627201ca872c434956e141ea54f1ae6b115ce694 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 20 May 2015 19:26:58 +0200 Subject: [PATCH 1171/1217] statically link zlib in binutils --- .../binutils-2.25-GCC-4.9.2-binutils-2.25.eb | 15 ++++++++++----- 1 file changed, 10 insertions(+), 5 deletions(-) diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb index b93783f696..f316e5d537 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb @@ -6,18 +6,23 @@ version = '2.25' homepage = 'http://directory.fsf.org/project/binutils/' description = "binutils: GNU binary utilities" -sources = [SOURCE_TAR_GZ] -source_urls = [GNU_SOURCE] - toolchain = {'name': 'GCC', 'version': '4.9.2-binutils-%(version)s'} -dependencies = [('zlib', '1.2.8')] +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] -builddependencies = [('binutils', version, '', True)] +builddependencies = [ + ('zlib', '1.2.8'), + ('binutils', version, '', True) +] # make sure that system libraries are also considered by ld configopts = '--with-sysroot=/' +# statically link with zlib, to avoid runtime dependency on zlib +preconfigopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' +prebuildopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' + binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] -- GitLab From 38ce9f64b23d7bdf5de4d590e4670b7c42a5dbbc Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 20 May 2015 20:54:18 +0200 Subject: [PATCH 1172/1217] all binutils-2.25 link statically with zlib --- .../binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb | 6 +++--- .../easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb | 11 +++++++---- easybuild/easyconfigs/b/binutils/binutils-2.25.eb | 4 ++-- 3 files changed, 12 insertions(+), 9 deletions(-) diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb index f316e5d537..cb9289d4be 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb @@ -16,13 +16,13 @@ builddependencies = [ ('binutils', version, '', True) ] -# make sure that system libraries are also considered by ld -configopts = '--with-sysroot=/' - # statically link with zlib, to avoid runtime dependency on zlib preconfigopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' prebuildopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' +# make sure that system libraries are also considered by ld +configopts = '--with-sysroot=/' + binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb index 080795bcde..8aefcfeeee 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb @@ -6,20 +6,23 @@ version = '2.25' homepage = 'http://directory.fsf.org/project/binutils/' description = "binutils: GNU binary utilities" +toolchain = {'name': 'GCC', 'version': '4.9.2'} + sources = [SOURCE_TAR_GZ] source_urls = [GNU_SOURCE] -toolchain = {'name': 'GCC', 'version': '4.9.2'} +builddependencies = [('zlib', '1.2.8')] -dependencies = [ - ('zlib', '1.2.8'), -] +# statically link with zlib, to avoid runtime dependency on zlib +preconfigopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' +prebuildopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' # make sure that system libraries are also considered by ld configopts = '--with-sysroot=/' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] + sanity_check_paths = { 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a'] + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25.eb index dee468601d..3c7395c4a9 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25.eb @@ -6,11 +6,11 @@ version = '2.25' homepage = 'http://directory.fsf.org/project/binutils/' description = "binutils: GNU binary utilities" +toolchain = {'name': 'dummy', 'version': ''} + sources = [SOURCE_TAR_GZ] source_urls = [GNU_SOURCE] -toolchain = {'name': 'dummy', 'version': ''} - builddependencies = [('zlib', '1.2.8')] # statically link with zlib, to avoid runtime dependency on zlib -- GitLab From f6913e1ca0c1873885fc8c49f7b1435f485d090c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 20:57:29 +0200 Subject: [PATCH 1173/1217] flesh out FPM into a dedicated easyconfig, sanity_check_paths were moved to Ruby easyblock --- .../easyconfigs/f/FPM/FPM-1.3.3-Ruby-2.1.5.eb | 17 +++++++++++++++++ easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb | 14 +------------- 2 files changed, 18 insertions(+), 13 deletions(-) create mode 100644 easybuild/easyconfigs/f/FPM/FPM-1.3.3-Ruby-2.1.5.eb diff --git a/easybuild/easyconfigs/f/FPM/FPM-1.3.3-Ruby-2.1.5.eb b/easybuild/easyconfigs/f/FPM/FPM-1.3.3-Ruby-2.1.5.eb new file mode 100644 index 0000000000..a275aabe94 --- /dev/null +++ b/easybuild/easyconfigs/f/FPM/FPM-1.3.3-Ruby-2.1.5.eb @@ -0,0 +1,17 @@ +easyblock = 'RubyGem' + +name = 'FPM' +version = '1.3.3' + +homepage = 'https://github.com/jordansissel/fpm' +description = """Effing package management! Build packages for multiple platforms (deb, rpm, etc) with great ease + and sanity.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['http://rubygems.org/downloads/'] +sources = ['%(namelower)s-%(version)s.gem'] + +dependencies = [('Ruby', '2.1.5')] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb index d422f5a2f3..a83d1888f2 100644 --- a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb @@ -20,19 +20,8 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://cache.ruby-lang.org/pub/ruby/'] -# Due to the way versioning works now with ruby, the libraries and such are labelled major.minor.0 -sanity_check_paths = { - 'files': ['bin/ruby', 'bin/rake', 'bin/gem', 'bin/testrb', 'bin/erb', - 'bin/ri', 'bin/irb', 'bin/rdoc', 'lib/libruby.so.%(version_major_minor)s.0', - 'lib/libruby-static.a', 'lib/libruby.so'], - 'dirs': ['lib/ruby/%(version_major_minor)s.0', 'lib/ruby/gems', 'lib/pkgconfig', 'include/ruby-%(version_major_minor)s.0'] -} - - ext_options = { - 'source_urls': [ - 'http://rubygems.org/downloads/', # gem archive - ], + 'source_urls': ['http://rubygems.org/downloads/'], 'source_tmpl': '%(name)s-%(version)s.gem', } @@ -44,7 +33,6 @@ exts_list = [ ('backports', '3.6.4', ext_options), ('arr-pm', '0.0.9', ext_options), ('clamp', '0.6.4', ext_options), - ('fpm', '1.3.3', ext_options), ] moduleclass = 'lang' -- GitLab From 4dad61c9513cce50dd112e6e87c4ca4584e26049 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 21:16:37 +0200 Subject: [PATCH 1174/1217] bump versions: Ruby 2.1.6 + latest extension versions --- ...1.3.3-Ruby-2.1.5.eb => FPM-1.3.3-Ruby-2.1.6.eb} | 5 ++++- .../r/Ruby/{Ruby-2.1.5.eb => Ruby-2.1.6.eb} | 14 +++++++------- 2 files changed, 11 insertions(+), 8 deletions(-) rename easybuild/easyconfigs/f/FPM/{FPM-1.3.3-Ruby-2.1.5.eb => FPM-1.3.3-Ruby-2.1.6.eb} (81%) rename easybuild/easyconfigs/r/Ruby/{Ruby-2.1.5.eb => Ruby-2.1.6.eb} (78%) diff --git a/easybuild/easyconfigs/f/FPM/FPM-1.3.3-Ruby-2.1.5.eb b/easybuild/easyconfigs/f/FPM/FPM-1.3.3-Ruby-2.1.6.eb similarity index 81% rename from easybuild/easyconfigs/f/FPM/FPM-1.3.3-Ruby-2.1.5.eb rename to easybuild/easyconfigs/f/FPM/FPM-1.3.3-Ruby-2.1.6.eb index a275aabe94..b6d3efe3ac 100644 --- a/easybuild/easyconfigs/f/FPM/FPM-1.3.3-Ruby-2.1.5.eb +++ b/easybuild/easyconfigs/f/FPM/FPM-1.3.3-Ruby-2.1.6.eb @@ -3,6 +3,9 @@ easyblock = 'RubyGem' name = 'FPM' version = '1.3.3' +rubyver = '2.1.6' +versionsuffix = '-Ruby-%s' % rubyver + homepage = 'https://github.com/jordansissel/fpm' description = """Effing package management! Build packages for multiple platforms (deb, rpm, etc) with great ease and sanity.""" @@ -12,6 +15,6 @@ toolchain = {'name': 'dummy', 'version': ''} source_urls = ['http://rubygems.org/downloads/'] sources = ['%(namelower)s-%(version)s.gem'] -dependencies = [('Ruby', '2.1.5')] +dependencies = [('Ruby', rubyver)] moduleclass = 'tools' diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.6.eb similarity index 78% rename from easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb rename to easybuild/easyconfigs/r/Ruby/Ruby-2.1.6.eb index a83d1888f2..b2e22e2b13 100644 --- a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5.eb +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.6.eb @@ -8,7 +8,7 @@ # ---------------------------------------------------------------------------- name = 'Ruby' -version = '2.1.5' +version = '2.1.6' homepage = 'https://www.ruby-lang.org' description = """Ruby is a dynamic, open source programming language with @@ -26,13 +26,13 @@ ext_options = { } exts_list = [ - ('ffi', '1.9.6', ext_options), - ('childprocess', '0.5.5', ext_options), - ('json', '1.8.2', ext_options), - ('cabin', '0.7.1', ext_options), + ('ffi', '1.9.8', ext_options), + ('childprocess', '0.5.6', ext_options), + ('json', '1.8.2', ext_options), + ('cabin', '0.7.1', ext_options), ('backports', '3.6.4', ext_options), - ('arr-pm', '0.0.9', ext_options), - ('clamp', '0.6.4', ext_options), + ('arr-pm', '0.0.10', ext_options), + ('clamp', '0.6.5', ext_options), ] moduleclass = 'lang' -- GitLab From b78e23ea4e58b6aeb28fd761199985966487b8c7 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 20 May 2015 22:03:41 +0200 Subject: [PATCH 1175/1217] include Tcl and Tk as dependencies in R foss/2015a easyconfig --- .../easyconfigs/r/R/R-3.1.3-foss-2015a.eb | 2 ++ .../easyconfigs/t/Tcl/Tcl-8.6.4-foss-2015a.eb | 25 +++++++++++++++++++ .../t/Tk/Tk-8.6.4-foss-2015a-no-X11.eb | 24 ++++++++++++++++++ 3 files changed, 51 insertions(+) create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-foss-2015a.eb create mode 100644 easybuild/easyconfigs/t/Tk/Tk-8.6.4-foss-2015a-no-X11.eb diff --git a/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb index ad11c875f8..5d7d661a1f 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb @@ -20,6 +20,8 @@ dependencies = [ ('libpng', '1.6.16'), # for plotting in R ('libjpeg-turbo', '1.4.0'), # for plottting in R ('Java', '1.8.0_25', '', True), # Java bindings are built if Java is found, might as well provide it + ('Tcl', '8.6.4'), # for tcltk + ('Tk', '8.6.4', '-no-X11'), # for tcltk ] name_tmpl = '%(name)s_%(version)s.tar.gz' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-foss-2015a.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-foss-2015a.eb new file mode 100644 index 0000000000..d1a6b6efb2 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-foss-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.4' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +dependencies = [ + ('zlib', '1.2.8'), +] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-foss-2015a-no-X11.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-foss-2015a-no-X11.eb new file mode 100644 index 0000000000..fee35bd216 --- /dev/null +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-foss-2015a-no-X11.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'Tk' +version = '8.6.4' +versionsuffix = '-no-X11' + +homepage = 'http://www.tcl.tk/' +description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building + a graphical user interface (GUI) in many different programming languages.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +dependencies = [ + ('Tcl', version), +] + +configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib --without-x CFLAGS="-I$EBROOTTCL/include"' + +start_dir = 'unix' + +moduleclass = 'vis' -- GitLab From f2d25bea1c5399f3d5b22e2f25f915ab2adac5ff Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 10:05:19 +0200 Subject: [PATCH 1176/1217] {vis}[intel/2015a] SPIDER 22.10 --- .../s/SPIDER/SPIDER-22.10-intel-2015a.eb | 41 +++++++++++ .../SPIDER-22.10_fix-syntax-ifort.patch | 71 +++++++++++++++++++ 2 files changed, 112 insertions(+) create mode 100644 easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a.eb create mode 100644 easybuild/easyconfigs/s/SPIDER/SPIDER-22.10_fix-syntax-ifort.patch diff --git a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a.eb b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a.eb new file mode 100644 index 0000000000..f9744a6899 --- /dev/null +++ b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'SPIDER' +version = '22.10' + +homepage = 'http://spider.wadsworth.org/spider_doc/spider/docs/spider.html' +description = """SPIDER (System for Processing Image Data from Electron microscopy and Related fields) is + an image processing system for electron microscopy.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'static': True} + +source_urls = ['http://spider.wadsworth.org/spider_doc/spider/download/'] +sources = ['spiderweb.%(version)s.tar.gz'] + +patches = ['SPIDER-%(version)s_fix-syntax-ifort.patch'] + +dependencies = [('FFTW', '3.3.4')] + +start_dir = 'spider/src' + +buildininstalldir = True + +parallel = 1 + +skipsteps = ['configure', 'install'] + +prebuildopts = "rm ../bin/spider* && rm ../src/spider*.[ao] && " +buildopts = '-f Makefile_linux COMP="$F90" EXE=spider FFTWLIBDIR=$EBROOTFFTW/lib ' +buildopts += 'FFLAGS="$F90FLAGS -WB -DSP_LIBFFTW3 -DSP_LINUX -DSP_IFC -fpp -c" LF="$F90FLAGS"' +#buildopts += 'FFLAGS="$F90FLAGS -DHAS_IEEE -DSP_LIBFFTW3 -DSP_LINUX -DSP_IFC -DSP_MP -c" LF="$F90FLAGS"' +#buildopts += 'FFLAGS="$F90FLAGS -DHAS_IEEE -DSP_LIBFFTW3 -DSP_LINUX -DSP_IFC -DUSE_MPI -c" LF="$F90FLAGS"' + +modextrapaths = {'PATH': ['spider/bin']} + +sanity_check_paths = { + 'files': ['spider/bin/spider'], + 'dirs': [''], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10_fix-syntax-ifort.patch b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10_fix-syntax-ifort.patch new file mode 100644 index 0000000000..9857ea9f14 --- /dev/null +++ b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10_fix-syntax-ifort.patch @@ -0,0 +1,71 @@ +--- spider/src/copyfromtif.f.orig 2014-11-20 17:31:58.000000000 +0100 ++++ spider/src/copyfromtif.f 2015-05-20 20:18:45.688100002 +0200 +@@ -88,7 +88,7 @@ + INTEGER(KIND=1), ALLOCATABLE :: I1VALS(:) + INTEGER(KIND=4), ALLOCATABLE :: I4VALS(:) + +- CHARACTER(LEN=1), ALLOCATABLE :: CVAL(:) ++ CHARACTER(LEN=:), ALLOCATABLE :: CVAL + + CHARACTER(LEN=24) :: CDATE + +@@ -290,7 +290,7 @@ + IF ( ICOUNT > ICVAL_LEN) THEN + IF (ALLOCATED(CVAL)) DEALLOCATE(CVAL) + ICVAL_LEN = ICOUNT +- ALLOCATE(CVAL(1)(ICVAL_LEN), STAT=IRTFLG) ++ ALLOCATE(CHARACTER(LEN=ICVAL_LEN) :: CVAL, STAT=IRTFLG) + + IF (IRTFLG .NE. 0) THEN + CALL ERRT(46,'COPYFROMTIF; CVAL...',ICVAL_LEN) +@@ -432,7 +432,7 @@ + GOTRESU = .TRUE. + + ELSEIF (ITAG == 306) THEN +- CDATE = CVAL(1)(1:22) ++ CDATE = CVAL(1:22) + c IF (DEBUG) WRITE(NOUT,'(2X,A,1X,200A)')'DATE & TIME:', + c & CVAL(1)(1:ICOUNT) + GOTDATE = .TRUE. +--- spider/src/copypos.f.orig 2015-05-20 21:21:12.693293000 +0200 ++++ spider/src/copypos.f 2015-05-20 21:21:37.499077116 +0200 +@@ -269,7 +269,7 @@ + ENDIF + + C GREATER OF (0 AND (THE SMALLER OF RVAL AND 255)) +- IVAL = MAX(0,MIN(RVAL, 255.)) ++ IVAL = MAX(0.,MIN(RVAL, 255.)) + + IF (FLIP) THEN + IVAL = 255 - IVAL +--- spider/src/hisd.f.orig 2015-05-20 21:30:04.788208000 +0200 ++++ spider/src/hisd.f 2015-05-20 21:30:29.848221000 +0200 +@@ -146,9 +146,7 @@ + & 'OUTPUT DOC FILE (OR * IF NONE)',ISOLD,APPEND,MESSAGE, + & NEWFILE,IRTFLG) + +- WANTDOC = (IRTFLG == 0) +- +- IF (WANTDOC) THEN ++ IF (IRTFLG == 0) THEN + C OUTPUT TO DOC FILE + + C 123456789 123456789 123456789 123456789 123456789 +--- spider/src/star2doc.f.orig 2015-05-20 21:41:24.588241000 +0200 ++++ spider/src/star2doc.f 2015-05-20 21:41:50.069338858 +0200 +@@ -82,6 +82,7 @@ + CHARACTER(LEN=1) :: CDUM + INTEGER :: LUNDOCT,ILOC,IT,NLIST,ILAST + INTEGER :: IHI,I,IKEY,IRTFLG,LENREC,IVAR,ITOK ++ INTEGER :: NSPI + + LOGICAL :: ISOPEN,EX,CALLERRT,ASKNAM + LOGICAL :: ADDEXT,GETNAME +--- /gpfs/scratch/projects/project_gpilot/vsc40023/software/SPIDER/22.10-intel-2015a/spider/src/Makebody.inc.orig 