diff --git a/.gitignore b/.gitignore index 8179a745b4ce6d88bc0d37e77a4c0f9524aab728..ed706988e3a820cd998275e2c62e9d2c7bb4a7d5 100644 --- a/.gitignore +++ b/.gitignore @@ -8,3 +8,4 @@ dist/ *egg-info/ *.swp *.ropeproject/ +eb-*.log diff --git a/RELEASE_NOTES b/RELEASE_NOTES index ad3268bea11de41744213d65a5c566bbda787473..a3e8287af779d16f6c0066e1899df60f66e863d6 100644 --- a/RELEASE_NOTES +++ b/RELEASE_NOTES @@ -3,9 +3,35 @@ For more detailed information, please see the git log. These release notes can also be consulted at http://easybuild.readthedocs.org/en/latest/Release_notes.html. -The latest version of easybuild-easyconfig provides 4,819 easyconfig files, for 778 different software packages, +The latest version of easybuild-easyconfig provides 5,093 easyconfig files, for 799 different software packages, 34 different (compiler) toolchains, 12 software bundles and 1 meta-package. +v2.6.0 (January 26th 2016) +-------------------------- + +feature + bugfix release +- add easyconfigs for foss/2016a and intel/2016 common toolchains (#2310, #2311, #2339, #2363) + incl. easyconfigs for Boost, CMake, Python, Perl using these toolchains +- added example easyconfig files for 21 new software packages: + BLASR (#922), BioKanga (#2247), BoltzTraP (#2365), basemap (#2221), CppUnit (#2271), EggLib (#2335), + FLASH (#2281), GLM (#2288), hub (#2249), MACS2 (#1983), MotEvo (#843), numba (#2243), PGI (#1833, #2367), + PLY (#2305), PaStiX (#2319, #2326), patchelf (#2327), pip (#2284), RSEM (#2316), RcppArmadillo (#2289), + SCDE (#2289), slepc4py (#2318) +- added additional easyconfigs for various supported software packages: version updates, different toolchains, ... + including BamTools 2.4.0, Boost 1.60.0, Clang 3.7.1, DOLFIN/FFC/FIAT/Instant/UFL 1.6.0, GATE 7.0, GCC 5.3.0, + LLVM 3.7.1, pandas 0.17.1, PETSc 3.6.3, SAMtools 1.3, scipy 0.16.1, SLEPc 3.6.2, Trilinos 12.4.2, + Trinity 2.1.1, VTK 6.3.0 +- various other enhancements, including: + - added new Cray* toolchain versions with pinned dependency versions (#2222) + - don't hardcode .so, use SHLIB_EXT constant instead (#2245) + - add custom sanity check in GEOS easyconfigs (#2285) +- various bug fixes, including: + - add Autotools (M4) as a build dependency in GMP v6.x easyconfigs (#2096) + - remove argparse from list of extensions in Python 3.2+ easyconfigs, since it became part of stdlib (#2323) +- various style fixes, including: + - get rid of tabs (#2302) + - remove trailing whitespace (#2341) + v2.5.0 (December 17th 2015) --------------------------- diff --git a/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.12.1-linux-x86_64.eb b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.12.1-linux-x86_64.eb index b75c3fcda900325dd19d64698f6d0770efe3ed68..094f64851263b26e234b3e09ce596b69f1f96f8c 100644 --- a/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.12.1-linux-x86_64.eb +++ b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.12.1-linux-x86_64.eb @@ -5,7 +5,7 @@ versionsuffix = '-linux-x86_64' homepage = 'http://www.simulia.com/products/abaqus_fea.html' description = "Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA." -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = [SOURCE_TGZ] diff --git a/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.13.5-linux-x86_64.eb b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.13.5-linux-x86_64.eb index 5f10d53c0034ca3c2f1026b4499590a57efd43a2..f899ce8f01ef0aa926aa3c5c19d2286a14c7a788 100644 --- a/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.13.5-linux-x86_64.eb +++ b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.13.5-linux-x86_64.eb @@ -5,7 +5,7 @@ versionsuffix = '-linux-x86_64' homepage = 'http://www.simulia.com/products/abaqus_fea.html' description = "Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA." -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = [SOURCE_TGZ] diff --git a/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.14.1-linux-x86_64.eb b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.14.1-linux-x86_64.eb index db92841b05d4e98a86aab0e790c7a5897ab0bb25..2063066a889925d36cd7747413d2c49899664c6e 100644 --- a/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.14.1-linux-x86_64.eb +++ b/easybuild/easyconfigs/a/ABAQUS/ABAQUS-6.14.1-linux-x86_64.eb @@ -5,7 +5,7 @@ versionsuffix = '-linux-x86_64' homepage = 'http://www.simulia.com/products/abaqus_fea.html' description = "Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA." -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = [SOURCE_TGZ] diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb index a0768a4fb37e85ed907357b329230206ddb8a61c..9ff4e547c06ce0e0846fd561ef1d6fad0c3fff74 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.3-x86_64_linux_gnu4.5.eb @@ -27,8 +27,8 @@ sources = [('abinit-%s_%s.bz2' % (version, versionsuffix[1:]), 'tar xfj %s')] source_urls = ['http://ftp.abinit.org/'] sanity_check_paths = { - 'files': ["bin/abinit"], - 'dirs': [] - } + 'files': ["bin/abinit"], + 'dirs': [] +} moduleclass = 'chem' diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb index 0e53b02003a1589f80ab84a87635921ee0685125..b5b040ce63bcea694f619032ce0e1b79d181de19 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.0.5-x86_64_linux_gnu4.5.eb @@ -29,8 +29,8 @@ sources = [('abinit-%s_%s.bz2' % (version, versionsuffix[1:]), 'tar xfj %s')] source_urls = ['http://ftp.abinit.org/'] sanity_check_paths = { - 'files': ["bin/abinit"], - 'dirs': [] - } + 'files': ["bin/abinit"], + 'dirs': [] +} moduleclass = 'chem' diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb index 7722a1277b76511a26327a423b05c75d046f23ae..051d0927bf1ecbf0e44158a55db2266257116879 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.2.1-x86_64_linux_gnu4.5.eb @@ -30,8 +30,8 @@ sources = [('abinit-%s_%s.bz2' % (version, versionsuffix[1:]), 'tar xfj %s')] source_urls = ['http://ftp.abinit.org/'] sanity_check_paths = { - 'files': ["bin/abinit"], - 'dirs': [] - } + 'files': ["bin/abinit"], + 'dirs': [] +} moduleclass = 'chem' diff --git a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.4.3-goolf-1.4.10-ETSF_IO-1.0.4.eb b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.4.3-goolf-1.4.10-ETSF_IO-1.0.4.eb index 4d319523acef9584081e14f56c2b426f7d692824..f598583eb777fa56b745387e13c0a5ffe36b3310 100644 --- a/easybuild/easyconfigs/a/ABINIT/ABINIT-7.4.3-goolf-1.4.10-ETSF_IO-1.0.4.eb +++ b/easybuild/easyconfigs/a/ABINIT/ABINIT-7.4.3-goolf-1.4.10-ETSF_IO-1.0.4.eb @@ -33,7 +33,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ["bin/abinit"], + 'files': ["bin/abinit"], 'dirs': [] } diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 570c4b562c91d58f8e0a1ef156ca72ae30ac3e2c..c096f680faf70cc1261b933e8208c38ce593c80b 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -29,8 +29,8 @@ source_urls = ['http://www.bcgsc.ca/downloads/abyss/'] dependencies = [('Boost', '1.49.0', versionsuffix)] sanity_check_paths = { - 'files': ["bin/ABYSS", "bin/ABYSS-P"], - 'dirs': [] - } + 'files': ["bin/ABYSS", "bin/ABYSS-P"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb index 893dbac4abf8277a9ea1e31a16a576fd96b611a6..6d7dc91575a9cbdfa0e8bf4ceb0af6c397669036 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-goolf-1.4.10-Python-2.7.3.eb @@ -29,8 +29,8 @@ source_urls = ['http://www.bcgsc.ca/downloads/abyss/'] dependencies = [('Boost', '1.49.0', versionsuffix)] sanity_check_paths = { - 'files': ["bin/ABYSS", "bin/ABYSS-P"], - 'dirs': [] - } + 'files': ["bin/ABYSS", "bin/ABYSS-P"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb index 47d31cf71556cc53774fd908eff87f96164d14bc..935dda43400a08845722f43bfcfd642c61565f3a 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-4.0.6-Python-2.7.3.eb @@ -29,8 +29,8 @@ source_urls = ['http://www.bcgsc.ca/downloads/abyss/'] dependencies = [('Boost', '1.49.0', versionsuffix)] sanity_check_paths = { - 'files': ["bin/ABYSS", "bin/ABYSS-P"], - 'dirs': [] - } + 'files': ["bin/ABYSS", "bin/ABYSS-P"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb index 8ce4ee39f134dbdbe4db6f8b239872e83eb0ce08..f7709440c32f09da9fddd408ac08b19a347bfb5e 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.4-ictce-5.3.0-Python-2.7.3.eb @@ -29,8 +29,8 @@ source_urls = ['http://www.bcgsc.ca/downloads/abyss/'] dependencies = [('Boost', '1.49.0', versionsuffix)] sanity_check_paths = { - 'files': ["bin/ABYSS", "bin/ABYSS-P"], - 'dirs': [] - } + 'files': ["bin/ABYSS", "bin/ABYSS-P"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb index cdc9d8c7ad2f1801911e5020728fa0a98fba9080..93b76ef8beaa1b479c12592a4e15f2cab0d38089 100644 --- a/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/a/ABySS/ABySS-1.3.6-goolf-1.4.10-Python-2.7.5.eb @@ -26,11 +26,11 @@ toolchainopts = {'usempi': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.bcgsc.ca/downloads/abyss/'] -dependencies = [ +dependencies = [ ('sparsehash', '2.0.2'), ('Boost', '1.49.0', versionsuffix), ] - + sanity_check_paths = { 'files': ["bin/ABYSS", "bin/ABYSS-P"], 'dirs': [] diff --git a/easybuild/easyconfigs/a/ADF/ADF-2009.01a.pc64_linux.intelmpi.eb b/easybuild/easyconfigs/a/ADF/ADF-2009.01a.pc64_linux.intelmpi.eb index 6395f17b38d2e35896d2b5a8e14737237cebecd2..107e9cc6684965f85360d881df630e15f52783cb 100755 --- a/easybuild/easyconfigs/a/ADF/ADF-2009.01a.pc64_linux.intelmpi.eb +++ b/easybuild/easyconfigs/a/ADF/ADF-2009.01a.pc64_linux.intelmpi.eb @@ -6,7 +6,7 @@ version = '2009.01a.pc64_linux.intelmpi' homepage = 'http://www.scm.com/' description = "ADF is a premium-quality quantum chemistry software package based on Density Functional Theory (DFT)." -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['%(namelower)s%(version)s.bin.tgz'] diff --git a/easybuild/easyconfigs/a/ADF/ADF-2014.02.eb b/easybuild/easyconfigs/a/ADF/ADF-2014.02.eb new file mode 100644 index 0000000000000000000000000000000000000000..045e5244fde9823bc6ae0d11047ac403fa5285d2 --- /dev/null +++ b/easybuild/easyconfigs/a/ADF/ADF-2014.02.eb @@ -0,0 +1,31 @@ +easyblock = 'Tarball' + +name = 'ADF' +version = '2014.02' + +homepage = 'http://www.scm.com/ADF/' +description = """ADF is an accurate, parallelized, powerful computational chemistry program to understand and + predict chemical structure and reactivity with density functional theory (DFT).""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['%(namelower)s%(version)s.pc64_linux.IntelMPI+CUDA.tgz'] + +keepsymlinks = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['atomicdata', 'bin', 'examples'], +} + +modextravars = { + 'ADFHOME': '%(installdir)s', + 'ADFBIN': '%(installdir)s/bin', + 'ADFRESOURCES': '%(installdir)s/atomicdata', +} + +modloadmsg = "These environment variables need to be defined before using ADF:\n" +modloadmsg += " * $SCMLICENSE: path to ADF license file\n" +modloadmsg += " * $SCM_TMPDIR: path to user scratch directory" + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/a/ADF/ADF-2014.11.r48287-intel-2016a.eb b/easybuild/easyconfigs/a/ADF/ADF-2014.11.r48287-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..21843552e81463d6e6cf4449756188b70c9811c4 --- /dev/null +++ b/easybuild/easyconfigs/a/ADF/ADF-2014.11.r48287-intel-2016a.eb @@ -0,0 +1,22 @@ +name = 'ADF' +version = '2014.11.r48287' + +homepage = 'http://www.scm.com/ADF/' +description = """ADF is an accurate, parallelized, powerful computational chemistry program to understand and + predict chemical structure and reactivity with density functional theory (DFT).""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [ + '%(namelower)s%(version)s.src.tgz', + # no exact match on revision ID available, but not strictly needed + 'fix2014.pc64_linux.intelmpi.r48660.2.555.bin.tgz', +] + +license_file = HOME + "/licenses/ADF/license.txt" + +modloadmsg = "These environment variables need to be defined before using ADF:\n" +modloadmsg += " * $SCMLICENSE: path to ADF license file\n" +modloadmsg += " * $SCM_TMPDIR: path to user scratch directory" + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb index 7204bb4bed9d4769b4e8b57bc4c018c44ee1ff30..42399e15399fa518994b360f1040c9371e1a8506 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goalf-1.1.0-no-OFED.eb @@ -25,14 +25,14 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/amos/files/%s/%s' % (name.lower(), version), 'download')] dependencies = [ - ('expat', '2.1.0'), - ('MUMmer', '3.23'), - ] + ('expat', '2.1.0'), + ('MUMmer', '3.23'), +] sanity_check_paths = { - 'files': ['bin/AMOScmp', 'bin/AMOScmp-shortReads', 'bin/AMOScmp-shortReads-alignmentTrimmed' ], - 'dirs': [] - } + 'files': ['bin/AMOScmp', 'bin/AMOScmp-shortReads', 'bin/AMOScmp-shortReads-alignmentTrimmed'], + 'dirs': [] +} parallel = 1 # make crashes otherwise diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb index 67f7c8c305bc1cb37c117de1e3f712f62b77c02a..e1a0148b757a055bbf655b4299eaf7a4bb487adf 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-goolf-1.4.10.eb @@ -27,14 +27,14 @@ source_urls = [('http://sourceforge.net/projects/amos/files/%s/%s' % (name.lower patches = ['AMOS-3.1.0_GCC-4.7.patch'] dependencies = [ - ('expat', '2.1.0'), - ('MUMmer', '3.23'), - ] + ('expat', '2.1.0'), + ('MUMmer', '3.23'), +] sanity_check_paths = { - 'files': ['bin/AMOScmp', 'bin/AMOScmp-shortReads', 'bin/AMOScmp-shortReads-alignmentTrimmed' ], - 'dirs': [] - } + 'files': ['bin/AMOScmp', 'bin/AMOScmp-shortReads', 'bin/AMOScmp-shortReads-alignmentTrimmed'], + 'dirs': [] +} parallel = 1 # make crashes otherwise diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb index e18be68931ec1bc6d57d99c045da224c77a18ca3..02a64a2c6f8ced2a97460cdb38237e946ec2dd1e 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-4.0.6.eb @@ -25,14 +25,14 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/amos/files/%s/%s' % (name.lower(), version), 'download')] dependencies = [ - ('expat', '2.1.0'), - ('MUMmer', '3.23'), - ] + ('expat', '2.1.0'), + ('MUMmer', '3.23'), +] sanity_check_paths = { - 'files': ['bin/AMOScmp', 'bin/AMOScmp-shortReads', 'bin/AMOScmp-shortReads-alignmentTrimmed' ], - 'dirs': [] - } + 'files': ['bin/AMOScmp', 'bin/AMOScmp-shortReads', 'bin/AMOScmp-shortReads-alignmentTrimmed'], + 'dirs': [] +} parallel = 1 # make crashes otherwise diff --git a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb index 89797ac535945c0cce97cf372399bd1f06ae5038..7fce76229ecac59e6ac658af9f10f023594fcc9c 100644 --- a/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/AMOS/AMOS-3.1.0-ictce-5.3.0.eb @@ -26,14 +26,14 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/amos/files/%s/%s' % (name.lower(), version), 'download')] dependencies = [ - ('expat', '2.1.0'), - ('MUMmer', '3.23'), - ] + ('expat', '2.1.0'), + ('MUMmer', '3.23'), +] sanity_check_paths = { - 'files': ['bin/AMOScmp', 'bin/AMOScmp-shortReads', 'bin/AMOScmp-shortReads-alignmentTrimmed' ], - 'dirs': [] - } + 'files': ['bin/AMOScmp', 'bin/AMOScmp-shortReads', 'bin/AMOScmp-shortReads-alignmentTrimmed'], + 'dirs': [] +} parallel = 1 # make crashes otherwise diff --git a/easybuild/easyconfigs/a/ANSYS/ANSYS-15.0.eb b/easybuild/easyconfigs/a/ANSYS/ANSYS-15.0.eb index 5836d2ff45bb0958d38cb651fc74a04f43726ffc..673a19b69da9037dd3537da93761782f1bfaa22e 100644 --- a/easybuild/easyconfigs/a/ANSYS/ANSYS-15.0.eb +++ b/easybuild/easyconfigs/a/ANSYS/ANSYS-15.0.eb @@ -8,8 +8,8 @@ description = """ANSYS simulation software enables organizations to confidently toolchain = {'name': 'dummy', 'version': 'dummy'} -#create a zip file from the 3 install iso files. -#make sure all files of the iso's are in the same directory. +# create a zip file from the 3 install iso files. +# make sure all files of the iso's are in the same directory. sources = ['ANSYS-15.0.zip'] import os diff --git a/easybuild/easyconfigs/a/ANSYS_CFD/ANSYS_CFD-17.0.eb b/easybuild/easyconfigs/a/ANSYS_CFD/ANSYS_CFD-17.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..0217d1be22fa531bdd2e6a4f694f03506a305fcc --- /dev/null +++ b/easybuild/easyconfigs/a/ANSYS_CFD/ANSYS_CFD-17.0.eb @@ -0,0 +1,15 @@ +easyblock = 'EB_FLUENT' + +name = 'ANSYS_CFD' +version = '17.0' + +homepage = 'http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics' +description = """ANSYS computational fluid dynamics (CFD) simulation software allows you to predict, with confidence, + the impact of fluid flows on your product throughout design and manufacturing as well as during end use. + ANSYS renowned CFD analysis tools include the widely used and well-validated ANSYS Fluent and ANSYS CFX.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +sources = ['FLUIDSTRUCTURES_%s_LINX64.tar' % ''.join(version.split('.'))] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-ictce-5.4.0.eb b/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-ictce-5.4.0.eb index b32cf6ce866655f800a12a2ba3b2d6bb3105eca9..f40658d1411cc84a89ec70d5e6e1a2e5295fb854 100644 --- a/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-ictce-5.4.0.eb @@ -13,7 +13,7 @@ sources = [SOURCELOWER_TAR_GZ] patches = ['ANTLR-%(version)s_cpp-headers.patch'] -dependencies = [('Java', '1.7.0_60', '', True)] +dependencies = [('Java', '1.7.0_60', '', True)] configopts = "--disable-examples --disable-csharp" diff --git a/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-intel-2014b.eb b/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-intel-2014b.eb index 5cf3b03e646eb9b7cac45584217aef4f95b6069f..8ba4070760d593212c4f824aa41f678cf25e3d23 100644 --- a/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-intel-2014b.eb +++ b/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-intel-2014b.eb @@ -13,7 +13,7 @@ sources = [SOURCELOWER_TAR_GZ] patches = ['ANTLR-%(version)s_cpp-headers.patch'] -dependencies = [('Java', '1.7.0_60', '', True)] +dependencies = [('Java', '1.7.0_60', '', True)] configopts = "--disable-examples --disable-csharp" diff --git a/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-intel-2015a-Python-2.7.10.eb index 66d819dd00f81d6712315738d7ba6313d9cec0cb..31ae0ccb1524f8c6afe90fef162af687c90becc1 100644 --- a/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-intel-2015a-Python-2.7.10.eb @@ -10,7 +10,7 @@ description = """ANTLR, ANother Tool for Language Recognition, (formerly PCCTS) Java, C#, C++, or Python actions.""" toolchain = {'name': 'intel', 'version': '2015a'} - + source_urls = ['http://www.antlr2.org/download/'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..00631356607a325a632d88851a0e4c4d6374df86 --- /dev/null +++ b/easybuild/easyconfigs/a/ANTLR/ANTLR-2.7.7-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'ANTLR' +version = "2.7.7" + +homepage = 'http://www.antlr2.org/' +description = """ANTLR, ANother Tool for Language Recognition, (formerly PCCTS) + is a language tool that provides a framework for constructing recognizers, + compilers, and translators from grammatical descriptions containing + Java, C#, C++, or Python actions.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://www.antlr2.org/download/'] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['%(name)s-%(version)s_includes.patch'] + +pythonversion = '2.7.10' +versionsuffix = "-Python-%s" % pythonversion + +dependencies = [ + ('Java', '1.8.0_66', '', True), + ('Python', pythonversion), +] + +configopts = '--disable-examples --disable-csharp ' + +sanity_check_paths = { + 'files': ['bin/antlr', 'bin/antlr-config'], + 'dirs': ['include'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/a/APR-util/APR-util-1.5.4-foss-2015a.eb b/easybuild/easyconfigs/a/APR-util/APR-util-1.5.4-foss-2015a.eb index 7eb29d95957b950559ef701e4b6e5000c0d67056..299a987b846fa0a4d950d2b11bfce84fca830b82 100644 --- a/easybuild/easyconfigs/a/APR-util/APR-util-1.5.4-foss-2015a.eb +++ b/easybuild/easyconfigs/a/APR-util/APR-util-1.5.4-foss-2015a.eb @@ -20,7 +20,7 @@ dependencies = [ configopts = "--with-apr=$EBROOTAPR/bin/apr-1-config --with-sqlite3=$EBROOTSQLITE --with-expat=$EBROOTEXPAT " sanity_check_paths = { - 'files': ["bin/apu-1-config", "lib/libaprutil-1.so", "lib/libaprutil-1.a"], + 'files': ["bin/apu-1-config", "lib/libaprutil-1.%s" % SHLIB_EXT, "lib/libaprutil-1.a"], 'dirs': ["include/apr-1"], } diff --git a/easybuild/easyconfigs/a/APR/APR-1.5.2-foss-2015a.eb b/easybuild/easyconfigs/a/APR/APR-1.5.2-foss-2015a.eb index fdaff97c8e7debb3d5dc2488afb870c47278c761..50c9f6172193c2ac5984c66cc137f7ec28e1c61e 100644 --- a/easybuild/easyconfigs/a/APR/APR-1.5.2-foss-2015a.eb +++ b/easybuild/easyconfigs/a/APR/APR-1.5.2-foss-2015a.eb @@ -12,7 +12,7 @@ source_urls = ['http://archive.apache.org/dist/apr/'] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ["bin/apr-1-config", "lib/libapr-1.so", "lib/libapr-1.a"], + 'files': ["bin/apr-1-config", "lib/libapr-1.%s" % SHLIB_EXT, "lib/libapr-1.a"], 'dirs': ["include/apr-1"], } diff --git a/easybuild/easyconfigs/a/ARB/ARB-5.5-goolf-1.4.10.eb b/easybuild/easyconfigs/a/ARB/ARB-5.5-goolf-1.4.10.eb index 5aa0f9160ced000586f4e85c794ac1a101cb1cdd..41b26e296f8ed285812956498e91bfe76efe47c3 100644 --- a/easybuild/easyconfigs/a/ARB/ARB-5.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/ARB/ARB-5.5-goolf-1.4.10.eb @@ -24,7 +24,7 @@ dependencies = [ ('makedepend', '1.0.4'), ('imake', '1.0.5'), ('libXt', '1.1.4'), - ('motif', '2.3.4'), # libXm + ('motif', '2.3.4'), # libXm ('libXpm', '3.5.11'), ('libXaw', '1.0.12'), ('Perl', '5.16.3'), diff --git a/easybuild/easyconfigs/a/ARB/ARB-5.5-ictce-4.1.13.eb b/easybuild/easyconfigs/a/ARB/ARB-5.5-ictce-4.1.13.eb index 77b39fdaa5d5fe112d99a240d3f38b147b6b3161..7d9c072196ffec6b93cb3f473cc986d6d68813d7 100644 --- a/easybuild/easyconfigs/a/ARB/ARB-5.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/a/ARB/ARB-5.5-ictce-4.1.13.eb @@ -24,7 +24,7 @@ dependencies = [ ('makedepend', '1.0.4'), ('imake', '1.0.5'), ('libXt', '1.1.4'), - ('motif', '2.3.4'), # libXm + ('motif', '2.3.4'), # libXm ('libXpm', '3.5.11'), ('libXaw', '1.0.12'), ('Perl', '5.16.3'), diff --git a/easybuild/easyconfigs/a/ASE/ASE-3.6.0.2515-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/a/ASE/ASE-3.6.0.2515-goalf-1.1.0-no-OFED-Python-2.7.3.eb index d6c3ba40b8e25aefac516b94a926a3b48ae9c1d1..bb52b4b69d86c4ac87320aecaf1ef5368cd7c0e6 100644 --- a/easybuild/easyconfigs/a/ASE/ASE-3.6.0.2515-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ASE/ASE-3.6.0.2515-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -18,12 +18,12 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % (python, pythonver) dependencies = [ - (python, pythonver), - ] + (python, pythonver), +] sanity_check_paths = { - 'files': ['bin/ag', 'bin/ase', 'bin/ASE2ase.py', 'bin/testase.py'], - 'dirs': ['lib/python%s/site-packages/%s' % (pythonshortver, name.lower())] - } + 'files': ['bin/ag', 'bin/ase', 'bin/ASE2ase.py', 'bin/testase.py'], + 'dirs': ['lib/python%s/site-packages/%s' % (pythonshortver, name.lower())] +} moduleclass = 'chem' diff --git a/easybuild/easyconfigs/a/ASE/ASE-3.6.0.2515-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/a/ASE/ASE-3.6.0.2515-goolf-1.4.10-Python-2.7.3.eb index eccf705eddec6014a6ddcddff3c936f253a87671..dbbc53352ef3a768d42f1228c4dea3aae7a8c97a 100644 --- a/easybuild/easyconfigs/a/ASE/ASE-3.6.0.2515-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ASE/ASE-3.6.0.2515-goolf-1.4.10-Python-2.7.3.eb @@ -18,12 +18,12 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % (python, pythonver) dependencies = [ - (python, pythonver), - ] + (python, pythonver), +] sanity_check_paths = { - 'files': ['bin/ag', 'bin/ase', 'bin/ASE2ase.py', 'bin/testase.py'], - 'dirs': ['lib/python%s/site-packages/%s' % (pythonshortver, name.lower())] - } + 'files': ['bin/ag', 'bin/ase', 'bin/ASE2ase.py', 'bin/testase.py'], + 'dirs': ['lib/python%s/site-packages/%s' % (pythonshortver, name.lower())] +} moduleclass = 'chem' diff --git a/easybuild/easyconfigs/a/ASE/ASE-3.6.0.2515-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/a/ASE/ASE-3.6.0.2515-ictce-4.0.6-Python-2.7.3.eb index ea78c0bbca603c01c8aaa0dadafc677689533a23..3829980bc2b7d5899059a47258317807f2c0f496 100644 --- a/easybuild/easyconfigs/a/ASE/ASE-3.6.0.2515-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ASE/ASE-3.6.0.2515-ictce-4.0.6-Python-2.7.3.eb @@ -18,12 +18,12 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % (python, pythonver) dependencies = [ - (python, pythonver), - ] + (python, pythonver), +] sanity_check_paths = { - 'files': ['bin/ag', 'bin/ase', 'bin/ASE2ase.py', 'bin/testase.py'], - 'dirs': ['lib/python%s/site-packages/%s' % (pythonshortver, name.lower())] - } + 'files': ['bin/ag', 'bin/ase', 'bin/ASE2ase.py', 'bin/testase.py'], + 'dirs': ['lib/python%s/site-packages/%s' % (pythonshortver, name.lower())] +} moduleclass = 'chem' diff --git a/easybuild/easyconfigs/a/ASE/ASE-3.6.0.2515-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/a/ASE/ASE-3.6.0.2515-ictce-5.3.0-Python-2.7.3.eb index 290c09c81ee4321a4ccbeb83fa363f3dc2474f88..de265b05d30e2a3fe376a2918d5cc5fa5d03ba0a 100644 --- a/easybuild/easyconfigs/a/ASE/ASE-3.6.0.2515-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/a/ASE/ASE-3.6.0.2515-ictce-5.3.0-Python-2.7.3.eb @@ -19,12 +19,12 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % (python, pythonver) dependencies = [ - (python, pythonver), - ] + (python, pythonver), +] sanity_check_paths = { - 'files': ['bin/ag', 'bin/ase', 'bin/ASE2ase.py', 'bin/testase.py'], - 'dirs': ['lib/python%s/site-packages/%s' % (pythonshortver, name.lower())] - } + 'files': ['bin/ag', 'bin/ase', 'bin/ASE2ase.py', 'bin/testase.py'], + 'dirs': ['lib/python%s/site-packages/%s' % (pythonshortver, name.lower())] +} moduleclass = 'chem' diff --git a/easybuild/easyconfigs/a/ASE/ASE-3.9.1.4567-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/a/ASE/ASE-3.9.1.4567-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..3078c635fc2601fe6ea69583d3e798e70821d8d1 --- /dev/null +++ b/easybuild/easyconfigs/a/ASE/ASE-3.9.1.4567-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,28 @@ +easyblock = 'PythonPackage' + +name = 'ASE' +version = '3.9.1.4567' + +homepage = 'https://wiki.fysik.dtu.dk/ase/' +description = """ASE is a python package providing an open source Atomic Simulation Environment + in the Python scripting language.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['https://wiki.fysik.dtu.dk/ase-files/'] +sources = ['python-%(namelower)s-%(version)s.tar.gz'] + +pyver = '2.7.11' +pyshortver = '.'.join(pyver.split('.')[:2]) +versionsuffix = '-Python-%s' % pyver + +dependencies = [ + ('Python', pyver), +] + +sanity_check_paths = { + 'files': ['bin/ase-build', 'bin/ase-db', 'bin/ase-gui', 'bin/ase-info', 'bin/ase-run'], + 'dirs': ['lib/python%s/site-packages/%%(namelower)s' % pyshortver], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/a/ATK/ATK-2.16.0-intel-2015a.eb b/easybuild/easyconfigs/a/ATK/ATK-2.16.0-intel-2015a.eb index 6fc5e6597fb373e6ff6709fd24632c9e4f3c9df3..af67d8fed170df7af1eacfbbc6f914006149d042 100644 --- a/easybuild/easyconfigs/a/ATK/ATK-2.16.0-intel-2015a.eb +++ b/easybuild/easyconfigs/a/ATK/ATK-2.16.0-intel-2015a.eb @@ -20,7 +20,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libatk-1.0.so'], + 'files': ['lib/libatk-1.0.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/a/ATK/ATK-2.16.0-intel-2015b.eb b/easybuild/easyconfigs/a/ATK/ATK-2.16.0-intel-2015b.eb index 24bac3017fd5675cf0ee831d3cbf8ed1a6c7e31a..bddf11ebe82a690ab71c29dba493541271e55386 100644 --- a/easybuild/easyconfigs/a/ATK/ATK-2.16.0-intel-2015b.eb +++ b/easybuild/easyconfigs/a/ATK/ATK-2.16.0-intel-2015b.eb @@ -20,7 +20,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libatk-1.0.so'], + 'files': ['lib/libatk-1.0.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/a/ATK/ATK-2.18.0-intel-2016a.eb b/easybuild/easyconfigs/a/ATK/ATK-2.18.0-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..81788119c4f04e8efef1c9eeece4d7c6adf8f680 --- /dev/null +++ b/easybuild/easyconfigs/a/ATK/ATK-2.18.0-intel-2016a.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'ATK' +version = '2.18.0' + +homepage = 'https://developer.gnome.org/ATK/stable/' +description = """ + ATK provides the set of accessibility interfaces that are implemented by other + toolkits and applications. Using the ATK interfaces, accessibility tools have + full access to view and control running applications. +""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] + +glibver = '2.47.5' +dependencies = [ + ('GLib', glibver), + ('GObject-Introspection', '1.47.1') +] + +configopts = "--enable-introspection=yes" + +modextrapaths = { + 'XDG_DATA_DIRS': 'share', +} + +sanity_check_paths = { + 'files': ['lib/libatk-1.0.