2015-05-21 09:53:57.937621000 +0200 ++++ /gpfs/scratch/projects/project_gpilot/vsc40023/software/SPIDER/22.10-intel-2015a/spider/src/Makebody.inc 2015-05-21 09:52:36.558197000 +0200 +@@ -14,4 +14,4 @@ + .f.a: + $(COMP) $(FFLAGS) $< + $(AR) $(AFLAGS) $(LIB) $*.o +- @\rm $*.o ++# @\rm $*.o -- GitLab From b1b0d1ed44844db6e5e773b53ea20a18b485f6f6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 10:06:21 +0200 Subject: [PATCH 1177/1217] fix path in SPIDER patch --- .../easyconfigs/s/SPIDER/SPIDER-22.10_fix-syntax-ifort.patch | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10_fix-syntax-ifort.patch b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10_fix-syntax-ifort.patch index 9857ea9f14..3f36cf0b41 100644 --- a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10_fix-syntax-ifort.patch +++ b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10_fix-syntax-ifort.patch @@ -61,8 +61,8 @@ LOGICAL :: ISOPEN,EX,CALLERRT,ASKNAM LOGICAL :: ADDEXT,GETNAME ---- /gpfs/scratch/projects/project_gpilot/vsc40023/software/SPIDER/22.10-intel-2015a/spider/src/Makebody.inc.orig 2015-05-21 09:53:57.937621000 +0200 -+++ /gpfs/scratch/projects/project_gpilot/vsc40023/software/SPIDER/22.10-intel-2015a/spider/src/Makebody.inc 2015-05-21 09:52:36.558197000 +0200 +--- spider/src/Makebody.inc.orig 2015-05-21 09:53:57.937621000 +0200 ++++ spider/src/Makebody.inc 2015-05-21 09:52:36.558197000 +0200 @@ -14,4 +14,4 @@ .f.a: $(COMP) $(FFLAGS) $< -- GitLab From a54658145a7cfe4633c9958ede6b2d7e44defd23 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 10:40:43 +0200 Subject: [PATCH 1178/1217] add -mt and -mpi variants of SPIDER, extend patch --- .../s/SPIDER/SPIDER-22.10-intel-2015a-mpi.eb | 40 +++++++++++++++++++ .../s/SPIDER/SPIDER-22.10-intel-2015a-mt.eb | 40 +++++++++++++++++++ .../s/SPIDER/SPIDER-22.10-intel-2015a.eb | 4 +- .../SPIDER-22.10_fix-syntax-ifort.patch | 27 +++++++++++++ 4 files changed, 108 insertions(+), 3 deletions(-) create mode 100644 easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mpi.eb create mode 100644 easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mt.eb diff --git a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mpi.eb b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mpi.eb new file mode 100644 index 0000000000..051f460b6a --- /dev/null +++ b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mpi.eb @@ -0,0 +1,40 @@ +easyblock = 'ConfigureMake' + +name = 'SPIDER' +version = '22.10' +versionsuffix = '-mpi' + +homepage = 'http://spider.wadsworth.org/spider_doc/spider/docs/spider.html' +description = """SPIDER (System for Processing Image Data from Electron microscopy and Related fields) is + an image processing system for electron microscopy.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'static': True, 'usempi': True} + +source_urls = ['http://spider.wadsworth.org/spider_doc/spider/download/'] +sources = ['spiderweb.%(version)s.tar.gz'] + +patches = ['SPIDER-%(version)s_fix-syntax-ifort.patch'] + +dependencies = [('FFTW', '3.3.4')] + +start_dir = 'spider/src' + +buildininstalldir = True + +parallel = 1 + +skipsteps = ['configure', 'install'] + +prebuildopts = "rm ../bin/spider* && rm ../src/spider*.[ao] && " +buildopts = '-f Makefile_linux COMP="$F90" EXE=spider FFTWLIBDIR=$EBROOTFFTW/lib ' +buildopts += 'FFLAGS="$F90FLAGS -DSP_LIBFFTW3 -DSP_LINUX -DSP_IFC -fpp -c -DUSE_MPI" LF="$F90FLAGS"' + +modextrapaths = {'PATH': ['spider/bin']} + +sanity_check_paths = { + 'files': ['spider/bin/spider'], + 'dirs': [''], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mt.eb b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mt.eb new file mode 100644 index 0000000000..3638191610 --- /dev/null +++ b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mt.eb @@ -0,0 +1,40 @@ +easyblock = 'ConfigureMake' + +name = 'SPIDER' +version = '22.10' +versionsuffix = '-mt' + +homepage = 'http://spider.wadsworth.org/spider_doc/spider/docs/spider.html' +description = """SPIDER (System for Processing Image Data from Electron microscopy and Related fields) is + an image processing system for electron microscopy.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'static': True, 'openmp': True} + +source_urls = ['http://spider.wadsworth.org/spider_doc/spider/download/'] +sources = ['spiderweb.%(version)s.tar.gz'] + +patches = ['SPIDER-%(version)s_fix-syntax-ifort.patch'] + +dependencies = [('FFTW', '3.3.4')] + +start_dir = 'spider/src' + +buildininstalldir = True + +parallel = 1 + +skipsteps = ['configure', 'install'] + +prebuildopts = "rm ../bin/spider* && rm ../src/spider*.[ao] && " +buildopts = '-f Makefile_linux COMP="$F90" EXE=spider FFTWLIBDIR=$EBROOTFFTW/lib ' +buildopts += 'FFLAGS="$F90FLAGS -DSP_LIBFFTW3 -DSP_LINUX -DSP_IFC -fpp -c -DSP_MP" LF="$F90FLAGS"' + +modextrapaths = {'PATH': ['spider/bin']} + +sanity_check_paths = { + 'files': ['spider/bin/spider'], + 'dirs': [''], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a.eb b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a.eb index f9744a6899..cf9bac0479 100644 --- a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a.eb @@ -27,9 +27,7 @@ skipsteps = ['configure', 'install'] prebuildopts = "rm ../bin/spider* && rm ../src/spider*.[ao] && " buildopts = '-f Makefile_linux COMP="$F90" EXE=spider FFTWLIBDIR=$EBROOTFFTW/lib ' -buildopts += 'FFLAGS="$F90FLAGS -WB -DSP_LIBFFTW3 -DSP_LINUX -DSP_IFC -fpp -c" LF="$F90FLAGS"' -#buildopts += 'FFLAGS="$F90FLAGS -DHAS_IEEE -DSP_LIBFFTW3 -DSP_LINUX -DSP_IFC -DSP_MP -c" LF="$F90FLAGS"' -#buildopts += 'FFLAGS="$F90FLAGS -DHAS_IEEE -DSP_LIBFFTW3 -DSP_LINUX -DSP_IFC -DUSE_MPI -c" LF="$F90FLAGS"' +buildopts += 'FFLAGS="$F90FLAGS -DSP_LIBFFTW3 -DSP_LINUX -DSP_IFC -fpp -c" LF="$F90FLAGS"' modextrapaths = {'PATH': ['spider/bin']} diff --git a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10_fix-syntax-ifort.patch b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10_fix-syntax-ifort.patch index 3f36cf0b41..57bb1f1a3d 100644 --- a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10_fix-syntax-ifort.patch +++ b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10_fix-syntax-ifort.patch @@ -69,3 +69,30 @@ $(AR) $(AFLAGS) $(LIB) $*.o - @\rm $*.o +# @\rm $*.o +--- spider/src/four_fq.f.orig 2015-05-21 10:37:01.109541000 +0200 ++++ spider/src/four_fq.f 2015-05-21 10:36:37.703908871 +0200 +@@ -1028,13 +1028,11 @@ + C BUTTERWORTH ELLIPTIC LOWPASS FILTER ********* + CALL ERRT(101, + & 'OPTION NOT IMPLEMENTED FOR VOLUMES',IOPT) +- RETURN + + ELSEIF (IOPT == 12) THEN + C BUTTERWORTH ELLIPTIC HIGHPASS FILTER ********* + CALL ERRT(101, + & 'OPTION NOT IMPLEMENTED FOR VOLUMES',IOPT) +- RETURN + + + ELSEIF (IOPT == 13) THEN +--- spider/src/lundoc.f.orig 2015-05-21 10:39:00.645329000 +0200 ++++ spider/src/lundoc.f 2015-05-21 10:38:42.870873287 +0200 +@@ -1252,7 +1252,7 @@ + INCLUDE 'CMBLOCK.INC' + + INTEGER :: NDOC,MAXKEYT,MAXREGT,KEYSINUSE,IRTFLG +- LOGICAL :: SAYIT ++ LOGICAL :: SAYIT, ENDFILE + + REAL, POINTER :: IPQ(:) + CHARACTER(LEN=80) :: RECLIN ! ONLY NEEDS START -- GitLab From 0891d0214499d4bdbd11622f1a28da2bd075d69e Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 10:41:25 +0200 Subject: [PATCH 1179/1217] make FDS patch compatible with recent versions --- easybuild/easyconfigs/f/FDS/FDS-r18915_makefile.patch | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/f/FDS/FDS-r18915_makefile.patch b/easybuild/easyconfigs/f/FDS/FDS-r18915_makefile.patch index d9c7c2a315..d7106bff9f 100644 --- a/easybuild/easyconfigs/f/FDS/FDS-r18915_makefile.patch +++ b/easybuild/easyconfigs/f/FDS/FDS-r18915_makefile.patch @@ -1,5 +1,5 @@ ---- makefile (revision 18916) -+++ makefile (working copy) +--- FDS_Compilation/makefile.orig (revision 18916) ++++ FDS_Compilation/makefile (working copy) @@ -29,9 +29,9 @@ # General Purpose Rules -- GitLab From 9519137d051e2f69640db52d87cfa9f5fdd412b6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 10:42:06 +0200 Subject: [PATCH 1180/1217] {phys}[intel/2015a] FDS r17534 + rr22681 --- .../f/FDS/FDS-r17534-intel-2015a.eb | 32 +++++++++++++++++++ .../f/FDS/FDS-r17534_makefile.patch | 16 ++++++++++ .../f/FDS/FDS-r22681-intel-2015a.eb | 30 +++++++++++++++++ 3 files changed, 78 insertions(+) create mode 100644 easybuild/easyconfigs/f/FDS/FDS-r17534-intel-2015a.eb create mode 100644 easybuild/easyconfigs/f/FDS/FDS-r17534_makefile.patch create mode 100644 easybuild/easyconfigs/f/FDS/FDS-r22681-intel-2015a.eb diff --git a/easybuild/easyconfigs/f/FDS/FDS-r17534-intel-2015a.eb b/easybuild/easyconfigs/f/FDS/FDS-r17534-intel-2015a.eb new file mode 100644 index 0000000000..2179b3462c --- /dev/null +++ b/easybuild/easyconfigs/f/FDS/FDS-r17534-intel-2015a.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'FDS' +version = 'r17534' + +homepage = 'https://code.google.com/p/fds-smv/' +description = """Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, + with an emphasis on smoke and heat transport from fires.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'usempi': True} + +sources = [SOURCE_TAR_GZ] +patches = ['FDS-%(version)s_makefile.patch'] + +unpack_options = '--strip-components=1' + +start_dir = 'FDS_Compilation' + +parallel = 1 + +# just run make in the install dir +skipsteps = ['configure', 'install'] +buildininstalldir = True + +modextrapaths = {'PATH': 'FDS_Compilation'} + +sanity_check_paths = { + 'files': ['FDS_Compilation/fds'], + 'dirs': [], +} +moduleclass = 'phys' diff --git a/easybuild/easyconfigs/f/FDS/FDS-r17534_makefile.patch b/easybuild/easyconfigs/f/FDS/FDS-r17534_makefile.patch new file mode 100644 index 0000000000..dea4f7695f --- /dev/null +++ b/easybuild/easyconfigs/f/FDS/FDS-r17534_makefile.patch @@ -0,0 +1,16 @@ +diff -ru fds-r17534.orig/FDS_Compilation/makefile fds-r17534/FDS_Compilation/makefile +--- fds-r17534.orig/FDS_Compilation/makefile 2013-11-21 17:36:53.000000000 +0100 ++++ fds-r17534/FDS_Compilation/makefile 2015-05-19 13:01:04.892548269 +0200 +@@ -29,9 +29,9 @@ + + # General Purpose Rules + +-no_target: +- @echo \******** You did not specify a make target \******** +- @echo Please read the comments at the top of the makefile ++no_target: FCOMPL = $(F90) ++no_target: setup $(obj_serial) ++ $(FCOMPL) $(FFLAGS) $(LFLAGS) -o fds $(obj_serial) + + setup: + %.o : %.mod diff --git a/easybuild/easyconfigs/f/FDS/FDS-r22681-intel-2015a.eb b/easybuild/easyconfigs/f/FDS/FDS-r22681-intel-2015a.eb new file mode 100644 index 0000000000..0b9177003e --- /dev/null +++ b/easybuild/easyconfigs/f/FDS/FDS-r22681-intel-2015a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'FDS' +version = 'r22681' + +homepage = 'https://code.google.com/p/fds-smv/' +description = """Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, + with an emphasis on smoke and heat transport from fires.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'usempi': True} + +sources = [SOURCE_TAR_GZ] +patches = ['FDS-r18915_makefile.patch'] + +unpack_options = '--strip-components=1' + +start_dir = 'FDS_Compilation' + +# just run make in the install dir +skipsteps = ['configure', 'install'] +buildininstalldir = True + +modextrapaths = {'PATH': 'FDS_Compilation'} + +sanity_check_paths = { + 'files': ['FDS_Compilation/fds'], + 'dirs': [], +} +moduleclass = 'phys' -- GitLab From 65f9f761750f7e2fd484d4da6704cb5aba44af38 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 11:25:23 +0200 Subject: [PATCH 1181/1217] {vis}[intel/2015a] matplotlib 1.4.3 (w/ Python 3.4.3) --- ...tplotlib-1.4.3-intel-2015a-Python-3.4.3.eb | 38 +++++++++++++++++++ 1 file changed, 38 insertions(+) create mode 100644 easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-3.4.3.eb diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-3.4.3.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-3.4.3.eb new file mode 100644 index 0000000000..147a7f4db6 --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-3.4.3.eb @@ -0,0 +1,38 @@ +easyblock = "PythonPackage" + +name = 'matplotlib' +version = '1.4.3' + +homepage = 'http://matplotlib.org' +description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of + hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python + and ipython shell, web application servers, and six graphical user interface toolkits.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +patches = [('matplotlib-%(version)s_Qhull-intel-fix.patch')] + +python = "Python" +pythonversion = '3.4.3' +pyshortver = ".".join(pythonversion.split(".")[:-1]) + +versionsuffix = "-%s-%s" % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('freetype', '2.5.5'), + ('libpng', '1.6.16'), +] + +# is this actually needed? the PythonPackage will check if import matplotlib succeeds, which is as good as this? +pyprefix = 'lib/python%s/site-packages' % pyshortver +eggname = 'matplotlib-%%(version)s-py%s-linux-x86_64.egg' % pyshortver +sanity_check_paths = { + 'files': [], + 'dirs': [('%s/%%(name)s' % pyprefix, '%s/%s' % (pyprefix, eggname))], +} + +moduleclass = 'vis' -- GitLab From acdd3c93de06322ccdce81b8fb9926564d4e9063 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 11:38:09 +0200 Subject: [PATCH 1182/1217] remove useless comment --- .../m/matplotlib/matplotlib-1.3.1-ictce-4.1.13-Python-2.7.6.eb | 1 - .../m/matplotlib/matplotlib-1.3.1-ictce-5.5.0-Python-2.7.6.eb | 1 - .../m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb | 1 - .../m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb | 1 - .../m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-3.4.3.eb | 1 - 5 files changed, 5 deletions(-) diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.3.1-ictce-4.1.13-Python-2.7.6.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.3.1-ictce-4.1.13-Python-2.7.6.eb index d97e421867..6a25c33b0c 100644 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.3.1-ictce-4.1.13-Python-2.7.6.eb +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.3.1-ictce-4.1.13-Python-2.7.6.eb @@ -26,7 +26,6 @@ dependencies = [ ('libpng', '1.6.6'), ] -# is this actually needed? the PythonPackage will check if import matplotlib succeeds, which is as good as this? pyprefix = 'lib/python%s/site-packages' % pyshortver eggname = 'matplotlib-%%(version)s-py%s-linux-x86_64.egg' % pyshortver sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.3.1-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.3.1-ictce-5.5.0-Python-2.7.6.eb index 0e33120d40..0397044fea 100644 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.3.1-ictce-5.5.0-Python-2.7.6.eb +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.3.1-ictce-5.5.0-Python-2.7.6.eb @@ -26,7 +26,6 @@ dependencies = [ ('libpng', '1.6.9'), ] -# is this actually needed? the PythonPackage will check if import matplotlib succeeds, which is as good as this? pyprefix = 'lib/python%s/site-packages' % pyshortver eggname = 'matplotlib-%%(version)s-py%s-linux-x86_64.egg' % pyshortver sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb index da06531921..8072aaea0f 100644 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-foss-2015a-Python-2.7.9.eb @@ -25,7 +25,6 @@ dependencies = [ ('libpng', '1.6.16'), ] -# is this actually needed? the PythonPackage will check if import matplotlib succeeds, which is as good as this? pyprefix = 'lib/python%s/site-packages' % pyshortver eggname = 'matplotlib-%%(version)s-py%s-linux-x86_64.egg' % pyshortver sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb index 3a24c2da81..25762ccdf7 100644 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-2.7.9.eb @@ -27,7 +27,6 @@ dependencies = [ ('libpng', '1.6.16'), ] -# is this actually needed? the PythonPackage will check if import matplotlib succeeds, which is as good as this? pyprefix = 'lib/python%s/site-packages' % pyshortver eggname = 'matplotlib-%%(version)s-py%s-linux-x86_64.egg' % pyshortver sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-3.4.3.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-3.4.3.eb index 147a7f4db6..5849d559f7 100644 --- a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-3.4.3.eb +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.4.3-intel-2015a-Python-3.4.3.eb @@ -27,7 +27,6 @@ dependencies = [ ('libpng', '1.6.16'), ] -# is this actually needed? the PythonPackage will check if import matplotlib succeeds, which is as good as this? pyprefix = 'lib/python%s/site-packages' % pyshortver eggname = 'matplotlib-%%(version)s-py%s-linux-x86_64.egg' % pyshortver sanity_check_paths = { -- GitLab From 9880d63fb8810ac68b62411fcfd610b43b6e7830 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 11:49:17 +0200 Subject: [PATCH 1183/1217] rename to R-bundle, depend on -extra bundle --- ...undle-20150520-intel-2015a-R-3.1.3-devtools.eb} | 14 ++++---------- 1 file changed, 4 insertions(+), 10 deletions(-) rename easybuild/easyconfigs/r/{R-bundles/R-bundles-20150520-intel-2015a-R-3.1.3-devtools.eb => R-bundle/R-bundle-20150520-intel-2015a-R-3.1.3-devtools.eb} (77%) diff --git a/easybuild/easyconfigs/r/R-bundles/R-bundles-20150520-intel-2015a-R-3.1.3-devtools.eb b/easybuild/easyconfigs/r/R-bundle/R-bundle-20150520-intel-2015a-R-3.1.3-devtools.eb similarity index 77% rename from easybuild/easyconfigs/r/R-bundles/R-bundles-20150520-intel-2015a-R-3.1.3-devtools.eb rename to easybuild/easyconfigs/r/R-bundle/R-bundle-20150520-intel-2015a-R-3.1.3-devtools.eb index 8cb259acf8..d4a983401d 100644 --- a/easybuild/easyconfigs/r/R-bundles/R-bundles-20150520-intel-2015a-R-3.1.3-devtools.eb +++ b/easybuild/easyconfigs/r/R-bundle/R-bundle-20150520-intel-2015a-R-3.1.3-devtools.eb @@ -1,10 +1,9 @@ easyblock = 'Bundle' -name = 'R-bundles' +name = 'R-bundle' version = '20150520' -bundlename = 'devtools' rver = '3.1.3' -versionsuffix = '-R-%s-%s' % (rver, bundlename) +versionsuffix = '-R-%s-devtools' % rver homepage = 'http://www.r-project.org/' description = """R is a free software environment for statistical computing and graphics.""" @@ -17,30 +16,25 @@ exts_filter = ("R -q --no-save", "library(%(ext_name)s)") dependencies = [ ('R', rver), - ('cURL', '7.40.0'), - ('libxml2', '2.9.2'), + ('R-bundle', '20150323-R-%s-extra' % rver), ] -name_tmpl = '%(name)s_%(version)s.tar.gz' ext_options = { 'source_urls': [ 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive 'http://cran.r-project.org/src/contrib/', # current version of packages 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages ], - 'source_tmpl': name_tmpl, + 'source_tmpl': '%(name)s_%(version)s.tar.gz' } # !! order of packages is important !! exts_list = [ - ('XML', '3.98-1.1', ext_options), ('memoise', '0.2.1', ext_options), ('whisker', '0.3-2', ext_options), ('rstudioapi', '0.3.1', ext_options), ('roxygen2', '4.1.1', ext_options), ('git2r', '0.10.1', ext_options), - ('RCurl', '1.95-4.6', ext_options), - ('httr', '0.6.1', ext_options), ('rversions', '1.0.0', ext_options), ('devtools', '1.8.0', ext_options), ] -- GitLab From ed31db7d4b72bef55e57e552e3daa64ead13efac Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 12:20:31 +0200 Subject: [PATCH 1184/1217] rename to R-bundle, move vegan/widgetTools extensions to R easyconfig --- ...dle-20150323-intel-2015a-R-3.1.3-extra.eb} | 10 ++-- .../R-extra/R-extra-3.1.2-1.0.0-foss-2015a.eb | 47 ------------------- .../easyconfigs/r/R/R-3.1.3-intel-2015a.eb | 2 + 3 files changed, 5 insertions(+), 54 deletions(-) rename easybuild/easyconfigs/r/{R-extra/R-extra-20150323-intel-2015a-R-3.1.3.eb => R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb} (91%) delete mode 100644 easybuild/easyconfigs/r/R-extra/R-extra-3.1.2-1.0.0-foss-2015a.eb diff --git a/easybuild/easyconfigs/r/R-extra/R-extra-20150323-intel-2015a-R-3.1.3.eb b/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb similarity index 91% rename from easybuild/easyconfigs/r/R-extra/R-extra-20150323-intel-2015a-R-3.1.3.eb rename to easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb index 6cd16e2bf9..108db2e37d 100644 --- a/easybuild/easyconfigs/r/R-extra/R-extra-20150323-intel-2015a-R-3.1.3.eb +++ b/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb @@ -1,9 +1,9 @@ easyblock = 'Bundle' -name = 'R-extra' +name = 'R-bundle' version = '20150323' rver = '3.1.3' -versionsuffix = '-R-%s' % rver +versionsuffix = '-R-%s-extra' % rver homepage = 'http://www.r-project.org/' description = """R is a free software environment for statistical computing and graphics.""" @@ -16,8 +16,6 @@ exts_filter = ("R -q --no-save", "library(%(ext_name)s)") dependencies = [ ('R', rver), - ('Tcl', '8.6.4'), - ('Tk', '8.6.4', '-no-X11'), ('cURL', '7.41.0'), ('libxml2', '2.9.2'), ] @@ -43,11 +41,9 @@ bioconductor_options = { # !! order of packages is important !! exts_list = [ - ('vegan', '2.2-1', ext_options), # requires Tcl/Tk - ('widgetTools', '1.44.0', bioconductor_options), # requires Tcl/Tk ('RCurl', '1.95-4.5', ext_options), # requires cURL ('XML', '3.98-1.1', ext_options), # requires libxml2 - # extensions below requires one or more extensions that have an external dependency listed above + # extensions below require one or more extensions that have an external dependency listed above ('picante', '1.6-2', ext_options), ('spacodiR', '0.13.0115', ext_options), ('picante', '1.6-2', ext_options), diff --git a/easybuild/easyconfigs/r/R-extra/R-extra-3.1.2-1.0.0-foss-2015a.eb b/easybuild/easyconfigs/r/R-extra/R-extra-3.1.2-1.0.0-foss-2015a.eb deleted file mode 100644 index e71e3abf1d..0000000000 --- a/easybuild/easyconfigs/r/R-extra/R-extra-3.1.2-1.0.0-foss-2015a.eb +++ /dev/null @@ -1,47 +0,0 @@ -easyblock = 'Bundle' - -name = 'R-extra' -rver = '3.1.2' -version = '%s-1.0.0' % rver - -homepage = 'http://www.r-project.org/' -description = """R is a free software environment for statistical computing and graphics.""" - -toolchain = {'name': 'foss', 'version': '2015a'} - -# these are extensions for R -exts_defaultclass = 'RPackage' -exts_filter = ("R -q --no-save", "library(%(ext_name)s)") - -dependencies = [ - ('R', rver), - ('GMP', '6.0.0a'), # for gmp -] - -name_tmpl = '%(name)s_%(version)s.tar.gz' -ext_options = { - 'source_urls': [ - 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive - 'http://cran.r-project.org/src/contrib/', # current version of packages - 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages - ], - 'source_tmpl': name_tmpl, -} -# Bioconductor packages have a different download url -bioconductor_options = { - 'source_urls': [ - 'http://www.bioconductor.org/packages/3.0/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/3.0/data/annotation/src/contrib/', - 'http://www.bioconductor.org/packages/3.0/data/experiment/src/contrib/', - ], - 'source_tmpl': name_tmpl, -} - -# !! order of packages is important !! -exts_list = [ - ('gmp', '0.5-12', ext_options), -] - -modextrapaths = {'R_LIBS': ''} - -moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb index fefd97519c..b39267177d 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb @@ -380,6 +380,8 @@ exts_list = [ ('xlsxjars', '0.6.1', ext_options), ('xlsx', '0.5.7', ext_options), ('Rsubread', '1.16.1', bioconductor_options), + ('vegan', '2.2-1', ext_options), # requires Tcl/Tk + ('widgetTools', '1.44.0', bioconductor_options), # requires Tcl/Tk ] moduleclass = 'lang' -- GitLab From e6b4b18c41bf0c69fc9c28be5d0df1c98807a8aa Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 13:06:12 +0200 Subject: [PATCH 1185/1217] fix remark --- easybuild/easyconfigs/c/cURL/cURL-7.41.0-intel-2015a.eb | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.41.0-intel-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.41.0-intel-2015a.eb index 7c9526c34b..4e2d371a71 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.41.0-intel-2015a.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.41.0-intel-2015a.eb @@ -16,10 +16,9 @@ toolchain = {'name': 'intel', 'version': '2015a'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] -# dependencies = [('OpenSSL', '1.0.1m')] - osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] +# dependencies = [('OpenSSL', '1.0.1m')] # configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { -- GitLab From f3ffb1ab5ae2797d56b71885ff0dc5992d6bcb27 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 16:01:00 +0200 Subject: [PATCH 1186/1217] {*}[foss/2015.05] Python 2.7.9 + Boost 1.58.0 + deps --- .../Boost-1.58.0-foss-2015.05-Python-2.7.9.eb | 26 ++++ .../b/bzip2/bzip2-1.0.6-foss-2015.05.eb | 16 +++ .../libreadline-6.3-foss-2015.05.eb | 28 +++++ .../n/ncurses/ncurses-5.9-foss-2015.05.eb | 16 +++ .../p/Python/Python-2.7.9-foss-2015.05.eb | 116 ++++++++++++++++++ .../s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb | 39 ++++++ .../t/Tcl/Tcl-8.6.3-foss-2015.05.eb | 26 ++++ .../z/zlib/zlib-1.2.8-foss-2015.05.eb | 23 ++++ 8 files changed, 290 insertions(+) create mode 100644 easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015.05-Python-2.7.9.eb create mode 100644 easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2015.05.eb create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015.05.eb create mode 100644 easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb create mode 100644 easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015.05.eb create mode 100644 easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015.05.eb diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015.05-Python-2.7.9.eb b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015.05-Python-2.7.9.eb new file mode 100644 index 0000000000..99e816f731 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015.05-Python-2.7.9.eb @@ -0,0 +1,26 @@ +# Built with EasyBuild version 2.2.0dev on 2015-05-20_23-09-52 +name = 'Boost' +version = '1.58.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'foss', 'version': '2015.05'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +pythonversion = '2.7.9' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2015.05.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2015.05.eb new file mode 100644 index 0000000000..94eb15f42f --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2015.05.eb @@ -0,0 +1,16 @@ +# Built with EasyBuild version 2.2.0dev on 2015-05-20_22-07-07 +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'foss', 'version': '2015.05'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb new file mode 100644 index 0000000000..09db15bea5 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb @@ -0,0 +1,28 @@ +# Built with EasyBuild version 2.2.0dev on 2015-05-20_22-10-20 +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'foss', 'version': '2015.05'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb new file mode 100644 index 0000000000..46d3cd55d8 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb @@ -0,0 +1,16 @@ +# Built with EasyBuild version 2.2.0dev on 2015-05-20_22-09-34 +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'foss', 'version': '2015.05'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015.05.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015.05.eb new file mode 100644 index 0000000000..2e2b6decfa --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015.05.eb @@ -0,0 +1,116 @@ +# Built with EasyBuild version 2.2.0dev on 2015-05-20_22-50-18 +name = 'Python' +version = '2.7.9' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'foss', 'version': '2015.05'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.1' +scipyversion = '0.14.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('SQLite', '3.8.8.1'), +# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# order is important! +# package versions updated Jan 19th 2015 +exts_list = [ + ('setuptools', '11.3.1', { + 'source_urls': ['http://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '6.0.6', { + 'source_urls': ['http://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.4', { + 'source_urls': ['http://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['http://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['http://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.2.1', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('pbr', '0.10.8', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + }), + ('lockfile', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.21.2', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.0', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['http://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.1', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.11', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.15.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.13', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), + ('mock', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], + }), + ('pytz', '2014.10', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], + }), + ('pandas', '0.16.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb new file mode 100644 index 0000000000..a84b2916e1 --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb @@ -0,0 +1,39 @@ +# Built with EasyBuild version 2.2.0dev on 2015-05-20_22-17-48 +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.8.8.1' + +homepage = 'http://www.sqlite.org/' +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'foss', 'version': '2015.05'} + +# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz +source_urls = ['http://www.sqlite.org/2015/'] +version_str = '%(version_major)s' + ''.join('%02d' % int(x) for x in version.split('.')[1:]) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] + +dependencies = [ + ('libreadline', '6.3'), + ('Tcl', '8.6.3'), +] + +sanity_check_paths = { + 'files': ['bin/sqlite3'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015.05.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015.05.eb new file mode 100644 index 0000000000..c4895ce18b --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015.05.eb @@ -0,0 +1,26 @@ +# Built with EasyBuild version 2.2.0dev on 2015-05-20_22-16-41 +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.3' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'foss', 'version': '2015.05'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +dependencies = [ + ('zlib', '1.2.8'), +] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015.05.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015.05.eb new file mode 100644 index 0000000000..6cb32ff060 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015.05.eb @@ -0,0 +1,23 @@ +# Built with EasyBuild version 2.2.0dev on 2015-05-20_22-07-46 +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'foss', 'version': '2015.05'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'dirs': [], +} + +moduleclass = 'lib' -- GitLab From 5981713451bb61aea69314dfd0e2dd5c45ddea0a Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 16:31:09 +0200 Subject: [PATCH 1187/1217] SPIDER: update patch, use _mp Makefile for -mp/-mpi variants --- .../s/SPIDER/SPIDER-22.10-intel-2015a-mpi.eb | 2 +- .../s/SPIDER/SPIDER-22.10-intel-2015a-mt.eb | 2 +- .../SPIDER-22.10_fix-syntax-ifort.patch | 116 +++++++++++++++++- 3 files changed, 112 insertions(+), 8 deletions(-) diff --git a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mpi.eb b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mpi.eb index 051f460b6a..1a775fa535 100644 --- a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mpi.eb +++ b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mpi.eb @@ -27,7 +27,7 @@ parallel = 1 skipsteps = ['configure', 'install'] prebuildopts = "rm ../bin/spider* && rm ../src/spider*.