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/a/ATLAS/ATLAS-3.8.4-gompi-1.1.0-no-OFED-LAPACK-3.4.0.eb b/easybuild/easyconfigs/a/ATLAS/ATLAS-3.8.4-gompi-1.1.0-no-OFED-LAPACK-3.4.0.eb index ec567b4cbe8f40acaee8f6f44778a84b7d08d3f4..60ab20b7878207c8706e2d74645885de0dcc66b8 100644 --- a/easybuild/easyconfigs/a/ATLAS/ATLAS-3.8.4-gompi-1.1.0-no-OFED-LAPACK-3.4.0.eb +++ b/easybuild/easyconfigs/a/ATLAS/ATLAS-3.8.4-gompi-1.1.0-no-OFED-LAPACK-3.4.0.eb @@ -10,8 +10,8 @@ description = """ATLAS (Automatically Tuned Linear Algebra Software) is the appl toolchain = {'name': 'gompi', 'version': '1.1.0-no-OFED'} toolchainopts = {'pic': True} -sources = ['%s%s.tar.bz2' % (name.lower(), version)] -source_urls = [('http://sourceforge.net/projects/math-atlas/files/Stable/%s' % version, 'download')] +sources = ['%(namelower)s%(version)s.tar.bz2'] +source_urls = [('http://sourceforge.net/projects/math-atlas/files/Stable/%(version)s', 'download')] lapack = 'LAPACK' lapackver = '3.4.0' @@ -19,7 +19,7 @@ lapackver = '3.4.0' builddependencies = [(lapack, lapackver)] versionsuffix = '-%s-%s' % (lapack, lapackver) -patches = ['ATLAS-3.8.4_illegal-instruction-fix.patch'] +patches = ['ATLAS-%(version)s_illegal-instruction-fix.patch'] # build full LAPACK library with supplied netlib LAPACK full_lapack = True diff --git a/easybuild/easyconfigs/a/ATLAS/ATLAS-3.8.4-gompi-1.1.0-no-OFED-with-shared-libs.eb b/easybuild/easyconfigs/a/ATLAS/ATLAS-3.8.4-gompi-1.1.0-no-OFED-with-shared-libs.eb index 308e6f60355bc5a2423e8c3ad3314d680305d478..b85e7b5063a0fb8afe224b602863b945596729fe 100644 --- a/easybuild/easyconfigs/a/ATLAS/ATLAS-3.8.4-gompi-1.1.0-no-OFED-with-shared-libs.eb +++ b/easybuild/easyconfigs/a/ATLAS/ATLAS-3.8.4-gompi-1.1.0-no-OFED-with-shared-libs.eb @@ -11,12 +11,13 @@ description = """ATLAS (Automatically Tuned Linear Algebra Software) is the appl toolchain = {'name': 'gompi', 'version': '1.1.0-no-OFED'} toolchainopts = {'pic': True} -sources = ['%s%s.tar.bz2' % (name.lower(), version)] -source_urls = [('http://sourceforge.net/projects/math-atlas/files/Stable/%s' % version, 'download')] +sources = ['%(namelower)s%(version)s.tar.bz2'] +source_urls = [('http://sourceforge.net/projects/math-atlas/files/Stable/%(version)s', 'download')] -patches = ['ATLAS-3.8.4_illegal-instruction-fix.patch', - 'ATLAS-3.8.4_make-install-shared.patch' - ] +patches = [ + 'ATLAS-%(version)s_illegal-instruction-fix.patch', + 'ATLAS-%(version)s_make-install-shared.patch', +] # fix for http://math-atlas.sourceforge.net/errata.html#sharedProbe configopts = "-Ss f77lib '-L${EBROOTGCC}/lib64 -lgfortran'" diff --git a/easybuild/easyconfigs/a/ATLAS/ATLAS-3.8.4-gompi-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/ATLAS/ATLAS-3.8.4-gompi-1.1.0-no-OFED.eb index 5fa842f1c8762f9630d792987577f764537740d2..d541339cb7ecfa39989723031271c3ef905cfbee 100644 --- a/easybuild/easyconfigs/a/ATLAS/ATLAS-3.8.4-gompi-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/ATLAS/ATLAS-3.8.4-gompi-1.1.0-no-OFED.eb @@ -10,10 +10,10 @@ description = """ATLAS (Automatically Tuned Linear Algebra Software) is the appl toolchain = {'name': 'gompi', 'version': '1.1.0-no-OFED'} toolchainopts = {'pic': True} -sources = ['%s%s.tar.bz2' % (name.lower(), version)] -source_urls = [('http://sourceforge.net/projects/math-atlas/files/Stable/%s' % version, 'download')] +sources = ['%(namelower)s%(version)s.tar.bz2'] +source_urls = [('http://sourceforge.net/projects/math-atlas/files/Stable/%(version)s', 'download')] -patches = ['ATLAS-3.8.4_illegal-instruction-fix.patch'] +patches = ['ATLAS-%(version)s_illegal-instruction-fix.patch'] # fix for http://math-atlas.sourceforge.net/errata.html#sharedProbe configopts = "-Ss f77lib '-L$(EBTROOTGCC)/lib64 -lgfortran'" diff --git a/easybuild/easyconfigs/a/ATSAS/ATSAS-2.5.1-1.el6.x86_64.eb b/easybuild/easyconfigs/a/ATSAS/ATSAS-2.5.1-1.el6.x86_64.eb new file mode 100644 index 0000000000000000000000000000000000000000..72a18e6d64af0bd1fc098c9ac6ad4010b2254181 --- /dev/null +++ b/easybuild/easyconfigs/a/ATSAS/ATSAS-2.5.1-1.el6.x86_64.eb @@ -0,0 +1,24 @@ +easyblock = 'Tarball' + +name = 'ATSAS' +version = '2.5.1-1' +versionsuffix = '.el6.x86_64' + +homepage = 'http://www.embl-hamburg.de/ExternalInfo/Research/Sax/software.html' +description = """ATSAS is a program suite for small-angle scattering data analysis from biological macromolecules.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download via http://www.embl-hamburg.de/biosaxs/download.html +sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz'] + +modextrapaths = { + 'LD_LIBRARY_PATH': ['lib64/atsas'], +} + +sanity_check_paths = { + 'files': [], + 'dirs': ['bin', 'lib64/atsas', 'share'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/a/ATSAS/ATSAS-2.5.1-1.sl5.x86_64.eb b/easybuild/easyconfigs/a/ATSAS/ATSAS-2.5.1-1.sl5.x86_64.eb new file mode 100644 index 0000000000000000000000000000000000000000..8f8ca911d7d21bf813cc1bff2ddf61dea15c4f36 --- /dev/null +++ b/easybuild/easyconfigs/a/ATSAS/ATSAS-2.5.1-1.sl5.x86_64.eb @@ -0,0 +1,24 @@ +easyblock = 'Tarball' + +name = 'ATSAS' +version = '2.5.1-1' +versionsuffix = '.sl5.x86_64' + +homepage = 'http://www.embl-hamburg.de/ExternalInfo/Research/Sax/software.html' +description = """ATSAS is a program suite for small-angle scattering data analysis from biological macromolecules.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download via http://www.embl-hamburg.de/biosaxs/download.html +sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz'] + +modextrapaths = { + 'LD_LIBRARY_PATH': ['lib64/atsas'], +} + +sanity_check_paths = { + 'files': [], + 'dirs': ['bin', 'lib64/atsas', 'share'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/a/ATSAS/ATSAS-2.7.1-1.el7.x86_64.eb b/easybuild/easyconfigs/a/ATSAS/ATSAS-2.7.1-1.el7.x86_64.eb new file mode 100644 index 0000000000000000000000000000000000000000..d2e1adc5f0377ec45e93bf02206dd6e161eb70f6 --- /dev/null +++ b/easybuild/easyconfigs/a/ATSAS/ATSAS-2.7.1-1.el7.x86_64.eb @@ -0,0 +1,24 @@ +easyblock = 'Tarball' + +name = 'ATSAS' +version = '2.7.1-1' +versionsuffix = '.el7.x86_64' + +homepage = 'http://www.embl-hamburg.de/ExternalInfo/Research/Sax/software.html' +description = """ATSAS is a program suite for small-angle scattering data analysis from biological macromolecules.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download via http://www.embl-hamburg.de/biosaxs/download.html +sources = ['%(name)s-%(version)s%(versionsuffix)s.tar.gz'] + +modextrapaths = { + 'LD_LIBRARY_PATH': ['lib64/atsas'], +} + +sanity_check_paths = { + 'files': [], + 'dirs': ['bin', 'lib64/atsas', 'share/atsas'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/a/Armadillo/Armadillo-6.400.3-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/a/Armadillo/Armadillo-6.400.3-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..093ebf2f4e95dbd20bcca4ad8528f835a1ee1f41 --- /dev/null +++ b/easybuild/easyconfigs/a/Armadillo/Armadillo-6.400.3-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,22 @@ +name = 'Armadillo' +version = '6.400.3' +versionsuffix = '-Python-2.7.11' + +homepage = 'http://arma.sourceforge.net/' +description = """Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards + a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, + as well as a subset of trigonometric and statistics functions.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://sourceforge.net/projects/arma/files'] + +dependencies = [ + ('Boost', '1.59.0', versionsuffix), + ('arpack-ng', '3.3.0'), +] + +builddependencies = [('CMake', '3.4.1')] + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/a/Atkmm/Atkmm-2.22.7-intel-2015a.eb b/easybuild/easyconfigs/a/Atkmm/Atkmm-2.22.7-intel-2015a.eb index 946d69a7a2ec1056e5d382343fae2eff17bd3b87..a5593a4c547dcbe9b82f902c2e1409e01cac4861 100644 --- a/easybuild/easyconfigs/a/Atkmm/Atkmm-2.22.7-intel-2015a.eb +++ b/easybuild/easyconfigs/a/Atkmm/Atkmm-2.22.7-intel-2015a.eb @@ -19,7 +19,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libatkmm-1.6.so'], + 'files': ['lib/libatkmm-1.6.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/a/Atkmm/Atkmm-2.22.7-intel-2015b.eb b/easybuild/easyconfigs/a/Atkmm/Atkmm-2.22.7-intel-2015b.eb index 05a73c47576fc5e1bb7eb5acd5167edb23553ece..58785a851547cab01a0a48f724a79280452e045d 100644 --- a/easybuild/easyconfigs/a/Atkmm/Atkmm-2.22.7-intel-2015b.eb +++ b/easybuild/easyconfigs/a/Atkmm/Atkmm-2.22.7-intel-2015b.eb @@ -19,7 +19,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libatkmm-1.6.so'], + 'files': ['lib/libatkmm-1.6.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/a/AutoDock_Vina/AutoDock_Vina-1.1.2_linux_x86.eb b/easybuild/easyconfigs/a/AutoDock_Vina/AutoDock_Vina-1.1.2_linux_x86.eb index a27cf3bd195f755b9363dd8a834016928b2ac723..98f8c2275a93be4996c2b82ff448b28398c5b38c 100644 --- a/easybuild/easyconfigs/a/AutoDock_Vina/AutoDock_Vina-1.1.2_linux_x86.eb +++ b/easybuild/easyconfigs/a/AutoDock_Vina/AutoDock_Vina-1.1.2_linux_x86.eb @@ -15,7 +15,7 @@ description = """ AutoDock Vina is an open-source program for doing molecular do toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = ['http://vina.scripps.edu/download/'] -sources = ['%s_%s%s.tgz' % (name.lower(), version.replace('.','_'), versionsuffix)] +sources = ['%s_%s%s.tgz' % (name.lower(), version.replace('.', '_'), versionsuffix)] sanity_check_paths = { 'files': ["bin/vina_split", "bin/vina"], diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..1ea18e5a7c500e13b662b0c608053cc18946146c --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-GCC-4.9.3-2.25.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can adapt the + packages to many kinds of UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template file that lists the + operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", + "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2015a.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..1001ba837c6c8f4eee75612c7f0dcc6f4fc071af --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2015a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts to automatically + configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like + systems without manual user intervention. Autoconf creates a configuration script for a package from a + template file that lists the operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", + "autoscan", "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016a.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..34de43acd4bdfa4789d735885d21c55cac860454 --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-foss-2016a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can adapt the + packages to many kinds of UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template file that lists the + operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'foss', 'version': '2016a'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", + "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015b.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..801b643ac0ccf5d1e05778dc902b362796726c93 --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2015b.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts to automatically + configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like + systems without manual user intervention. Autoconf creates a configuration script for a package from a + template file that lists the operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", + "autoscan", "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2016a.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..9014da6c867c1bb91fcf288c5913cd8bf6eaac1f --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69-intel-2016a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can adapt the + packages to many kinds of UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template file that lists the + operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", + "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69.eb b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69.eb new file mode 100644 index 0000000000000000000000000000000000000000..88f6a855ea18821c39da3dc7dde73065f78dc839 --- /dev/null +++ b/easybuild/easyconfigs/a/Autoconf/Autoconf-2.69.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Autoconf' +version = '2.69' + +homepage = 'http://www.gnu.org/software/autoconf/' +description = """Autoconf is an extensible package of M4 macros that produce shell scripts + to automatically configure software source code packages. These scripts can adapt the + packages to many kinds of UNIX-like systems without manual user intervention. Autoconf + creates a configuration script for a package from a template file that lists the + operating system features that the package can use, in the form of M4 macro calls.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", + "autoupdate", "ifnames"]], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb index 675782f77b21c6fae5da97e80186cc8825ef725b..5661ddb517be5d5b03b4d3038e05d4868f914da1 100644 --- a/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/Automake/Automake-1.13.4-ictce-5.5.0.eb @@ -16,7 +16,7 @@ description = "Automake: GNU Standards-compliant Makefile generator" source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] -toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchain = {'name': 'ictce', 'version': '5.5.0'} dependencies = [('Autoconf', '2.69')] diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.7.2.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.7.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..05705b029ec11a8040f5ca1f298513e0067e3019 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.7.2.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'GCC', 'version': '4.7.2'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..a37c1d9e3b640f6bc43201517dfa0c06319276c8 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-GCC-4.9.3-2.25.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..7303c3d70e6fa0bbe9a953838f85fe693be895d5 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2015a.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..f73c4759eebf5ce980f4fcb6582337f65b9031e6 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-foss-2016a.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'foss', 'version': '2016a'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..25677b6f64982414f3f8b5321e0b741c4c28a7b1 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-ictce-5.5.0.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015b.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..8a059d28e6555eee00804ba73ab50eacb1d482e1 --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2015b.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016a.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..06fbc9d74bd3c351d8e09f1b2af9f2cf0ac4709d --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15-intel-2016a.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Automake/Automake-1.15.eb b/easybuild/easyconfigs/a/Automake/Automake-1.15.eb new file mode 100644 index 0000000000000000000000000000000000000000..155ccd39aafb47386284df525a0c3ff13ce63b8c --- /dev/null +++ b/easybuild/easyconfigs/a/Automake/Automake-1.15.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'Automake' +version = "1.15" + +homepage = 'http://www.gnu.org/software/automake/automake.html' +description = "Automake: GNU Standards-compliant Makefile generator" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('Autoconf', '2.69')] + +sanity_check_paths = { + 'files': ['bin/automake', 'bin/aclocal'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb index 067ccdbe63f0dedb0f824ff71c8e16acb7db9968..66216b2e543c3806d9950be75f5062a93109aa06 100644 --- a/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150119-GCC-4.9.2.eb @@ -1,7 +1,7 @@ easyblock = 'Bundle' name = 'Autotools' -version = '20150119' # date of the most recent change +version = '20150119' # date of the most recent change homepage = 'http://autotools.io' description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" @@ -9,9 +9,9 @@ description = """This bundle collect the standard GNU build tools: Autoconf, Aut toolchain = {'name': 'GCC', 'version': '4.9.2'} dependencies = [ - ('Autoconf', '2.69'), # 20120424 - ('Automake', '1.15'), # 20150105 - ('libtool', '2.4.5'), # 20150119 + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.5'), # 20150119 ] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-4.7.2.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-4.7.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..d72ed94ae6d6812980df15750d3a21083dde5888 --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-4.7.2.eb @@ -0,0 +1,17 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20150215' # date of the most recent change + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'GCC', 'version': '4.7.2'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-4.8.4.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-4.8.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..cdbc43842999ac575a51157564fe9f54a84433f1 --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-4.8.4.eb @@ -0,0 +1,17 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20150215' # date of the most recent change + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-4.9.2.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-4.9.2.eb index 9fe586bfbb756e6dbec876fc828c0c82ec110555..2b3b95424efb3232c4b4cde9cb38d606150d0134 100644 --- a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-4.9.2.eb @@ -9,9 +9,9 @@ description = """This bundle collect the standard GNU build tools: Autoconf, Aut toolchain = {'name': 'GCC', 'version': '4.9.2'} dependencies = [ - ('Autoconf', '2.69'), # 20120424 - ('Automake', '1.15'), # 20150105 - ('libtool', '2.4.6'), # 20150215 + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 ] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..b735d846baf29870e7b83b0d2acacd96e94aa5df --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GCC-4.9.3-2.25.eb @@ -0,0 +1,17 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20150215' # date of the most recent change + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GNU-4.9.2-2.25.eb index 25b293c3c4fb1235a05172f2414ad2a7add5bc05..f3b03541781c1128db270912278e388166a7a613 100644 --- a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GNU-4.9.2-2.25.eb +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GNU-4.9.2-2.25.eb @@ -9,9 +9,9 @@ description = """This bundle collect the standard GNU build tools: Autoconf, Aut toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} dependencies = [ - ('Autoconf', '2.69'), # 20120424 - ('Automake', '1.15'), # 20150105 - ('libtool', '2.4.6'), # 20150215 + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 ] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GNU-4.9.3-2.25.eb index 80fa06d91be10b6a435dc76d31a5eb6f2b253830..c1363ba80491d6e0dc2751704d2edd0e49f8b40f 100644 --- a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GNU-4.9.3-2.25.eb @@ -9,9 +9,9 @@ description = """This bundle collect the standard GNU build tools: Autoconf, Aut toolchain = {'name': 'GNU', 'version': '4.9.3-2.25'} dependencies = [ - ('Autoconf', '2.69'), # 20120424 - ('Automake', '1.15'), # 20150105 - ('libtool', '2.4.6'), # 20150215 + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 ] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GNU-5.1.0-2.25.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GNU-5.1.0-2.25.eb index 0d6c26a78c1a07f9750c421fff89738bf6c4a80f..cac7fe9cded8fdd93990628b1e1a371a2dd2bb07 100644 --- a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GNU-5.1.0-2.25.eb +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-GNU-5.1.0-2.25.eb @@ -9,9 +9,9 @@ description = """This bundle collect the standard GNU build tools: Autoconf, Aut toolchain = {'name': 'GNU', 'version': '5.1.0-2.25'} dependencies = [ - ('Autoconf', '2.69'), # 20120424 - ('Automake', '1.15'), # 20150105 - ('libtool', '2.4.6'), # 20150215 + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 ] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-foss-2015a.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..474b894ca2906d249b046f093acaeee024f17f32 --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-foss-2015a.eb @@ -0,0 +1,17 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20150215' # date of the most recent change + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-foss-2016a.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..b640e29fa5cc3ac996fcaa5013b83b67585c0f63 --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-foss-2016a.eb @@ -0,0 +1,17 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20150215' # date of the most recent change + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'foss', 'version': '2016a'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-ictce-5.5.0.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..72e186977db67df0b605c946cfc188fb75b933ef --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-ictce-5.5.0.eb @@ -0,0 +1,17 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20150215' # date of the most recent change + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-intel-2015b.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..82ab19bc9379361bbf15cb42ce1673574507f837 --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-intel-2015b.eb @@ -0,0 +1,17 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20150215' # date of the most recent change + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215-intel-2016a.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..caa4818cd692546c9dfba0426f6d7720e21e664b --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215-intel-2016a.eb @@ -0,0 +1,17 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20150215' # date of the most recent change + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/Autotools/Autotools-20150215.eb b/easybuild/easyconfigs/a/Autotools/Autotools-20150215.eb new file mode 100644 index 0000000000000000000000000000000000000000..af33b5e023222dd764d3f79b0c2afdb6de61d4a0 --- /dev/null +++ b/easybuild/easyconfigs/a/Autotools/Autotools-20150215.eb @@ -0,0 +1,17 @@ +easyblock = 'Bundle' + +name = 'Autotools' +version = '20150215' # date of the most recent change + +homepage = 'http://autotools.io' +description = """This bundle collect the standard GNU build tools: Autoconf, Automake and libtool""" + +toolchain = {'name': 'dummy', 'version': ''} + +dependencies = [ + ('Autoconf', '2.69'), # 20120424 + ('Automake', '1.15'), # 20150105 + ('libtool', '2.4.6'), # 20150215 +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/animation/animation-2.4-intel-2015b-R-3.2.1.eb b/easybuild/easyconfigs/a/animation/animation-2.4-intel-2015b-R-3.2.1.eb index 9260cfb55214dcc1475cbf563444566cdfebc519..871016656bec6007e14c7e369c8d79c81d3e18d3 100644 --- a/easybuild/easyconfigs/a/animation/animation-2.4-intel-2015b-R-3.2.1.eb +++ b/easybuild/easyconfigs/a/animation/animation-2.4-intel-2015b-R-3.2.1.eb @@ -20,7 +20,7 @@ versionsuffix = '-%s-%s' % (r, rver) dependencies = [ (r, rver), - ('ffmpeg', '2.8'), + ('FFmpeg', '2.8'), ('GraphicsMagick', '1.3.21'), ] diff --git a/easybuild/easyconfigs/a/ant/ant-1.9.6-Java-1.7.0_75.eb b/easybuild/easyconfigs/a/ant/ant-1.9.6-Java-1.7.0_75.eb new file mode 100644 index 0000000000000000000000000000000000000000..7da7aa32db660ca1155cce7adcd65c6eeabaf168 --- /dev/null +++ b/easybuild/easyconfigs/a/ant/ant-1.9.6-Java-1.7.0_75.eb @@ -0,0 +1,26 @@ +name = 'ant' +version = '1.9.6' + +homepage = 'http://ant.apache.org/' +description = """Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files + as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['apache-%(name)s-%(version)s-src.tar.gz'] +source_urls = ['http://archive.apache.org/dist/%(name)s/source/'] + +java = 'Java' +javaver = '1.7.0_75' +versionsuffix = '-%s-%s' % (java, javaver) + +dependencies = [(java, javaver)] + +builddependencies = [('JUnit', '4.11', versionsuffix)] + +sanity_check_paths = { + 'files': ['bin/ant', 'lib/ant.jar', 'lib/ant.jar'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/ant/ant-1.9.6-Java-1.7.0_80.eb b/easybuild/easyconfigs/a/ant/ant-1.9.6-Java-1.7.0_80.eb new file mode 100644 index 0000000000000000000000000000000000000000..d93ecdb14ed240d4746ce39b63527dfa86ffc607 --- /dev/null +++ b/easybuild/easyconfigs/a/ant/ant-1.9.6-Java-1.7.0_80.eb @@ -0,0 +1,23 @@ +name = 'ant' +version = '1.9.6' +versionsuffix = '-Java-%(javaver)s' + +homepage = 'http://ant.apache.org/' +description = """Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files + as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['apache-%(name)s-%(version)s-src.tar.gz'] +source_urls = ['http://archive.apache.org/dist/%(name)s/source/'] + +dependencies = [('Java', '1.7.0_80')] + +builddependencies = [('JUnit', '4.12', versionsuffix)] + +sanity_check_paths = { + 'files': ['bin/ant', 'lib/ant.jar', 'lib/ant.jar'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/ant/ant-1.9.6-Java-1.8.0_66.eb b/easybuild/easyconfigs/a/ant/ant-1.9.6-Java-1.8.0_66.eb new file mode 100644 index 0000000000000000000000000000000000000000..b048fcd09766b3fd62f1405afc3618e15e3a6eb1 --- /dev/null +++ b/easybuild/easyconfigs/a/ant/ant-1.9.6-Java-1.8.0_66.eb @@ -0,0 +1,26 @@ +name = 'ant' +version = '1.9.6' + +homepage = 'http://ant.apache.org/' +description = """Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files + as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['apache-%(name)s-%(version)s-src.tar.gz'] +source_urls = ['http://archive.apache.org/dist/%(name)s/source/'] + +java = 'Java' +javaver = '1.8.0_66' +versionsuffix = '-%s-%s' % (java, javaver) + +dependencies = [(java, javaver)] + +builddependencies = [('JUnit', '4.12', versionsuffix)] + +sanity_check_paths = { + 'files': ['bin/ant', 'lib/ant.jar', 'lib/ant.jar'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2015b.eb b/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..251023a5bd2d1cc01a1399f9c75028685109107f --- /dev/null +++ b/easybuild/easyconfigs/a/argtable/argtable-2.13-foss-2015b.eb @@ -0,0 +1,25 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'argtable' +version = '2.13' + +homepage = 'http://argtable.sourceforge.net/' +description = """ Argtable is an ANSI C library for parsing GNU style + command line options with a minimum of fuss. """ + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%s%s.tar.gz' % (name, version.replace('.', '-'))] + +sanity_check_paths = { + 'files': ['lib/libargtable2.so', 'lib/libargtable2.la'], + 'dirs': ['include', 'lib', 'share'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb b/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb index 00d3a24d263b369ee2501a39281e1c674684391b..5b65e6e0a5640ebdda8afe96bc4da40144450b59 100644 --- a/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/argtable/argtable-2.13-goolf-1.4.10.eb @@ -15,10 +15,10 @@ description = """ Argtable is an ANSI C library for parsing GNU style toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = [SOURCEFORGE_SOURCE] -sources = ['%s%s.tar.gz' % (name, version.replace('.','-'))] +sources = ['%s%s.tar.gz' % (name, version.replace('.', '-'))] sanity_check_paths = { - 'files': ['lib/libargtable2.so', 'lib/libargtable2.la'], + 'files': ['lib/libargtable2.%s' % SHLIB_EXT, 'lib/libargtable2.la'], 'dirs': ['include', 'lib', 'share'], } diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb index ebcf12ae1b367b5c015ff8042c4810b65b648be4..118bf6fc3bbe22ff7a175e36d01eb96d6ede446d 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goalf-1.1.0-no-OFED.eb @@ -21,8 +21,8 @@ source_urls = ['http://sourceforge.net/projects/aria2/files', 'download'] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sanity_check_paths = { - 'files': ['bin/aria2c'], - 'dirs': [] - } + 'files': ['bin/aria2c'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb index cb532e1ea26f7438a0974311b1e23867c19dd050..7d1302187b153ff24defb6204cf436805af2045f 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-goolf-1.4.10.eb @@ -21,8 +21,8 @@ source_urls = ['http://sourceforge.net/projects/aria2/files', 'download'] toolchain = {'name': 'goolf', 'version': '1.4.10'} sanity_check_paths = { - 'files': ['bin/aria2c'], - 'dirs': [] - } + 'files': ['bin/aria2c'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb index 1e9c1ad9809be91fef4739a3fa54858e4b755bd2..b6ba853506480a96264b65f9cee56e873072a4c6 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-4.0.6.eb @@ -21,8 +21,8 @@ source_urls = ['http://sourceforge.net/projects/aria2/files', 'download'] toolchain = {'version': '4.0.6', 'name': 'ictce'} sanity_check_paths = { - 'files': ['bin/aria2c'], - 'dirs': [] - } + 'files': ['bin/aria2c'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb index 3da57c79d8b016f4d12f364bccc9c278f8a08665..f4d08974f2d550025d7bd5c2d3cb1513dfe36cf1 100644 --- a/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/aria2/aria2-1.15.1-ictce-5.3.0.eb @@ -22,8 +22,8 @@ source_urls = ['http://sourceforge.net/projects/aria2/files', 'download'] toolchain = {'name': 'ictce', 'version': '5.3.0'} sanity_check_paths = { - 'files': ['bin/aria2c'], - 'dirs': [] - } + 'files': ['bin/aria2c'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb index 69351c2f0fbf24a77971bea12a95ea098025ff87..38638c65fbf0f9a711c4c2b3d74e072d5c5b03ab 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb @@ -22,7 +22,7 @@ patches = [ configopts = '--with-pic --with-blas="$LIBBLAS_MT" --with-lapack="$LIBLAPACK_MT"' sanity_check_paths = { - 'files': ["lib/libarpack.a", "lib/libarpack.so"], + 'files': ["lib/libarpack.a", "lib/libarpack.%s" % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb index 9491e3183b3ae434dc040c4e0c0361ee88384024..e567606aa794550bbccde08549e14c3cd0bb6930 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb @@ -22,7 +22,7 @@ patches = [ configopts = '--enable-mpi --with-pic --with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK"' sanity_check_paths = { - 'files': ["lib/libarpack.a", "lib/libarpack.so", "lib/libparpack.a", "lib/libparpack.so"], + 'files': ["lib/libarpack.a", "lib/libarpack.%s" % SHLIB_EXT, "lib/libparpack.a", "lib/libparpack.%s" % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb index e222e2fd03b6ec2e4f7edb8e334cf814967f3f83..837fa583de8227269041736e851dabc8dca952a8 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb @@ -22,7 +22,7 @@ patches = [ configopts = '--with-pic --with-blas="$LIBBLAS_MT" --with-lapack="$LIBLAPACK_MT"' sanity_check_paths = { - 'files': ["lib/libarpack.a", "lib/libarpack.so"], + 'files': ["lib/libarpack.a", "lib/libarpack.%s" % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb index feee7f7ba71fb0b23b1da98dd12a8cebad54300a..15e7a3b7340f8e24a785922f841b0b747b75e797 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb @@ -22,7 +22,7 @@ patches = [ configopts = '--enable-mpi --with-pic --with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK"' sanity_check_paths = { - 'files': ["lib/libarpack.a", "lib/libarpack.so", "lib/libparpack.a", "lib/libparpack.so"], + 'files': ["lib/libarpack.a", "lib/libarpack.