[ao] && " -buildopts = '-f Makefile_linux COMP="$F90" EXE=spider FFTWLIBDIR=$EBROOTFFTW/lib ' +buildopts = '-f Makefile_linux_mp COMP="$F90" EXE=spider FFTWLIBDIR=$EBROOTFFTW/lib ' buildopts += 'FFLAGS="$F90FLAGS -DSP_LIBFFTW3 -DSP_LINUX -DSP_IFC -fpp -c -DUSE_MPI" LF="$F90FLAGS"' modextrapaths = {'PATH': ['spider/bin']} diff --git a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mt.eb b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mt.eb index 3638191610..a747562bcb 100644 --- a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mt.eb +++ b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mt.eb @@ -27,7 +27,7 @@ parallel = 1 skipsteps = ['configure', 'install'] prebuildopts = "rm ../bin/spider* && rm ../src/spider*.[ao] && " -buildopts = '-f Makefile_linux COMP="$F90" EXE=spider FFTWLIBDIR=$EBROOTFFTW/lib ' +buildopts = '-f Makefile_linux_mp COMP="$F90" EXE=spider FFTWLIBDIR=$EBROOTFFTW/lib ' buildopts += 'FFLAGS="$F90FLAGS -DSP_LIBFFTW3 -DSP_LINUX -DSP_IFC -fpp -c -DSP_MP" LF="$F90FLAGS"' modextrapaths = {'PATH': ['spider/bin']} diff --git a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10_fix-syntax-ifort.patch b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10_fix-syntax-ifort.patch index 57bb1f1a3d..957ed589cf 100644 --- a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10_fix-syntax-ifort.patch +++ b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10_fix-syntax-ifort.patch @@ -1,5 +1,7 @@ +fix syntax issues that trip Intel Fortran compiler (ifort) +author: Kenneth Hoste (HPC-UGent) --- spider/src/copyfromtif.f.orig 2014-11-20 17:31:58.000000000 +0100 -+++ spider/src/copyfromtif.f 2015-05-20 20:18:45.688100002 +0200 ++++ spider/src/copyfromtif.f 2015-05-21 12:04:17.049891641 +0200 @@ -88,7 +88,7 @@ INTEGER(KIND=1), ALLOCATABLE :: I1VALS(:) INTEGER(KIND=4), ALLOCATABLE :: I4VALS(:) @@ -18,15 +20,18 @@ IF (IRTFLG .NE. 0) THEN CALL ERRT(46,'COPYFROMTIF; CVAL...',ICVAL_LEN) -@@ -432,7 +432,7 @@ +@@ -432,9 +432,9 @@ GOTRESU = .TRUE. ELSEIF (ITAG == 306) THEN - CDATE = CVAL(1)(1:22) + CDATE = CVAL(1:22) c IF (DEBUG) WRITE(NOUT,'(2X,A,1X,200A)')'DATE & TIME:', - c & CVAL(1)(1:ICOUNT) +-c & CVAL(1)(1:ICOUNT) ++c & CVAL(1:ICOUNT) GOTDATE = .TRUE. + + ELSE --- spider/src/copypos.f.orig 2015-05-20 21:21:12.693293000 +0200 +++ spider/src/copypos.f 2015-05-20 21:21:37.499077116 +0200 @@ -269,7 +269,7 @@ @@ -85,14 +90,113 @@ ELSEIF (IOPT == 13) THEN ---- spider/src/lundoc.f.orig 2015-05-21 10:39:00.645329000 +0200 -+++ spider/src/lundoc.f 2015-05-21 10:38:42.870873287 +0200 +--- spider/src/spider.f.orig 2015-04-21 15:30:40.000000000 +0200 ++++ spider/src/spider.f 2015-05-21 15:03:36.159704166 +0200 +@@ -195,9 +195,15 @@ + + #ifndef USE_MPI + #ifndef __APPLE__ ++#ifdef SP_IFC ++ isiz1 = kmp_get_stacksize() ++ CALL kmp_set_stacksize(65536) ++ isiz2 = kmp_get_stacksize() ++#else + isiz1 = omp_get_stack_size() + CALL omp_set_stack_size(65536) + isiz2 = omp_get_stack_size() ++#endif + !write(6,*) ' OMP Stack size: ',isiz1,' -->',isiz2 + + #endif +--- spider/src/lundoc.f.orig 2015-03-27 14:08:10.000000000 +0100 ++++ spider/src/lundoc.f 2015-05-21 15:26:30.008871936 +0200 @@ -1252,7 +1252,7 @@ INCLUDE 'CMBLOCK.INC' INTEGER :: NDOC,MAXKEYT,MAXREGT,KEYSINUSE,IRTFLG - LOGICAL :: SAYIT -+ LOGICAL :: SAYIT, ENDFILE ++ LOGICAL :: SAYIT, EOF REAL, POINTER :: IPQ(:) CHARACTER(LEN=80) :: RECLIN ! ONLY NEEDS START +@@ -1319,15 +1319,15 @@ + BACKSPACE(NDOC) ! REREAD LINE + READ(NDOC,*,END=100,IOSTAT=IER) RECLIN + +- ENDFILE = .TRUE. ++ EOF = .TRUE. + READ(NDOC,*,END=100,IOSTAT=IER) NKEY,NREGPLINE +- ENDFILE = .FALSE. ++ EOF = .FALSE. + ENDIF + + +- 100 CALL BCAST_MPI('LUNDOCINFO','ENDFILE',ENDFILE,1,'L',ICOMM) ++ 100 CALL BCAST_MPI('LUNDOCINFO','EOF',EOF,1,'L',ICOMM) + CALL BCAST_MPI('LUNDOCINFO','IER',IER,1,'I',ICOMM) +- IF (ENDFILE) GOTO 799 ++ IF (EOF) GOTO 799 + + CALL BCAST_MPI('LUNDOCINFO','NKEY',NKEY,1,'I',ICOMM) + CALL BCAST_MPI('LUNDOCINFO','NREGPLINE',NREGPLINE,1, +@@ -1434,7 +1434,7 @@ + + REAL :: PLIST(*) + CHARACTER(LEN=180) :: RECLIN +- LOGICAL :: TILLEND ++ LOGICAL :: TILLEND, EOF, ERRFILE + + CALL SET_MPI(ICOMM,MYPID,MPIERR) ! SETS ICOMM AND MYPID + +@@ -1464,18 +1464,18 @@ + 10 CONTINUE + IF (MYPID == 0) THEN + ERRFILE = .TRUE. +- ENDFILE = .TRUE. ++ EOF = .TRUE. + READ (LUNDOC,81,ERR=100,END=200) RECLIN + 81 FORMAT(A120) + ERRFILE = .FALSE. +- ENDFILE = .FALSE. ++ EOF = .FALSE. + ENDIF + + 100 CALL BCAST_MPI('LUNDOCGETCOM','ERRFILE',ERRFILE,1,'L',ICOMM) + IF (ERRFILE) GOTO 998 + +-200 CALL BCAST_MPI('LUNDOCGETCOM','ENDFILE',ENDFILE,1,'L',ICOMM) +- IF (ENDFILE) GOTO 997 ++200 CALL BCAST_MPI('LUNDOCGETCOM','EOF',EOF,1,'L',ICOMM) ++ IF (EOF) GOTO 997 + + CALL BCAST_MPI('LUNDOCGETCOM','RECLIN',RECLIN,180,'C',ICOMM) + +@@ -1580,7 +1580,7 @@ + CHARACTER *120 RECLIN + #ifdef USE_MPI + include 'mpif.h' +- LOGICAL ENDFILE, ERRFILE ++ LOGICAL EOF, ERRFILE + ICOMM = MPI_COMM_WORLD + CALL MPI_COMM_RANK(ICOMM, MYPID, MPIERR) + #else +@@ -1595,15 +1595,15 @@ + #ifdef USE_MPI + 10 IF (MYPID == 0) THEN + ERRFILE = .TRUE. +- ENDFILE = .TRUE. ++ EOF = .TRUE. + READ (LUNDOC,81,ERR=100,END=100) RECLIN + ERRFILE = .FALSE. +- ENDFILE = .FALSE. ++ EOF = .FALSE. + ENDIF + +-100 CALL BCAST_MPI('LUNDOCSAYHDR','ENDFILE',ENDFILE,1,'L',ICOMM) ++100 CALL BCAST_MPI('LUNDOCSAYHDR','EOF',EOF,1,'L',ICOMM) + CALL BCAST_MPI('LUNDOCSAYHDR','ERRFILE',ERRFILE,1,'L',ICOMM) +- IF (ENDFILE .OR. ERRFILE) GOTO 999 ++ IF (EOF .OR. ERRFILE) GOTO 999 + + CALL BCAST_MPI('LUNDOCSAYHDR','RECLIN',RECLIN,120,'C',ICOMM) + #else -- GitLab From 7962d2cba1c7cd60964509de65f0b96a257106ec Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 16:35:47 +0200 Subject: [PATCH 1188/1217] add patch for installing paycheck as Py3 extension --- .../p/Python/Python-3.4.3-intel-2015a.eb | 3 +++ ...aycheck-1.0.2_setup-open-README-utf8.patch | 22 +++++++++++++++++++ 2 files changed, 25 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/paycheck-1.0.2_setup-open-README-utf8.patch diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb index c5e5b4ddcb..d79f2b54ad 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb @@ -55,6 +55,9 @@ exts_list = [ }), ('paycheck', '1.0.2', { 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], + 'patches': [ + 'paycheck-1.0.2_setup-open-README-utf8.patch', + ], }), ('argparse', '1.3.0', { 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], diff --git a/easybuild/easyconfigs/p/Python/paycheck-1.0.2_setup-open-README-utf8.patch b/easybuild/easyconfigs/p/Python/paycheck-1.0.2_setup-open-README-utf8.patch new file mode 100644 index 0000000000..193336def4 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/paycheck-1.0.2_setup-open-README-utf8.patch @@ -0,0 +1,22 @@ +open README file with utf-8 encoding, to avoid error like: +UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 577: ordinal not in range(128) +author: Kenneth Hoste (HPC-UGent) +--- paycheck-1.0.2/setup.py.orig 2015-05-21 16:09:24.300074046 +0200 ++++ paycheck-1.0.2/setup.py 2015-05-21 16:11:43.503945542 +0200 +@@ -1,6 +1,7 @@ + from distutils.cmd import Command + from distutils.core import setup + ++import codecs + import sys + if sys.version_info >= (3, 0): + try: +@@ -24,7 +25,7 @@ + name = 'paycheck', + version ='1.0.2', + description ='A Python QuickCheck implementation', +- long_description = open("README.txt").read(), ++ long_description = codecs.open("README.txt", encoding='utf-8').read(), + author ='Mark Chadwick', + author_email ='mark.chadwick@gmail.com', + maintainer ='Gregory Crosswhite', -- GitLab From 2294aff5b5e3a456e7598f75d227a55b0454b5c2 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 16:38:30 +0200 Subject: [PATCH 1189/1217] fix remark --- .../b/Boost/Boost-1.58.0-foss-2015.05-Python-2.7.9.eb | 1 - easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2015.05.eb | 1 - .../easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb | 1 - easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb | 1 - easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015.05.eb | 1 - easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb | 1 - easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015.05.eb | 1 - easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015.05.eb | 1 - 8 files changed, 8 deletions(-) diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015.05-Python-2.7.9.eb b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015.05-Python-2.7.9.eb index 99e816f731..24316a807f 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015.05-Python-2.7.9.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015.05-Python-2.7.9.eb @@ -1,4 +1,3 @@ -# Built with EasyBuild version 2.2.0dev on 2015-05-20_23-09-52 name = 'Boost' version = '1.58.0' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2015.05.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2015.05.eb index 94eb15f42f..1c3c8d1851 100644 --- a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2015.05.eb +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2015.05.eb @@ -1,4 +1,3 @@ -# Built with EasyBuild version 2.2.0dev on 2015-05-20_22-07-07 name = 'bzip2' version = '1.0.6' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb index 09db15bea5..c23d9ba711 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb @@ -1,4 +1,3 @@ -# Built with EasyBuild version 2.2.0dev on 2015-05-20_22-10-20 easyblock = 'ConfigureMake' name = 'libreadline' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb index 46d3cd55d8..63b54fa7c4 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb @@ -1,4 +1,3 @@ -# Built with EasyBuild version 2.2.0dev on 2015-05-20_22-09-34 name = 'ncurses' version = '5.9' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015.05.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015.05.eb index 2e2b6decfa..ce15e506fc 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015.05.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015.05.eb @@ -1,4 +1,3 @@ -# Built with EasyBuild version 2.2.0dev on 2015-05-20_22-50-18 name = 'Python' version = '2.7.9' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb index a84b2916e1..5e77859d07 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.8.1-foss-2015.05.eb @@ -1,4 +1,3 @@ -# Built with EasyBuild version 2.2.0dev on 2015-05-20_22-17-48 ## # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015.05.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015.05.eb index c4895ce18b..bd202e0e1b 100644 --- a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015.05.eb +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.3-foss-2015.05.eb @@ -1,4 +1,3 @@ -# Built with EasyBuild version 2.2.0dev on 2015-05-20_22-16-41 easyblock = 'ConfigureMake' name = 'Tcl' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015.05.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015.05.eb index 6cb32ff060..7668682872 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015.05.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015.05.eb @@ -1,4 +1,3 @@ -# Built with EasyBuild version 2.2.0dev on 2015-05-20_22-07-46 easyblock = 'ConfigureMake' name = 'zlib' -- GitLab From 9884eda25ed3c0acd92494e121676cf6519bffae Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 17:14:31 +0200 Subject: [PATCH 1190/1217] fix mpi variant of SPIDER --- .../easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mpi.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mpi.eb b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mpi.eb index 1a775fa535..cdcacc4631 100644 --- a/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mpi.eb +++ b/easybuild/easyconfigs/s/SPIDER/SPIDER-22.10-intel-2015a-mpi.eb @@ -9,7 +9,7 @@ description = """SPIDER (System for Processing Image Data from Electron microsco an image processing system for electron microscopy.""" toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'static': True, 'usempi': True} +toolchainopts = {'usempi': True} source_urls = ['http://spider.wadsworth.org/spider_doc/spider/download/'] sources = ['spiderweb.%(version)s.tar.gz'] @@ -28,7 +28,7 @@ skipsteps = ['configure', 'install'] prebuildopts = "rm ../bin/spider* && rm ../src/spider*.[ao] && " buildopts = '-f Makefile_linux_mp COMP="$F90" EXE=spider FFTWLIBDIR=$EBROOTFFTW/lib ' -buildopts += 'FFLAGS="$F90FLAGS -DSP_LIBFFTW3 -DSP_LINUX -DSP_IFC -fpp -c -DUSE_MPI" LF="$F90FLAGS"' +buildopts += 'FFLAGS="$F90FLAGS -DSP_LIBFFTW3 -DSP_LINUX -DSP_IFC -fpp -c -DUSE_MPI" LF="$F90FLAGS -ldl -lpthread"' modextrapaths = {'PATH': ['spider/bin']} -- GitLab From e3f796267c030c4988e24274c0074483a8681d04 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Thu, 21 May 2015 18:23:16 +0200 Subject: [PATCH 1191/1217] CHARMM for intel/2015a --- .../c/CHARMM/CHARMM-37b2-intel-2015a.eb | 28 ++++++++++ ...CHARMM-37b2_fix-qgas-double-declared.patch | 53 +++++++++++++++++++ 2 files changed, 81 insertions(+) create mode 100644 easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-intel-2015a.eb create mode 100644 easybuild/easyconfigs/c/CHARMM/CHARMM-37b2_fix-qgas-double-declared.patch diff --git a/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-intel-2015a.eb b/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-intel-2015a.eb new file mode 100644 index 0000000000..155eb5a8ae --- /dev/null +++ b/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-intel-2015a.eb @@ -0,0 +1,28 @@ +# Authors:: Ward Poelmans + +name = "CHARMM" +version = "37b2" + +homepage = "http://www.charmm.org" +description = """CHARMM (Chemistry at HARvard Macromolecular Mechanics) is a versatile +and widely used molecular simulation program with broad application to many-particle systems.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = ["c%(version)s.tar.gz"] + +patches = [ + "qmmm-pme-%(version)s.patch", + "use-xhost-%(version)s.patch", + "main-case-fix-%(version)s.patch", + 'CHARMM-37b2_fix-qgas-double-declared.patch', +] + +# MKL activated automatically when the ictce toolchain is used +build_options = "FULL COLFFT PIPF" + +# Chose from: huge, xxlarge, xlarge, large, medium (the default), small, xsmall, reduce +system_size = "medium" + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2_fix-qgas-double-declared.patch b/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2_fix-qgas-double-declared.patch new file mode 100644 index 0000000000..2c8d36a45f --- /dev/null +++ b/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2_fix-qgas-double-declared.patch @@ -0,0 +1,53 @@ +reproduction of CHARMM SVN revision 272 (Check-in: http:/charmm.hanyang.ac.kr/6187) +renamed qgas variable in pbeq to qgas1 and updated references in energy +diff -ru c37b2.orig/source/energy/energy.src c37b2/source/energy/energy.src +--- c37b2.orig/source/energy/energy.src 2012-09-29 08:01:42.000000000 +0200 ++++ c37b2/source/energy/energy.src 2015-05-21 16:57:43.951197202 +0200 +@@ -266,7 +266,7 @@ + use param + use pathm + use mpathint, only: qpint, epint !##PATHINT +- use pbeq, only: qpbeq,qpbf,npbeq,qgsbp,pbforce,gsbp0,qgas,qsmbp,smbp0 !##PBEQ ++ use pbeq, only: qpbeq,qpbf,npbeq,qgsbp,pbforce,gsbp0,qgas1,qsmbp,smbp0 !##PBEQ + use pbound + use pert + use polarm, only: qpolar, polar1 !##POLAR +@@ -3203,7 +3203,7 @@ + + CALL PBFORCE(NATOM,X,Y,Z,CG,ETERM(PBELEC),ETERM(PBNP), & + DX,DY,DZ,NPBEQ,ecalls,.false. & +- ,QETERM(QMEL),ETERM(QMEL),QGAS & !##SCCDFTB ++ ,QETERM(QMEL),ETERM(QMEL),QGAS1 & !##SCCDFTB + ) + IF (TIMER.GT.1) & + CALL WRTTIM('Poisson Boltzmann Solvation energy times:') +diff -ru c37b2.orig/source/misc/pbeq.src c37b2/source/misc/pbeq.src +--- c37b2.orig/source/misc/pbeq.src 2012-08-08 20:08:30.000000000 +0200 ++++ c37b2/source/misc/pbeq.src 2015-05-21 16:55:47.871787533 +0200 +@@ -19,7 +19,7 @@ + !public :: pbeq0,pbforce,gsbp0,srdist + !QC: export more + public :: pbeq0,pbforce,gsbp0,srdist,m3,dm3,rpowerl2,cosmphi2,sinmphi2,& +- alpol2,dalpol2,lpol2,dlpol2,pbeq1,oldpbeq1,mayer,pbeq2,qgas, & ++ alpol2,dalpol2,lpol2,dlpol2,pbeq1,oldpbeq1,mayer,pbeq2,qgas1, & + pbeq_iniall,smbp0 + + !variables +@@ -115,7 +115,7 @@ + + ! The following is related to QM/MM implementation of gsbp and pb + ! Xiao_QC_UW0609 +- LOGICAL QPSC,QGAS ++ LOGICAL QPSC,QGAS1 + ##IF SCCDFTB + ! + ! COEFX -----> heap index for COEFX(NTPOL) +@@ -2734,7 +2734,7 @@ + ! XIAO_QC_UW0609 keyword for SCC/PB + MXTPSC = GTRMI(COMLYN,COMLEN,'MXPS',5000) + PSCTOL = GTRMF(COMLYN,COMLEN,'PSTL',1.0D-2) +- QGAS = INDXA(COMLYN,COMLEN,'IGAS').GT.0 ++ QGAS1 = INDXA(COMLYN,COMLEN,'IGAS').GT.0 + ! XIAO_QC_UW0609 add charge dependant radii + QCHDRAD = INDXA(COMLYN,COMLEN,'CHDR').GT.0 + IF (QCHDRAD) THEN -- GitLab From 2642b0323b03578be61758ff225fb8effb98dac6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 19:09:11 +0200 Subject: [PATCH 1192/1217] add patch for installing deap as Py3 extension --- .../p/Python/Python-3.4.1-intel-2014b.eb | 6 ++++++ .../p/Python/Python-3.4.1-intel-2015a.eb | 6 ++++++ .../p/Python/Python-3.4.3-intel-2015a.eb | 3 +++ .../deap-1.0.2_setup-open-README-utf8.patch | 17 +++++++++++++++++ 4 files changed, 32 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/deap-1.0.2_setup-open-README-utf8.patch diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb index 07f5694321..49334fee76 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb @@ -56,6 +56,9 @@ exts_list = [ }), ('paycheck', '1.0.2', { 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], + 'patches': [ + 'paycheck-1.0.2_setup-open-README-utf8.patch', + ], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -77,6 +80,9 @@ exts_list = [ }), ('deap', '1.0.1', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + 'patches': [ + 'deap-1.0.2_setup-open-README-utf8.patch', + ], }), ('decorator', '3.4.0', { 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb index ba75d726f9..8ddd32db67 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb @@ -56,6 +56,9 @@ exts_list = [ }), ('paycheck', '1.0.2', { 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], + 'patches': [ + 'paycheck-1.0.2_setup-open-README-utf8.patch', + ], }), ('argparse', '1.2.1', { 'source_urls': ['http://argparse.googlecode.com/files/'], @@ -77,6 +80,9 @@ exts_list = [ }), ('deap', '1.0.1', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + 'patches': [ + 'deap-1.0.2_setup-open-README-utf8.patch', + ], }), ('decorator', '3.4.0', { 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb index d79f2b54ad..a71f6ecf62 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb @@ -81,6 +81,9 @@ exts_list = [ ('deap', '1.0.2', { 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + 'patches': [ + 'deap-1.0.2_setup-open-README-utf8.patch', + ], }), ('decorator', '3.4.2', { 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], diff --git a/easybuild/easyconfigs/p/Python/deap-1.0.2_setup-open-README-utf8.patch b/easybuild/easyconfigs/p/Python/deap-1.0.2_setup-open-README-utf8.patch new file mode 100644 index 0000000000..6dece6f5d8 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/deap-1.0.2_setup-open-README-utf8.patch @@ -0,0 +1,17 @@ +--- deap-1.0.2.orig/setup.py 2015-05-12 04:06:49.000000000 +0200 ++++ deap-1.0.2/setup.py 2015-05-21 19:06:03.792820042 +0200 +@@ -1,4 +1,5 @@ + #!/usr/bin/env python ++import codecs + import sys + from distutils.core import setup + try: +@@ -10,7 +11,7 @@ + from pypandoc import convert + except ImportError: + print("warning: pypandoc module not found, could not convert Markdown to RST") +- read_md = lambda f: open(f, 'r').read() ++ read_md = lambda f: codecs.open(f, encoding='utf-8').read() + else: + read_md = lambda f: convert(f, 'rst') + -- GitLab From 4e5c4223b6c9fe5010909f037306404fef1a24ce Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 19:25:22 +0200 Subject: [PATCH 1193/1217] bump rtracklayer version --- .../r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb b/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb index 108db2e37d..42f13415a0 100644 --- a/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb +++ b/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb @@ -51,7 +51,7 @@ exts_list = [ ('tkWidgets', '1.44.0', bioconductor_options), ('Mfuzz', '2.26.0', bioconductor_options), ('maSigPro', '1.38.0', bioconductor_options), - ('rtracklayer', '1.26.2', bioconductor_options), + ('rtracklayer', '1.26.3', bioconductor_options), ('BSgenome', '1.34.1', bioconductor_options), ('GEOquery', '2.32.0', bioconductor_options), ('biomaRt', '2.22.0', bioconductor_options), -- GitLab From 929ead97b4a3abcee028477e385cb3c4fe6ab2e5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 19:34:47 +0200 Subject: [PATCH 1194/1217] bump GenomicFeatures version --- .../r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb b/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb index 42f13415a0..6fa810b17b 100644 --- a/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb +++ b/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb @@ -62,7 +62,7 @@ exts_list = [ ('GOstats', '2.32.0', bioconductor_options), ('geneplotter', '1.44.0', bioconductor_options), ('DESeq2', '1.6.3', bioconductor_options), - ('GenomicFeatures', '1.18.4', bioconductor_options), + ('GenomicFeatures', '1.18.7', bioconductor_options), ('VariantAnnotation', '1.12.9', bioconductor_options), ('biovizBase', '1.14.1', bioconductor_options), ('OrganismDbi', '1.8.1', bioconductor_options), -- GitLab From 50b099be684215bc154f134486e6a16d856bed98 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 19:47:36 +0200 Subject: [PATCH 1195/1217] bump KEGGprofile version --- .../r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb b/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb index 6fa810b17b..732d498ea8 100644 --- a/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb +++ b/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb @@ -78,7 +78,7 @@ exts_list = [ ('Homo.sapiens', '1.1.2', bioconductor_options), ('KEGGgraph', '1.24.0', bioconductor_options), ('KEGGREST', '1.6.4', bioconductor_options), - ('KEGGprofile', '1.8.0', bioconductor_options), + ('KEGGprofile', '1.8.2', bioconductor_options), ('minfi', '1.12.0', bioconductor_options), ('methylumi', '2.12.0', bioconductor_options), ('lumi', '2.18.0', bioconductor_options), -- GitLab From bed4ccdb0fe734f652941f2bf890ae4792000c92 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 19:59:16 +0200 Subject: [PATCH 1196/1217] bump GViz version --- .../r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb b/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb index 732d498ea8..a6d53af385 100644 --- a/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb +++ b/easybuild/easyconfigs/r/R-bundle/R-bundle-20150323-intel-2015a-R-3.1.3-extra.eb @@ -82,7 +82,7 @@ exts_list = [ ('minfi', '1.12.0', bioconductor_options), ('methylumi', '2.12.0', bioconductor_options), ('lumi', '2.18.0', bioconductor_options), - ('Gviz', '1.10.10', bioconductor_options), + ('Gviz', '1.10.11', bioconductor_options), ('methyAnalysis', '1.8.0', bioconductor_options), ('pathview', '1.6.0', bioconductor_options), ('SPIA', '2.18.0', bioconductor_options), -- GitLab From 1c264c26a5d5c529eb5cc583f7fb2a4458a7b0dc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 21:09:56 +0200 Subject: [PATCH 1197/1217] move vegan/widgetTools extensions to R foss/2015a easyconfig --- easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb index 5d7d661a1f..26e352af95 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb @@ -380,6 +380,8 @@ exts_list = [ ('xlsxjars', '0.6.1', ext_options), ('xlsx', '0.5.7', ext_options), ('Rsubread', '1.16.1', bioconductor_options), + ('vegan', '2.2-1', ext_options), # requires Tcl/Tk + ('widgetTools', '1.44.0', bioconductor_options), # requires Tcl/Tk ] moduleclass = 'lang' -- GitLab From 9cdee34afd8e5216d72b171cb7b50f3879f4e3fc Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 21 May 2015 22:29:45 +0200 Subject: [PATCH 1198/1217] include deap v1.0.1 specific patch --- .../p/Python/Python-3.4.1-intel-2014b.eb | 2 +- .../p/Python/Python-3.4.1-intel-2015a.eb | 2 +- .../deap-1.0.1_setup-open-README-utf8.patch | 17 +++++++++++++++++ 3 files changed, 19 insertions(+), 2 deletions(-) create mode 100644 easybuild/easyconfigs/p/Python/deap-1.0.1_setup-open-README-utf8.patch diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb index 49334fee76..d3f83f3c59 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb @@ -81,7 +81,7 @@ exts_list = [ ('deap', '1.0.1', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], 'patches': [ - 'deap-1.0.2_setup-open-README-utf8.patch', + 'deap-1.0.1_setup-open-README-utf8.patch', ], }), ('decorator', '3.4.0', { diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb index 8ddd32db67..9f71e6e86f 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb @@ -81,7 +81,7 @@ exts_list = [ ('deap', '1.0.1', { 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], 'patches': [ - 'deap-1.0.2_setup-open-README-utf8.patch', + 'deap-1.0.1_setup-open-README-utf8.patch', ], }), ('decorator', '3.4.0', { diff --git a/easybuild/easyconfigs/p/Python/deap-1.0.1_setup-open-README-utf8.patch b/easybuild/easyconfigs/p/Python/deap-1.0.1_setup-open-README-utf8.patch new file mode 100644 index 0000000000..b7c896999f --- /dev/null +++ b/easybuild/easyconfigs/p/Python/deap-1.0.1_setup-open-README-utf8.patch @@ -0,0 +1,17 @@ +--- deap-1.0.1.orig/setup.py 2014-04-08 15:49:52.000000000 +0200 ++++ deap-1.0.1/setup.py 2015-05-21 22:25:37.345008000 +0200 +@@ -1,4 +1,5 @@ + #!/usr/bin/env python ++import codecs + import sys + from distutils.core import setup + try: +@@ -11,7 +12,7 @@ + setup(name='deap', + version=deap.__revision__, + description='Distributed Evolutionary Algorithms in Python', +- long_description=open('README.txt').read(), ++ long_description=codecs.open('README.txt', encoding='utf-8').read(), + author='deap Development Team', + author_email='deap-users@googlegroups.com', + url='http://deap.googlecode.com', -- GitLab From 54ddbfbfdc33fa68c1ff125bca4e3783e3088d4d Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Fri, 22 May 2015 10:18:44 +0200 Subject: [PATCH 1199/1217] fix versionsuffix for extra R-bundle dep --- .../R-bundle/R-bundle-20150520-intel-2015a-R-3.1.3-devtools.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/r/R-bundle/R-bundle-20150520-intel-2015a-R-3.1.3-devtools.eb b/easybuild/easyconfigs/r/R-bundle/R-bundle-20150520-intel-2015a-R-3.1.3-devtools.eb index d4a983401d..5a2b464944 100644 --- a/easybuild/easyconfigs/r/R-bundle/R-bundle-20150520-intel-2015a-R-3.1.3-devtools.eb +++ b/easybuild/easyconfigs/r/R-bundle/R-bundle-20150520-intel-2015a-R-3.1.3-devtools.eb @@ -16,7 +16,7 @@ exts_filter = ("R -q --no-save", "library(%(ext_name)s)") dependencies = [ ('R', rver), - ('R-bundle', '20150323-R-%s-extra' % rver), + ('R-bundle', '20150323', '-R-%s-extra' % rver), ] ext_options = { -- GitLab From d3d92f131d3efdaabfe60b03eb261de2f1730ebf Mon Sep 17 00:00:00 2001 From: Stefano Bridi Date: Fri, 22 May 2015 11:24:24 +0200 Subject: [PATCH 1200/1217] OpenFOAM foss 2015.05 flavour: needed for Centos6 on Haswell --- .../o/OpenFOAM/OpenFOAM-2.3.1-foss-2015.05.eb | 58 +++++++++++++++++++ 1 file changed, 58 insertions(+) create mode 100644 easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.1-foss-2015.05.eb diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.1-foss-2015.05.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.1-foss-2015.05.eb new file mode 100644 index 0000000000..14bd0cffc2 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.1-foss-2015.05.eb @@ -0,0 +1,58 @@ +# Built with EasyBuild version 2.1.0 on 2015-05-21_16-18-05 +name = 'OpenFOAM' +version = '2.3.1' + +homepage = 'http://www.openfoam.com/' +description = """OpenFOAM is a free, open source CFD software package. + OpenFOAM has an extensive range of features to solve anything from complex fluid flows + involving chemical reactions, turbulence and heat transfer, + to solid dynamics and electromagnetics.""" + +toolchain = {'name': 'foss', 'version': '2015.05'} + +source_urls = ['http://downloads.sourceforge.net/foam/%(version)s'] +sources = [ + SOURCE_TGZ, + 'ThirdParty-%(version)s.tgz', +] + +patches = [ + 'cleanup-OpenFOAM-%(version)s.patch', + 'OpenFOAM-2.3.0_libreadline.patch', + ('cleanup-ThirdParty-%(version)s.patch', ".."), # patch should not be applied in OpenFOAM subdir +] + +dependencies = [ + ('libreadline', '6.3'), + ('SCOTCH', '6.0.4'), + ('ncurses', '5.9'), +] + +builddependencies = [('flex', '2.5.39')] + +moduleclass = 'cae' + +# Build statistics +buildstats = [{ + "easybuild-framework_version": "2.1.0", + "easybuild-easyblocks_version": "2.1.0", + "timestamp": 1432217883, + "build_time": 2389.2, + "install_size": 1888270856, + "command_line": ['--buildpath=/sw/eb/build', '--debug', '--installpath=/sw/eb', '--prefix=/sw/eb', '--repositorypath=/sw/eb/ebfiles_repo', '--robot=/sw/eb/software/EasyBuild/2.1.0/lib/python2.6/site-packages/easybuild_easyconfigs-2.1.0-py2.6.egg/easybuild/easyconfigs', '--sourcepath=/sw/eb/sources', '--try-toolchain="[\'foss\', \'2015.05\']"', 'OpenFOAM-2.3.1-intel-2015a.eb'], + "modules_tool": ('EnvironmentModulesC', '/usr/bin/modulecmd', '3.2.10'), + "core_count": 12, + "cpu_model": "Intel(R) Xeon(R) CPU E5-2603 v3 @ 1.60GHz", + "cpu_speed": 1600.0, + "cpu_vendor": "Intel", + "gcc_version": "Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/sw/eb/software/GCC/4.9.2-binutils-2.25/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper; Target: x86_64-unknown-linux-gnu; Configured with: ../configure --enable-languages=c,c++,fortran --enable-lto --enable-checking=release --disable-multilib --enable-shared=yes --enable-static=yes --enable-threads=posix --enable-gold=default --enable-plugins --enable-ld --with-plugin-ld=ld.gold --enable-bootstrap --prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25 --with-local-prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25; Thread model: posix; gcc version 4.9.2 (GCC) ; ", + "glibc_version": "2.12", + "hostname": "boot-tenova", + "os_name": "centos", + "os_type": "Linux", + "os_version": "6.6", + "platform_name": "x86_64-unknown-linux", + "python_version": "2.6.6 (r266:84292, Jan 22 2014, 09:42:36) ; [GCC 4.4.7 20120313 (Red Hat 4.4.7-4)]", + "system_gcc_path": "/sw/eb/software/GCC/4.9.2-binutils-2.25/bin/gcc", + "system_python_path": "/usr/bin/python", +}] -- GitLab From 757910d0c00fcd3f85f4367e5fb29e55b92f4081 Mon Sep 17 00:00:00 2001 From: Stefano Bridi Date: Fri, 22 May 2015 12:15:43 +0200 Subject: [PATCH 1201/1217] adding missing libreadline,SCOTCH,ncurses,flex --- .../f/flex/flex-2.5.39-foss-2015.05.eb | 40 ++++++++++++++ .../libreadline-6.3-foss-2015.05.eb | 53 +++++++++++++++++++ .../n/ncurses/ncurses-5.9-foss-2015.05.eb | 48 +++++++++++++++++ .../s/SCOTCH/SCOTCH-6.0.4-foss-2015.05.eb | 40 ++++++++++++++ 4 files changed, 181 insertions(+) create mode 100644 easybuild/easyconfigs/f/flex/flex-2.5.39-foss-2015.05.eb create mode 100644 easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb create mode 100644 easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb create mode 100644 easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-foss-2015.05.eb diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-foss-2015.05.