%s" % SHLIB_EXT, "lib/libparpack.a", "lib/libparpack.%s" % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb index 812915265ce18cf8220e9aa55800e9cbc684d6a5..6388557ca2e36779a47b074157e8af97eb23f664 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb @@ -16,7 +16,7 @@ sources = ['%(name)s_%(version)s.tar.gz'] configopts = '--with-pic --with-blas="$LIBBLAS_MT" --with-lapack="$LIBLAPACK_MT"' sanity_check_paths = { - 'files': ["lib/libarpack.a", "lib/libarpack.so"], + 'files': ["lib/libarpack.a", "lib/libarpack.%s" % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb index 879d20e6567e049919d6ddd4c1efa9b1fa27d3c4..15bec194bef84d4784df2567b0df9191892d0834 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb @@ -15,7 +15,7 @@ sources = ['%(name)s_%(version)s.tar.gz'] configopts = '--with-pic --with-blas="$LIBBLAS_MT" --with-lapack="$LIBLAPACK_MT"' sanity_check_paths = { - 'files': ["lib/libarpack.a", "lib/libarpack.so"], + 'files': ["lib/libarpack.a", "lib/libarpack.%s" % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a-mt.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a-mt.eb index 5f89014f6e2369cb90ac61ca5f21021edb7c2969..0a13946d1b0b2a12371edb99ddf677d6346bb10e 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a-mt.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a-mt.eb @@ -16,7 +16,7 @@ sources = ['%(version)s.tar.gz'] configopts = '--with-pic --with-blas="$LIBBLAS_MT" --with-lapack="$LIBLAPACK_MT"' sanity_check_paths = { - 'files': ["lib/libarpack.a", "lib/libarpack.so"], + 'files': ["lib/libarpack.a", "lib/libarpack.%s" % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb index 9f6edb0eef22f69723385ae9bedb027ae1c8be83..a37e2d0ee2597c6873efd9ed915cc87384869d8e 100644 --- a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.2.0-intel-2015a.eb @@ -15,7 +15,7 @@ sources = ['%(version)s.tar.gz'] configopts = '--with-pic --with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK"' sanity_check_paths = { - 'files': ["lib/libarpack.a", "lib/libarpack.so"], + 'files': ["lib/libarpack.a", "lib/libarpack.%s" % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.3.0-intel-2015b.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.3.0-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..e5eaecb750d92d0993c3d223eeab55bd5ce594a0 --- /dev/null +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.3.0-intel-2015b.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'arpack-ng' +version = '3.3.0' + +homepage = 'http://forge.scilab.org/index.php/p/arpack-ng/' +description = """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'opt': True, 'pic': True, 'usempi': True} + +source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] +sources = ['%(version)s.tar.gz'] + +builddependencies = [('Autotools', '20150215', '', ('GNU', '4.9.3-2.25'))] + +preconfigopts = "sh bootstrap && " +configopts = '--with-pic --with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK"' + +sanity_check_paths = { + 'files': ["lib/libarpack.a", "lib/libarpack.so"], + 'dirs': [] +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.3.0-intel-2016a.eb b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.3.0-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..a242bc1b1ee37041db2b04208117c2c29f0d3830 --- /dev/null +++ b/easybuild/easyconfigs/a/arpack-ng/arpack-ng-3.3.0-intel-2016a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'arpack-ng' +version = '3.3.0' + +homepage = 'http://forge.scilab.org/index.php/p/arpack-ng/' +description = """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'opt': True, 'pic': True, 'usempi': True} + +source_urls = ['https://github.com/opencollab/arpack-ng/archive/'] +sources = ['%(version)s.tar.gz'] + +builddependencies = [('Autotools', '20150215', '', ('GCC', '4.9.3-2.25'))] + +preconfigopts = "sh bootstrap && " +configopts = '--with-pic --with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK"' + +sanity_check_paths = { + 'files': ["lib/libarpack.a", "lib/libarpack.so"], + 'dirs': [] +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/b/BBMap/BBMap-35.82-foss-2015b-Java-1.8.0_66.eb b/easybuild/easyconfigs/b/BBMap/BBMap-35.82-foss-2015b-Java-1.8.0_66.eb new file mode 100644 index 0000000000000000000000000000000000000000..cd21d99d6dc351766a83e5d327afc2b04a1fcd5d --- /dev/null +++ b/easybuild/easyconfigs/b/BBMap/BBMap-35.82-foss-2015b-Java-1.8.0_66.eb @@ -0,0 +1,36 @@ +easyblock = 'MakeCp' + +name = 'BBMap' +version = '35.82' + +homepage = 'https://sourceforge.net/projects/bbmap/' +description = """BBMap short read aligner, and other bioinformatic tools.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%(name)s_%(version)s.tar.gz' ] + +java = 'Java' +javaver = '1.8.0_66' +versionsuffix = '-%s-%s' % (java, javaver) +dependencies = [(java, javaver, '', True)] + +prebuildopts = 'cd jni && ' + +suff = {'Darwin': 'osx', 'Linux': 'linux'}[OS_TYPE] +buildopts = "-f makefile.%s" % suff + +files_to_copy = ['*'] + +sanity_check_paths = { + 'files': ['bbmap.sh'], + 'dirs': [] +} + +modextrapaths = {'PATH': ''} + +modloadmsg = """For improved speed, add 'usejni=t' to the command line of %(name)s tools which support the use of the + compiled jni C code.""" + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BBMap/BBMap-35.82-foss-2015b-Java-1.8.0_74.eb b/easybuild/easyconfigs/b/BBMap/BBMap-35.82-foss-2015b-Java-1.8.0_74.eb new file mode 100644 index 0000000000000000000000000000000000000000..dff5ba78e2147f145ff3dbd825d9c76cafac3dfc --- /dev/null +++ b/easybuild/easyconfigs/b/BBMap/BBMap-35.82-foss-2015b-Java-1.8.0_74.eb @@ -0,0 +1,36 @@ +easyblock = 'MakeCp' + +name = 'BBMap' +version = '35.82' + +homepage = 'https://sourceforge.net/projects/bbmap/' +description = """BBMap short read aligner, and other bioinformatic tools.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%(name)s_%(version)s.tar.gz' ] + +java = 'Java' +javaver = '1.8.0_74' +versionsuffix = '-%s-%s' % (java, javaver) +dependencies = [(java, javaver, '', True)] + +prebuildopts = 'cd jni && ' + +suff = {'Darwin': 'osx', 'Linux': 'linux'}[OS_TYPE] +buildopts = "-f makefile.%s" % suff + +files_to_copy = ['*'] + +sanity_check_paths = { + 'files': ['bbmap.sh'], + 'dirs': [] +} + +modextrapaths = {'PATH': ''} + +modloadmsg = """For improved speed, add 'usejni=t' to the command line of %(name)s tools which support the use of the + compiled jni C code.""" + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-foss-2015a.eb b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-foss-2015a.eb index 7aa9dcdd5bb9ef427aa35ef7ef9b3ca737190bdb..2ee4f6221607759d9e9abc625910ca00fc599073 100644 --- a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-foss-2015a.eb +++ b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-foss-2015a.eb @@ -20,7 +20,7 @@ dependencies = [ ('zlib', '1.2.8'), ] -parallel = 1 +parallel = 1 skipsteps = ['configure'] @@ -28,7 +28,7 @@ installopts = ' prefix=%(installdir)s' postinstallcmds = [ 'mkdir -p %(installdir)s/lib/plugins', - 'cp plugins/*.so %(installdir)s/lib/plugins/.', + 'cp -a plugins/*.so %(installdir)s/lib/plugins/.', ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-intel-2015a.eb b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-intel-2015a.eb index c997c54557f881c6dbbeb50775b98826f656f5cc..f9319eca14c9ad0a98ecc06c96987eb6eeca51fd 100644 --- a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-intel-2015a.eb +++ b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.2-intel-2015a.eb @@ -20,7 +20,7 @@ dependencies = [ ('zlib', '1.2.8'), ] -parallel = 1 +parallel = 1 skipsteps = ['configure'] @@ -28,7 +28,7 @@ installopts = ' prefix=%(installdir)s' postinstallcmds = [ 'mkdir -p %(installdir)s/lib/plugins', - 'cp plugins/*.so %(installdir)s/lib/plugins/.', + 'cp -a plugins/*.so %(installdir)s/lib/plugins/.', ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.3-intel-2016a.eb b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.3-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..bd1b04228ad5d8688b0adb35bfa1817fcad47f32 --- /dev/null +++ b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.3-intel-2016a.eb @@ -0,0 +1,41 @@ +easyblock = 'ConfigureMake' + +name = 'BCFtools' +version = '1.3' + +homepage = 'http://www.htslib.org/' +description = """Samtools is a suite of programs for interacting with high-throughput sequencing data. + BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] + +patches = ['BCFtools-%(version)s_extHTSlib_Makefile.patch'] + +dependencies = [ + ('zlib', '1.2.8'), + ('HTSlib', '1.3'), + ('GSL', '2.1'), +] + +parallel = 1 + +skipsteps = ['configure'] + +buildopts = 'CC="$CC" CFLAGS="$CFLAGS" USE_GSL=1' +installopts = ' prefix=%(installdir)s' + +postinstallcmds = [ + 'mkdir -p %(installdir)s/lib/plugins', + 'cp -a plugins/*.so %(installdir)s/lib/plugins/.', +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['bcftools', 'plot-vcfstats', 'vcfutils.pl']], + 'dirs': ['lib/plugins'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BCFtools/BCFtools-1.3_extHTSlib_Makefile.patch b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.3_extHTSlib_Makefile.patch new file mode 100644 index 0000000000000000000000000000000000000000..e8a56d6411b04d5b18f13b7e5c7eed5f4a1f455b --- /dev/null +++ b/easybuild/easyconfigs/b/BCFtools/BCFtools-1.3_extHTSlib_Makefile.patch @@ -0,0 +1,38 @@ +patch Makefile to pick up HTSlib, GSL and zlib provided thorugh EasyBuild +author: Kenneth Hoste (HPC-UGent) +--- bcftools-1.3/Makefile.orig 2015-12-15 22:58:35.000000000 +0100 ++++ bcftools-1.3/Makefile 2016-03-02 15:22:03.656821071 +0100 +@@ -29,11 +29,10 @@ + all: $(PROG) $(TEST_PROG) + + # Adjust $(HTSDIR) to point to your top-level htslib directory +-HTSDIR = htslib-1.3 +-include $(HTSDIR)/htslib.mk +-HTSLIB = $(HTSDIR)/libhts.a +-BGZIP = $(HTSDIR)/bgzip +-TABIX = $(HTSDIR)/tabix ++HTSDIR = $(EBROOTHTSLIB)/include ++HTSLIB = $(EBROOTHTSLIB)/lib/libhts.a ++BGZIP = $(EBROOTHTSLIB)/bin/bgzip ++TABIX = $(EBROOTHTSLIB)/bin/tabix + + CC = gcc + CPPFLAGS = +@@ -57,7 +56,7 @@ + ifdef USE_GPL + EXTRA_CPPFLAGS += -DUSE_GPL + OBJS += polysomy.o peakfit.o +- GSL_LIBS = -lgsl -lcblas ++ GSL_LIBS = -L${EBROOTGSL}/lib -lgsl -lcblas + endif + + prefix = /usr/local +@@ -181,7 +180,7 @@ + $(CC) $(LDFLAGS) -o $@ $^ -lm $(LIBS) + + bcftools: $(HTSLIB) $(OBJS) +- $(CC) -rdynamic $(LDFLAGS) -o $@ $(OBJS) $(HTSLIB) -lpthread -lz -lm -ldl $(GSL_LIBS) $(LIBS) ++ $(CC) -rdynamic $(LDFLAGS) -o $@ $(OBJS) $(HTSLIB) -lpthread -L${EBROOTZLIB}/lib -lz -lm -ldl $(GSL_LIBS) $(LIBS) + + doc/bcftools.1: doc/bcftools.txt + cd doc && a2x -adate="$(DOC_DATE)" -aversion=$(DOC_VERSION) --doctype manpage --format manpage bcftools.txt diff --git a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb index 798d558246865467d774545a1605302db1b04306..ffd5f8b8e630d465071f385dd7dacc1b5d84c3ad 100644 --- a/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/b/BEDOPS/BEDOPS-2.4.2-GCC-4.8.2.eb @@ -12,7 +12,7 @@ version = "2.4.2" homepage = 'https://github.com/bedops/bedops' description = """ BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, - archiving, conversion and other management of genomic data of arbitrary scale.""" + archiving, conversion and other management of genomic data of arbitrary scale.""" # this application requires GCC-4.8.x or higher # be aware if you switch to a different toolchain @@ -28,9 +28,9 @@ parallel = 1 files_to_copy = ["bin"] sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["bedmap", "bam2bed" , "sort-bed", - "starchcat", "vcf2bed", "wig2bed", - "gtf2bed", "bedops", "wig2bed"]], + 'files': ["bin/%s" % x for x in ["bedmap", "bam2bed", "sort-bed", + "starchcat", "vcf2bed", "wig2bed", + "gtf2bed", "bedops", "wig2bed"]], 'dirs': [] } diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb index ba457aaa3a2497fe367847eaa6482cce94c2f8cd..0c8d3ca6a1c24e169e90088e936eb6fd8cde1545 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-goolf-1.4.10.eb @@ -18,7 +18,7 @@ buildopts = 'CXX="$CXX"' files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'README.rst'] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], + 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed', 'bedToBam', 'fastaFromBed']], 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test'], } diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb index e21399a89778f1d48d675b852cb750917a69690d..dc8e5c74f17b53a318c87ca83861bc6d5e5e9331 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.17.0-ictce-4.1.13.eb @@ -18,7 +18,7 @@ buildopts = 'CXX="$CXX"' files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'README.rst'] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], + 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed', 'bedToBam', 'fastaFromBed']], 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test'], } diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb index 3d93f1ffe1d2274c17d70f02736e23cba4eb1d6b..f0c69050e7172bbf95f628aa68bb35b996ec7b5d 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.18.1-goolf-1.4.10.eb @@ -22,7 +22,7 @@ buildopts = 'CXX="$CXX"' files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'README.rst'] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], + 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed', 'bedToBam', 'fastaFromBed']], 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test'], } diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb index 91498fff43556f51f360ca826bc0dd9ca8a00ba9..f644a6657686c114296cc4b0e172b955c808334d 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.19.1-goolf-1.4.10.eb @@ -1,6 +1,6 @@ # Author: Pablo Escobar Lopez; Wiktor Jurkowski # Swiss Institute of Bioinformatics (SIB), Biozentrum - University of Basel -# Babraham Institute, UK +# Babraham Institute, UK easyblock = 'MakeCp' @@ -20,7 +20,7 @@ sources = ['v%(version)s.tar.gz'] files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'README.md'] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], + 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed', 'bedToBam', 'fastaFromBed']], 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test'], } diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb index 92af179960d7019463ee8751221e55596cf353e3..7133a6b8a4cbc30a5a1540b90ea498d7d7bbc594 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.22.0-intel-2014b.eb @@ -22,7 +22,7 @@ buildopts = 'CXX="$CXX"' files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'README.md'] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], + 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed', 'bedToBam', 'fastaFromBed']], 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test'], } diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-goolf-1.4.10.eb index 0c511d17e03a4508bcc0a4173ccbf2f508b61b60..2f9e862e72a8f0d18800672274c85c8e163ad7b4 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ # Author: Maxime Schmitt, University of Luxembourg -# +# # Based on the work of: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) # Biozentrum - University of Basel @@ -25,7 +25,7 @@ buildopts = 'CXX="$CXX"' files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], + 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed', 'bedToBam', 'fastaFromBed']], 'dirs': files_to_copy, } diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb index 6160ea742195a0232e6c6884074a6c8bfc8f2ce8..185d7a2d1a9635241f1822b32c67aeeace26191e 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.23.0-intel-2015a.eb @@ -22,7 +22,7 @@ buildopts = 'CXX="$CXX"' files_to_copy = ['bin', 'docs', 'data', 'genomes', 'scripts', 'test', 'tutorial', 'README.md'] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], + 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed', 'bedToBam', 'fastaFromBed']], 'dirs': ['docs', 'data', 'genomes', 'scripts', 'test', 'tutorial'], } diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.25.0-foss-2015a.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.25.0-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..bcb3a9de52f027de6104eca8fa68271743448971 --- /dev/null +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.25.0-foss-2015a.eb @@ -0,0 +1,33 @@ +# Author: Maxime Schmitt, University of Luxembourg +# Author: Adam Huffman, The Francis Crick Institute +# +# Based on the work of: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics (SIB) +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'BEDTools' +version = '2.25.0' + +homepage = "https://github.com/arq5x/bedtools2" +description = """The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps + and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, + and SAM/BAM.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +# https://github.com/arq5x/bedtools2/releases/download/v2.25.0/bedtools-2.25.0.tar.gz +source_urls = ['https://github.com/arq5x/bedtools2/releases/download/v%(version)s/'] +sources = ['bedtools-%(version)s.tar.gz'] + +buildopts = 'CXX="$CXX"' + +files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed', 'bedToBam', 'fastaFromBed']], + 'dirs': files_to_copy, +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.25.0-goolf-1.7.20.eb b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.25.0-goolf-1.7.20.eb index dd1aec5c9264e916e3b02c050fc261913995855e..a4e3ce1eb7b51f517f308c80d4673dfdc22e66ee 100644 --- a/easybuild/easyconfigs/b/BEDTools/BEDTools-2.25.0-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/b/BEDTools/BEDTools-2.25.0-goolf-1.7.20.eb @@ -1,5 +1,5 @@ # Author: Maxime Schmitt, University of Luxembourg -# Author: Adam Huffman, The Francis Crick Institute +# Author: Adam Huffman, The Francis Crick Institute # # Based on the work of: Pablo Escobar Lopez # Swiss Institute of Bioinformatics (SIB) @@ -26,7 +26,7 @@ buildopts = 'CXX="$CXX"' files_to_copy = ["bin", "docs", "data", "genomes", "scripts", "test"] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed','bedToBam','fastaFromBed']], + 'files': ['bin/%s' % x for x in ['bedtools', 'pairToBed', 'mergeBed', 'bedToBam', 'fastaFromBed']], 'dirs': files_to_copy, } diff --git a/easybuild/easyconfigs/b/BEEF/BEEF-0.1.1-r16-intel-2015a.eb b/easybuild/easyconfigs/b/BEEF/BEEF-0.1.1-r16-intel-2015a.eb index 1b091e506f3a5427d0470e458f14f507571ebd32..0f53e3f3c38b46bf775eb726a5e3faad7dc95d4b 100644 --- a/easybuild/easyconfigs/b/BEEF/BEEF-0.1.1-r16-intel-2015a.eb +++ b/easybuild/easyconfigs/b/BEEF/BEEF-0.1.1-r16-intel-2015a.eb @@ -1,7 +1,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # Author: Benjamin P. Roberts # New Zealand eScience Infrastructure -# The University of Auckland, Auckland, New Zealand +# The University of Auckland, Auckland, New Zealand easyblock = 'ConfigureMake' diff --git a/easybuild/easyconfigs/b/BEEF/BEEF-0.1.1-r16-iomkl-4.6.13.eb b/easybuild/easyconfigs/b/BEEF/BEEF-0.1.1-r16-iomkl-4.6.13.eb index 5f300eb8ed8cd1d326b973426e6c0566235b7fff..ea0ea197541b5f703bf5e7b3d51f928658637188 100644 --- a/easybuild/easyconfigs/b/BEEF/BEEF-0.1.1-r16-iomkl-4.6.13.eb +++ b/easybuild/easyconfigs/b/BEEF/BEEF-0.1.1-r16-iomkl-4.6.13.eb @@ -1,7 +1,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # Author: Benjamin P. Roberts # New Zealand eScience Infrastructure -# The University of Auckland, Auckland, New Zealand +# The University of Auckland, Auckland, New Zealand easyblock = 'ConfigureMake' diff --git a/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.7.20.eb b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.7.20.eb new file mode 100644 index 0000000000000000000000000000000000000000..a5c3af2f9a7bd3ce2ede0ede475c0da9fe1246f0 --- /dev/null +++ b/easybuild/easyconfigs/b/BFAST/BFAST-0.7.0a-goolf-1.7.20.eb @@ -0,0 +1,40 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'ConfigureMake' + +name = 'BFAST' +version = '0.7.0a' + +homepage = 'http://bfast.sourceforge.net/' +description = """BFAST facilitates the fast and accurate mapping of short reads to reference sequences. + Some advantages of BFAST include: + 1) Speed: enables billions of short reads to be mapped quickly. + 2) Accuracy: A priori probabilities for mapping reads with defined set of variants. + 3) An easy way to measurably tune accuracy at the expense of speed.""" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} + +import string +swdir = version.rstrip(string.lowercase + string.uppercase) +# eg. http://sourceforge.net/projects/bfast/files/bfast/0.7.0/bfast-0.7.0a.tar.gz/download +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://sourceforge.net/projects/bfast/files/bfast/%s/' % swdir, 'download'] + +dependencies = [('bzip2', '1.0.6')] + +sanity_check_paths = { + 'files': ["bin/bfast"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BH/BH-1.60.0-1-foss-2015b-R-3.2.3.eb b/easybuild/easyconfigs/b/BH/BH-1.60.0-1-foss-2015b-R-3.2.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..16cdd37dda616f97ff392987766e98f595458ea2 --- /dev/null +++ b/easybuild/easyconfigs/b/BH/BH-1.60.0-1-foss-2015b-R-3.2.3.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Author: Adam Huffman +# The Francis Crick Institute + +easyblock = 'RPackage' + +name = 'BH' +version = '1.60.0-1' + +homepage = 'http://cran.r-project.org/web/packages/%(name)s' +description = """BH: Boost C++ Header Files for R""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = [ + 'http://cran.r-project.org/src/contrib/', + 'http://cran.r-project.org/src/contrib/Archive/$(name)s/', +] +sources = ['%(name)s_%(version)s.tar.gz'] + +r = 'R' +rver = '3.2.3' +versionsuffix = '-%s-%s' % (r, rver) + +dependencies = [ + (r, rver), + ('Boost', '1.60.0'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['BH'], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/BLASR/BLASR-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLASR/BLASR-2.1-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..7b47764f4758e9a58c3799462d24c2eb6e6f480b --- /dev/null +++ b/easybuild/easyconfigs/b/BLASR/BLASR-2.1-goolf-1.4.10.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'BLASR' +version = '2.1' + +homepage = 'https://github.com/PacificBiosciences/blasr' +description = """ BLASR (Basic Local Alignment with Successive Refinement) rapidly maps + reads to genomes by finding the highest scoring local alignment or set of local alignments + between the read and the genome. Optimized for PacBio's extraordinarily long reads and + taking advantage of rich quality values, BLASR maps reads rapidly with high accuracy. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['https://github.com/PacificBiosciences/blasr/archive/'] +sources = ['smrtanalysis-%(version)s.tar.gz'] + +dependencies = [('HDF5', '1.8.11')] + +skipsteps = ['configure'] + +# the STATIC= option is a workaround. Check details here: +# https://github.com/PacificBiosciences/blasr/issues/4#issuecomment-44142749 +buildopts = ' STATIC= ' + +installopts = ' INSTALL_BIN_DIR=%(installdir)s/bin' + +sanity_check_paths = { + 'files': ["bin/blasr"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb index 8129083a064d320a0e7ec6dc1b8a21dcea6964b1..3d76340994583f9b78c44d794b5f1d780a35a901 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goalf-1.1.0-no-OFED.eb @@ -30,8 +30,8 @@ dependencies = [('Boost', '1.51.0')] configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' sanity_check_paths = { - 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], - 'dirs': [] - } + 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb index e7772ac7282bd2f4381ffee810fe41375082acc6..d441a3b6be2182b42bc4614298b588eb2f11202e 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-goolf-1.4.10.eb @@ -30,8 +30,8 @@ dependencies = [('Boost', '1.51.0')] configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' sanity_check_paths = { - 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], - 'dirs': [] - } + 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb index 3800356ed9249faa0e893116157e57a2444ed54e..5d3bf8464428aa448b88fdb7b886ee05598ef69e 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.27-ictce-4.0.6.eb @@ -32,8 +32,8 @@ dependencies = [('Boost', '1.51.0')] configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' sanity_check_paths = { - 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], - 'dirs': [] - } + 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb index d52c0aba661b1b97e2c9f6db82e1c409f505e5d8..0da49b06b6fc190d2330b2df278cd22bf82912e7 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-goolf-1.4.10.eb @@ -30,8 +30,8 @@ dependencies = [('Boost', '1.51.0')] configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' sanity_check_paths = { - 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], - 'dirs': [] - } + 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb index adcf957193c7c994e6fae70f3517e29b6ccdfec8..9a1f3c026948fd633558c646d9126c741eae66f6 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.28-ictce-4.1.13.eb @@ -32,8 +32,8 @@ dependencies = [('Boost', '1.51.0')] configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' sanity_check_paths = { - 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], - 'dirs': [] - } + 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb index 37178f8aa58e052452669f9684430d441e5d8e1b..8c97b6b7aa34984d31b4bb6a59d7eba05e5d3f4c 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-foss-2015a-Python-2.7.9.eb @@ -38,4 +38,3 @@ sanity_check_paths = { } moduleclass = 'bio' - diff --git a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb index 505c849588b88ff2df569d36eee39444a26c2926..5daf7c4b33652f1117e651bd5450395954047855 100644 --- a/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BLAST+/BLAST+-2.2.30-goolf-1.4.10.eb @@ -37,4 +37,3 @@ sanity_check_paths = { } moduleclass = 'bio' - diff --git a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.26-Linux_x86_64.eb b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.26-Linux_x86_64.eb index 7b97564a4d72ced37ae0457b52eddf821d106413..22babb46e9e36ae27d48862030dd750426baad55 100644 --- a/easybuild/easyconfigs/b/BLAST/BLAST-2.2.26-Linux_x86_64.eb +++ b/easybuild/easyconfigs/b/BLAST/BLAST-2.2.26-Linux_x86_64.eb @@ -20,7 +20,7 @@ source_urls = ['http://ftp.ncbi.nlm.nih.gov/blast/executables/release/%(version) sources = ['%(namelower)s-%(version)s-x64-linux.tar.gz'] sanity_check_paths = { - 'files': ["bin/blastall", "bin/impala", "bin/blastpgp" ], + 'files': ["bin/blastall", "bin/impala", "bin/blastpgp"], 'dirs': [] } diff --git a/easybuild/easyconfigs/b/BOINC/BOINC-7.0.65-goolf-1.4.10-client.eb b/easybuild/easyconfigs/b/BOINC/BOINC-7.0.65-goolf-1.4.10-client.eb index ba1d06a7ffe10b84715c2d2f842afc0d19b58c9d..38d7535bfad1700adcda76c5019bb52d208dc271 100644 --- a/easybuild/easyconfigs/b/BOINC/BOINC-7.0.65-goolf-1.4.10-client.eb +++ b/easybuild/easyconfigs/b/BOINC/BOINC-7.0.65-goolf-1.4.10-client.eb @@ -16,8 +16,8 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} sources = [SOURCELOWER_TAR_BZ2] dependencies = [ - ('OpenSSL','1.0.1f'), - ('cURL','7.29.0'), + ('OpenSSL', '1.0.1f'), + ('cURL', '7.29.0'), ] with_configure = True @@ -29,9 +29,8 @@ files_to_copy = [(['client/boin*[cd]'], 'bin')] # make sure the binary are available after installation sanity_check_paths = { - 'files': ["bin/boinc", "bin/boinccmd"], + 'files': ['bin/boinc', 'bin/boinccmd'], 'dirs': [], } moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/b/BOINC/BOINC-7.2.42-GCC-4.8.2-client.eb b/easybuild/easyconfigs/b/BOINC/BOINC-7.2.42-GCC-4.8.2-client.eb index 599b616ab9f4639c8a82e2021dc59c236d688fa4..be4ba09c0d868003c7336319b3ab65970b8fa071 100644 --- a/easybuild/easyconfigs/b/BOINC/BOINC-7.2.42-GCC-4.8.2-client.eb +++ b/easybuild/easyconfigs/b/BOINC/BOINC-7.2.42-GCC-4.8.2-client.eb @@ -16,17 +16,17 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} sources = [SOURCELOWER_TAR_BZ2] dependencies = [ - ('OpenSSL','1.0.1f'), - ('cURL','7.34.0'), + ('OpenSSL', '1.0.1f'), + ('cURL', '7.34.0'), ] builddependencies = [ - ('libtool','2.4.2'), - ('make','3.82'), - ('pkg-config','0.28'), - ('M4','1.4.16'), - ('Autoconf','2.69'), - ('Automake','1.14.1') + ('libtool', '2.4.2'), + ('make', '3.82'), + ('pkg-config', '0.28'), + ('M4', '1.4.16'), + ('Autoconf', '2.69'), + ('Automake', '1.14.1') ] prebuildopts = "./_autosetup && ./configure --disable-server --disable-manager --enable-client &&" @@ -35,9 +35,8 @@ files_to_copy = [(['client/boinc', 'client/boinccmd'], 'bin')] # make sure the binary are available after installation sanity_check_paths = { - 'files': ["bin/boinc",], + 'files': ['bin/boinc'], 'dirs': [], } moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/b/BOINC/BOINC-7.2.42-ictce-5.5.0-client.eb b/easybuild/easyconfigs/b/BOINC/BOINC-7.2.42-ictce-5.5.0-client.eb index bc81b334dec4c3bdcc913b7c81d7d91bccc4ba5d..66f39d890d91e8b3fa0f762c3feaecce76e54004 100644 --- a/easybuild/easyconfigs/b/BOINC/BOINC-7.2.42-ictce-5.5.0-client.eb +++ b/easybuild/easyconfigs/b/BOINC/BOINC-7.2.42-ictce-5.5.0-client.eb @@ -16,17 +16,17 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} sources = [SOURCELOWER_TAR_BZ2] dependencies = [ - ('OpenSSL','1.0.1f'), - ('cURL','7.34.0'), + ('OpenSSL', '1.0.1f'), + ('cURL', '7.34.0'), ] builddependencies = [ - ('libtool','2.4.2'), - ('make','3.82'), - ('pkg-config','0.28'), - ('M4','1.4.16'), - ('Autoconf','2.69'), - ('Automake','1.14') + ('libtool', '2.4.2'), + ('make', '3.82'), + ('pkg-config', '0.28'), + ('M4', '1.4.16'), + ('Autoconf', '2.69'), + ('Automake', '1.14') ] prebuildopts = "./_autosetup && ./configure --disable-server --disable-manager --enable-client &&" @@ -35,9 +35,8 @@ files_to_copy = [(['client/boinc', 'client/boinccmd'], 'bin')] # make sure the binary are available after installation sanity_check_paths = { - 'files': ["bin/boinc",], + 'files': ['bin/boinc'], 'dirs': [], } moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/b/BSMAP/BSMAP-2.74-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BSMAP/BSMAP-2.74-goolf-1.4.10.eb index 1318374418384cf7a77e6cb10572e1311f0264e2..400f14ed066ca6912f8c3c42780b7477ae1185fc 100644 --- a/easybuild/easyconfigs/b/BSMAP/BSMAP-2.74-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BSMAP/BSMAP-2.74-goolf-1.4.10.eb @@ -1,4 +1,4 @@ -easyblock = 'ConfigureMake' +easyblock = 'ConfigureMake' name = 'BSMAP' version = '2.74' @@ -13,23 +13,23 @@ sources = [SOURCELOWER_TGZ] skipsteps = ['configure'] -installopts = "DESTDIR=%(installdir)s" +installopts = "DESTDIR=%(installdir)s" patches = [ - 'BSMAP-2.74_makefile-modif.patch', - 'BSMAP-2.74_parameters-cpp.patch', - 'BSMAP-2.74_samtools-deps.patch', + 'BSMAP-2.74_makefile-modif.patch', + 'BSMAP-2.74_parameters-cpp.patch', + 'BSMAP-2.74_samtools-deps.patch', ] dependencies = [ - ('ncurses', '5.9'), - ('zlib', '1.2.7'), - ('SAMtools', '0.1.18'), + ('ncurses', '5.9'), + ('zlib', '1.2.7'), + ('SAMtools', '0.1.18'), ] sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["bsmap", "methratio.py", "sam2bam.sh"]], - 'dirs': [], + 'files': ["bin/%s" % x for x in ["bsmap", "methratio.py", "sam2bam.sh"]], + 'dirs': [], } moduleclass = 'data' diff --git a/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2015b.eb b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..2018ca59b4f298deced95a8d4977d0102fc039ef --- /dev/null +++ b/easybuild/easyconfigs/b/BWA/BWA-0.7.13-foss-2015b.eb @@ -0,0 +1,32 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Cyprus Institute / CaSToRC, Uni.Lu/LCSB, NTUA +# Authors:: George Tsouloupas , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +# +# Version >= 0.7.13 +# Author: Adam Huffman +# The Francis Crick Institute +# +# Note that upstream development is mainly at: https://github.com/lh3/bwa +## + +name = 'BWA' +version = '0.7.13' + +homepage = 'http://bio-bwa.sourceforge.net/' +description = """Burrows-Wheeler Aligner (BWA) is an efficient program that aligns + relatively short nucleotide sequences against a long reference sequence such as the human genome.""