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-foss-2015.05.eb new file mode 100644 index 0000000000..4e10bab03a --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-foss-2015.05.eb @@ -0,0 +1,40 @@ +# Built with EasyBuild version 2.1.0 on 2015-05-21_15-38-14 +name = 'flex' +version = '2.5.39' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'foss', 'version': '2015.05'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' + +# Build statistics +buildstats = [{ + "easybuild-framework_version": "2.1.0", + "easybuild-easyblocks_version": "2.1.0", + "timestamp": 1432215494, + "build_time": 21.24, + "install_size": 2865429, + "command_line": ['--buildpath=/sw/eb/build', '--debug', '--installpath=/sw/eb', '--prefix=/sw/eb', '--repositorypath=/sw/eb/ebfiles_repo', '--robot=/sw/eb/software/EasyBuild/2.1.0/lib/python2.6/site-packages/easybuild_easyconfigs-2.1.0-py2.6.egg/easybuild/easyconfigs', '--sourcepath=/sw/eb/sources', '--try-toolchain="[\'foss\', \'2015.05\']"', 'OpenFOAM-2.3.1-intel-2015a.eb'], + "modules_tool": ('EnvironmentModulesC', '/usr/bin/modulecmd', '3.2.10'), + "core_count": 12, + "cpu_model": "Intel(R) Xeon(R) CPU E5-2603 v3 @ 1.60GHz", + "cpu_speed": 1600.0, + "cpu_vendor": "Intel", + "gcc_version": "Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/sw/eb/software/GCC/4.9.2-binutils-2.25/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper; Target: x86_64-unknown-linux-gnu; Configured with: ../configure --enable-languages=c,c++,fortran --enable-lto --enable-checking=release --disable-multilib --enable-shared=yes --enable-static=yes --enable-threads=posix --enable-gold=default --enable-plugins --enable-ld --with-plugin-ld=ld.gold --enable-bootstrap --prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25 --with-local-prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25; Thread model: posix; gcc version 4.9.2 (GCC) ; ", + "glibc_version": "2.12", + "hostname": "boot-tenova", + "os_name": "centos", + "os_type": "Linux", + "os_version": "6.6", + "platform_name": "x86_64-unknown-linux", + "python_version": "2.6.6 (r266:84292, Jan 22 2014, 09:42:36) ; [GCC 4.4.7 20120313 (Red Hat 4.4.7-4)]", + "system_gcc_path": "/sw/eb/software/GCC/4.9.2-binutils-2.25/bin/gcc", + "system_python_path": "/usr/bin/python", +}] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb new file mode 100644 index 0000000000..1ad6cea720 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb @@ -0,0 +1,53 @@ +# Built with EasyBuild version 2.1.0 on 2015-05-21_15-37-53 +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'foss', 'version': '2015.05'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs' : [], +} + +moduleclass = 'lib' + +# Build statistics +buildstats = [{ + "easybuild-framework_version": "2.1.0", + "easybuild-easyblocks_version": "2.1.0", + "timestamp": 1432215473, + "build_time": 17.27, + "install_size": 2395805, + "command_line": ['--buildpath=/sw/eb/build', '--debug', '--installpath=/sw/eb', '--prefix=/sw/eb', '--repositorypath=/sw/eb/ebfiles_repo', '--robot=/sw/eb/software/EasyBuild/2.1.0/lib/python2.6/site-packages/easybuild_easyconfigs-2.1.0-py2.6.egg/easybuild/easyconfigs', '--sourcepath=/sw/eb/sources', '--try-toolchain="[\'foss\', \'2015.05\']"', 'OpenFOAM-2.3.1-intel-2015a.eb'], + "modules_tool": ('EnvironmentModulesC', '/usr/bin/modulecmd', '3.2.10'), + "core_count": 12, + "cpu_model": "Intel(R) Xeon(R) CPU E5-2603 v3 @ 1.60GHz", + "cpu_speed": 1600.0, + "cpu_vendor": "Intel", + "gcc_version": "Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/sw/eb/software/GCC/4.9.2-binutils-2.25/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper; Target: x86_64-unknown-linux-gnu; Configured with: ../configure --enable-languages=c,c++,fortran --enable-lto --enable-checking=release --disable-multilib --enable-shared=yes --enable-static=yes --enable-threads=posix --enable-gold=default --enable-plugins --enable-ld --with-plugin-ld=ld.gold --enable-bootstrap --prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25 --with-local-prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25; Thread model: posix; gcc version 4.9.2 (GCC) ; ", + "glibc_version": "2.12", + "hostname": "boot-tenova", + "os_name": "centos", + "os_type": "Linux", + "os_version": "6.6", + "platform_name": "x86_64-unknown-linux", + "python_version": "2.6.6 (r266:84292, Jan 22 2014, 09:42:36) ; [GCC 4.4.7 20120313 (Red Hat 4.4.7-4)]", + "system_gcc_path": "/sw/eb/software/GCC/4.9.2-binutils-2.25/bin/gcc", + "system_python_path": "/usr/bin/python", +}] diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb new file mode 100644 index 0000000000..5ba0974ce8 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb @@ -0,0 +1,48 @@ +# Built with EasyBuild version 2.1.0 on 2015-05-21_15-37-36 +name = 'ncurses' +version = '5.9' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'foss', 'version': '2015.05'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +configopts = [ + # default build, no custom configure options + '', + # the UTF-8 enabled version (ncursesw) + '--enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' +] + +moduleclass = 'devel' + +# Build statistics +buildstats = [{ + "easybuild-framework_version": "2.1.0", + "easybuild-easyblocks_version": "2.1.0", + "timestamp": 1432215455, + "build_time": 80.56, + "install_size": 24625439, + "command_line": ['--buildpath=/sw/eb/build', '--debug', '--installpath=/sw/eb', '--prefix=/sw/eb', '--repositorypath=/sw/eb/ebfiles_repo', '--robot=/sw/eb/software/EasyBuild/2.1.0/lib/python2.6/site-packages/easybuild_easyconfigs-2.1.0-py2.6.egg/easybuild/easyconfigs', '--sourcepath=/sw/eb/sources', '--try-toolchain="[\'foss\', \'2015.05\']"', 'OpenFOAM-2.3.1-intel-2015a.eb'], + "modules_tool": ('EnvironmentModulesC', '/usr/bin/modulecmd', '3.2.10'), + "core_count": 12, + "cpu_model": "Intel(R) Xeon(R) CPU E5-2603 v3 @ 1.60GHz", + "cpu_speed": 1600.0, + "cpu_vendor": "Intel", + "gcc_version": "Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/sw/eb/software/GCC/4.9.2-binutils-2.25/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper; Target: x86_64-unknown-linux-gnu; Configured with: ../configure --enable-languages=c,c++,fortran --enable-lto --enable-checking=release --disable-multilib --enable-shared=yes --enable-static=yes --enable-threads=posix --enable-gold=default --enable-plugins --enable-ld --with-plugin-ld=ld.gold --enable-bootstrap --prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25 --with-local-prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25; Thread model: posix; gcc version 4.9.2 (GCC) ; ", + "glibc_version": "2.12", + "hostname": "boot-tenova", + "os_name": "centos", + "os_type": "Linux", + "os_version": "6.6", + "platform_name": "x86_64-unknown-linux", + "python_version": "2.6.6 (r266:84292, Jan 22 2014, 09:42:36) ; [GCC 4.4.7 20120313 (Red Hat 4.4.7-4)]", + "system_gcc_path": "/sw/eb/software/GCC/4.9.2-binutils-2.25/bin/gcc", + "system_python_path": "/usr/bin/python", +}] diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-foss-2015.05.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-foss-2015.05.eb new file mode 100644 index 0000000000..e388e08516 --- /dev/null +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-foss-2015.05.eb @@ -0,0 +1,40 @@ +# Built with EasyBuild version 2.1.0 on 2015-05-21_15-36-15 +name = 'SCOTCH' +version = '6.0.4' + +homepage = 'http://gforge.inria.fr/projects/scotch/' +description = """Software package and libraries for sequential and parallel graph partitioning, +static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" + +toolchain = {'name': 'foss', 'version': '2015.05'} +toolchainopts = {'pic': True} + +source_urls = ['http://gforge.inria.fr/frs/download.php/file/34618/'] +sources = ['%(namelower)s_%(version)s.tar.gz'] + +moduleclass = 'math' + +# Build statistics +buildstats = [{ + "easybuild-framework_version": "2.1.0", + "easybuild-easyblocks_version": "2.1.0", + "timestamp": 1432215375, + "build_time": 70.85, + "install_size": 6501533, + "command_line": ['--buildpath=/sw/eb/build', '--debug', '--installpath=/sw/eb', '--prefix=/sw/eb', '--repositorypath=/sw/eb/ebfiles_repo', '--robot=/sw/eb/software/EasyBuild/2.1.0/lib/python2.6/site-packages/easybuild_easyconfigs-2.1.0-py2.6.egg/easybuild/easyconfigs', '--sourcepath=/sw/eb/sources', '--try-toolchain="[\'foss\', \'2015.05\']"', 'OpenFOAM-2.3.1-intel-2015a.eb'], + "modules_tool": ('EnvironmentModulesC', '/usr/bin/modulecmd', '3.2.10'), + "core_count": 12, + "cpu_model": "Intel(R) Xeon(R) CPU E5-2603 v3 @ 1.60GHz", + "cpu_speed": 1600.0, + "cpu_vendor": "Intel", + "gcc_version": "Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/sw/eb/software/GCC/4.9.2-binutils-2.25/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper; Target: x86_64-unknown-linux-gnu; Configured with: ../configure --enable-languages=c,c++,fortran --enable-lto --enable-checking=release --disable-multilib --enable-shared=yes --enable-static=yes --enable-threads=posix --enable-gold=default --enable-plugins --enable-ld --with-plugin-ld=ld.gold --enable-bootstrap --prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25 --with-local-prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25; Thread model: posix; gcc version 4.9.2 (GCC) ; ", + "glibc_version": "2.12", + "hostname": "boot-tenova", + "os_name": "centos", + "os_type": "Linux", + "os_version": "6.6", + "platform_name": "x86_64-unknown-linux", + "python_version": "2.6.6 (r266:84292, Jan 22 2014, 09:42:36) ; [GCC 4.4.7 20120313 (Red Hat 4.4.7-4)]", + "system_gcc_path": "/sw/eb/software/GCC/4.9.2-binutils-2.25/bin/gcc", + "system_python_path": "/usr/bin/python", +}] -- GitLab From a70c7d4b41166f23af8d4a68311170c86dd1594f Mon Sep 17 00:00:00 2001 From: Stefano Bridi Date: Fri, 22 May 2015 14:28:00 +0200 Subject: [PATCH 1202/1217] cleaned comments in flex-2.5.39-foss-2015.05.eb libreadline-6.3-foss-2015.05.eb ncurses-5.9-foss-2015.05.eb OpenFOAM-2.3.1-foss-2015.05.eb SCOTCH-6.0.4-foss-2015.05.eb --- .../f/flex/flex-2.5.39-foss-2015.05.eb | 25 ------------------- .../libreadline-6.3-foss-2015.05.eb | 25 ------------------- .../n/ncurses/ncurses-5.9-foss-2015.05.eb | 25 ------------------- .../o/OpenFOAM/OpenFOAM-2.3.1-foss-2015.05.eb | 25 ------------------- .../s/SCOTCH/SCOTCH-6.0.4-foss-2015.05.eb | 25 ------------------- 5 files changed, 125 deletions(-) diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-foss-2015.05.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-foss-2015.05.eb index 4e10bab03a..5f048f3577 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.5.39-foss-2015.05.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-foss-2015.05.eb @@ -1,4 +1,3 @@ -# Built with EasyBuild version 2.1.0 on 2015-05-21_15-38-14 name = 'flex' version = '2.5.39' @@ -14,27 +13,3 @@ source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] moduleclass = 'lang' -# Build statistics -buildstats = [{ - "easybuild-framework_version": "2.1.0", - "easybuild-easyblocks_version": "2.1.0", - "timestamp": 1432215494, - "build_time": 21.24, - "install_size": 2865429, - "command_line": ['--buildpath=/sw/eb/build', '--debug', '--installpath=/sw/eb', '--prefix=/sw/eb', '--repositorypath=/sw/eb/ebfiles_repo', '--robot=/sw/eb/software/EasyBuild/2.1.0/lib/python2.6/site-packages/easybuild_easyconfigs-2.1.0-py2.6.egg/easybuild/easyconfigs', '--sourcepath=/sw/eb/sources', '--try-toolchain="[\'foss\', \'2015.05\']"', 'OpenFOAM-2.3.1-intel-2015a.eb'], - "modules_tool": ('EnvironmentModulesC', '/usr/bin/modulecmd', '3.2.10'), - "core_count": 12, - "cpu_model": "Intel(R) Xeon(R) CPU E5-2603 v3 @ 1.60GHz", - "cpu_speed": 1600.0, - "cpu_vendor": "Intel", - "gcc_version": "Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/sw/eb/software/GCC/4.9.2-binutils-2.25/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper; Target: x86_64-unknown-linux-gnu; Configured with: ../configure --enable-languages=c,c++,fortran --enable-lto --enable-checking=release --disable-multilib --enable-shared=yes --enable-static=yes --enable-threads=posix --enable-gold=default --enable-plugins --enable-ld --with-plugin-ld=ld.gold --enable-bootstrap --prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25 --with-local-prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25; Thread model: posix; gcc version 4.9.2 (GCC) ; ", - "glibc_version": "2.12", - "hostname": "boot-tenova", - "os_name": "centos", - "os_type": "Linux", - "os_version": "6.6", - "platform_name": "x86_64-unknown-linux", - "python_version": "2.6.6 (r266:84292, Jan 22 2014, 09:42:36) ; [GCC 4.4.7 20120313 (Red Hat 4.4.7-4)]", - "system_gcc_path": "/sw/eb/software/GCC/4.9.2-binutils-2.25/bin/gcc", - "system_python_path": "/usr/bin/python", -}] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb index 1ad6cea720..93acd649a7 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb @@ -1,4 +1,3 @@ -# Built with EasyBuild version 2.1.0 on 2015-05-21_15-37-53 easyblock = 'ConfigureMake' name = 'libreadline' @@ -27,27 +26,3 @@ sanity_check_paths = { moduleclass = 'lib' -# Build statistics -buildstats = [{ - "easybuild-framework_version": "2.1.0", - "easybuild-easyblocks_version": "2.1.0", - "timestamp": 1432215473, - "build_time": 17.27, - "install_size": 2395805, - "command_line": ['--buildpath=/sw/eb/build', '--debug', '--installpath=/sw/eb', '--prefix=/sw/eb', '--repositorypath=/sw/eb/ebfiles_repo', '--robot=/sw/eb/software/EasyBuild/2.1.0/lib/python2.6/site-packages/easybuild_easyconfigs-2.1.0-py2.6.egg/easybuild/easyconfigs', '--sourcepath=/sw/eb/sources', '--try-toolchain="[\'foss\', \'2015.05\']"', 'OpenFOAM-2.3.1-intel-2015a.eb'], - "modules_tool": ('EnvironmentModulesC', '/usr/bin/modulecmd', '3.2.10'), - "core_count": 12, - "cpu_model": "Intel(R) Xeon(R) CPU E5-2603 v3 @ 1.60GHz", - "cpu_speed": 1600.0, - "cpu_vendor": "Intel", - "gcc_version": "Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/sw/eb/software/GCC/4.9.2-binutils-2.25/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper; Target: x86_64-unknown-linux-gnu; Configured with: ../configure --enable-languages=c,c++,fortran --enable-lto --enable-checking=release --disable-multilib --enable-shared=yes --enable-static=yes --enable-threads=posix --enable-gold=default --enable-plugins --enable-ld --with-plugin-ld=ld.gold --enable-bootstrap --prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25 --with-local-prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25; Thread model: posix; gcc version 4.9.2 (GCC) ; ", - "glibc_version": "2.12", - "hostname": "boot-tenova", - "os_name": "centos", - "os_type": "Linux", - "os_version": "6.6", - "platform_name": "x86_64-unknown-linux", - "python_version": "2.6.6 (r266:84292, Jan 22 2014, 09:42:36) ; [GCC 4.4.7 20120313 (Red Hat 4.4.7-4)]", - "system_gcc_path": "/sw/eb/software/GCC/4.9.2-binutils-2.25/bin/gcc", - "system_python_path": "/usr/bin/python", -}] diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb index 5ba0974ce8..e8393ca7cf 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb @@ -1,4 +1,3 @@ -# Built with EasyBuild version 2.1.0 on 2015-05-21_15-37-36 name = 'ncurses' version = '5.9' @@ -22,27 +21,3 @@ configopts = [ moduleclass = 'devel' -# Build statistics -buildstats = [{ - "easybuild-framework_version": "2.1.0", - "easybuild-easyblocks_version": "2.1.0", - "timestamp": 1432215455, - "build_time": 80.56, - "install_size": 24625439, - "command_line": ['--buildpath=/sw/eb/build', '--debug', '--installpath=/sw/eb', '--prefix=/sw/eb', '--repositorypath=/sw/eb/ebfiles_repo', '--robot=/sw/eb/software/EasyBuild/2.1.0/lib/python2.6/site-packages/easybuild_easyconfigs-2.1.0-py2.6.egg/easybuild/easyconfigs', '--sourcepath=/sw/eb/sources', '--try-toolchain="[\'foss\', \'2015.05\']"', 'OpenFOAM-2.3.1-intel-2015a.eb'], - "modules_tool": ('EnvironmentModulesC', '/usr/bin/modulecmd', '3.2.10'), - "core_count": 12, - "cpu_model": "Intel(R) Xeon(R) CPU E5-2603 v3 @ 1.60GHz", - "cpu_speed": 1600.0, - "cpu_vendor": "Intel", - "gcc_version": "Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/sw/eb/software/GCC/4.9.2-binutils-2.25/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper; Target: x86_64-unknown-linux-gnu; Configured with: ../configure --enable-languages=c,c++,fortran --enable-lto --enable-checking=release --disable-multilib --enable-shared=yes --enable-static=yes --enable-threads=posix --enable-gold=default --enable-plugins --enable-ld --with-plugin-ld=ld.gold --enable-bootstrap --prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25 --with-local-prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25; Thread model: posix; gcc version 4.9.2 (GCC) ; ", - "glibc_version": "2.12", - "hostname": "boot-tenova", - "os_name": "centos", - "os_type": "Linux", - "os_version": "6.6", - "platform_name": "x86_64-unknown-linux", - "python_version": "2.6.6 (r266:84292, Jan 22 2014, 09:42:36) ; [GCC 4.4.7 20120313 (Red Hat 4.4.7-4)]", - "system_gcc_path": "/sw/eb/software/GCC/4.9.2-binutils-2.25/bin/gcc", - "system_python_path": "/usr/bin/python", -}] diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.1-foss-2015.05.