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['https://github.com/lh3/%(name)s/archive/'] +sources = ['v%(version)s.tar.gz'] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2015b.eb b/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..9e9c2961a5d7adfaf53fe8f3df774c7fdda630a9 --- /dev/null +++ b/easybuild/easyconfigs/b/BamTools/BamTools-2.4.0-foss-2015b.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 The Cyprus Institute +# Authors:: Andreas Panteli , George Tsouloupas +# License:: MIT/GPL +# +## + +name = 'BamTools' +version = '2.4.0' + +homepage = 'https://github.com/pezmaster31/bamtools' +description = """BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +sources = ['v%(version)s.tar.gz'] +source_urls = ['https://github.com/pezmaster31/bamtools/archive'] + +builddependencies = [('CMake', '3.4.1')] + +files_to_copy = ["bin", "lib", "include", "docs", "LICENSE", "README"] + +sanity_check_paths = { + 'files': ["bin/bamtools", "include/shared/bamtools_global.h", "lib/libbamtools.a", + "lib/libbamtools.so", "lib/libbamtools-utils.a", "lib/libjsoncpp.a"], + 'dirs': ["include/api", "docs"] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb index b2a23aa149ae6262433599eda1a963b289b30210..57dbb97a1af7ad0a50b87d22e58407d6b7a4a499 100644 --- a/easybuild/easyconfigs/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Bash/Bash-4.2-goalf-1.1.0-no-OFED.eb @@ -20,7 +20,7 @@ description = """Bash is an sh-compatible command language interpreter that exec read from the standard input or from a file. Bash also incorporates useful features from the Korn and C shells (ksh and csh).""" -toolchain = {'name' : 'goalf', 'version' : '1.1.0-no-OFED'} +toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb b/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb index d02188852b0208b1ca1e0a5274210ecfbbef37c1..3d11d3fad48d25103469214b3876c5759bbe9e7e 100644 --- a/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/b/Bash/Bash-4.3-GCC-4.9.2.eb @@ -1,13 +1,13 @@ ## -## This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild ## -## Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit -## Authors:: Valentin Plugaru -## License:: MIT/GPL -## $Id$ +# Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit +# Authors:: Valentin Plugaru +# License:: MIT/GPL +# $Id$ ## -## This work implements a part of the HPCBIOS project and is a component of the policy: -## http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html ### # easyblock = 'ConfigureMake' diff --git a/easybuild/easyconfigs/b/BayesTraits/BayesTraits-1.0-linux32.eb b/easybuild/easyconfigs/b/BayesTraits/BayesTraits-1.0-linux32.eb index 49c78aa1c48b4e74c221c0c12ddc0c01416639f6..8d561cd81b9141b1690e67afb350c62768770f20 100644 --- a/easybuild/easyconfigs/b/BayesTraits/BayesTraits-1.0-linux32.eb +++ b/easybuild/easyconfigs/b/BayesTraits/BayesTraits-1.0-linux32.eb @@ -27,6 +27,6 @@ sanity_check_paths = { 'dirs': [], } -modextrapaths = {'PATH':''} +modextrapaths = {'PATH': ''} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-Beta-Linux64.eb b/easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-Beta-Linux64.eb index 159ed9b248090a70f22d206eb23991b47a78f3b5..29cb55f2519ef5648562bc4475989931f17dc654 100644 --- a/easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-Beta-Linux64.eb +++ b/easybuild/easyconfigs/b/BayesTraits/BayesTraits-2.0-Beta-Linux64.eb @@ -28,6 +28,6 @@ sanity_check_paths = { 'dirs': [], } -modextrapaths = {'PATH':''} +modextrapaths = {'PATH': ''} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Beast/Beast-2.1.3.eb b/easybuild/easyconfigs/b/Beast/Beast-2.1.3.eb index b396cebf89e962bb3e2542441303ff3edae0adac..f28387fbee35d9206b62e42bdee6455bf7d64b3d 100644 --- a/easybuild/easyconfigs/b/Beast/Beast-2.1.3.eb +++ b/easybuild/easyconfigs/b/Beast/Beast-2.1.3.eb @@ -16,7 +16,7 @@ description = """ BEAST is a cross-platform program for Bayesian MCMC analysis o tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. """ -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} source_urls = ['http://github.com/CompEvol/beast2/releases/download/v%(version)s/'] sources = ['BEAST.v%(version)s.tgz'] @@ -25,13 +25,12 @@ dependencies = [ # this is not mandatory but beagle-lib is recommended by developers # beagle-lib will also load the required java dependency # if you remove this you should add the java dependency - ('beagle-lib', '20120124', '',('goolf', '1.4.10')), + ('beagle-lib', '20120124', '', ('goolf', '1.4.10')), ] sanity_check_paths = { - 'files': ["bin/beast" ], + 'files': ["bin/beast"], 'dirs': [] } moduleclass = 'bio' - diff --git a/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.923-intel-2015b-Perl-5.20.3.eb b/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.923-intel-2015b-Perl-5.20.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..0b4fbe276afb57d45704be5a44aa7df3409d4c0e --- /dev/null +++ b/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.923-intel-2015b-Perl-5.20.3.eb @@ -0,0 +1,23 @@ +easyblock = 'PerlModule' + +name = 'BioPerl' +version = '1.6.923' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'http://www.bioperl.org/' +description = """Bioperl is the product of a community effort to produce Perl code which is useful in biology. + Examples include Sequence objects, Alignment objects and database searching objects.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['https://github.com/bioperl/bioperl-live/archive/'] +sources = ['release-%s.tar.gz' % version.replace('.', '-')] + +dependencies = [ + ('Perl', '5.20.3'), + ('DB_File', '1.831', versionsuffix), +] + +options = {'modulename': 'Bio::Perl'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.924-intel-2016a-Perl-5.20.3.eb b/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.924-intel-2016a-Perl-5.20.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..4145ed2b911e0e6382205416d8fb30ce6d714acf --- /dev/null +++ b/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.924-intel-2016a-Perl-5.20.3.eb @@ -0,0 +1,23 @@ +easyblock = 'PerlModule' + +name = 'BioPerl' +version = '1.6.924' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'http://www.bioperl.org/' +description = """Bioperl is the product of a community effort to produce Perl code which is useful in biology. + Examples include Sequence objects, Alignment objects and database searching objects.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['https://github.com/bioperl/bioperl-live/archive/'] +sources = ['release-%s.tar.gz' % version.replace('.', '-')] + +dependencies = [ + ('Perl', '5.20.3'), + ('DB_File', '1.835', versionsuffix), +] + +options = {'modulename': 'Bio::Perl'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.61-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.61-goolf-1.4.10-Python-2.7.3.eb index d287d5529257274eaa616b6e1b6714aa1921afa1..a3dca17749044c2d2dbbcbb0b641dd26b1d1044f 100644 --- a/easybuild/easyconfigs/b/Biopython/Biopython-1.61-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.61-goolf-1.4.10-Python-2.7.3.eb @@ -35,10 +35,9 @@ dependencies = [ sanity_check_paths = { 'files': [], - 'dirs': ['lib/python%s/site-packages/Bio' % pyshortver, - 'lib/python%s/site-packages/biopython-%s-py%s.egg-info' % (pyshortver, version,\ - pyshortver), - 'lib/python%s/site-packages/BioSQL' % pyshortver] + 'dirs': ['lib/python%s/site-packages/Bio' % pyshortver, + 'lib/python%s/site-packages/biopython-%s-py%s.egg-info' % (pyshortver, version, pyshortver), + 'lib/python%s/site-packages/BioSQL' % pyshortver] } options = {'modulename': 'Bio'} diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.61-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.61-ictce-5.3.0-Python-2.7.3.eb index eca39ee0dfb3c8bf87dbfefd86ab4c6412df8e82..5efa64f0e0b39bd4ac7c2fa8a4df92ab46a30d76 100644 --- a/easybuild/easyconfigs/b/Biopython/Biopython-1.61-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.61-ictce-5.3.0-Python-2.7.3.eb @@ -35,10 +35,9 @@ dependencies = [ sanity_check_paths = { 'files': [], - 'dirs': ['lib/python%s/site-packages/Bio' % pyshortver, - 'lib/python%s/site-packages/biopython-%s-py%s.egg-info' % (pyshortver, version,\ - pyshortver), - 'lib/python%s/site-packages/BioSQL' % pyshortver] + 'dirs': ['lib/python%s/site-packages/Bio' % pyshortver, + 'lib/python%s/site-packages/biopython-%s-py%s.egg-info' % (pyshortver, version, pyshortver), + 'lib/python%s/site-packages/BioSQL' % pyshortver] } options = {'modulename': 'Bio'} diff --git a/easybuild/easyconfigs/b/Bismark/Bismark-0.10.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bismark/Bismark-0.10.1-goolf-1.4.10.eb index 337980614fbfd664844ef62098e2f683b84c0ed5..ee96cc0a43c6030bc536708e453d08065a74d3aa 100644 --- a/easybuild/easyconfigs/b/Bismark/Bismark-0.10.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bismark/Bismark-0.10.1-goolf-1.4.10.eb @@ -18,14 +18,14 @@ determine cytosine methylation states""" toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ["http://www.bioinformatics.babraham.ac.uk/projects/bismark/"] -sources = ['%s_v%s.tar.gz' % (name.lower(), version) ] +sources = ['%(namelower)s_v%(version)s.tar.gz'] dependencies = [('Bowtie2', '2.0.2')] sanity_check_paths = { - 'files': ["bismark", "bismark2bedGraph", "bismark2report", "bismark_genome_preparation", - "bismark_methylation_extractor", "coverage2cytosine", "deduplicate_bismark"], - 'dirs': [], -} + 'files': ["bismark", "bismark2bedGraph", "bismark2report", "bismark_genome_preparation", + "bismark_methylation_extractor", "coverage2cytosine", "deduplicate_bismark"], + 'dirs': [], +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.4.0.eb b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..18dbc65289ce10574d7890ce4706c359a368c948 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-2.5-ictce-5.4.0.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '2.5' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + + +toolchain = {'name': 'ictce', 'version': '5.4.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.16')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.5.14.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.5.14.eb index de2474fb3b4a1849be5c0c5017821d285b3eb1b4..4c523b02e611305fc07d8361641917779fa80f5b 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-goolf-1.5.14.eb @@ -7,7 +7,7 @@ homepage = 'http://www.gnu.org/software/bison' description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" -toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchain = {'name': 'goolf', 'version': '1.5.14'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-iccifort-2011.13.367.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-iccifort-2011.13.367.eb index 6f79524592e59001e11c55950ecac6af08208a23..0971fbca29a3c27148b6c08b111eec70183a52f2 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-iccifort-2011.13.367.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-iccifort-2011.13.367.eb @@ -15,8 +15,8 @@ source_urls = [GNU_SOURCE] builddependencies = [('M4', '1.4.16')] sanity_check_paths = { - 'files':["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], - 'dirs':[], + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], } moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-4.1.13.eb b/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-4.1.13.eb index 1345612aec5751bfa28e80b6b940f56b3e8cc8e2..a47f4cfdd82fb53ae1968092c6c8e834b2ad1f27 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-2.7-ictce-4.1.13.eb @@ -15,8 +15,8 @@ source_urls = [GNU_SOURCE] builddependencies = [('M4', '1.4.16')] sanity_check_paths = { - 'files':["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], - 'dirs':[], + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], } moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-2015.06-XC.eb similarity index 90% rename from easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.1.29.eb rename to easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-2015.06-XC.eb index 96873ab500996b03701faff43084216244b6516b..77bb4a043c6890614f7d515fffc37c0f3e507e9d 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-2015.06-XC.eb @@ -7,7 +7,7 @@ homepage = 'http://www.gnu.org/software/bison' description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-2015.11-XC.eb similarity index 90% rename from easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.25.eb rename to easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-2015.11-XC.eb index 79f11b47febbc88d82227cb3efb9850a95bf2792..cfb18be138f7c0e6fec969bd32021b12d6ac2311 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-2015.11-XC.eb @@ -7,7 +7,7 @@ homepage = 'http://www.gnu.org/software/bison' description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-foss-2015a.eb similarity index 88% rename from easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.40.eb rename to easybuild/easyconfigs/b/Bison/Bison-3.0.4-foss-2015a.eb index 67832ccafa4b44022726c2857e00a032c70ba2de..b4eb8b24719d72f6d2a4e7861293fb09565db2a9 100644 --- a/easybuild/easyconfigs/b/Bison/Bison-3.0.2-CrayGNU-5.2.40.eb +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-foss-2015a.eb @@ -1,13 +1,13 @@ easyblock = 'ConfigureMake' name = 'Bison' -version = '3.0.2' +version = '3.0.4' homepage = 'http://www.gnu.org/software/bison' description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchain = {'name': 'foss', 'version': '2015a'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-foss-2015b.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..5555d066b86fd1db12bd3733c1609b500f7808ce --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-foss-2015b.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.4' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-foss-2016a.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..e479dbbdd8b50896d909e206d903739f849492f9 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-foss-2016a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.4' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'foss', 'version': '2016a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/Bison/Bison-3.0.4-intel-2016a.eb b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..df48dd47dd88b236915c4abd96d7e4d2e3d5c710 --- /dev/null +++ b/easybuild/easyconfigs/b/Bison/Bison-3.0.4-intel-2016a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'Bison' +version = '3.0.4' + +homepage = 'http://www.gnu.org/software/bison' +description = """Bison is a general-purpose parser generator that converts an annotated context-free grammar + into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [('M4', '1.4.17')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["bison", "yacc"]] + ["lib/liby.a"], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/BitSeq/BitSeq-0.7.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/BitSeq/BitSeq-0.7.0-goolf-1.4.10.eb index 82b02fc155de3aa2c5595e7d2e8547a9df397f84..5a270ebc00c4566c5666eb2464dc127706ae9165 100644 --- a/easybuild/easyconfigs/b/BitSeq/BitSeq-0.7.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/BitSeq/BitSeq-0.7.0-goolf-1.4.10.eb @@ -23,9 +23,9 @@ sources = [SOURCE_TAR_GZ] # put here the list of generated executables when compiling list_of_executables = ["convertSamples", "estimateDE", "estimateExpression", "estimateHyperPar", - "estimateVBExpression", "extractSamples", "getFoldChange", "getGeneExpression", - "getPPLR", "getVariance", "getWithinGeneExpression", "parseAlignment", - "transposeLargeFile", "getCounts.py", "extractTranscriptInfo.py"] + "estimateVBExpression", "extractSamples", "getFoldChange", "getGeneExpression", + "getPPLR", "getVariance", "getWithinGeneExpression", "parseAlignment", + "transposeLargeFile", "getCounts.py", "extractTranscriptInfo.py"] # this is the real EasyBuild line to copy all the executables to "bin" files_to_copy = [(list_of_executables, "bin")] diff --git a/easybuild/easyconfigs/b/BoltzTraP/BoltzTraP-1.2.5-intel-2016a.eb b/easybuild/easyconfigs/b/BoltzTraP/BoltzTraP-1.2.5-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..db484f3beb1e82ed979e2b51e6f8a1e32be5ed59 --- /dev/null +++ b/easybuild/easyconfigs/b/BoltzTraP/BoltzTraP-1.2.5-intel-2016a.eb @@ -0,0 +1,29 @@ +easyblock = 'MakeCp' + +name = 'BoltzTraP' +version = '1.2.5' + +homepage = 'http://www.icams.de/content/departments/cmat/boltztrap/' +description = """Boltzmann Transport Properties (BoltzTraP) is a program for calculating the semi-classic transport + coefficients.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +# download from http://www.icams.de/content/uploads/boltztrap/BoltzTraP.tar.bz2, and rename to include version +sources = [SOURCE_TAR_BZ2] +checksums = ['6623d4393bce2e178b073f75f283eee6'] + +skipsteps = ['configure'] + +start_dir = 'src' +parallel = 1 +buildopts = 'FC="${FC}" FOPT="$FFLAGS" LIBS="$LIBLAPACK"' + +files_to_copy = [(['BoltzTraP'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/BoltzTraP'], + 'dirs': [], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb index 41a9f3fdef693b5629a9595e1aace9e754bf7517..8bcb1abedd6c92e30eb2cf82721a097e6db4d6d8 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goalf-1.1.0-no-OFED.eb @@ -21,8 +21,8 @@ source_urls = ['http://www.coker.com.au/bonnie++/'] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sanity_check_paths = { - 'files': ['sbin/bonnie++'], - 'dirs': [] - } + 'files': ['sbin/bonnie++'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb index 28f31121d6edf50b5a30bb35a740a8ed6b5f3298..fd432782eb508d5decd0f0d83c6fdc9130aaef0a 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-goolf-1.4.10.eb @@ -21,8 +21,8 @@ source_urls = ['http://www.coker.com.au/bonnie++/'] toolchain = {'name': 'goolf', 'version': '1.4.10'} sanity_check_paths = { - 'files': ['sbin/bonnie++'], - 'dirs': [] - } + 'files': ['sbin/bonnie++'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb index 7b2aca1bc7457e91afa1c114a688f167bbd27bcb..f4e01e36bd64f7234278432296e24c8d75b63311 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-4.0.6.eb @@ -21,9 +21,8 @@ source_urls = ['http://www.coker.com.au/bonnie++/'] toolchain = {'version': '4.0.6', 'name': 'ictce'} sanity_check_paths = { - 'files': ['sbin/bonnie++'], - 'dirs': [] - } + 'files': ['sbin/bonnie++'], + 'dirs': [] +} moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb index 80cfb940afd439f8157acba3a2fcead5651cf9d6..c663871a9cbcb73d716966885b489c5b46475535 100644 --- a/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bonnie++/Bonnie++-1.03e-ictce-5.3.0.eb @@ -22,9 +22,8 @@ source_urls = ['http://www.coker.com.au/bonnie++/'] toolchain = {'name': 'ictce', 'version': '5.3.0'} sanity_check_paths = { - 'files': ['sbin/bonnie++'], - 'dirs': [] - } + 'files': ['sbin/bonnie++'], + 'dirs': [] +} moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.47.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Boost/Boost-1.47.0-goolf-1.4.10.eb index 93386e296d8c731b1d6653507c70095123bb4d54..3a571ac328af4d7f0ccde7319273b1f1da9e5ba2 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.47.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.47.0-goolf-1.4.10.eb @@ -19,6 +19,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 3a7a1118355b1bcaa3824088ef417949ffc975cf..38cca32ea790dd7750b8f1866dc67f5d0e6e564c 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -21,6 +21,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goolf-1.4.10-Python-2.7.3.eb index c961d98fd81d0dcc2d3c9564ae54c627f9aaf80c..26f6bca712d1b1b3988964cdf4c1192b0f6eb444 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goolf-1.4.10-Python-2.7.3.eb @@ -21,6 +21,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goolf-1.4.10-Python-2.7.5.eb index 99ad6a98dc2cfee870d121e73353eb50a1539c37..a28c67be7043f4cc84f2a78c9e49e4f394018e3b 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-goolf-1.4.10-Python-2.7.5.eb @@ -21,6 +21,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-ictce-4.0.6-Python-2.7.3.eb index 7e087bb042e754059481cb31070efb5e3f38f958..f6191d854fcf6ebcbe5292822347e5caa26adb9e 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-ictce-4.0.6-Python-2.7.3.eb @@ -23,6 +23,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-ictce-5.3.0-Python-2.7.3.eb index 3988e42a3d0263505efcd5b707a709ce3ec0c1b9..ea0b132e922878d0e5634836bfe2a2fc9e41a84b 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.49.0-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.49.0-ictce-5.3.0-Python-2.7.3.eb @@ -23,6 +23,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-gmpolf-1.4.8.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-gmpolf-1.4.8.eb index 6d898a6437a30dba725b798cd93463d2a2817e96..4d9a1a23d135bc6ea0591916467b76d4b6405628 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-gmpolf-1.4.8.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] -#maxparallel=1 +osdependencies = [('zlib-devel', 'zlib1g-dev')] +# maxparallel=1 moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb index d48b1c70a11c138cb458c383baf35e6cd4dc3801..26a0348c88afb09d48e57f65a76f5af74dcba144 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -21,6 +21,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goalf-1.1.0-no-OFED.eb index cb53c502fcf6bd0fdf889ded00a12e566c9b9fa7..5841132659194143c39a74af47e77d3473b1a858 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goalf-1.1.0-no-OFED.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goolf-1.4.10-Python-2.7.3.eb index 313d9d65c46c2e5d09875c222a4d380907b23a1f..95d230ca9d371916fdc8d4a577dd0c38149d6f68 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goolf-1.4.10-Python-2.7.3.eb @@ -21,6 +21,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goolf-1.4.10.eb index f5cc38969b0cd92e543e7e1845f9b464c91e5747..fe0aacf8ddb6b94477c80043af517c990a2588f6 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-goolf-1.4.10.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.0.6-Python-2.7.3.eb index b323695956a98552016bb7683495d8e60510f3cc..7d098018b7c36db2ed1d0ab666a059ccf56413cc 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.0.6-Python-2.7.3.eb @@ -23,6 +23,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.0.6.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.0.6.eb index 709900a2b0db7413075a1c7d50ae482beeff7596..20af60928b24cf8cf3d161f92b00ede17f3cf74a 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.0.6.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.1.13.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.1.13.eb index edcf74cbec7b0d9f0f2fdbc31299d4451b9386c9..9b9c1f416c810345bf3a20410e482ed3e6ee4433 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-4.1.13.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.2.0.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.2.0.eb index 97d8361b7ac5241d7f3fabda2a954e228814f676..078df28545e45a72eae1b3c641b4d2fa81432dce 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.2.0.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.3.0-Python-2.7.3.eb index 13e799e0760871ac02b0254c68437ae914e03084..c0d9d3958e2714a268a7eb244d987e18a23c2622 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.3.0-Python-2.7.3.eb @@ -23,6 +23,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.3.0.eb index b49e9e58e9021ec6f2b1a74d19dab4c529abfd38..016ded779dc1a6955f8e888c8ec9895f574154e9 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.51.0-ictce-5.3.0.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-goalf-1.5.12-no-OFED-Python-2.7.5.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-goalf-1.5.12-no-OFED-Python-2.7.5.eb index 403498d6f458c2dcd6c6e567700b1923e7fb0a2e..8177dfdfc776571aadf49646ddc7f792d17aed73 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-goalf-1.5.12-no-OFED-Python-2.7.5.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-goalf-1.5.12-no-OFED-Python-2.7.5.eb @@ -21,6 +21,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-goolf-1.4.10.eb index 6e295b56b64186b40ea84f54eb25308ed35e3106..90c4f9d0e59b111231bb36fbe97cec22a7944518 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-goolf-1.4.10.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-4.1.13-Python-2.7.3.eb index 354f0c72605ce48c02972a5c86a33e74f9942082..15ca81dd99b439875fd903194e1e0c0f13b8d5cb 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-4.1.13-Python-2.7.3.eb @@ -23,6 +23,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-4.1.13.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-4.1.13.eb index fad7f26ba91bd8d3e0959b4be7620ba8946e42b8..e59984e8e7123ac3400207943625f098243e82ce 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-4.1.13.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.2.0.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.2.0.eb index 472f8aa41f853e3a6eca237bc5189c1659349f08..6c8ec824c0217f31636f0abf941035df9ddda5ad 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.2.0.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0-Python-2.7.3.eb index b82fa3aec47588d8593133b25bfd700303a3fa0f..79d1f8548355c32d2fdb95deee92380e17814d1e 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0-Python-2.7.3.eb @@ -23,6 +23,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0-Python-2.7.5.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0-Python-2.7.5.eb index e55911ea5956bcd2d1c651b2a282cfbb54f7de9b..0ed130e7a2f01a3bc0fa54867761d191d04e4ed3 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0-Python-2.7.5.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0-Python-2.7.5.eb @@ -21,6 +21,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0.eb index a7526a054e181d7f95f9c84a1ea8075d92fa4e79..125204c6c15c08a20ee2473fda9eb9f214074eb0 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.3.0.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.5.0-Python-2.7.5.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.5.0-Python-2.7.5.eb index c3ef0179641b762130af8d66662444d71f65f1b8..d634055e6253f8e6dd239b70427fc2ca9db803bd 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.5.0-Python-2.7.5.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-5.5.0-Python-2.7.5.eb @@ -23,6 +23,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-6.2.5.eb b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-6.2.5.eb index 5d078f75268b921eb796823c3d035c0fb815f11b..2d3562ccc9e4217748cf6dad60cc72e36f1f637c 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.53.0-ictce-6.2.5.eb @@ -17,6 +17,6 @@ configopts = '--without-libraries=python' # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.55.0-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-foss-2015a-Python-2.7.9.eb index 88a81a73e9b2486a7faef4d0ec8caad67229c1f4..54a936cee57732bd2998e878f6b0b6d108cb5db8 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.55.0-foss-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-foss-2015a-Python-2.7.9.eb @@ -4,7 +4,7 @@ version = '1.55.0' homepage = 'http://www.boost.org/' description = """Boost provides free peer-reviewed portable C++ source libraries.""" -toolchain = {'name': 'foss', 'version': '2015a'} +toolchain = {'name': 'foss', 'version': '2015a'} toolchainopts = {'pic': True, 'usempi': True} source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-5.5.0-Python-2.7.6.eb index 87a7b60a53b52d85ed73016a85ad7c59466e1a2b..6436848a16fec65179ecef3650feef1c6f2f296f 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-5.5.0-Python-2.7.6.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-5.5.0-Python-2.7.6.eb @@ -23,6 +23,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb index d29dcc1cdae5e793c3855bd382c45bb5196889e9..005df0b62444787aa235591892d62610ba8495df 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-ictce-7.1.2-Python-2.7.8.eb @@ -23,6 +23,6 @@ dependencies = [ # also build boost_mpi boost_mpi = True -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2015a-Python-2.7.8.eb b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2015a-Python-2.7.8.eb index 39ae5a52a46c19071732360ee60d5f4224d005d5..4646d38d2166bd0d9ea87af762f34098dc868085 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2015a-Python-2.7.8.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.55.0-intel-2015a-Python-2.7.8.eb @@ -4,7 +4,7 @@ version = '1.55.0' homepage = 'http://www.boost.org/' description = """Boost provides free peer-reviewed portable C++ source libraries.""" -toolchain = {'name': 'intel', 'version': '2015a'} +toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'pic': True, 'usempi': True} source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.55.0.eb b/easybuild/easyconfigs/b/Boost/Boost-1.55.0.eb index fb5ddf01857867a9af2fac0eff274ba480b33b8c..9e85b84df70ef426c0a410077dd3602fef1eb1d8 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.55.0.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.55.0.eb @@ -16,6 +16,6 @@ configopts = '--without-libraries=python' toolset = 'gcc' -osdependencies = [('zlib-devel','zlib1g-dev')] +osdependencies = [('zlib-devel', 'zlib1g-dev')] moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.57.0-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-foss-2015a-Python-2.7.9.eb index 1c2ebd212d9ee7e9aef71812fb790e967ba36cec..944128c6d51f8c80ed5ce6f63447bfd6afe94fb2 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.57.0-foss-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-foss-2015a-Python-2.7.9.eb @@ -4,7 +4,7 @@ version = '1.57.0' homepage = 'http://www.boost.org/' description = """Boost provides free peer-reviewed portable C++ source libraries.""" -toolchain = {'name': 'foss', 'version': '2015a'} +toolchain = {'name': 'foss', 'version': '2015a'} toolchainopts = {'pic': True, 'usempi': True} source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.57.0-foss-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-foss-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..f89cb288d3edecdd7ec575b5c1c7d285cb3830fe --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-foss-2015b-Python-2.7.10.eb @@ -0,0 +1,25 @@ +name = 'Boost' +version = '1.57.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +pythonversion = '2.7.10' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.57.0-gimkl-2.11.5-Python-2.7.10.eb b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-gimkl-2.11.5-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..0efec2bdf2fc1096d7776dd86d8732dca72cbec6 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-gimkl-2.11.5-Python-2.7.10.eb @@ -0,0 +1,25 @@ +name = 'Boost' +version = '1.57.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'gimkl', 'version': '2.11.5'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +pythonversion = '2.7.10' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.57.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-intel-2015a-Python-2.7.9.eb index 84fbb7d38c94a5542d42e0f557cfd91df8452865..cf98c58fdf7cb4e5e68c8ecc5a062bd420423b23 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.57.0-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.57.0-intel-2015a-Python-2.7.9.eb @@ -4,7 +4,7 @@ version = '1.57.0' homepage = 'http://www.boost.org/' description = """Boost provides free peer-reviewed portable C++ source libraries.""" -toolchain = {'name': 'intel', 'version': '2015a'} +toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'pic': True, 'usempi': True} source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015a-Python-2.7.9.eb index bbef8b760b3ac8240f9078c2e2961fca0159d225..02c7922f8dd548e45c09c5d0df552f94134152de 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-foss-2015a-Python-2.7.9.eb @@ -4,7 +4,7 @@ version = '1.58.0' homepage = 'http://www.boost.org/' description = """Boost provides free peer-reviewed portable C++ source libraries.""" -toolchain = {'name': 'foss', 'version': '2015a'} +toolchain = {'name': 'foss', 'version': '2015a'} toolchainopts = {'pic': True, 'usempi': True} source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.58.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-intel-2015a-Python-2.7.9.eb index a209577bba563ea28b75df363e7dac921d12fe0d..9d905a95e3c1ef71a086fe14d4be2a2e1cbfc0e7 100644 --- a/easybuild/easyconfigs/b/Boost/Boost-1.58.0-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/b/Boost/Boost-1.58.0-intel-2015a-Python-2.7.9.eb @@ -4,7 +4,7 @@ version = '1.58.0' homepage = 'http://www.boost.org/' description = """Boost provides free peer-reviewed portable C++ source libraries.""" -toolchain = {'name': 'intel', 'version': '2015a'} +toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'pic': True, 'usempi': True} source_urls = [SOURCEFORGE_SOURCE] diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.59.0-foss-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/b/Boost/Boost-1.59.0-foss-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..5a890ee8ea508e935ba36a744a1bf35481c7870f --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.59.0-foss-2016a-Python-2.7.11.eb @@ -0,0 +1,25 @@ +name = 'Boost' +version = '1.59.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'foss', 'version': '2016a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +pythonversion = '2.7.11' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.59.0-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/b/Boost/Boost-1.59.0-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..57d1d20c886efce723840c595913e9f4fa4d889a --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.59.0-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,25 @@ +name = 'Boost' +version = '1.59.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +pythonversion = '2.7.11' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.59.0-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/b/Boost/Boost-1.59.0-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..df6d6d14c61619e1b5f8a23e6635e1f78101f189 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.59.0-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,25 @@ +name = 'Boost' +version = '1.59.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +pythonversion = '2.7.11' +versionsuffix = '-Python-%s' % pythonversion + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', pythonversion), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.60.0-foss-2015b.eb b/easybuild/easyconfigs/b/Boost/Boost-1.60.0-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..6319781076f5254aea6c6dd4989cc4b1b1469d39 --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.60.0-foss-2015b.eb @@ -0,0 +1,23 @@ +name = 'Boost' +version = '1.60.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'pic': True, 'usempi': True} + +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] +source_urls = [SOURCEFORGE_SOURCE] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), +] + +configopts = '--without-libraries=python' + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.60.0-foss-2016a.eb b/easybuild/easyconfigs/b/Boost/Boost-1.60.0-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..c50510711dba9e3d0833c53637a8cb56915a465e --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.60.0-foss-2016a.eb @@ -0,0 +1,23 @@ +name = 'Boost' +version = '1.60.0' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'foss', 'version': '2016a'} +toolchainopts = {'pic': True, 'usempi': True} + +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] +source_urls = [SOURCEFORGE_SOURCE] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), +] + +configopts = '--without-libraries=python' + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Boost/Boost-1.60.0-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/b/Boost/Boost-1.60.0-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..5a42251165e3c2c62dcf1d031fad3e12dd34d96e --- /dev/null +++ b/easybuild/easyconfigs/b/Boost/Boost-1.60.0-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,23 @@ +name = 'Boost' +version = '1.60.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.boost.org/' +description = """Boost provides free peer-reviewed portable C++ source libraries.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'pic': True, 'usempi': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%%(namelower)s_%s.tar.gz' % '_'.join(version.split('.'))] + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('Python', '2.7.11'), +] + +# also build boost_mpi +boost_mpi = True + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.1-goolf-1.4.10.eb index 0240ff0e2c2cedef6f93bbf1400c72e9a3b3152b..b0b3446182925dada704f802595e69b10886f4d4 100644 --- a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.1-goolf-1.4.10.eb @@ -1,6 +1,6 @@ -#Modified from existing version by: -#Robert Schmidt -#Ottawa Hospital Research Institute - Bioinformatics Team +# Modified from existing version by: +# Robert Schmidt +# Ottawa Hospital Research Institute - Bioinformatics Team name = 'Bowtie' version = '1.1.1' diff --git a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-foss-2015b.eb b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..b83380f7c8cd6433625ddeac2f495dba5752a382 --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-foss-2015b.eb @@ -0,0 +1,18 @@ +# Modified from existing version by: +# Robert Schmidt +# Ottawa Hospital Research Institute - Bioinformatics Team +name = 'Bowtie' +version = '1.1.2' + +homepage = 'http://bowtie-bio.sourceforge.net/index.shtml' +description = """Bowtie is an ultrafast, memory-efficient short read aligner. +It aligns short DNA sequences (reads) to the human genome. +""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'pic': True} + +sources = ['%(namelower)s-%(version)s-src.zip'] +source_urls = ['http://download.sourceforge.net/bowtie-bio/'] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-intel-2015a.eb b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-intel-2015a.eb index 88375672878455d1d993fbc1bb508f34e44ffcb5..6eb22c637f5bbc8f221e502bca75b63b768d1a64 100644 --- a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-intel-2015a.eb +++ b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-intel-2015a.eb @@ -1,6 +1,6 @@ -#Modified from existing version by: -#Robert Schmidt -#Ottawa Hospital Research Institute - Bioinformatics Team +# Modified from existing version by: +# Robert Schmidt +# Ottawa Hospital Research Institute - Bioinformatics Team name = 'Bowtie' version = '1.1.2' @@ -18,4 +18,3 @@ source_urls = ['http://download.sourceforge.net/bowtie-bio/'] patches = ['int64typedef.patch'] moduleclass = 'bio' - diff --git a/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-intel-2015b.eb b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..e8fb12a0cf2c076d16c57f93a2c5f50b9e73973e --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie/Bowtie-1.1.2-intel-2015b.eb @@ -0,0 +1,20 @@ +# Modified from existing version by: +# Robert Schmidt +# Ottawa Hospital Research Institute - Bioinformatics Team +name = 'Bowtie' +version = '1.1.2' + +homepage = 'http://bowtie-bio.sourceforge.net/index.shtml' +description = """Bowtie is an ultrafast, memory-efficient short read aligner. +It aligns short DNA sequences (reads) to the human genome. +""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = ['%(namelower)s-%(version)s-src.zip'] +source_urls = ['http://download.sourceforge.net/bowtie-bio/'] + +patches = ['int64typedef.patch'] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb index 89e89457faf3f5dae39a69318f38edc2ebd1ed05..99061a9473501539884d8728301524267c581d04 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goalf-1.1.0-no-OFED.eb @@ -21,8 +21,8 @@ description = """Bowtie 2 is an ultrafast and memory-efficient tool toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'optarch': True, 'pic': True} -sources = ['%s-%s-source.zip' % (name.lower(), version)] -source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%s/%s' % (name.lower(), version), 'download')] +sources = ['%(namelower)s-%(version)s-source.zip'] +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] # N.B. the download option above -> required for sourceforge moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb index e98e0de64efa08d6b0f372b87b72c6b72d7a12ce..13ddeb08e17c0524439586898d40447635704dd8 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-goolf-1.4.10.eb @@ -21,8 +21,8 @@ for aligning sequencing reads to long reference sequences.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True} -sources = ['%s-%s-source.zip' % (name.lower(), version)] -source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%s/%s' % (name.lower(), version), 'download')] +sources = ['%(namelower)s-%(version)s-source.zip'] +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] # N.B. the download option above -> required for sourceforge moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb index ffd1114704c6633461a5ef0905857764218940a7..15a2db61d2f30b9951ec62a56b6f73868b5eb438 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-4.0.6.eb @@ -21,8 +21,8 @@ description = """Bowtie 2 is an ultrafast and memory-efficient tool toolchain = {'name': 'ictce', 'version': '4.0.6'} toolchainopts = {'optarch': True, 'pic': True} -sources = ['%s-%s-source.zip' % (name.lower(), version)] -source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%s/%s' % (name.lower(), version), 'download')] +sources = ['%(namelower)s-%(version)s-source.zip'] +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] # N.B. the download option above -> required for sourceforge moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb index f08ff35329d3a290a51dcc2c930183b5d0b23fa4..7f8fbd5ca686bb401efd6678973aad32f8813a86 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.2-ictce-5.3.0.eb @@ -22,8 +22,8 @@ description = """Bowtie 2 is an ultrafast and memory-efficient tool toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'pic': True} -sources = ['%s-%s-source.zip' % (name.lower(), version)] -source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%s/%s' % (name.lower(), version), 'download')] +sources = ['%(namelower)s-%(version)s-source.zip'] +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] # N.B. the download option above -> required for sourceforge moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.5-goolf-1.4.10.eb index ae75b8cebd5cc31303f618a15ba84d9f2bd2ef5c..361932b89cf66fc3f5e5770f57e65e6cb6a55e1f 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.5-goolf-1.4.10.eb @@ -3,7 +3,7 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'Bowtie2' version = '2.0.5' @@ -17,12 +17,12 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin toolchain = {'name': 'goolf', 'version': '1.4.10'} -sources = ['%s-%s-source.zip' % (name.lower(), version)] +sources = ['%(namelower)s-%(version)s-source.zip'] source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] files_to_copy = [ (["bowtie2", "bowtie2-align", "bowtie2-build", "bowtie2-inspect"], 'bin'), - "doc", "example", "scripts",] + "doc", "example", "scripts"] sanity_check_paths = { 'files': ["bin/bowtie2-align", "bin/bowtie2-build", "bin/bowtie2-inspect"], diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.6-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.6-goolf-1.4.10.eb index 640a7f6d8391e83d33033b52ca7070a5d0fd7800..02e855be5b27e6d8f6313193ed50d9f4263c0ada 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.0.6-goolf-1.4.10.eb @@ -3,7 +3,7 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'Bowtie2' version = '2.0.6' @@ -17,7 +17,7 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin toolchain = {'name': 'goolf', 'version': '1.4.10'} -sources = ['%s-%s-source.zip' % (name.lower(), version)] +sources = ['%(namelower)s-%(version)s-source.zip'] source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] files_to_copy = [ diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-goolf-1.4.10.eb index 93890f908fea8e1b40e2018e9066201cc30e9d6e..2877853840d364494895198b049256e992708cba 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.1.0-goolf-1.4.10.eb @@ -3,7 +3,7 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'Bowtie2' version = '2.1.0' @@ -17,12 +17,12 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin toolchain = {'name': 'goolf', 'version': '1.4.10'} -sources = ['%s-%s-source.zip' % (name.lower(), version)] +sources = ['%(namelower)s-%(version)s-source.zip'] source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] files_to_copy = [ (["bowtie2", "bowtie2-align", "bowtie2-build", "bowtie2-inspect"], 'bin'), - "doc", "example","scripts"] + "doc", "example", "scripts"] sanity_check_paths = { 'files': ["bin/bowtie2-align", "bin/bowtie2-build", "bin/bowtie2-inspect"], diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.0-goolf-1.4.10.eb index 6dbb873164f05a32c1a0d1efb909e62d46184b7d..58e8cf38d8d26c879d9eb9cfda92c19341882cd5 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.0-goolf-1.4.10.eb @@ -3,7 +3,7 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'Bowtie2' version = '2.2.0' @@ -17,12 +17,12 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin toolchain = {'name': 'goolf', 'version': '1.4.10'} -sources = ['%s-%s-source.zip' % (name.lower(), version)] +sources = ['%(namelower)s-%(version)s-source.zip'] source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] files_to_copy = [ (["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", - "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), + "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "doc", "example", "scripts"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.2-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.2-goolf-1.4.10.eb index 83794c9d53ecc8da483acb8edaa2f557e3e28744..da1514917367898ad7f3ac7885c7419eedb5796d 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.2-goolf-1.4.10.eb @@ -3,7 +3,7 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'Bowtie2' version = '2.2.2' @@ -17,12 +17,12 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin toolchain = {'name': 'goolf', 'version': '1.4.10'} -sources = ['%s-%s-source.zip' % (name.lower(), version)] +sources = ['%(namelower)s-%(version)s-source.zip'] source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] files_to_copy = [ (["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", - "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), + "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb index 1a8d964de17d123d60c7f7124c483fdf31cde9f8..d2d24de2f8d4b4eac0c411832f82a7a4fc368771 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb @@ -24,7 +24,7 @@ source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/ files_to_copy = [ (["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", - "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), + "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-goolf-1.7.20.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-goolf-1.7.20.eb index 30dfc1896056ea87807b8d7ae8625639c77340b0..3f05bda0e89e6fb5679cc28b22bd04e9bd1bd02a 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-goolf-1.7.20.eb @@ -24,7 +24,7 @@ source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/ files_to_copy = [ (["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", - "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), + "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-intel-2015a.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-intel-2015a.eb index cc4bd53b3af195625813f229498639fa5e1f0202..d7856c8fa20670e694139de19c6d38b48ba02455 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-intel-2015a.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.5-intel-2015a.eb @@ -24,7 +24,7 @@ source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/ files_to_copy = [ (["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", - "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), + "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-foss-2015b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-foss-2015b.eb index 9b9219de67df50b72cb816860f5955cb8b4ede4e..a342fa3e4d18f5e43bb9baa634c6638afe1202b5 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-foss-2015b.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-foss-2015b.eb @@ -24,7 +24,7 @@ source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/ files_to_copy = [ (["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", - "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), + "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-intel-2015b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-intel-2015b.eb index 7fc6a11c7dd708d148b548edbc45f93374b37f56..3901df0ef725f4b10f4f9f78320d6d60dc52194d 100644 --- a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-intel-2015b.eb +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.6-intel-2015b.eb @@ -24,7 +24,7 @@ source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/ files_to_copy = [ (["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", - "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), + "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] sanity_check_paths = { diff --git a/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.7-foss-2015b.eb b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.7-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..f74362241fd85404a2e6f5cccb0b4f4d2a13a5f2 --- /dev/null +++ b/easybuild/easyconfigs/b/Bowtie2/Bowtie2-2.2.7-foss-2015b.eb @@ -0,0 +1,40 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# Modified by: Robert Schmidt +# Ottawa Hospital Research Institute - Bioinformatics Team +# Modified by: Adam Huffman +# The Francis Crick Institute + +easyblock = 'MakeCp' + +name = 'Bowtie2' +version = '2.2.7' + +homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml' +description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads + to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s + of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. + Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, + its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +sources = ['%(namelower)s-%(version)s-source.zip'] +source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] + +files_to_copy = [ + (["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", + "bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), + "doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] + +sanity_check_paths = { + 'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"], + 'dirs': [], +} + +# to add script folder to path just uncomment this line +#modextrapaths = {'PATH': 'scripts'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/b/basemap/basemap-1.0.7-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/b/basemap/basemap-1.0.7-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..9b8b2b064c69859b9fa5761e29fbb7ef444194d2 --- /dev/null +++ b/easybuild/easyconfigs/b/basemap/basemap-1.0.7-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,36 @@ +easyblock = 'PythonPackage' + +name = 'basemap' +version = '1.0.7' + +homepage = 'http://matplotlib.org/basemap/' +description = """The matplotlib basemap toolkit is a library for plotting 2D data on maps in Python""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['https://downloads.sourceforge.net/project/matplotlib/matplotlib-toolkits/basemap-%(version)s'] + +prebuildopts = 'GEOS_DIR=$EBROOTGEOS' +preinstallopts = prebuildopts + +python = 'Python' +pythonver = '2.7.10' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-Python-%s' % pythonver + +dependencies = [ + ('Python', pythonver), + ('matplotlib', '1.5.0', versionsuffix), + ('GEOS', '3.5.0', versionsuffix), + ('PIL', '1.1.7', versionsuffix), +] + +sanity_check_paths = { + 'files': ['lib/python%s/site-packages/_geoslib.%s' % (pythonshortver, SHLIB_EXT)], + 'dirs': ['lib/python%s/site-packages/mpl_toolkits/basemap' % pythonshortver] +} + +options = {'modulename': 'mpl_toolkits.basemap'} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb index 523b1ad59c890fc436fdc2dd4f8354ffc1f94b1e..e14fa5b01a995808fb06ca06aa909ad5031b968f 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goalf-1.1.0-no-OFED.eb @@ -32,8 +32,8 @@ start_dir = 'bbftpc' buildopts = "CC=$CC" sanity_check_paths = { - 'files': ['bin/bbftp'], - 'dirs': [] - } + 'files': ['bin/bbftp'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb index b3183258a9f80295b1c957ce8efcd3a5ca831c46..b334202a6e96232b6dfe91338ae915a5ba0b6f89 100644 --- a/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bbFTP/bbFTP-3.2.0-goolf-1.4.10.eb @@ -32,8 +32,8 @@ start_dir = 'bbftpc' buildopts = "CC=$CC" sanity_check_paths = { - 'files': ['bin/bbftp'], - 'dirs': [] - } + 'files': ['bin/bbftp'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb b/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb index 81abdbbdb7a70590486c2ce06adedfb3725f5658..17f6d6b14b75f8bf83b8e758f071c5f6cdf7c2c4 100644 --- a/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb +++ b/easybuild/easyconfigs/b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb @@ -35,4 +35,3 @@ sanity_check_paths = { } moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb index 7f34d18683617837c091b6d408b5281834af734d..eae65e841feebf52f18713680922db8fda1b02fe 100644 --- a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goalf-1.1.0-no-OFED.eb @@ -24,13 +24,13 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sources = [SOURCE_TAR_BZ2] source_urls = ['http://bbftppro.myftp.org/'] -unpack_options = '--strip-components=1' # we need to dive one level deep inside the tarball +unpack_options = '--strip-components=1' # we need to dive one level deep inside the tarball start_dir = 'bbftpc' sanity_check_paths = { - 'files': ['bin/bbftp'], - 'dirs': [] - } + 'files': ['bin/bbftp'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb index 8017f38954ab778889f1c51e5c63a25378024af0..29c92454a67925ec51a70d260a2a45927080c2fd 100644 --- a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-goolf-1.4.10.eb @@ -24,13 +24,13 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} sources = [SOURCE_TAR_BZ2] source_urls = ['http://bbftppro.myftp.org/'] -unpack_options = '--strip-components=1' # we need to dive one level deep inside the tarball +unpack_options = '--strip-components=1' # we need to dive one level deep inside the tarball start_dir = 'bbftpc' sanity_check_paths = { - 'files': ['bin/bbftp'], - 'dirs': [] - } + 'files': ['bin/bbftp'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-ictce-5.3.0.eb b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-ictce-5.3.0.eb index cf3d332d4be4367799827e87cd4fc5b552c203dc..21a811ccbf3b82bc5d5d44f00bf11e082897a54c 100644 --- a/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/bbftpPRO/bbftpPRO-9.3.1-ictce-5.3.0.eb @@ -24,7 +24,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} sources = [SOURCE_TAR_BZ2] source_urls = ['http://bbftppro.myftp.org/'] -unpack_options = '--strip-components=1' # we need to dive one level deep inside the tarball +unpack_options = '--strip-components=1' # we need to dive one level deep inside the tarball start_dir = 'bbftpc' diff --git a/easybuild/easyconfigs/b/bc/bc-1.06.95-GCC-4.8.2.eb b/easybuild/easyconfigs/b/bc/bc-1.06.95-GCC-4.8.2.eb index 1d80e71daeeb30231fadbcdd9164da0eeed98815..3755390098030c7018e2ecf4abaecb193d0d859c 100644 --- a/easybuild/easyconfigs/b/bc/bc-1.06.95-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/b/bc/bc-1.06.95-GCC-4.8.2.eb @@ -17,12 +17,12 @@ sources = [SOURCELOWER_TAR_BZ2] toolchain = {'name': 'GCC', 'version': '4.8.2'} dependencies = [ - ('libreadline','6.3'), - ('flex','2.5.38'), - ('Bison','3.0.2'), + ('libreadline', '6.3'), + ('flex', '2.5.38'), + ('Bison', '3.0.2'), ] builddependencies = [ - ('texinfo','5.2'), + ('texinfo', '5.2'), ] configopts = ['--with-readline'] diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goalf-1.1.0-no-OFED.eb index 8cc9ec017ec78c1bef9a859ec5ca8b03896d3a65..0165eeb65336ce9d9088b01468450bebfcf1fabb 100644 --- a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goalf-1.1.0-no-OFED.eb @@ -26,8 +26,8 @@ sanity_check_paths = { 'files': ["include/libhmsbeagle-1/libhmsbeagle/%s" % includefile for includefile in ["beagle.h", "platform.h"]] + ["lib/libhmsbeagle%s.so" % libfile - for libfile in ["-cpu", "-cpu-sse", "-jni" ,""]], - 'dirs' : [] + for libfile in ["-cpu", "-cpu-sse", "-jni", ""]], + 'dirs': [] } moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goolf-1.4.10.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goolf-1.4.10.eb index 6ce8bc4c642722e89ff8fcdbb5f2d073d21f9b1b..f54d71284a0c2819be918438a6c9390388fe7dba 100644 --- a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-goolf-1.4.10.eb @@ -27,8 +27,8 @@ sanity_check_paths = { 'files': ["include/libhmsbeagle-1/libhmsbeagle/%s" % includefile for includefile in ["beagle.h", "platform.h"]] + ["lib/libhmsbeagle%s.so" % libfile - for libfile in ["-cpu", "-cpu-sse", "-jni" ,""]], - 'dirs' : [] + for libfile in ["-cpu", "-cpu-sse", "-jni", ""]], + 'dirs': [] } moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-4.0.6.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-4.0.6.eb index 1a9b8e86f18277dd2ae2a7e88b4b3b6ca01b6b38..55504df755bc1f00c058ae1a90fbdaaf6ec9b92a 100644 --- a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-4.0.6.eb @@ -23,8 +23,8 @@ sanity_check_paths = { 'files': ["include/libhmsbeagle-1/libhmsbeagle/%s" % includefile for includefile in ["beagle.h", "platform.h"]] + ["lib/libhmsbeagle%s.so" % libfile - for libfile in ["-cpu", "-cpu-sse", "-jni" ,""]], - 'dirs' : [] + for libfile in ["-cpu", "-cpu-sse", "-jni", ""]], + 'dirs': [] } moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-5.3.0.