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.1-foss-2015.05.eb index 14bd0cffc2..6f0594b990 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.1-foss-2015.05.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.1-foss-2015.05.eb @@ -1,4 +1,3 @@ -# Built with EasyBuild version 2.1.0 on 2015-05-21_16-18-05 name = 'OpenFOAM' version = '2.3.1' @@ -32,27 +31,3 @@ builddependencies = [('flex', '2.5.39')] moduleclass = 'cae' -# Build statistics -buildstats = [{ - "easybuild-framework_version": "2.1.0", - "easybuild-easyblocks_version": "2.1.0", - "timestamp": 1432217883, - "build_time": 2389.2, - "install_size": 1888270856, - "command_line": ['--buildpath=/sw/eb/build', '--debug', '--installpath=/sw/eb', '--prefix=/sw/eb', '--repositorypath=/sw/eb/ebfiles_repo', '--robot=/sw/eb/software/EasyBuild/2.1.0/lib/python2.6/site-packages/easybuild_easyconfigs-2.1.0-py2.6.egg/easybuild/easyconfigs', '--sourcepath=/sw/eb/sources', '--try-toolchain="[\'foss\', \'2015.05\']"', 'OpenFOAM-2.3.1-intel-2015a.eb'], - "modules_tool": ('EnvironmentModulesC', '/usr/bin/modulecmd', '3.2.10'), - "core_count": 12, - "cpu_model": "Intel(R) Xeon(R) CPU E5-2603 v3 @ 1.60GHz", - "cpu_speed": 1600.0, - "cpu_vendor": "Intel", - "gcc_version": "Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/sw/eb/software/GCC/4.9.2-binutils-2.25/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper; Target: x86_64-unknown-linux-gnu; Configured with: ../configure --enable-languages=c,c++,fortran --enable-lto --enable-checking=release --disable-multilib --enable-shared=yes --enable-static=yes --enable-threads=posix --enable-gold=default --enable-plugins --enable-ld --with-plugin-ld=ld.gold --enable-bootstrap --prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25 --with-local-prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25; Thread model: posix; gcc version 4.9.2 (GCC) ; ", - "glibc_version": "2.12", - "hostname": "boot-tenova", - "os_name": "centos", - "os_type": "Linux", - "os_version": "6.6", - "platform_name": "x86_64-unknown-linux", - "python_version": "2.6.6 (r266:84292, Jan 22 2014, 09:42:36) ; [GCC 4.4.7 20120313 (Red Hat 4.4.7-4)]", - "system_gcc_path": "/sw/eb/software/GCC/4.9.2-binutils-2.25/bin/gcc", - "system_python_path": "/usr/bin/python", -}] diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-foss-2015.05.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-foss-2015.05.eb index e388e08516..25db821e80 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-foss-2015.05.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-foss-2015.05.eb @@ -1,4 +1,3 @@ -# Built with EasyBuild version 2.1.0 on 2015-05-21_15-36-15 name = 'SCOTCH' version = '6.0.4' @@ -14,27 +13,3 @@ sources = ['%(namelower)s_%(version)s.tar.gz'] moduleclass = 'math' -# Build statistics -buildstats = [{ - "easybuild-framework_version": "2.1.0", - "easybuild-easyblocks_version": "2.1.0", - "timestamp": 1432215375, - "build_time": 70.85, - "install_size": 6501533, - "command_line": ['--buildpath=/sw/eb/build', '--debug', '--installpath=/sw/eb', '--prefix=/sw/eb', '--repositorypath=/sw/eb/ebfiles_repo', '--robot=/sw/eb/software/EasyBuild/2.1.0/lib/python2.6/site-packages/easybuild_easyconfigs-2.1.0-py2.6.egg/easybuild/easyconfigs', '--sourcepath=/sw/eb/sources', '--try-toolchain="[\'foss\', \'2015.05\']"', 'OpenFOAM-2.3.1-intel-2015a.eb'], - "modules_tool": ('EnvironmentModulesC', '/usr/bin/modulecmd', '3.2.10'), - "core_count": 12, - "cpu_model": "Intel(R) Xeon(R) CPU E5-2603 v3 @ 1.60GHz", - "cpu_speed": 1600.0, - "cpu_vendor": "Intel", - "gcc_version": "Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/sw/eb/software/GCC/4.9.2-binutils-2.25/libexec/gcc/x86_64-unknown-linux-gnu/4.9.2/lto-wrapper; Target: x86_64-unknown-linux-gnu; Configured with: ../configure --enable-languages=c,c++,fortran --enable-lto --enable-checking=release --disable-multilib --enable-shared=yes --enable-static=yes --enable-threads=posix --enable-gold=default --enable-plugins --enable-ld --with-plugin-ld=ld.gold --enable-bootstrap --prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25 --with-local-prefix=/sw/eb/software/GCC/4.9.2-binutils-2.25; Thread model: posix; gcc version 4.9.2 (GCC) ; ", - "glibc_version": "2.12", - "hostname": "boot-tenova", - "os_name": "centos", - "os_type": "Linux", - "os_version": "6.6", - "platform_name": "x86_64-unknown-linux", - "python_version": "2.6.6 (r266:84292, Jan 22 2014, 09:42:36) ; [GCC 4.4.7 20120313 (Red Hat 4.4.7-4)]", - "system_gcc_path": "/sw/eb/software/GCC/4.9.2-binutils-2.25/bin/gcc", - "system_python_path": "/usr/bin/python", -}] -- GitLab From ec29cc694ff50160a089ce904e308b967912d93f Mon Sep 17 00:00:00 2001 From: Stefano Bridi Date: Fri, 22 May 2015 15:11:53 +0200 Subject: [PATCH 1203/1217] a byte cleaner ;) --- easybuild/easyconfigs/f/flex/flex-2.5.39-foss-2015.05.eb | 1 - .../easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb | 1 - easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb | 1 - easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.1-foss-2015.05.eb | 1 - easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-foss-2015.05.eb | 1 - 5 files changed, 5 deletions(-) diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-foss-2015.05.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-foss-2015.05.eb index 5f048f3577..208a02e540 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.5.39-foss-2015.05.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-foss-2015.05.eb @@ -12,4 +12,3 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] moduleclass = 'lang' - diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb index 93acd649a7..c23d9ba711 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb @@ -25,4 +25,3 @@ sanity_check_paths = { } moduleclass = 'lib' - diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb index e8393ca7cf..3ab27d3a62 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-foss-2015.05.eb @@ -20,4 +20,3 @@ configopts = [ ] moduleclass = 'devel' - diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.1-foss-2015.05.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.1-foss-2015.05.eb index 6f0594b990..9e1b2ca02b 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.1-foss-2015.05.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.3.1-foss-2015.05.eb @@ -30,4 +30,3 @@ dependencies = [ builddependencies = [('flex', '2.5.39')] moduleclass = 'cae' - diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-foss-2015.05.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-foss-2015.05.eb index 25db821e80..f5bdd9828b 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-foss-2015.05.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-foss-2015.05.eb @@ -12,4 +12,3 @@ source_urls = ['http://gforge.inria.fr/frs/download.php/file/34618/'] sources = ['%(namelower)s_%(version)s.tar.gz'] moduleclass = 'math' - -- GitLab From ae63f1c4b91fbb4ed2ba8a4966887b4f4185c404 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 27 May 2015 09:41:18 +0200 Subject: [PATCH 1204/1217] Update to Clang 3.6.1 --- .../c/Clang/Clang-3.6.1-GCC-4.9.2.eb | 49 +++++++++++++++++++ 1 file changed, 49 insertions(+) create mode 100644 easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb new file mode 100644 index 0000000000..15c22eef9c --- /dev/null +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb @@ -0,0 +1,49 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2013 Dmitri Gribenko, Ward Poelmans +# Authors:: Dmitri Gribenko +# Authors:: Ward Poelmans +# License:: GPLv2 or later, MIT, three-clause BSD. +# $Id$ +## + +name = "Clang" +version = "3.6.1" + +homepage = "http://clang.llvm.org/" +description = """C, C++, Objective-C compiler, based on LLVM. Does not + include C++ standard library -- use libstdc++ from GCC.""" + +# Clang also depends on libstdc++ during runtime, but this dependency is +# already specified as the toolchain. +toolchain = {'name': 'GCC', 'version': '4.9.2'} +# Do not set optarch to True: it will cause the build to fail +toolchainopts = {'optarch': False} + +source_urls = ["http://llvm.org/releases/%(version)s"] +sources = [ + "llvm-%(version)s.src.tar.xz", + "cfe-%(version)s.src.tar.xz", + "compiler-rt-%(version)s.src.tar.xz", + "polly-%(version)s.src.tar.xz", +] + +dependencies = [ + ('GMP', '6.0.0'), + ('ISL', '0.14'), +] + +builddependencies = [ + ('CMake', '3.2.1'), + ('Python', '2.7.9', '-bare'), + ('libxml2', '2.9.2'), +] + +assertions = True + +usepolly = True + +build_targets = ['X86'] + +moduleclass = 'compiler' -- GitLab From 84c98379f747142ef37eaa45900c867af0f792cf Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 27 May 2015 11:04:16 +0200 Subject: [PATCH 1205/1217] fix GMP 6.0.0a with GCC/4.9.2 --- .../c/Clang/Clang-3.6.0-GCC-4.9.2.eb | 2 +- .../easyconfigs/g/GMP/GMP-6.0.0-GCC-4.9.2.eb | 2 +- .../easyconfigs/g/GMP/GMP-6.0.0a-GCC-4.9.2.eb | 25 +++++++++++++++++++ .../easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb | 2 +- 4 files changed, 28 insertions(+), 3 deletions(-) create mode 100644 easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GCC-4.9.2.eb diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb index 445ace0985..40f0a86d6f 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb @@ -30,7 +30,7 @@ sources = [ ] dependencies = [ - ('GMP', '6.0.0'), + ('GMP', '6.0.0a'), ('ISL', '0.14'), ] diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.0.0-GCC-4.9.2.eb b/easybuild/easyconfigs/g/GMP/GMP-6.0.0-GCC-4.9.2.eb index 08df157950..df7b8848c5 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-6.0.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-6.0.0-GCC-4.9.2.eb @@ -9,7 +9,7 @@ operating on signed integers, rational numbers, and floating point numbers. """ toolchain = {'name': 'GCC', 'version': '4.9.2'} -sources = ["%(namelower)s-%(version)sa.tar.bz2"] +sources = ["%(namelower)s-%(version)s.tar.bz2"] source_urls = [GNU_SOURCE] # enable C++ interface diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GCC-4.9.2.eb b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GCC-4.9.2.eb new file mode 100644 index 0000000000..a9855e2029 --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GCC-4.9.2.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '6.0.0a' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = ["%(namelower)s-%(version)s.tar.bz2"] +source_urls = [GNU_SOURCE] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.so', 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb b/easybuild/easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb index 3ba25676db..f6423e5d6e 100644 --- a/easybuild/easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'GCC', 'version': '4.9.2'} source_urls = ['http://isl.gforge.inria.fr/'] sources = [SOURCELOWER_TAR_BZ2] -dependencies = [('GMP', '6.0.0')] +dependencies = [('GMP', '6.0.0a')] sanity_check_paths = { 'files': ['lib/libisl.so', 'lib/libisl.a'], -- GitLab From 6f3f4dcf481be0bd3542527498c81f8346bf0a11 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 27 May 2015 11:30:48 +0200 Subject: [PATCH 1206/1217] {bio}[dummy] fastqc 0.11.2 + 0.11.3 --- .../easyconfigs/f/fastqc/fastqc-0.11.2.eb | 27 +++++++++++++++++++ .../easyconfigs/f/fastqc/fastqc-0.11.3.eb | 27 +++++++++++++++++++ 2 files changed, 54 insertions(+) create mode 100644 easybuild/easyconfigs/f/fastqc/fastqc-0.11.2.eb create mode 100644 easybuild/easyconfigs/f/fastqc/fastqc-0.11.3.eb diff --git a/easybuild/easyconfigs/f/fastqc/fastqc-0.11.2.eb b/easybuild/easyconfigs/f/fastqc/fastqc-0.11.2.eb new file mode 100644 index 0000000000..9ff730ebed --- /dev/null +++ b/easybuild/easyconfigs/f/fastqc/fastqc-0.11.2.eb @@ -0,0 +1,27 @@ +easyblock = 'EB_Java' + +name = 'fastqc' +version = '0.11.2' + +homepage = 'http://www.bioinformatics.babraham.ac.uk/projects/fastqc/' +description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/fastqc/'] +sources = ['%(name)s_v%(version)s.zip'] + +dependencies = [('Java', '1.7.0_60')] + +postinstallcmds = ["chmod -R a+rx %(installdir)s/fastqc %(installdir)s/run_fastqc.bat"] + +modextrapaths = {'PATH': ['']} + +sanity_check_paths = { + 'files': ['fastqc'], + 'dirs': [], +} + +sanity_check_commands = [('fastqc', '-v')] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/fastqc/fastqc-0.11.3.eb b/easybuild/easyconfigs/f/fastqc/fastqc-0.11.3.eb new file mode 100644 index 0000000000..c5f20b9165 --- /dev/null +++ b/easybuild/easyconfigs/f/fastqc/fastqc-0.11.3.eb @@ -0,0 +1,27 @@ +easyblock = 'EB_Java' + +name = 'fastqc' +version = '0.11.3' + +homepage = 'http://www.bioinformatics.babraham.ac.uk/projects/fastqc/' +description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/fastqc/'] +sources = ['%(name)s_v%(version)s.zip'] + +dependencies = [('Java', '1.7.0_80')] + +postinstallcmds = ["chmod -R a+rx %(installdir)s/fastqc %(installdir)s/run_fastqc.bat"] + +modextrapaths = {'PATH': ['']} + +sanity_check_paths = { + 'files': ['fastqc'], + 'dirs': [], +} + +sanity_check_commands = [('fastqc', '-v')] + +moduleclass = 'bio' -- GitLab From 0af5491f63d43f506f1382e7c4b8b03394f31089 Mon Sep 17 00:00:00 2001 From: Ward Poelmans Date: Wed, 27 May 2015 11:59:09 +0200 Subject: [PATCH 1207/1217] Change name of gmp version --- easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb index 15c22eef9c..966759d71c 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb @@ -30,7 +30,7 @@ sources = [ ] dependencies = [ - ('GMP', '6.0.0'), + ('GMP', '6.0.0a'), ('ISL', '0.14'), ] -- GitLab From ac56b0de721ee0821608eb2d6a84be210e2c4ac1 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Wed, 27 May 2015 14:42:17 +0200 Subject: [PATCH 1208/1217] add fpp + deps as R extensions --- easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb | 4 ++++ easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb | 4 ++++ 2 files changed, 8 insertions(+) diff --git a/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb index 26e352af95..dee61f1e01 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.3-foss-2015a.eb @@ -382,6 +382,10 @@ exts_list = [ ('Rsubread', '1.16.1', bioconductor_options), ('vegan', '2.2-1', ext_options), # requires Tcl/Tk ('widgetTools', '1.44.0', bioconductor_options), # requires Tcl/Tk + ('forecast', '6.1', ext_options), + ('fma', '2.01', ext_options), + ('expsmooth', '2.3', ext_options), + ('fpp', '0.5', ext_options), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb index b39267177d..d50dfde38a 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb @@ -382,6 +382,10 @@ exts_list = [ ('Rsubread', '1.16.1', bioconductor_options), ('vegan', '2.2-1', ext_options), # requires Tcl/Tk ('widgetTools', '1.44.0', bioconductor_options), # requires Tcl/Tk + ('forecast', '6.1', ext_options), + ('fma', '2.01', ext_options), + ('expsmooth', '2.3', ext_options), + ('fpp', '0.5', ext_options), ] moduleclass = 'lang' -- GitLab From e1c84d962128346b1073db16e6f069a8d4acbec6 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 May 2015 11:13:08 +0200 Subject: [PATCH 1209/1217] include patch to build forecast with Intel compilers --- easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb | 2 +- easybuild/easyconfigs/r/R/forecast-6.1_icpc-wd308.patch | 9 +++++++++ 2 files changed, 10 insertions(+), 1 deletion(-) create mode 100644 easybuild/easyconfigs/r/R/forecast-6.1_icpc-wd308.patch diff --git a/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb index d50dfde38a..56604be04c 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.3-intel-2015a.eb @@ -382,7 +382,7 @@ exts_list = [ ('Rsubread', '1.16.1', bioconductor_options), ('vegan', '2.2-1', ext_options), # requires Tcl/Tk ('widgetTools', '1.44.0', bioconductor_options), # requires Tcl/Tk - ('forecast', '6.1', ext_options), + ('forecast', '6.1', dict(ext_options.items() + [('patches', ['forecast-6.1_icpc-wd308.patch'])])), ('fma', '2.01', ext_options), ('expsmooth', '2.3', ext_options), ('fpp', '0.5', ext_options), diff --git a/easybuild/easyconfigs/r/R/forecast-6.1_icpc-wd308.patch b/easybuild/easyconfigs/r/R/forecast-6.1_icpc-wd308.patch new file mode 100644 index 0000000000..8582ea93ae --- /dev/null +++ b/easybuild/easyconfigs/r/R/forecast-6.1_icpc-wd308.patch @@ -0,0 +1,9 @@ +ignore warning/error when building with Intel C++ compiler by including -wd308 flag in $CXXFLAGS +author: Kenneth Hoste (HPC-UGent) +--- forecast/src/Makevars.orig 2015-05-12 11:56:10.000000000 +0200 ++++ forecast/src/Makevars 2015-05-28 10:53:13.878100139 +0200 +@@ -1,2 +1,4 @@ + ## Use the R_HOME indirection to support installations of multiple R version + PKG_LIBS=$(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) ++# disable Intel C++ compiler (icpc) warning/error #308, to avoid 'member "std::complex::_M_value" is inaccessible' ++PKG_CXXFLAGS = -wd308 -- GitLab From ac6d71a57e7784a9017eb7d5416c05efb0088eca Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 May 2015 12:47:03 +0200 Subject: [PATCH 1210/1217] {lang}[intel/2015a] Python 2.7.10 --- .../p/Python/Python-2.7.10-intel-2015a.eb | 120 ++++++++++++++++++ .../s/SQLite/SQLite-3.8.10.2-intel-2015a.eb | 40 ++++++ 2 files changed, 160 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.10-intel-2015a.eb create mode 100644 easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.10-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.10-intel-2015a.eb new file mode 100644 index 0000000000..e42c4eb9ce --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.10-intel-2015a.eb @@ -0,0 +1,120 @@ +name = 'Python' +version = '2.7.10' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.2' +scipyversion = '0.15.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('SQLite', '3.8.10.2'), + ('Tk', '8.6.4', '-no-X11'), +# ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# order is important! +# package versions updated May 28th 2015 +exts_list = [ + ('setuptools', '16.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '7.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.6', { + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-1.8.0-mkl.patch', # % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.3.0', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('pbr', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + }), + ('lockfile', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.22', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.2', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.2', { + 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.2', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.13', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.15.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.14', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), + ('mock', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], + }), + ('pytz', '2015.4', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], + }), + ('pandas', '0.16.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb new file mode 100644 index 0000000000..7f1dc7e31f --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb @@ -0,0 +1,40 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.8.10.2' + +homepage = 'http://www.sqlite.org/' +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'intel', 'version': '2015a'} + +# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz +source_urls = ['http://www.sqlite.org/2015/'] +version_str = '%(version_major)s' + ''.join('%02d' % int(x) for x in version.split('.')[1:]) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] + +dependencies = [ + ('libreadline', '6.3'), + ('Tcl', '8.6.4'), +] + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/sqlite3'], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From 9a43d2783570dc62fe774b79cd59b0143b8c8e04 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 May 2015 12:49:18 +0200 Subject: [PATCH 1211/1217] {lang}[foss/2015a] Python 2.7.10 --- .../p/Python/Python-2.7.10-foss-2015a.eb | 120 ++++++++++++++++++ .../s/SQLite/SQLite-3.8.10.2-foss-2015a.eb | 40 ++++++ 2 files changed, 160 insertions(+) create mode 100644 easybuild/easyconfigs/p/Python/Python-2.7.10-foss-2015a.eb create mode 100644 easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.10-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.10-foss-2015a.eb new file mode 100644 index 0000000000..16e9072248 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.10-foss-2015a.eb @@ -0,0 +1,120 @@ +name = 'Python' +version = '2.7.10' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.9.2' +scipyversion = '0.15.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('SQLite', '3.8.10.2'), + ('Tk', '8.6.4', '-no-X11'), +# ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's +# nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# order is important! +# package versions updated May 28th 2015 +exts_list = [ + ('setuptools', '16.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '7.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.6', { + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-1.8.0-mkl.patch', # % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.3.0', { + 'source_urls': ['http://argparse.googlecode.com/files/'], + }), + ('pbr', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + }), + ('lockfile', '0.10.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.22', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.9.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.2', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.2', { + 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '3.4.2', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.0.2', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.13', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.15.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.14', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), + ('mock', '1.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], + }), + ('pytz', '2015.4', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], + }), + ('pandas', '0.16.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb new file mode 100644 index 0000000000..d5bf2693bd --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb @@ -0,0 +1,40 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.8.10.2' + +homepage = 'http://www.sqlite.org/' +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'foss', 'version': '2015a'} + +# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz +source_urls = ['http://www.sqlite.org/2015/'] +version_str = '%(version_major)s' + ''.join('%02d' % int(x) for x in version.split('.')[1:]) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] + +dependencies = [ + ('libreadline', '6.3'), + ('Tcl', '8.6.4'), +] + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/sqlite3'], + 'dirs': [], +} + +moduleclass = 'devel' -- GitLab From bcdea025bfc604af17e7d4e6b7d2b60796af2937 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 May 2015 14:33:19 +0200 Subject: [PATCH 1212/1217] extend sanity check for SQLite --- easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb index 7f1dc7e31f..03c9b50fba 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb @@ -33,8 +33,8 @@ dependencies = [ parallel = 1 sanity_check_paths = { - 'files': ['bin/sqlite3'], - 'dirs': [], + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.so'], + 'dirs': ['lib/pkgconfig'], } moduleclass = 'devel' -- GitLab From 8ab6b2e829ee34003022ad74349f38f9ffb9ce50 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 May 2015 14:34:51 +0200 Subject: [PATCH 1213/1217] extend sanity check for SQLite --- easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb index d5bf2693bd..fbe46bacc9 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb @@ -33,8 +33,8 @@ dependencies = [ parallel = 1 sanity_check_paths = { - 'files': ['bin/sqlite3'], - 'dirs': [], + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.so'], + 'dirs': ['lib/pkgconfig'], } moduleclass = 'devel' -- GitLab From 7d572304650bd03f278d32035f5665c3a7577f22 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 May 2015 14:36:46 +0200 Subject: [PATCH 1214/1217] fix remark --- easybuild/easyconfigs/p/Python/Python-2.7.10-foss-2015a.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.10-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.10-foss-2015a.eb index 16e9072248..08ae2a5f52 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.10-foss-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.10-foss-2015a.eb @@ -2,7 +2,8 @@ name = 'Python' version = '2.7.10' homepage = 'http://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." +description = """Python is a programming language that lets you work more quickly and integrate your systems + more effectively.""" toolchain = {'name': 'foss', 'version': '2015a'} toolchainopts = {'pic': True, 'opt': True, 'optarch': True} -- GitLab From 8ec777916625061646218da5cccda84090b7e1ce Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 May 2015 14:37:01 +0200 Subject: [PATCH 1215/1217] fix remark --- easybuild/easyconfigs/p/Python/Python-2.7.10-intel-2015a.eb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.10-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.10-intel-2015a.eb index e42c4eb9ce..5691adf05e 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.10-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.10-intel-2015a.eb @@ -2,7 +2,8 @@ name = 'Python' version = '2.7.10' homepage = 'http://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." +description = """Python is a programming language that lets you work more quickly and integrate your systems + more effectively.""" toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'pic': True, 'opt': True, 'optarch': True} -- GitLab From 3882c4aaaed7c4227813b84110b97205f92eb9e4 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 May 2015 15:07:40 +0200 Subject: [PATCH 1216/1217] {phys}[intel/2015a] Geant4 10.01.p01 --- .../c/CLHEP/CLHEP-2.2.0.5-intel-2015a.eb | 19 +++++++++++++++ .../g/Geant4/Geant4-10.01.p01-intel-2015a.eb | 24 +++++++++++++++++++ 2 files changed, 43 insertions(+) create mode 100644 easybuild/easyconfigs/c/CLHEP/CLHEP-2.2.0.5-intel-2015a.eb create mode 100644 easybuild/easyconfigs/g/Geant4/Geant4-10.01.p01-intel-2015a.eb diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.2.0.5-intel-2015a.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.2.0.5-intel-2015a.eb new file mode 100644 index 0000000000..c165bda92e --- /dev/null +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.2.0.5-intel-2015a.eb @@ -0,0 +1,19 @@ +easyblock = 'CMakeMake' + +name = 'CLHEP' +version = '2.2.0.5' + +homepage = 'http://proj-clhep.web.cern.ch/proj-clhep/' +description = """The CLHEP project is intended to be a set of HEP-specific foundation and + utility classes such as random generators, physics vectors, geometry and linear algebra. + CLHEP is structured in a set of packages independent of any external package.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TGZ] +source_urls = ['http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/'] + +separate_build_dir = True + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/Geant4/Geant4-10.01.p01-intel-2015a.eb b/easybuild/easyconfigs/g/Geant4/Geant4-10.01.p01-intel-2015a.eb new file mode 100644 index 0000000000..412c19225c --- /dev/null +++ b/easybuild/easyconfigs/g/Geant4/Geant4-10.01.p01-intel-2015a.eb @@ -0,0 +1,24 @@ +name = 'Geant4' +version = '10.01.p01' + +homepage = 'http://geant4.cern.ch/' +description = """Geant4 is a toolkit for the simulation of the passage of particles through matter. + Its areas of application include high energy, nuclear and accelerator physics, + as well as studies in medical and space science.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://geant4.cern.ch/support/source'] +sources = ['%(namelower)s.%(version)s.tar.gz'] + +dependencies = [ + ('expat', '2.1.0'), + ('CLHEP', '2.2.0.5'), +] + +builddependencies = [('CMake', '3.2.2')] + +configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" +configopts += "-DGEANT4_INSTALL_DATA=OFF" + +moduleclass = 'phys' -- GitLab From 9ec1a46de2390d2d455c64ffc2f10606f4d73db5 Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Thu, 28 May 2015 15:45:52 +0200 Subject: [PATCH 1217/1217] add missing CMake build dep --- easybuild/easyconfigs/c/CLHEP/CLHEP-2.2.0.5-intel-2015a.eb | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.2.0.5-intel-2015a.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.2.0.5-intel-2015a.eb index c165bda92e..9408c50361 100644 --- a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.2.0.5-intel-2015a.eb +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.2.0.5-intel-2015a.eb @@ -14,6 +14,8 @@ toolchainopts = {'pic': True} sources = [SOURCELOWER_TGZ] source_urls = ['http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/'] +builddependencies = [('CMake', '3.2.2')] + separate_build_dir = True moduleclass = 'numlib' -- GitLab