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-5.3.0.eb index 971aefa649680e1c68953d04ff39c24c8c751b04..d4fc0c8fee561bf2c77355aa43b26c92242d14a8 100644 --- a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20120124-ictce-5.3.0.eb @@ -23,8 +23,8 @@ sanity_check_paths = { 'files': ["include/libhmsbeagle-1/libhmsbeagle/%s" % includefile for includefile in ["beagle.h", "platform.h"]] + ["lib/libhmsbeagle%s.so" % libfile - for libfile in ["-cpu", "-cpu-sse", "-jni" ,""]], - 'dirs' : [] + for libfile in ["-cpu", "-cpu-sse", "-jni", ""]], + 'dirs': [] } moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20141202-intel-2015a.eb b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20141202-intel-2015a.eb index 6958ac722420b20782fd3291599c15934ff01969..cc7febf444602efa1700606a61d32d29d50923b5 100644 --- a/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20141202-intel-2015a.eb +++ b/easybuild/easyconfigs/b/beagle-lib/beagle-lib-20141202-intel-2015a.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'beagle-lib' -#revision r1261 +# revision r1261 version = '20141202' homepage = 'http://code.google.com/p/beagle-lib/' @@ -29,8 +29,8 @@ sanity_check_paths = { 'files': ["include/libhmsbeagle-1/libhmsbeagle/%s" % includefile for includefile in ["beagle.h", "platform.h"]] + ["lib/libhmsbeagle%s.so" % libfile - for libfile in ["-cpu", "-cpu-sse", "-jni" ,""]], - 'dirs' : [] + for libfile in ["-cpu", "-cpu-sse", "-jni", ""]], + 'dirs': [] } moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb index 09be4e251381a1486680b49c6af7103786803631..bfc339020fbd2b5f416984daa12cbb53c402e10f 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goalf-1.1.0-no-OFED.eb @@ -28,9 +28,9 @@ source_urls = [GNU_SOURCE] configopts = '--with-sysroot=/' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', - 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip'] sanity_check_paths = { - 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a', 'lib64/libiberty.a'] + + 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a', 'lib64/libiberty.a'] + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], 'dirs': [], } diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb index 037eea64d670577145cd3de25899bcc26f5d0e82..437f04c2a6fc8e9622950e760f51e26a99b1a307 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-gompi-1.4.12-no-OFED.eb @@ -28,9 +28,9 @@ source_urls = [GNU_SOURCE] configopts = '--with-sysroot=/' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', - 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip'] sanity_check_paths = { - 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a', 'lib64/libiberty.a'] + + 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a', 'lib64/libiberty.a'] + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], 'dirs': [], } diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb index 6eefeecf7f105efe2cf079ce217cbdcca6cd9866..5f76d89a06764d873b39e83f81320f12e7e8f66c 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.4.10.eb @@ -27,9 +27,9 @@ source_urls = [GNU_SOURCE] configopts = '--with-sysroot=/' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', - 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip'] sanity_check_paths = { - 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a', 'lib64/libiberty.a'] + + 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a', 'lib64/libiberty.a'] + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], 'dirs': [], } diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.5.14.eb b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.5.14.eb index 1922cb5d1278e46e29a3390b39777eff79f9b58f..5dae8ebe27dc03e4c75dc3c7bdc380e8e2823f76 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.22-goolf-1.5.14.eb @@ -25,9 +25,9 @@ sources = ['binutils-%(version)s.tar.bz2'] source_urls = [GNU_SOURCE] binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', - 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip'] sanity_check_paths = { - 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a', 'lib64/libiberty.a'] + + 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a', 'lib64/libiberty.a'] + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], 'dirs': [], } diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb b/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb index f289f62f1b1330c3bf3ce51084f8544a58850083..3d49fdcf03a6d201b6de0aaad2b6fb363160402d 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.24-foss-2014b.eb @@ -19,7 +19,7 @@ dependencies = [ configopts = '--with-sysroot=/' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', - 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip'] sanity_check_paths = { 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a'] + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb b/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb index 90ee55811f8d090738cd56b78eb71cd0f1a755b3..77fb03962bf0ff81f50096e33d3cc63e99def20f 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.24-intel-2014b.eb @@ -22,7 +22,7 @@ configopts = '--with-sysroot=/' buildopts = 'CFLAGS="$CFLAGS -wd175"' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'nm', - 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip'] sanity_check_paths = { 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a'] + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb index 9ceff3cb2cf36ea08aaf319e494969e9f8a0231b..608c44a15521cde30eec5ba9c49943893f9c0e17 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2-binutils-2.25.eb @@ -29,7 +29,7 @@ prebuildopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' configopts = '--with-sysroot=/ --enable-gold --enable-ld=default --enable-plugins --enable-shared --enable-static' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'ld.gold', 'nm', - 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip'] sanity_check_paths = { 'files': ['bin/%s' % x for x in binlist] + diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb index f62c14d803dd17792a7d85cb3cce0740af414637..17ecd5c19008a011fb0180ea8bc6f8c4d342ab97 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.2.eb @@ -28,7 +28,7 @@ prebuildopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' configopts = '--with-sysroot=/ --enable-gold --enable-ld=default --enable-plugins --enable-shared --enable-static' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'ld.gold', 'nm', - 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip'] sanity_check_paths = { 'files': ['bin/%s' % x for x in binlist] + diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.3-binutils-2.25.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.3-binutils-2.25.eb index 6d5e96c3f745fc1ae2788efd4f1db3f6bb179e89..61254037e0396e5d63659b3e4c854e5aacb3403e 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.3-binutils-2.25.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.3-binutils-2.25.eb @@ -29,7 +29,7 @@ prebuildopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' configopts = '--with-sysroot=/ --enable-gold --enable-ld=default --enable-plugins --enable-shared --enable-static' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'ld.gold', 'nm', - 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip'] sanity_check_paths = { 'files': ['bin/%s' % x for x in binlist] + diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.3.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.3.eb index 36bd18b1aeef6d8aa545148451b7e15dd3c2e6cc..0007322f1fb51af25c3045f33ec9ce537e831076 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.3.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-4.9.3.eb @@ -28,7 +28,7 @@ prebuildopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' configopts = '--with-sysroot=/ --enable-gold --enable-ld=default --enable-plugins --enable-shared --enable-static' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'ld.gold', 'nm', - 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip'] sanity_check_paths = { 'files': ['bin/%s' % x for x in binlist] + diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-5.1.0-binutils-2.25.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-5.1.0-binutils-2.25.eb index e24f90d2ed20a9fc04f8c6e8458a4c0263091a1e..e6f5a84c78781fe6e551cdee1befa1c521116c05 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-5.1.0-binutils-2.25.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCC-5.1.0-binutils-2.25.eb @@ -29,7 +29,7 @@ prebuildopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' configopts = '--with-sysroot=/ --enable-gold --enable-ld=default --enable-plugins --enable-shared --enable-static' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'ld.gold', 'nm', - 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip'] sanity_check_paths = { 'files': ['bin/%s' % x for x in binlist] + diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCCcore-4.9.3.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCCcore-4.9.3.eb index 77644355ad6b3b9bf06d4cc09f112b649167c1d5..5fcc8fc6b3b23886cbde2b48fc3bfb7a3b31c3fa 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25-GCCcore-4.9.3.eb @@ -29,7 +29,7 @@ prebuildopts = 'LIBS="$EBROOTZLIB/lib/libz.a"' configopts = '--with-sysroot=/ --enable-gold --enable-ld=default --enable-plugins --enable-shared --enable-static' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'ld.gold', 'nm', - 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip'] sanity_check_paths = { 'files': ['bin/%s' % x for x in binlist] + diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25.1.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..b6d188a41b1513a8888fb8e9b020022b67894154 --- /dev/null +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25.1.eb @@ -0,0 +1,39 @@ +easyblock = 'ConfigureMake' + +name = 'binutils' +version = '2.25.1' + +homepage = 'http://directory.fsf.org/project/binutils/' +description = "binutils: GNU binary utilities" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.4'), + # zlib required, but being linked instatically, so not a runtime dep + ('zlib', '1.2.8'), +] + +# statically link with zlib, to avoid runtime dependency on zlib +# further, add the system library path in the rpath: this should 'harden' the +# resulting binutils to bootstrap GCC (no trouble when other libstdc++ is build etc) +preconfigopts = 'LIBS="$EBROOTZLIB/lib/libz.a -Wl,-rpath=/lib64 -Wl,-rpath=/usr/lib64 -Wl,-rpath=/lib -Wl,-rpath=/usr/lib"' +prebuildopts = preconfigopts + +# make sure that system libraries are also considered by ld and ld.gold is also built +# --enable-plugins should be used whenever --enable-gold is used, see http://llvm.org/docs/GoldPlugin.html +configopts = '--with-sysroot=/ --enable-gold --enable-ld=default --enable-plugins' + +binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'ld.gold', 'nm', + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip'] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a'] + + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/binutils/binutils-2.25.eb b/easybuild/easyconfigs/b/binutils/binutils-2.25.eb index 12add4fe48ddedd70aeba43ad1227d44fe0e33c2..3a95cee4b62c2bf044d66a8974170ed3d5213ea0 100644 --- a/easybuild/easyconfigs/b/binutils/binutils-2.25.eb +++ b/easybuild/easyconfigs/b/binutils/binutils-2.25.eb @@ -29,7 +29,7 @@ prebuildopts = preconfigopts configopts = '--with-sysroot=/ --enable-gold --enable-ld=default --enable-plugins' binlist = ['addr2line', 'ar', 'as', 'c++filt', 'elfedit', 'gprof', 'ld', 'ld.bfd', 'ld.gold', 'nm', - 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip' ] + 'objcopy', 'objdump', 'ranlib', 'readelf', 'size', 'strings', 'strip'] sanity_check_paths = { 'files': ['bin/%s' % x for x in binlist] + ['lib/libbfd.a', 'lib/libopcodes.a'] + ['include/%s' % x for x in ['ansidecl.h', 'bfd.h', 'bfdlink.h', 'dis-asm.h', 'symcat.h']], diff --git a/easybuild/easyconfigs/b/byacc/byacc-20120526-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/b/byacc/byacc-20120526-goalf-1.1.0-no-OFED.eb index 42ae4e574e029307a140ffbae9ca690566478a09..17776b5889715157c07f957ad8d5034a0a0df4c7 100644 --- a/easybuild/easyconfigs/b/byacc/byacc-20120526-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/b/byacc/byacc-20120526-goalf-1.1.0-no-OFED.eb @@ -13,8 +13,8 @@ sources = [SOURCELOWER_TGZ] source_urls = ['ftp://invisible-island.net/byacc'] sanity_check_paths = { - 'files': ["bin/yacc"], - 'dirs': [] - } + 'files': ["bin/yacc"], + 'dirs': [] +} moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/byacc/byacc-20120526-goolf-1.4.10.eb b/easybuild/easyconfigs/b/byacc/byacc-20120526-goolf-1.4.10.eb index f53938591a3fffaa81bf039089e6b6206bcb7b02..9a479b92a1c733d537272072ba0cbe9084bdbebd 100644 --- a/easybuild/easyconfigs/b/byacc/byacc-20120526-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/b/byacc/byacc-20120526-goolf-1.4.10.eb @@ -13,8 +13,8 @@ sources = [SOURCELOWER_TGZ] source_urls = ['ftp://invisible-island.net/byacc'] sanity_check_paths = { - 'files': ["bin/yacc"], - 'dirs': [] - } + 'files': ["bin/yacc"], + 'dirs': [] +} moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-4.0.6.eb b/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-4.0.6.eb index b2e4ab6e2443e27bae4784d9329a0407d905ec61..5112bff567d49f121872dc77c5c424c18d2ff674 100644 --- a/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-4.0.6.eb @@ -7,14 +7,14 @@ homepage = 'http://invisible-island.net/byacc/byacc.html' description = """Berkeley Yacc (byacc) is generally conceded to be the best yacc variant available. In contrast to bison, it is written to avoid dependencies upon a particular compiler.""" -toolchain = {'name': 'ictce', 'version' : '4.0.6'} +toolchain = {'name': 'ictce', 'version': '4.0.6'} sources = [SOURCELOWER_TGZ] source_urls = ['ftp://invisible-island.net/byacc'] sanity_check_paths = { - 'files': ["bin/yacc"], - 'dirs': [] - } + 'files': ["bin/yacc"], + 'dirs': [] +} moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-5.3.0.eb b/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-5.3.0.eb index 39def10fe537b29379e113a14a85885aa2bb074a..2dcca844dd76272220274b909d56014c7e288eea 100644 --- a/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/b/byacc/byacc-20120526-ictce-5.3.0.eb @@ -14,8 +14,8 @@ sources = [SOURCELOWER_TGZ] source_urls = ['ftp://invisible-island.net/byacc'] sanity_check_paths = { - 'files': ["bin/yacc"], - 'dirs': [] - } + 'files': ["bin/yacc"], + 'dirs': [] +} moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/byacc/byacc-20150711-foss-2015b.eb b/easybuild/easyconfigs/b/byacc/byacc-20150711-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..6fabc38da754c3d9b904ec0fc41bf4ef83c9b059 --- /dev/null +++ b/easybuild/easyconfigs/b/byacc/byacc-20150711-foss-2015b.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'byacc' +version = '20150711' + +homepage = 'http://invisible-island.net/byacc/byacc.html' +description = """Berkeley Yacc (byacc) is generally conceded to be the best yacc variant available. + In contrast to bison, it is written to avoid dependencies upon a particular compiler.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +sources = [SOURCELOWER_TGZ] +source_urls = ['ftp://invisible-island.net/byacc'] + +checksums = ['2700401030583c4e9169ac7ea7d08de8'] + +sanity_check_paths = { + 'files': ["bin/yacc"], + 'dirs': [] +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/byacc/byacc-20150711-intel-2015b.eb b/easybuild/easyconfigs/b/byacc/byacc-20150711-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..1578ff69e4f7972f16a93369dcc3a5bbfce4ea63 --- /dev/null +++ b/easybuild/easyconfigs/b/byacc/byacc-20150711-intel-2015b.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'byacc' +version = '20150711' + +homepage = 'http://invisible-island.net/byacc/byacc.html' +description = """Berkeley Yacc (byacc) is generally conceded to be the best yacc variant available. + In contrast to bison, it is written to avoid dependencies upon a particular compiler.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCELOWER_TGZ] +source_urls = ['ftp://invisible-island.net/byacc'] + +checksums = ['2700401030583c4e9169ac7ea7d08de8'] + +sanity_check_paths = { + 'files': ["bin/yacc"], + 'dirs': [] +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-2015.06-XC.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-2015.06-XC.eb new file mode 100644 index 0000000000000000000000000000000000000000..5b74aeb4ae2d557bb178051891e9aa903ccf0aff --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-2015.06-XC.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-2015.11-XC.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-2015.11-XC.eb new file mode 100644 index 0000000000000000000000000000000000000000..5666a2e9f5905e0d1cb60e954dad508ab0c47f5b --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-2015.11-XC.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCC-4.9.3-2.25.eb similarity index 90% rename from easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.25.eb rename to easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCC-4.9.3-2.25.eb index 3f96190606801772d44e63e8329012fe5cb9b6e8..b21a0542ef20509266aa01f923395cdfe15546d0 100644 --- a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-GCC-4.9.3-2.25.eb @@ -6,7 +6,7 @@ description = """bzip2 is a freely available, patent free, high-quality data com compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} toolchainopts = {'pic': True} sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2016a.eb similarity index 90% rename from easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.40.eb rename to easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2016a.eb index 58489cb68f9841a4501baa314d7f4c6f6c750ec1..4620787ebb9a4a6ab25fb838190cac7a6c8d6e74 100644 --- a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.2.40.eb +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-foss-2016a.eb @@ -6,7 +6,7 @@ description = """bzip2 is a freely available, patent free, high-quality data com compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchain = {'name': 'foss', 'version': '2016a'} toolchainopts = {'pic': True} sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-ictce-5.4.0.eb similarity index 90% rename from easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.1.29.eb rename to easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-ictce-5.4.0.eb index a04591dedea2dabab6fa0f929e716be159d27f68..705ab72be8f5762c64884a5a6a08f62fd8be9233 100644 --- a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-ictce-5.4.0.eb @@ -6,7 +6,8 @@ description = """bzip2 is a freely available, patent free, high-quality data com compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.""" -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} + +toolchain = {'name': 'ictce', 'version': '5.4.0'} toolchainopts = {'pic': True} sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-intel-2016a.eb b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..c663462b9f2fbe994ab19ac919d8e338ddae223e --- /dev/null +++ b/easybuild/easyconfigs/b/bzip2/bzip2-1.0.6-intel-2016a.eb @@ -0,0 +1,15 @@ +name = 'bzip2' +version = '1.0.6' + +homepage = 'http://www.bzip.org/' +description = """bzip2 is a freely available, patent free, high-quality data compressor. It typically + compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression and six times faster at decompression.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'pic': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://www.bzip.org/%(version)s'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86.eb b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86.eb index 0c1d5284b7d1f404efa4a56f504997b58f1e4a2f..98b5be9cc78104fcdcdca7b768973005f38233f5 100644 --- a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86.eb +++ b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86.eb @@ -19,7 +19,7 @@ sources = ['cap3.linux.tar'] checksums = [('md5', '55f57f61e588d4de06c0506cf2696c29')] sanity_check_paths = { - 'files': ['cap3','formcon'], + 'files': ['cap3', 'formcon'], 'dirs': [], } diff --git a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86_64.eb b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86_64.eb index 0962339a29006078cbdb5f8d49324496a3e56d4f..a459a2b2ae817c1829419c3efd282589efc658e0 100644 --- a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86_64.eb +++ b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-intel-x86_64.eb @@ -19,7 +19,7 @@ sources = ['cap3.linux.x86_64.tar'] checksums = [('md5', '0fbb95c3fcbfb2b1afcebc5f7e2b4343')] sanity_check_paths = { - 'files': ['cap3','formcon'], + 'files': ['cap3', 'formcon'], 'dirs': [], } diff --git a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-opteron.eb b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-opteron.eb index 3e19f30c4910fbe108d6d3e94b39f65eea4e41f9..574d59a93d86de55fe22ee843905e6cbee0bf4c7 100644 --- a/easybuild/easyconfigs/c/CAP3/CAP3-20071221-opteron.eb +++ b/easybuild/easyconfigs/c/CAP3/CAP3-20071221-opteron.eb @@ -19,7 +19,7 @@ sources = ['cap3.linux.opteron64.tar'] checksums = [('md5', '2d924766f6e8b5cf03bd2db81016d821')] sanity_check_paths = { - 'files': ['cap3','formcon'], + 'files': ['cap3', 'formcon'], 'dirs': [], } diff --git a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-goolf-1.4.10.eb index d575fbe8958d94bb0deeaf2c2e962dbb64e609d7..587da5f4ecd109a7eeec26e1b069f37ee6582c25 100644 --- a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-goolf-1.4.10.eb @@ -13,7 +13,7 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = ['http://heasarc.gsfc.nasa.gov/fitsio/CCfits/'] sources = [SOURCE_TAR_GZ] -dependencies = [('CFITSIO','3.34')] +dependencies = [('CFITSIO', '3.34')] sanity_check_paths = { 'files': ['bin/cookbook', 'lib/libCCfits.%s' % SHLIB_EXT, 'lib/pkgconfig/CCfits.pc'], diff --git a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-4.1.13.eb b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-4.1.13.eb index 3375f207b28fe58286e1db89d358790e097b4fcb..1c12c8c026c06068a3986099c7fb7329c29fe6a6 100644 --- a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-4.1.13.eb @@ -13,7 +13,7 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = ['http://heasarc.gsfc.nasa.gov/fitsio/CCfits/'] sources = [SOURCE_TAR_GZ] -dependencies = [('CFITSIO','3.34')] +dependencies = [('CFITSIO', '3.34')] sanity_check_paths = { 'files': ['bin/cookbook', 'lib/libCCfits.%s' % SHLIB_EXT, 'lib/pkgconfig/CCfits.pc'], diff --git a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-5.3.0.eb index a344cd2ac08de17022f790c32cce505fbcae9b67..15a5ec31e9759a3c84ad754a5b6d445a54dd51e3 100644 --- a/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CCfits/CCfits-2.4-ictce-5.3.0.eb @@ -13,7 +13,7 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = ['http://heasarc.gsfc.nasa.gov/fitsio/CCfits/'] sources = [SOURCE_TAR_GZ] -dependencies = [('CFITSIO','3.34')] +dependencies = [('CFITSIO', '3.34')] sanity_check_paths = { 'files': ['bin/cookbook', 'lib/libCCfits.%s' % SHLIB_EXT, 'lib/pkgconfig/CCfits.pc'], diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.5.4-ictce-5.3.0-2011-03-07.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.5.4-ictce-5.3.0-2011-03-07.eb index 5c78fcfbe54f45c0514ab1f6b99dde2293080bc7..e4650118de675db9f57e90048e7625a2119ef569 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.5.4-ictce-5.3.0-2011-03-07.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.5.4-ictce-5.3.0-2011-03-07.eb @@ -11,7 +11,7 @@ easyblock = "MakeCp" name = 'CD-HIT' version = '4.5.4' -versionsuffix='-2011-03-07' +versionsuffix = '-2011-03-07' homepage = 'http://www.bioinformatics.org/cd-hit/' description = """CD-HIT stands for Cluster Database at High Identity with Tolerance. The program diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-foss-2015b-2012-08-27.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-foss-2015b-2012-08-27.eb new file mode 100644 index 0000000000000000000000000000000000000000..2fdb2ffa3dd765a3b7e3049c29125cb8a213445e --- /dev/null +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-foss-2015b-2012-08-27.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = "CD-HIT" +version = "4.6.1" +versionsuffix = "-2012-08-27" + +homepage = 'http://weizhong-lab.ucsd.edu/cd-hit/' +description = """ CD-HIT is a very widely used program for clustering and + comparing protein or nucleotide sequences.""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'openmp': True} + +source_urls = ['https://github.com/weizhongli/cdhit/releases/download/V%(version)s/'] +sources = ['%(namelower)s-v%(version)s%(versionsuffix)s.tgz'] + +# make sure compilation flags are passed down (e.g. to enable OpenMP) +buildopts = ' CC="$CXX" CCFLAGS="$CPPFLAGS $CXXFLAGS"' + +# put here the list of generated executables when compiling +list_of_executables = ["cd-hit", "cd-hit-est", "cd-hit-2d", "cd-hit-est-2d", "cd-hit-div", "cd-hit-454"] + +# this is the real EasyBuild line to copy all the executables and perl scripts to "bin" +files_to_copy = [(list_of_executables, "bin"), (["*.pl"], 'bin'), "README", "doc", "license.txt"] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in list_of_executables], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-goolf-1.4.10-2012-08-27.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-goolf-1.4.10-2012-08-27.eb index f2058ca8b6c1abbfb552e771f05d5b94508769ec..c3e01a8650558ef7e96a5aa408471491e93a6d08 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-goolf-1.4.10-2012-08-27.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-goolf-1.4.10-2012-08-27.eb @@ -26,7 +26,7 @@ buildopts = ' CC="$CXX" CCFLAGS="$CPPFLAGS $CXXFLAGS"' list_of_executables = ["cd-hit", "cd-hit-est", "cd-hit-2d", "cd-hit-est-2d", "cd-hit-div", "cd-hit-454"] # this is the real EasyBuild line to copy all the executables and perl scripts to "bin" -files_to_copy = [(list_of_executables, "bin"), (["*.pl"], 'bin'), "README", "doc", "license.txt" ] +files_to_copy = [(list_of_executables, "bin"), (["*.pl"], 'bin'), "README", "doc", "license.txt"] sanity_check_paths = { 'files': ["bin/%s" % x for x in list_of_executables], diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-ictce-5.5.0-2012-08-27.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-ictce-5.5.0-2012-08-27.eb index 83b5369b717740170ea409eb5aa81bf359a353a8..5563d4c561422f70dd3711659e9552d51d59f8ed 100644 --- a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-ictce-5.5.0-2012-08-27.eb +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.1-ictce-5.5.0-2012-08-27.eb @@ -26,7 +26,7 @@ buildopts = ' CC="$CXX" CCFLAGS="$CPPFLAGS $CXXFLAGS"' list_of_executables = ["cd-hit", "cd-hit-est", "cd-hit-2d", "cd-hit-est-2d", "cd-hit-div", "cd-hit-454"] # this is the real EasyBuild line to copy all the executables and perl scripts to "bin" -files_to_copy = [(list_of_executables, "bin"), (["*.pl"], 'bin'), "README", "doc", "license.txt" ] +files_to_copy = [(list_of_executables, "bin"), (["*.pl"], 'bin'), "README", "doc", "license.txt"] sanity_check_paths = { 'files': ["bin/%s" % x for x in list_of_executables], diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-GNU-4.9.3-2.25-2015-0603.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-GNU-4.9.3-2.25-2015-0603.eb new file mode 100644 index 0000000000000000000000000000000000000000..268e5321921fd0de713f902f02510d7f97fa57f1 --- /dev/null +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-GNU-4.9.3-2.25-2015-0603.eb @@ -0,0 +1,45 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = "CD-HIT" +version = "4.6.4" +versionsuffix = "-2015-0603" + +homepage = 'http://weizhongli-lab.org/cd-hit/' + +description = """ CD-HIT is a very widely used program for clustering and + comparing protein or nucleotide sequences.""" + +toolchain = {'name': 'GNU', 'version': '4.9.3-2.25'} +toolchainopts = {'openmp': True} + +source_urls = ['https://github.com/weizhongli/cdhit/releases/download/V%(version)s/'] +sources = ['%(namelower)s-v%(version)s%(versionsuffix)s.tar.gz'] + +# make sure compilation flags are passed down (e.g. to enable OpenMP) +buildopts = ' CC="$CXX" CCFLAGS="$CPPFLAGS $CXXFLAGS"' + +# put here the list of generated executables when compiling +list_of_executables = ["cd-hit", "cd-hit-est", "cd-hit-2d", "cd-hit-est-2d", "cd-hit-div", "cd-hit-454"] + +# this is the real EasyBuild line to copy all the executables and perl scripts to "bin" +files_to_copy = [ + (list_of_executables, "bin"), + (["*.pl"], 'bin'), + (["psi-cd-hit/*.pl"], 'bin'), + "README", + "doc", + "license.txt", + "psi-cd-hit/README.psi-cd-hit", +] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in list_of_executables], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-foss-2015b-2015-0603.eb b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-foss-2015b-2015-0603.eb new file mode 100644 index 0000000000000000000000000000000000000000..832db33507641bc6a63a00d3e30db8b7d9297c97 --- /dev/null +++ b/easybuild/easyconfigs/c/CD-HIT/CD-HIT-4.6.4-foss-2015b-2015-0603.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = "CD-HIT" +version = "4.6.4" +versionsuffix = "-2015-0603" + +homepage = 'http://weizhong-lab.ucsd.edu/cd-hit/' +description = """ CD-HIT is a very widely used program for clustering and + comparing protein or nucleotide sequences.""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'openmp': True} + +source_urls = ['https://github.com/weizhongli/cdhit/releases/download/V%(version)s/'] +sources = ['%(namelower)s-v%(version)s%(versionsuffix)s.tar.gz'] + +# make sure compilation flags are passed down (e.g. to enable OpenMP) +buildopts = ' CC="$CXX" CCFLAGS="$CPPFLAGS $CXXFLAGS"' + +# put here the list of generated executables when compiling +list_of_executables = ["cd-hit", "cd-hit-est", "cd-hit-2d", "cd-hit-est-2d", "cd-hit-div", "cd-hit-454"] + +# this is the real EasyBuild line to copy all the executables and perl scripts to "bin" +files_to_copy = [(list_of_executables, "bin"), (["*.pl"], 'bin'), "README", "doc", "license.txt"] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in list_of_executables], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-goolf-1.4.10.eb index 3373480b9bbe34c02a1eaf0e66ec6d568eb39f34..9a156bffea04a2263263911b14d5d9df343c7e7b 100644 --- a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-goolf-1.4.10.eb @@ -15,8 +15,8 @@ source_urls = ['ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/'] sources = ['%%(namelower)s%s.tar.gz' % srcversion] sanity_check_paths = { - 'files':["lib/libcfitsio.a"], - 'dirs':["include"], + 'files': ["lib/libcfitsio.a"], + 'dirs': ["include"], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-4.1.13.eb b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-4.1.13.eb index 7086648457b854c03f246587035bb64bf28ab602..0fc72a1115e164ba3b238daf3564a7676f758c52 100644 --- a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-4.1.13.eb @@ -15,8 +15,8 @@ source_urls = ['ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/'] sources = ['%%(namelower)s%s.tar.gz' % srcversion] sanity_check_paths = { - 'files':["lib/libcfitsio.a"], - 'dirs':["include"], + 'files': ["lib/libcfitsio.a"], + 'dirs': ["include"], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.3.0.eb b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.3.0.eb index bbd4471f375f21c0f5594a921cd9bda0f9a235ba..bf8fb571c8d7adb1e5e25fef20acd59d7cb94dde 100644 --- a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.34-ictce-5.3.0.eb @@ -15,8 +15,8 @@ source_urls = ['ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/'] sources = ['%%(namelower)s%s.tar.gz' % srcversion] sanity_check_paths = { - 'files':["lib/libcfitsio.a"], - 'dirs':["include"], + 'files': ["lib/libcfitsio.a"], + 'dirs': ["include"], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.37-intel-2015a.eb b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.37-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..08e0bf1795b3ead089f732d0ea3223d2c6e7dbfc --- /dev/null +++ b/easybuild/easyconfigs/c/CFITSIO/CFITSIO-3.37-intel-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'CFITSIO' +version = '3.37' + +homepage = 'http://heasarc.gsfc.nasa.gov/fitsio/' +description = """CFITSIO is a library of C and Fortran subroutines for reading and writing data files in +FITS (Flexible Image Transport System) data format.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True} + +srcversion = '%s0' % version.replace('.', '') +source_urls = ['ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/'] +sources = ['%%(namelower)s%s.tar.gz' % srcversion] + +sanity_check_paths = { + 'files': ["lib/libcfitsio.a"], + 'dirs': ["include"], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/c/CGAL/CGAL-4.0-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/c/CGAL/CGAL-4.0-ictce-4.0.6-Python-2.7.3.eb index 83a1ddddd0226152ebf04ebe302964beb365a9f4..09a71c9763fa441360e7ac60f9c19397c447af91 100644 --- a/easybuild/easyconfigs/c/CGAL/CGAL-4.0-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/c/CGAL/CGAL-4.0-ictce-4.0.6-Python-2.7.3.eb @@ -24,4 +24,3 @@ dependencies = [ ] moduleclass = 'numlib' - diff --git a/easybuild/easyconfigs/c/CGAL/CGAL-4.0-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/c/CGAL/CGAL-4.0-ictce-5.3.0-Python-2.7.3.eb index 1e713bc44abc194d868453fb0c3fef8e2c193def..c407409f323a2247b8094bcf2f2820c78b0958a0 100644 --- a/easybuild/easyconfigs/c/CGAL/CGAL-4.0-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/c/CGAL/CGAL-4.0-ictce-5.3.0-Python-2.7.3.eb @@ -25,4 +25,3 @@ dependencies = [ ] moduleclass = 'numlib' - diff --git a/easybuild/easyconfigs/c/CGAL/CGAL-4.6-intel-2015a-GLib-2.44.1-Python-2.7.10.eb b/easybuild/easyconfigs/c/CGAL/CGAL-4.6-intel-2015a-GLib-2.44.1-Python-2.7.10.eb index 9dca8053a4b5bbe2032c9744f126d1abc731d80a..566b71d5c5992601fcc064114ab98ae6c457c800 100644 --- a/easybuild/easyconfigs/c/CGAL/CGAL-4.6-intel-2015a-GLib-2.44.1-Python-2.7.10.eb +++ b/easybuild/easyconfigs/c/CGAL/CGAL-4.6-intel-2015a-GLib-2.44.1-Python-2.7.10.eb @@ -17,7 +17,7 @@ pysuff = '-Python-2.7.10' versionsuffix = '%s%s' % ('-GLib-2.44.1', pysuff) dependencies = [ - #GMP does not compile correctly with ICC on Haswell architecture using pre 2015b toolchain + # GMP does not compile correctly with ICC on Haswell architecture using pre 2015b toolchain ('GMP', '6.0.0a', '', ('GCC', '4.9.2')), ('Boost', '1.58.0', pysuff), ('MPFR', '3.1.2', '-GMP-6.0.0a'), diff --git a/easybuild/easyconfigs/c/CGAL/CGAL-4.6-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/c/CGAL/CGAL-4.6-intel-2015a-Python-2.7.10.eb index f6286f011cec11418faea3be568910adee6805d9..ff84775666e2f56d7e0854413923b760a0d90ce4 100644 --- a/easybuild/easyconfigs/c/CGAL/CGAL-4.6-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/c/CGAL/CGAL-4.6-intel-2015a-Python-2.7.10.eb @@ -17,7 +17,7 @@ pythonversion = '2.7.10' versionsuffix = "-Python-%s" % pythonversion dependencies = [ -#GMP does not compile correctly with ICC on Haswell architecture + # GMP does not compile correctly with ICC on Haswell architecture ('GMP', '6.0.0a', '', ('GCC', '4.9.2')), ('Boost', '1.58.0', versionsuffix), ('MPFR', '3.1.2', '-GMP-6.0.0a'), diff --git a/easybuild/easyconfigs/c/CGAL/CGAL-4.6-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/c/CGAL/CGAL-4.6-intel-2015a-Python-2.7.9.eb index b27b5edd11213a6cfcc2869135dd33a6a2999563..59646f1f0f5f2a7c85e8d14785e9d01df569eee0 100644 --- a/easybuild/easyconfigs/c/CGAL/CGAL-4.6-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/c/CGAL/CGAL-4.6-intel-2015a-Python-2.7.9.eb @@ -17,7 +17,7 @@ pythonversion = '2.7.9' versionsuffix = "-Python-%s" % pythonversion dependencies = [ -#GMP does not compile correctly with ICC on Haswell architecture + # GMP does not compile correctly with ICC on Haswell architecture ('GMP', '6.0.0a', '', ('GCC', '4.9.2')), ('Boost', '1.58.0', versionsuffix), ('MPFR', '3.1.2', '-GMP-6.0.0a'), diff --git a/easybuild/easyconfigs/c/CGAL/CGAL-4.6.3-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/c/CGAL/CGAL-4.6.3-intel-2015b-Python-2.7.10.eb index f4f6ee73bf4cded92e1d0c99ec84b17e3a7426d0..40ba6d07e7f49ac6ba5406ce69f0dc4f42945ee2 100644 --- a/easybuild/easyconfigs/c/CGAL/CGAL-4.6.3-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/c/CGAL/CGAL-4.6.3-intel-2015b-Python-2.7.10.eb @@ -24,7 +24,7 @@ dependencies = [ ] builddependencies = [ -#CGAL 4.6.3 does not build with CMake 3.3.2! + # CGAL 4.6.3 does not build with CMake 3.3.2! ('CMake', '3.2.3'), ] diff --git a/easybuild/easyconfigs/c/CGAL/CGAL-4.7-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/c/CGAL/CGAL-4.7-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..4cab94fb9f5a5c9489212a98ac5e8ea39da054ba --- /dev/null +++ b/easybuild/easyconfigs/c/CGAL/CGAL-4.7-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,36 @@ +name = 'CGAL' +version = '4.7' + +homepage = 'http://www.cgal.org/' +description = """The goal of the CGAL Open Source Project is to provide easy access to efficient + and reliable geometric algorithms in the form of a C++ library.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'strict': True} + +# note: source URL needs to be updated for a new version (checksums too)! +source_urls = ['https://github.com/CGAL/cgal/releases/download/releases%2FCGAL-%(version)s'] +sources = [SOURCE_TAR_XZ] +checksums = ['623d91fb2ab0a35049dc6098a0f235cc'] + +pythonversion = '2.7.11' +versionsuffix = "-Python-%s" % pythonversion + +mesaver = '11.0.8' +dependencies = [ + ('Boost', '1.59.0', versionsuffix), + ('MPFR', '3.1.3', '-GMP-6.1.0'), + ('Qt5', '5.5.1', '-Mesa-%s' % mesaver), + ('Mesa', '11.0.8', versionsuffix), + ('libGLU', '9.0.0', '-Mesa-%s' % mesaver), +] + +configopts = "-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include\;$EBROOTLIBGLU/include " +configopts += "-DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.%s " % SHLIB_EXT +configopts += "-DOPENGL_glu_LIBRARY=$EBROOTLIBGLU/lib/libGLU.%s " % SHLIB_EXT + +builddependencies = [ + ('CMake', '3.4.1'), +] + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-goalf-1.5.12-no-OFED.eb index 928c867d0ae75a3db31d679bc8e05b8608982b0c..01ff6a23298f0bc092165a2915861f797b5b9a67 100644 --- a/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-goalf-1.5.12-no-OFED.eb @@ -18,9 +18,9 @@ patches = [ ] # FFTW will automatically be used because of the toolchain -build_options = "FULL COLFFT PIPF" +build_options = "FULL COLFFT PIPF +DOMDEC -CMPI" -# Chose from: huge, xxlarge, xlarge, large, medium (the default), small, xsmall, reduce +# Choose from: huge, xxlarge, xlarge, large, medium (the default), small, xsmall, reduce system_size = "medium" moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-ictce-5.5.0-mt.eb b/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-ictce-5.5.0-mt.eb index 3485ce9ee917e80b35e1aaeb333e745c03044f6f..18d4e7d4ab6eb6c4d1b51b492d36551826ac7d6f 100644 --- a/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-ictce-5.5.0-mt.eb +++ b/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-ictce-5.5.0-mt.eb @@ -22,7 +22,7 @@ patches = [ # MKL activated automatically when the MKL is found, same for g09 build_options = "FULL COLFFT PIPF" -# Chose from: huge, xxlarge, xlarge, large, medium (the default), small, xsmall, reduce +# Choose from: huge, xxlarge, xlarge, large, medium (the default), small, xsmall, reduce system_size = "medium" moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-ictce-5.5.0.eb b/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-ictce-5.5.0.eb index 81f90923f074c6c2f744f04fe0dc746ab9b9542e..d7cd0f51f6f4d170457a50e775a0f3460c712f3a 100644 --- a/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-ictce-5.5.0.eb @@ -19,9 +19,9 @@ patches = [ ] # MKL activated automatically when the ictce toolchain is used -build_options = "FULL COLFFT PIPF" +build_options = "FULL COLFFT PIPF +DOMDEC -CMPI" -# Chose from: huge, xxlarge, xlarge, large, medium (the default), small, xsmall, reduce +# Choose from: huge, xxlarge, xlarge, large, medium (the default), small, xsmall, reduce system_size = "medium" moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-intel-2015a.eb b/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-intel-2015a.eb index 155eb5a8aee415696369bf728fba55305175dfd7..894f7b229756207b309950d60bd7cb582f7fc006 100644 --- a/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-intel-2015a.eb +++ b/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-intel-2015a.eb @@ -16,13 +16,13 @@ patches = [ "qmmm-pme-%(version)s.patch", "use-xhost-%(version)s.patch", "main-case-fix-%(version)s.patch", - 'CHARMM-37b2_fix-qgas-double-declared.patch', + 'CHARMM-%(version)s_fix-qgas-double-declared.patch', ] -# MKL activated automatically when the ictce toolchain is used -build_options = "FULL COLFFT PIPF" +# MKL activated automatically when the intel toolchain is used +build_options = "FULL COLFFT PIPF +DOMDEC -CMPI" -# Chose from: huge, xxlarge, xlarge, large, medium (the default), small, xsmall, reduce +# Choose from: huge, xxlarge, xlarge, large, medium (the default), small, xsmall, reduce system_size = "medium" moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-intel-2015b.eb b/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-intel-2015b.eb index 417f7a87856a0351912c83ceb53806f1a5fc0a43..de51fe23be51742cdcb2e83749b24dae07078aed 100644 --- a/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-intel-2015b.eb +++ b/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-intel-2015b.eb @@ -16,13 +16,13 @@ patches = [ "qmmm-pme-%(version)s.patch", "use-xhost-%(version)s.patch", "main-case-fix-%(version)s.patch", - 'CHARMM-37b2_fix-qgas-double-declared.patch', + 'CHARMM-%(version)s_fix-qgas-double-declared.patch', ] -# MKL activated automatically when the ictce toolchain is used -build_options = "FULL COLFFT PIPF" +# MKL activated automatically when the intel toolchain is used +build_options = "FULL COLFFT PIPF +DOMDEC -CMPI" -# Chose from: huge, xxlarge, xlarge, large, medium (the default), small, xsmall, reduce +# Choose from: huge, xxlarge, xlarge, large, medium (the default), small, xsmall, reduce system_size = "medium" moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-intel-2016a.eb b/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..100fe610032535f698bfb4e1c1ffea3962e11d74 --- /dev/null +++ b/easybuild/easyconfigs/c/CHARMM/CHARMM-37b2-intel-2016a.eb @@ -0,0 +1,28 @@ +# Authors:: Ward Poelmans + +name = 'CHARMM' +version = '37b2' + +homepage = "http://www.charmm.org" +description = """CHARMM (Chemistry at HARvard Macromolecular Mechanics) is a versatile +and widely used molecular simulation program with broad application to many-particle systems.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = ["c%(version)s.tar.gz"] + +patches = [ + "qmmm-pme-%(version)s.patch", + "use-xhost-%(version)s.patch", + "main-case-fix-%(version)s.patch", + 'CHARMM-%(version)s_fix-qgas-double-declared.patch', +] + +# MKL activated automatically when the intel toolchain is used +build_options = "FULL COLFFT PIPF +DOMDEC -CMPI" + +# Choose from: huge, xxlarge, xlarge, large, medium (the default), small, xsmall, reduce +system_size = "medium" + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.3.1-intel-2015a.eb b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.3.1-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..0e9493dbb4176541ba3eb88086e6720f3f81e296 --- /dev/null +++ b/easybuild/easyconfigs/c/CLHEP/CLHEP-2.1.3.1-intel-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'CMakeMake' + +name = 'CLHEP' +version = '2.1.3.1' + +homepage = 'http://proj-clhep.web.cern.ch/proj-clhep/' +description = """The CLHEP project is intended to be a set of HEP-specific foundation and + utility classes such as random generators, physics vectors, geometry and linear algebra. + CLHEP is structured in a set of packages independent of any external package.""" + + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TGZ] +source_urls = ['http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/'] + +builddependencies = [('CMake', '3.1.3')] + +separate_build_dir = True + +configopts = '-DCMAKE_BUILD_TYPE=Release' + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/c/CLooG/CLooG-0.18.1-GCC-4.8.2.eb b/easybuild/easyconfigs/c/CLooG/CLooG-0.18.1-GCC-4.8.2.eb index 3ca4fbb07d4799db93849f3752ef63c2d444aad1..fbd1e0f85d8b8f54020e71169da7cb01bb47f8eb 100644 --- a/easybuild/easyconfigs/c/CLooG/CLooG-0.18.1-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/CLooG/CLooG-0.18.1-GCC-4.8.2.eb @@ -20,7 +20,7 @@ source_urls = ['http://www.bastoul.net/cloog/pages/download/'] dependencies = [('GMP', '5.1.3')] sanity_check_paths = { - 'files': ['bin/cloog', 'lib/libcloog-isl.so', 'lib/libisl.so'], + 'files': ['bin/cloog', 'lib/libcloog-isl.%s' % SHLIB_EXT, 'lib/libisl.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-7.1.2.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-7.1.2.eb index 48bd837709078f6375b40a3cd2f320004cdf9e68..97f1c8805395161c027c97d9a1bbc1c54138e552 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-ictce-7.1.2.eb @@ -7,7 +7,7 @@ homepage = 'http://www.cmake.org' description = """CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.""" -toolchain = {'name': 'ictce', 'version': '7.1.2'} +toolchain = {'name': 'ictce', 'version': '7.1.2'} source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-intel-2014b.eb b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-intel-2014b.eb index 7749fdcd0283adfb9fb301425f96d6148b14ec9c..93127430ded9ba65bfb1c1e248242037ff83c8d7 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-2.8.12-intel-2014b.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-2.8.12-intel-2014b.eb @@ -7,7 +7,7 @@ homepage = 'http://www.cmake.org' description = """CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.""" -toolchain = {'name': 'intel', 'version': '2014b'} +toolchain = {'name': 'intel', 'version': '2014b'} source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.1.3.eb b/easybuild/easyconfigs/c/CMake/CMake-3.1.3.eb index d2b515088f737c17fe88added3a4bab2d7bed6ca..873f4f2f7250a39e9c4910ad6506ab8298621f7b 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-3.1.3.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-3.1.3.eb @@ -7,7 +7,7 @@ homepage = 'http://www.cmake.org' description = """CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-2015.06-XC.eb similarity index 85% rename from easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.25.eb rename to easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-2015.06-XC.eb index 75190be28b5c848573e3fdf32fb4ff49253c168a..d4b9c663529b41bc34a4a86ca6707bb3812c127e 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-2015.06-XC.eb @@ -7,8 +7,7 @@ homepage = 'http://www.cmake.org' description = """CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} -toolchainopts = {'dynamic': True} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-2015.11-XC.eb similarity index 85% rename from easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.40.eb rename to easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-2015.11-XC.eb index 275dc8cadadb1e9c3bf7f6d2a8f318b6ade52e9a..1a73916b52324dba8eda1b73de3525986a6880c5 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.2.40.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-2015.11-XC.eb @@ -7,8 +7,7 @@ homepage = 'http://www.cmake.org' description = """CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} -toolchainopts = {'dynamic': True} +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.3.1.eb b/easybuild/easyconfigs/c/CMake/CMake-3.3.1.eb index 3107e6dbdffd82b11b418d575929710f4dbb7086..fea9079c88e4e488007f7683e4120d27351c9824 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-3.3.1.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-3.3.1.eb @@ -7,7 +7,7 @@ homepage = 'http://www.cmake.org' description = """CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/c/CMake/CMake-3.4.1-GCC-4.9.2.eb similarity index 82% rename from easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.1.29.eb rename to easybuild/easyconfigs/c/CMake/CMake-3.4.1-GCC-4.9.2.eb index 68df962efa687871ddddaeec1a9850346b4eafc2..cb117db3226d4a7d5c796c422ea7ec9d2d8cc35e 100644 --- a/easybuild/easyconfigs/c/CMake/CMake-3.2.2-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/c/CMake/CMake-3.4.1-GCC-4.9.2.eb @@ -1,14 +1,13 @@ easyblock = 'ConfigureMake' name = 'CMake' -version = '3.2.2' +version = '3.4.1' homepage = 'http://www.cmake.org' description = """CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.""" -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} -toolchainopts = {'dynamic': True} +toolchain = {'name': 'GCC', 'version': '4.9.2'} source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.4.1-GCCcore-4.9.3.eb b/easybuild/easyconfigs/c/CMake/CMake-3.4.1-GCCcore-4.9.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..1a599467bd455977ac991cd3adcb113dd1b5ac49 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.4.1-GCCcore-4.9.3.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.4.1' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'GCCcore', 'version': '4.9.3'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [('binutils', '2.25')] + +configopts = '-- -DCMAKE_USE_OPENSSL=1' + +dependencies = [ + ('ncurses', '6.0'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + #('OpenSSL', '1.0.1p'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.4.1-foss-2015a.eb b/easybuild/easyconfigs/c/CMake/CMake-3.4.1-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..4f9c1dcfa2ca5ca1cdfd6ba248f226d74380dd0c --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.4.1-foss-2015a.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.4.1' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = '-- -DCMAKE_USE_OPENSSL=1' + +dependencies = [ + ('ncurses', '5.9'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.4.1-foss-2015b.eb b/easybuild/easyconfigs/c/CMake/CMake-3.4.1-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..5702e9976db58d9e561616805e5a771274befcc4 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.4.1-foss-2015b.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.4.1' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = '-- -DCMAKE_USE_OPENSSL=1' + +dependencies = [ + ('ncurses', '5.9'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + #('OpenSSL', '1.0.1p'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.4.1-foss-2016a.eb b/easybuild/easyconfigs/c/CMake/CMake-3.4.1-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..87dc8ebec4ef0dca2936c93194536d60b38f6340 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.4.1-foss-2016a.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.4.1' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'foss', 'version': '2016a'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = '-- -DCMAKE_USE_OPENSSL=1' + +dependencies = [ + ('ncurses', '6.0'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + #('OpenSSL', '1.0.1p'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.4.1-intel-2016a.eb b/easybuild/easyconfigs/c/CMake/CMake-3.4.1-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..db841bbaef4d9b13ca4b89f411d499d3f268c879 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.4.1-intel-2016a.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.4.1' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = '-- -DCMAKE_USE_OPENSSL=1' + +dependencies = [ + ('ncurses', '6.0'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + #('OpenSSL', '1.0.1p'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.4.3-foss-2016a.eb b/easybuild/easyconfigs/c/CMake/CMake-3.4.3-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..e6beb92beec75b68d631264600ddc139f381db97 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.4.3-foss-2016a.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.4.3' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'foss', 'version': '2016a'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = '-- -DCMAKE_USE_OPENSSL=1' + +dependencies = [ + ('ncurses', '6.0'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + #('OpenSSL', '1.0.1p'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CMake/CMake-3.4.3-intel-2016a.eb b/easybuild/easyconfigs/c/CMake/CMake-3.4.3-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..31b70f1b8ad9103d977bedd2830901882b501e41 --- /dev/null +++ b/easybuild/easyconfigs/c/CMake/CMake-3.4.3-intel-2016a.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'CMake' +version = '3.4.3' + +homepage = 'http://www.cmake.org' +description = """CMake, the cross-platform, open-source build system. + CMake is a family of tools designed to build, test and package software.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['http://www.cmake.org/files/v%(version_major_minor)s'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = '-- -DCMAKE_USE_OPENSSL=1' + +dependencies = [ + ('ncurses', '6.0'), + # OS dependency should be preferred if the os version is more recent then this version, + # it's nice to have an up to date openssl for security reasons + #('OpenSSL', '1.0.1p'), +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ['cmake', 'cpack', 'ctest']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/c/CONTRAfold/CONTRAfold-2.02-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CONTRAfold/CONTRAfold-2.02-goolf-1.4.10.eb index f772aaa29cdaed52dd453f8867154cee139cd1ad..7f2755eaba59e0985222fc89c2b130653afc453e 100644 --- a/easybuild/easyconfigs/c/CONTRAfold/CONTRAfold-2.02-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CONTRAfold/CONTRAfold-2.02-goolf-1.4.10.eb @@ -14,14 +14,14 @@ description = ''' CONditional TRAining for RNA Secondary Structure Prediction ' toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = [homepage] -sources = ['%s_v%s.tar.gz' % (name.lower(),version.replace('.','_'))] +sources = ['%%(namelower)s_v%s.tar.gz' % version.replace('.', '_')] patches = ['contrafold-gcc47.patch'] start_dir = 'src' -files_to_copy = [(['score_prediction', 'contrafold', 'score_directory.pl',\ - 'roc_area.pl', 'MakeDefaults.pl'], 'bin'), '../doc'] +binaries = ['score_prediction', 'contrafold', 'score_directory.pl', 'roc_area.pl', 'MakeDefaults.pl'] +files_to_copy = [(binaries, 'bin'), '../doc'] sanity_check_paths = { 'files': ['bin/score_prediction', 'bin/contrafold'], diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-2015.06-XC.eb similarity index 94% rename from easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.25.eb rename to easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-2015.06-XC.eb index 43baa97a11a4003b107ffe43d08be06b7d80faca..c1c02c3bcf4b69bced94dcce520b688d74b3bdb7 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-2015.06-XC.eb @@ -7,7 +7,7 @@ description = """CP2K is a freely available (GPL) program, written in Fortran 95 methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials. """ -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_BZ2] diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-2015.11-XC.eb similarity index 94% rename from easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.40.eb rename to easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-2015.11-XC.eb index eea0ba5f731dbd8900fc765f4fdf3536d201d5ed..18250df781e1b68d3cb16bea772d891a0c901a44 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.2.40.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-2015.11-XC.eb @@ -7,7 +7,7 @@ description = """CP2K is a freely available (GPL) program, written in Fortran 95 methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials. """ -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_BZ2] diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.1.29.eb deleted file mode 100644 index e1f9bdb729ac280e4ffb7cd4ea0c6b1a5696daf5..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/c/CP2K/CP2K-2.6.0-CrayGNU-5.1.29.eb +++ /dev/null @@ -1,38 +0,0 @@ -name = 'CP2K' -version = '2.6.0' - -homepage = 'http://www.cp2k.org/' -description = """CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular - simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different - methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and - classical pair and many-body potentials. """ - -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} -toolchainopts = {'pic': True} - -sources = [SOURCELOWER_TAR_BZ2] -source_urls = [SOURCEFORGE_SOURCE] - -patches = [ - 'CP2K-2.6.0-ifort-compiler-bug-fix.patch', - 'CP2K-2.4.0-fix_compile_date_lastsvn.patch', -] - -dependencies = [ - ('Libint', '1.1.4'), - ('libxc', '2.2.1'), -] - -builddependencies = [ - ('flex', '2.5.39'), - ('Bison', '3.0.2'), -] - -# don't use parallel make, results in compilation failure -# because Fortran module files aren't created before they are needed -parallel = 1 - -# regression test reports failures -ignore_regtest_fails = True - -moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-gmacml-1.7.0-libsmm.eb b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-gmacml-1.7.0-libsmm.eb index fb47d44650fe9041d57334fd087801816e3176aa..ae5eb6f8dc35487ff58447dbd0ad26fd086d95bb 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-gmacml-1.7.0-libsmm.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-gmacml-1.7.0-libsmm.eb @@ -13,25 +13,25 @@ toolchain = {'name': 'gmacml', 'version': '1.7.0'} sources = [SOURCE_TAR_GZ] patches = [ - 'fix_compile_date_lastcvs.patch', - 'do_regtest_nocompile.patch', - ] + 'fix_compile_date_lastcvs.patch', + 'do_regtest_nocompile.patch', +] builddependencies = [ - ('flex', '2.5.35'), - ('Bison', '2.5'), - ] + ('flex', '2.5.35'), + ('Bison', '2.5'), +] dependencies = [ - ('Libint', '1.1.4'), - ('libsmm', version), - ] + ('Libint', '1.1.4'), + ('libsmm', version), +] # don't use parallel make, results in compilation failure # because Fortran module files aren't created before they are needed parallel = 1 # regression test reports failures (1/2196 tests fail with segfault) -ignore_regtest_fails=True +ignore_regtest_fails = True moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goalf-1.1.0-no-OFED-libsmm.eb b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goalf-1.1.0-no-OFED-libsmm.eb index b2c0a55708e946e65c6ec40b0a26f14f7b82585b..3ecba232f18e73edbb24648c5c90528b4a9957ff 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goalf-1.1.0-no-OFED-libsmm.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goalf-1.1.0-no-OFED-libsmm.eb @@ -13,19 +13,19 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sources = [SOURCE_TAR_GZ] patches = [ - 'fix_compile_date_lastcvs.patch', - 'do_regtest_nocompile.patch' - ] + 'fix_compile_date_lastcvs.patch', + 'do_regtest_nocompile.patch' +] builddependencies = [ - ('flex', '2.5.35'), - ('Bison', '2.5') - ] + ('flex', '2.5.35'), + ('Bison', '2.5') +] dependencies = [ - ('Libint', '1.1.4'), - ('libsmm', '20111205') - ] + ('Libint', '1.1.4'), + ('libsmm', '20111205') +] # don't use parallel make, results in compilation failure # because Fortran module files aren't created before they are needed diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goalf-1.1.0-no-OFED-psmp.eb b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goalf-1.1.0-no-OFED-psmp.eb index 09bbad25c0517b875cf597d22c575835a2a5d17f..ede4ebe0fc707cb84b87e0b6ec2ae24e90a01664 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goalf-1.1.0-no-OFED-psmp.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goalf-1.1.0-no-OFED-psmp.eb @@ -13,15 +13,15 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sources = [SOURCE_TAR_GZ] patches = [ - 'fix_compile_date_lastcvs.patch', - 'do_regtest_nocompile.patch', - 'fix_psmp_build.patch' - ] + 'fix_compile_date_lastcvs.patch', + 'do_regtest_nocompile.patch', + 'fix_psmp_build.patch' +] builddependencies = [ - ('flex', '2.5.35'), - ('Bison', '2.5') - ] + ('flex', '2.5.35'), + ('Bison', '2.5') +] dependencies = [('Libint', '1.1.4')] diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goalf-1.1.0-no-OFED.eb index 06ae6f94443db328dc319f3b2f7e6d297c8e4d20..e3679af61b627f6251e16d113819e8f1dc49442b 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goalf-1.1.0-no-OFED.eb @@ -12,14 +12,14 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sources = [SOURCE_TAR_GZ] patches = [ - 'fix_compile_date_lastcvs.patch', - 'do_regtest_nocompile.patch' - ] + 'fix_compile_date_lastcvs.patch', + 'do_regtest_nocompile.patch' +] builddependencies = [ - ('flex', '2.5.35'), - ('Bison', '2.5') - ] + ('flex', '2.5.35'), + ('Bison', '2.5') +] dependencies = [('Libint', '1.1.4')] diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goolf-1.4.10-libsmm.eb b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goolf-1.4.10-libsmm.eb index 7366879bfdc001c9863d4304485acb788665519a..70f7866473f3faa2e30fa97a056e449913172e88 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goolf-1.4.10-libsmm.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goolf-1.4.10-libsmm.eb @@ -13,25 +13,25 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} sources = [SOURCE_TAR_GZ] patches = [ - 'fix_compile_date_lastcvs.patch', - 'do_regtest_nocompile.patch' - ] + 'fix_compile_date_lastcvs.patch', + 'do_regtest_nocompile.patch' +] builddependencies = [ - ('flex', '2.5.35'), - ('Bison', '2.5') - ] + ('flex', '2.5.35'), + ('Bison', '2.5') +] dependencies = [ - ('Libint', '1.1.4'), - ('libsmm', '20111205') - ] + ('Libint', '1.1.4'), + ('libsmm', '20111205') +] # don't use parallel make, results in compilation failure # because Fortran module files aren't created before they are needed parallel = 1 # about 100 tests fail -ignore_regtest_fails=True +ignore_regtest_fails = True moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goolf-1.4.10-psmp.eb b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goolf-1.4.10-psmp.eb index a2f304ace23960b9406e9e98a8a5c9349be9800c..df760b1c153662d76a06eda178f3cc9f008e9a2c 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goolf-1.4.10-psmp.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goolf-1.4.10-psmp.eb @@ -13,15 +13,15 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} sources = [SOURCE_TAR_GZ] patches = [ - 'fix_compile_date_lastcvs.patch', - 'do_regtest_nocompile.patch', - 'fix_psmp_build.patch' - ] + 'fix_compile_date_lastcvs.patch', + 'do_regtest_nocompile.patch', + 'fix_psmp_build.patch' +] builddependencies = [ - ('flex', '2.5.35'), - ('Bison', '2.5') - ] + ('flex', '2.5.35'), + ('Bison', '2.5') +] dependencies = [('Libint', '1.1.4')] diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goolf-1.4.10.eb b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goolf-1.4.10.eb index 3d113cc1d8c7607522917d3a3b677950cb53e977..10f8d7440a7a86e1c7ee3fc10a0a1c88a08c695f 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-goolf-1.4.10.eb @@ -12,14 +12,14 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} sources = [SOURCE_TAR_GZ] patches = [ - 'fix_compile_date_lastcvs.patch', - 'do_regtest_nocompile.patch' - ] + 'fix_compile_date_lastcvs.patch', + 'do_regtest_nocompile.patch' +] builddependencies = [ - ('flex', '2.5.35'), - ('Bison', '2.5') - ] + ('flex', '2.5.35'), + ('Bison', '2.5') +] dependencies = [('Libint', '1.1.4')] @@ -28,6 +28,6 @@ dependencies = [('Libint', '1.1.4')] parallel = 1 # about 100 tests fail -ignore_regtest_fails=True +ignore_regtest_fails = True moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-ictce-3.2.2.u3.eb index 1862b31e51a47aca0f44ce36da909c2f76a3f618..6e21a831bc8a75e1907fd3a0084cda58468009d0 100644 --- a/easybuild/easyconfigs/c/CP2K/CP2K-20111205-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/c/CP2K/CP2K-20111205-ictce-3.2.2.u3.eb @@ -12,14 +12,14 @@ toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} sources = [SOURCE_TAR_GZ] patches = [ - 'fix_compile_date_lastcvs.patch', - 'do_regtest_nocompile.patch' - ] + 'fix_compile_date_lastcvs.patch', + 'do_regtest_nocompile.patch' +] builddependencies = [ - ('flex', '2.5.35'), - ('Bison', '2.5') - ] + ('flex', '2.5.35'), + ('Bison', '2.5') +] dependencies = [('Libint', '1.1.4')] diff --git a/easybuild/easyconfigs/c/CPLEX/CPLEX-12.4.eb b/easybuild/easyconfigs/c/CPLEX/CPLEX-12.4.eb index 2536b8c9d5e31f2a5b226ec082e22f0f1371bee7..128e2f2ae34f544365601ec40ef6e97e895981f4 100644 --- a/easybuild/easyconfigs/c/CPLEX/CPLEX-12.4.eb +++ b/easybuild/easyconfigs/c/CPLEX/CPLEX-12.4.eb @@ -1,13 +1,17 @@ name = 'CPLEX' version = '12.4' -homepage = 'http://www-01.ibm.com/software/integration/optimization/cplex-optimizer/' +homepage = 'http://www-01.ibm.com/software/commerce/optimization/cplex-optimizer/' description = """IBM ILOG CPLEX Optimizer's mathematical programming technology enables analytical decision support for improving efficiency, reducing costs, and increasing profitability.""" toolchain = {'name': 'dummy', 'version': 'dummy'} +# the Academic Initiative version (as used in this file) can be downloaded as described on +# https://www.ibm.com/developerworks/community/blogs/jfp/entry/cplex_studio_in_ibm_academic_initiative?lang=en +# a restricted "Community edition" version can be found on +# https://www-01.ibm.com/software/websphere/products/optimization/cplex-studio-community-edition/ sources = ['cplex_studio%s.linux-x86-64.bin' % ''.join(version.split('.'))] moduleclass = 'math' diff --git a/easybuild/easyconfigs/c/CPLEX/CPLEX-12.6.3-foss-2015b.eb b/easybuild/easyconfigs/c/CPLEX/CPLEX-12.6.3-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..fc4d0275894cf750c0fb5e2672e3110a57311cc6 --- /dev/null +++ b/easybuild/easyconfigs/c/CPLEX/CPLEX-12.6.3-foss-2015b.eb @@ -0,0 +1,21 @@ +name = 'CPLEX' +version = '12.6.3' + +homepage = 'http://www-01.ibm.com/software/commerce/optimization/cplex-optimizer/' +description = """IBM ILOG CPLEX Optimizer's mathematical programming technology enables + analytical decision support for improving efficiency, + reducing costs, and increasing profitability.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +# the Academic Initiative version (as used in this file) can be downloaded as described on +# https://www.ibm.com/developerworks/community/blogs/jfp/entry/cplex_studio_in_ibm_academic_initiative?lang=en +# a restricted "Community edition" version can be found on +# https://www-01.ibm.com/software/websphere/products/optimization/cplex-studio-community-edition/ +sources = ['cplex_studio%s.linux-x86-64.bin' % ''.join(version.split('.'))] + +dependencies = [ + ('Java', '1.8.0_66', '', True), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb index 4c8b4e861d4a8a0ca926d9c336d0620d32adc49b..299410b70c78ed6b7fc80e299e0883408606fd9a 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-1.eb @@ -31,7 +31,7 @@ if OS_NAME in ['fedora', 'redhat']: elif OS_NAME in ["RHEL", "SL", "centos"]: system = 'rhel%s.x' % OS_VERSION.split('.')[0] elif OS_NAME in ['debian'] and OS_VERSION.startswith('6.'): - system = 'ubuntu10.04' + system = 'ubuntu10.04' elif OS_NAME in ['debian', 'ubuntu']: if OS_VERSION in ['11.10', '10.04']: system = 'ubuntu%s' % OS_VERSION diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-GCC-4.6.4-1.eb b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-GCC-4.6.4-1.eb index b7d19819664058b4592950b8e5c4e8dd61b0e977..9b2a072f8b8b668acd1594415a83634eec62a8f2 100644 --- a/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-GCC-4.6.4-1.eb +++ b/easybuild/easyconfigs/c/CUDA/CUDA-5.0.35-GCC-4.6.4-1.eb @@ -31,7 +31,7 @@ if OS_NAME in ['fedora', 'redhat']: elif OS_NAME in ["RHEL", "SL", "centos"]: system = 'rhel%s.x' % OS_VERSION.split('.')[0] elif OS_NAME in ['debian'] and OS_VERSION.startswith('6.'): - system = 'ubuntu10.04' + system = 'ubuntu10.04' elif OS_NAME in ['debian', 'ubuntu']: if OS_VERSION in ['11.10', '10.04']: system = 'ubuntu%s' % OS_VERSION diff --git a/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2015.3.187-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2015.3.187-GNU-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..f2ca68b5c14c5f44312491f6fbbc352095c74be0 --- /dev/null +++ b/easybuild/easyconfigs/c/CUDA/CUDA-7.5.18-iccifort-2015.3.187-GNU-4.9.3-2.25.eb @@ -0,0 +1,43 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB, Ghent University, +# Forschungszentrum Juelich +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste +# Authors:: Damian Alvarez +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-99.html +## + +#easyblock = 'ConfigureMake' + +name = 'CUDA' +version = '7.5.18' + +homepage = 'https://developer.nvidia.com/cuda-toolkit' +description = """CUDA (formerly Compute Unified Device Architecture) is a parallel + computing platform and programming model created by NVIDIA and implemented by the + graphics processing units (GPUs) that they produce. CUDA gives developers access + to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.""" + +toolchain = {'name': 'iccifort', 'version': '2015.3.187-GNU-4.9.3-2.25'} + +source_urls = ['http://developer.download.nvidia.com/compute/cuda/%(version_major_minor)s/Prod/local_installers/'] + +sources = ['%(namelower)s_%(version)s_linux.run'] +checksums = ['4b3bcecf0dfc35928a0898793cf3e4c6'] + +# Necessary to allow to use a GCC 4.9.3 toolchain, as CUDA by default just supports up to 4.9.2. +# Tested, but not throughly, so it is not guaranteed to don't cause problems +installopts = '-override compiler' + +host_compilers = ["icpc", "g++"] + +# Be careful and have a message consistent with the generated wrappers +modloadmsg = "nvcc uses g++ as the default host compiler. If you want to use icpc as a host compiler you can use" +modloadmsg += " nvcc_icpc, or nvcc -ccbin=icpc. Likewise, a g++ wrapper called nvcc_g++ has been also created." + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb index 19a3bd716f9177a5ae22ef51b907e2359d25ab46..b8b9c80a8dfe52f5ceff3631716f8f42f49ed28c 100644 --- a/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/CVS/CVS-1.11.23-GCC-4.8.2.eb @@ -19,7 +19,7 @@ sources = [SOURCELOWER_TAR_BZ2] patches = ['CVS-1.11.23-zlib-1.patch', 'CVS-1.11.23-getline.patch'] -dependencies = [('zlib','1.2.8')] +dependencies = [('zlib', '1.2.8')] sanity_check_paths = { 'files': ['bin/cvs', 'bin/cvsbug', 'bin/rcs2log'], diff --git a/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.4.10.eb index 89d4bf646096eb7e40ac4628060c7f2f10b15e16..eb2d005b6fe33719b6abc670e00d1c3d450e8cf4 100644 --- a/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.4.10.eb @@ -1,7 +1,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel -# SIB Swiss Institute of Bioinformatics +# SIB Swiss Institute of Bioinformatics easyblock = 'ConfigureMake' @@ -31,14 +31,14 @@ installopts += 'cp -a tools/ %(installdir)s && ' installopts += 'cp -a README doc/ %(installdir)s' sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["chipcenter", "chipcor", "chipextract", "chippart", "chippeak", - "chipscore", "compactsga", "counts_filter", "countsga", "featreplace"]], + 'files': ["bin/%s" % x for x in ["chipcenter", "chipcor", "chipextract", "chippart", "chippeak", + "chipscore", "compactsga", "counts_filter", "countsga", "featreplace"]], 'dirs': [] } # add tools dir to PATH -modextrapaths = { - 'PATH': "tools", +modextrapaths = { + 'PATH': "tools", } # fix shebang line in all provided perl scripts in tools folder diff --git a/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.7.20.eb b/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.7.20.eb index d273ae8dd8589b6bf298524b06601eb7c85d33c2..dcbe783b38e9c51a8140d81bdb4c9bc7ef482533 100644 --- a/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.7.20.eb @@ -1,7 +1,7 @@ # This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # Author: Pablo Escobar Lopez # sciCORE - University of Basel -# SIB Swiss Institute of Bioinformatics +# SIB Swiss Institute of Bioinformatics easyblock = 'ConfigureMake' @@ -31,14 +31,14 @@ installopts += 'cp -a tools/ %(installdir)s && ' installopts += 'cp -a README doc/ %(installdir)s' sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["chipcenter", "chipcor", "chipextract", "chippart", "chippeak", - "chipscore", "compactsga", "counts_filter", "countsga", "featreplace"]], + 'files': ["bin/%s" % x for x in ["chipcenter", "chipcor", "chipextract", "chippart", "chippeak", + "chipscore", "compactsga", "counts_filter", "countsga", "featreplace"]], 'dirs': [] } # add tools dir to PATH -modextrapaths = { - 'PATH': "tools", +modextrapaths = { + 'PATH': "tools", } # fix shebang line in all provided perl scripts in tools folder diff --git a/easybuild/easyconfigs/c/CheMPS2/CheMPS2-1.6-intel-2016a.eb b/easybuild/easyconfigs/c/CheMPS2/CheMPS2-1.6-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..aab739ed1901a03e0aa2af38f5e0159a956672e6 --- /dev/null +++ b/easybuild/easyconfigs/c/CheMPS2/CheMPS2-1.6-intel-2016a.eb @@ -0,0 +1,33 @@ +easyblock = 'CMakeMake' + +name = 'CheMPS2' +version = '1.6' + +homepage = 'https://github.com/SebWouters/CheMPS2' +description = """CheMPS2 is a scientific library which contains a spin-adapted implementation of the +density matrix renormalization group (DMRG) for ab initio quantum chemistry.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = ['v%(version)s.tar.gz'] +source_urls = ['https://github.com/SebWouters/CheMPS2/archive/'] + +builddependencies = [('CMake', '3.4.1')] + +dependencies = [ + ('GSL', '2.1'), + ('HDF5', '1.8.16') +] + +buildopts = 'VERBOSE=1' + +runtest = 'test' + +separate_build_dir = True + +sanity_check_paths = { + 'files': ['bin/chemps2', 'lib64/libchemps2.%s' % SHLIB_EXT, 'lib64/libchemps2.a'], + 'dirs': ['include/chemps2'] +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb b/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb index 5e9ad2796eebd73f9c46651b19eb55143e7aef8a..d050aae52b8c56e1aade50d9f3e18d3cb23d55c2 100644 --- a/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb +++ b/easybuild/easyconfigs/c/Chimera/Chimera-1.10-linux_x86_64.eb @@ -12,7 +12,7 @@ description = """ UCSF Chimera is a highly extensible program for interactive vi and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. """ -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} # no public download URL. Go to https://www.cgl.ucsf.edu/chimera/download.html sources = ['%(namelower)s-%(version)s%(versionsuffix)s.bin'] diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.2-GCC-4.7.3.eb b/easybuild/easyconfigs/c/Clang/Clang-3.2-GCC-4.7.3.eb index 36fb2222445f06ebe32b2d5803379e128a8f5f97..05ffad5f40050721abb9ab13ce5b834869f37acd 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.2-GCC-4.7.3.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.2-GCC-4.7.3.eb @@ -34,7 +34,7 @@ patches = ['Clang-3.2-failing-tests-due-to-gcc-installation-prefix.patch'] builddependencies = [('CMake', '2.8.4')] sanity_check_paths = { - 'files': ['bin/clang', 'bin/clang++', 'lib/libclang.so', 'lib/clang/3.2/include/stddef.h'], + 'files': ['bin/clang', 'bin/clang++', 'lib/libclang.%s' % SHLIB_EXT, 'lib/clang/3.2/include/stddef.h'], 'dirs': [] } diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb index 40f0a86d6f88f57be99c3c2828537ba9a17af9c6..9d5881c5250a6cf474e9d06fc8a84adf17e36483 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.0-GCC-4.9.2.eb @@ -32,7 +32,7 @@ sources = [ dependencies = [ ('GMP', '6.0.0a'), ('ISL', '0.14'), -] +] builddependencies = [ ('CMake', '3.1.3'), diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb b/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb index 966759d71cd17ea26dc4cf0cbe3336c20850e610..bb31f282f683df73565a76cf2571cf135fbcbf05 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.6.1-GCC-4.9.2.eb @@ -32,7 +32,7 @@ sources = [ dependencies = [ ('GMP', '6.0.0a'), ('ISL', '0.14'), -] +] builddependencies = [ ('CMake', '3.2.1'), diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.7.0-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/c/Clang/Clang-3.7.0-GNU-4.9.3-2.25.eb index 94e343f08b410161bfe14f997105b486c32c22f1..a76712524b49bcd774a310ab13baf91ea92b1b9d 100644 --- a/easybuild/easyconfigs/c/Clang/Clang-3.7.0-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/c/Clang/Clang-3.7.0-GNU-4.9.3-2.25.eb @@ -32,7 +32,7 @@ sources = [ dependencies = [ ('GMP', '6.0.0a'), ('ISL', '0.15'), -] +] builddependencies = [ ('CMake', '3.3.2'), diff --git a/easybuild/easyconfigs/c/Clang/Clang-3.7.1-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/c/Clang/Clang-3.7.1-GCC-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..ee437ef2f241e6a2657428b6386a029e70682ebc --- /dev/null +++ b/easybuild/easyconfigs/c/Clang/Clang-3.7.1-GCC-4.9.3-2.25.eb @@ -0,0 +1,49 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2013-2015 Dmitri Gribenko, Ward Poelmans +# Authors:: Dmitri Gribenko +# Authors:: Ward Poelmans +# License:: GPLv2 or later, MIT, three-clause BSD. +# $Id$ +## + +name = "Clang" +version = "3.7.1" + +homepage = "http://clang.llvm.org/" +description = """C, C++, Objective-C compiler, based on LLVM. Does not + include C++ standard library -- use libstdc++ from GCC.""" + +# Clang also depends on libstdc++ during runtime, but this dependency is +# already specified as the toolchain. +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} +# Do not set optarch to True: it will cause the build to fail +toolchainopts = {'optarch': False} + +source_urls = ["http://llvm.org/releases/%(version)s"] +sources = [ + "llvm-%(version)s.src.tar.xz", + "cfe-%(version)s.src.tar.xz", + "compiler-rt-%(version)s.src.tar.xz", + "polly-%(version)s.src.tar.xz", +] + +dependencies = [ + ('GMP', '6.1.0'), + ('ISL', '0.15'), +] + +builddependencies = [ + ('CMake', '3.4.1', '', ('GCCcore', '4.9.3')), + ('Python', '2.7.10', '-bare'), + ('libxml2', '2.9.2'), +] + +assertions = True + +usepolly = True + +build_targets = ['X86'] + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2015b.eb b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..2ddcf2b93a966536e58d0f3b66580713a020d497 --- /dev/null +++ b/easybuild/easyconfigs/c/Clustal-Omega/Clustal-Omega-1.2.0-foss-2015b.eb @@ -0,0 +1,29 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'Clustal-Omega' +version = '1.2.0' + +homepage = 'http://www.clustal.org/omega/' +description = """ Clustal Omega is a multiple sequence alignment + program for proteins. It produces biologically meaningful multiple + sequence alignments of divergent sequences. Evolutionary relationships + can be seen via viewing Cladograms or Phylograms """ + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = [homepage] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('argtable', '2.13')] + +sanity_check_paths = { + 'files': ['bin/clustalo'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2015b.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..2c61c0adb7d81a9fce6ab562c6cda4ce996f6d3a --- /dev/null +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-foss-2015b.eb @@ -0,0 +1,32 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'ConfigureMake' + +name = 'ClustalW2' +version = '2.1' + +homepage = 'http://www.ebi.ac.uk/Tools/msa/clustalw2/' +description = """ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins.""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.clustal.org/download/%(version)s'] +sources = ['clustalw-%(version)s.tar.gz'] + +sanity_check_paths = { + 'files': ['bin/clustalw2'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb index 141abe9b6a5f8592a83f2c77d0ac50e169724ecb..0649ad44a0cf79a918cdd74a09fa833478165b28 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goalf-1.1.0-no-OFED.eb @@ -25,8 +25,8 @@ sources = ['%s-%s.tar.gz' % (name[:-1].lower(), version)] source_urls = ['ftp://ftp.ebi.ac.uk/pub/software/%s/%s' % (name.lower(), version)] sanity_check_paths = { - 'files': ['bin/clustalw2'], - 'dirs': [] - } + 'files': ['bin/clustalw2'], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb index 0c4dba86a682493e50a48e6290da78335763201a..de52a79a13ccbd698ec83a6f90c6c85c7829f6c8 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-goolf-1.4.10.eb @@ -25,8 +25,8 @@ sources = ['%s-%s.tar.gz' % (name[:-1].lower(), version)] source_urls = ['ftp://ftp.ebi.ac.uk/pub/software/%s/%s' % (name.lower(), version)] sanity_check_paths = { - 'files': ['bin/clustalw2'], - 'dirs': [] - } + 'files': ['bin/clustalw2'], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb index 93dc9500bdd473acd219edb8d495cc22b240cecf..cad6e2ddab6934b271d90ea7ae8a9bc7fa073c86 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-4.0.6.eb @@ -25,8 +25,8 @@ sources = ['%s-%s.tar.gz' % (name[:-1].lower(), version)] source_urls = ['ftp://ftp.ebi.ac.uk/pub/software/%s/%s' % (name.lower(), version)] sanity_check_paths = { - 'files': ['bin/clustalw2'], - 'dirs': [] - } + 'files': ['bin/clustalw2'], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb index 381ad621a9993d0e1430a6c0384997895a08b457..068dfd89ced990008cd1385315607cdc4f8d4d1f 100644 --- a/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/ClustalW2/ClustalW2-2.1-ictce-5.3.0.eb @@ -26,8 +26,8 @@ sources = ['%s-%s.tar.gz' % (name[:-1].lower(), version)] source_urls = ['ftp://ftp.ebi.ac.uk/pub/software/%s/%s' % (name.lower(), version)] sanity_check_paths = { - 'files': ['bin/clustalw2'], - 'dirs': [] - } + 'files': ['bin/clustalw2'], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/Coot/Coot-0.8.1-binary-Linux-x86_64-rhel-6-python-gtk2.eb b/easybuild/easyconfigs/c/Coot/Coot-0.8.1-binary-Linux-x86_64-rhel-6-python-gtk2.eb index 54e36207e0e7d098db57aca44aa7681d8ec1d3eb..1386d5329d13ceaafbf596142c20501f5b8a0be9 100644 --- a/easybuild/easyconfigs/c/Coot/Coot-0.8.1-binary-Linux-x86_64-rhel-6-python-gtk2.eb +++ b/easybuild/easyconfigs/c/Coot/Coot-0.8.1-binary-Linux-x86_64-rhel-6-python-gtk2.eb @@ -19,9 +19,8 @@ source_urls = ['http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/binaries/rel sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz'] sanity_check_paths = { - 'files': ["bin/coot" ], + 'files': ["bin/coot"], 'dirs': ["bin"] } moduleclass = 'bio' - diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb index 6a4d78599df6cbe7e7c78ed3c5a8a6a0044387fc..a41c761aaf8787cfb11113db3d37ed0aa21daf24 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goalf-1.1.0-no-OFED.eb @@ -21,8 +21,8 @@ source_urls = ['http://www.agroman.net/corkscrew/'] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sanity_check_paths = { - 'files': ['bin/corkscrew'], - 'dirs': [] - } + 'files': ['bin/corkscrew'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb index 7810f1ee53b8681b5930bf3b011fadee9f1b3494..8e4f18d89d9e8dd3789eed378a881b206c9e26e3 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-goolf-1.4.10.eb @@ -21,8 +21,8 @@ source_urls = ['http://www.agroman.net/corkscrew/'] toolchain = {'name': 'goolf', 'version': '1.4.10'} sanity_check_paths = { - 'files': ['bin/corkscrew'], - 'dirs': [] - } + 'files': ['bin/corkscrew'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb index 3d22de6dc88436a9416b7520561eab60701f5af1..ebeb826b66cf8c176842c1649b6045a624edd871 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-4.0.6.eb @@ -21,8 +21,8 @@ source_urls = ['http://www.agroman.net/corkscrew/'] toolchain = {'version': '4.0.6', 'name': 'ictce'} sanity_check_paths = { - 'files': ['bin/corkscrew'], - 'dirs': [] - } + 'files': ['bin/corkscrew'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb index 5f4aa901ed7f2eb5f76c0f3f09aa51706e0571f4..0afa91c77f6cd4a8591732f73a97fcdebb733879 100644 --- a/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/Corkscrew/Corkscrew-2.0-ictce-5.3.0.eb @@ -22,8 +22,8 @@ source_urls = ['http://www.agroman.net/corkscrew/'] toolchain = {'name': 'ictce', 'version': '5.3.0'} sanity_check_paths = { - 'files': ['bin/corkscrew'], - 'dirs': [] - } + 'files': ['bin/corkscrew'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/CppUnit/CppUnit-1.12.1-intel-2015b.eb b/easybuild/easyconfigs/c/CppUnit/CppUnit-1.12.1-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..1039b8eda37a1874b2b261de00bd66a23b734ea2 --- /dev/null +++ b/easybuild/easyconfigs/c/CppUnit/CppUnit-1.12.1-intel-2015b.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'CppUnit' +version = '1.12.1' + +homepage = 'http://sourceforge.net/projects/cppunit/' +description = """CppUnit is the C++ port of the famous JUnit framework for unit testing.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['lib/libcppunit.a', 'lib/libcppunit.%s' % SHLIB_EXT, 'lib/pkgconfig/cppunit.pc'], + 'dirs': ['bin', 'include/cppunit', 'share'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-2015.06-XC.eb b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-2015.06-XC.eb new file mode 100644 index 0000000000000000000000000000000000000000..bf917722672ccce2d9d135cbbe4bd0c7ca0ed634 --- /dev/null +++ b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-2015.06-XC.eb @@ -0,0 +1,19 @@ +easyblock = 'CrayToolchain' + +name = 'CrayCCE' +version = '2015.06-XC' + +homepage = 'http://docs.cray.com/books/S-9407-1511' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-cray module (PE release: November 2015).\n""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + # PrgEnv version is not pinned, as Cray recommends to use the latest (default) version + ('PrgEnv-cray', EXTERNAL_MODULE), + ('cce/8.3.12', EXTERNAL_MODULE), + ('cray-libsci/13.0.4', EXTERNAL_MODULE), + ('cray-mpich/7.2.2', EXTERNAL_MODULE), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-2015.11-XC.eb b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-2015.11-XC.eb new file mode 100644 index 0000000000000000000000000000000000000000..dbf091ccf30cb7baa1015258480481e8be89e006 --- /dev/null +++ b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-2015.11-XC.eb @@ -0,0 +1,19 @@ +easyblock = 'CrayToolchain' + +name = 'CrayCCE' +version = '2015.11-XC' + +homepage = 'http://docs.cray.com/books/S-9407-1511' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-cray module (PE release: November 2015).\n""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + # PrgEnv version is not pinned, as Cray recommends to use the latest (default) version + ('PrgEnv-cray', EXTERNAL_MODULE), + ('cce/8.4.1', EXTERNAL_MODULE), + ('cray-libsci/13.2.0', EXTERNAL_MODULE), + ('cray-mpich/7.2.6', EXTERNAL_MODULE), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb deleted file mode 100644 index 766d96d7565ce5fcec75e2965575dfafed7bb7e7..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.1.29.eb +++ /dev/null @@ -1,16 +0,0 @@ -easyblock = 'Toolchain' - -name = 'CrayCCE' -version = '5.1.29' - -homepage = '(none)' -description = """Toolchain using Cray compiler wrapper, using PrgEnv-cray module.""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -dependencies = [ - ('PrgEnv-cray/' + version, EXTERNAL_MODULE), # also loads cray-libsci - ('fftw/3.3.4.0', EXTERNAL_MODULE), -] - -moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb deleted file mode 100644 index 7a2e621e2440b14e31b9813b195d8af0b624ae68..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.25.eb +++ /dev/null @@ -1,16 +0,0 @@ -easyblock = 'Toolchain' - -name = 'CrayCCE' -version = '5.2.25' - -homepage = '(none)' -description = """Toolchain using Cray compiler wrapper, using PrgEnv-cray module.""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -dependencies = [ - ('PrgEnv-cray/' + version, EXTERNAL_MODULE), # also loads cray-libsci - ('fftw/3.3.4.2', EXTERNAL_MODULE), -] - -moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.40.eb b/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.40.eb deleted file mode 100644 index b31f4b3a23e21c3914b7591f0410fa61abac45bd..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/c/CrayCCE/CrayCCE-5.2.40.eb +++ /dev/null @@ -1,16 +0,0 @@ -easyblock = 'Toolchain' - -name = 'CrayCCE' -version = '5.2.40' - -homepage = '(none)' -description = """Toolchain using Cray compiler wrapper, using PrgEnv-cray module.""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -dependencies = [ - ('PrgEnv-cray/' + version, EXTERNAL_MODULE), # also loads cray-libsci - ('fftw/3.3.4.2', EXTERNAL_MODULE), -] - -moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-2015.06-XC.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-2015.06-XC.eb new file mode 100644 index 0000000000000000000000000000000000000000..0612076d5abe2a38fe4bced37ef267d5cf334783 --- /dev/null +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-2015.06-XC.eb @@ -0,0 +1,19 @@ +easyblock = 'CrayToolchain' + +name = 'CrayGNU' +version = '2015.06-XC' + +homepage = 'http://docs.cray.com/books/S-9407-1506' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-gnu module (PE release: June 2015).\n""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + # PrgEnv version is not pinned, as Cray recommends to use the latest (default) version + ('PrgEnv-gnu', EXTERNAL_MODULE), + ('gcc/4.8.2', EXTERNAL_MODULE), + ('cray-libsci/13.0.4', EXTERNAL_MODULE), + ('cray-mpich/7.2.2', EXTERNAL_MODULE), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-2015.11-XC.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-2015.11-XC.eb new file mode 100644 index 0000000000000000000000000000000000000000..370978db7611ef668f766e23d7f9fdb961616ea3 --- /dev/null +++ b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-2015.11-XC.eb @@ -0,0 +1,19 @@ +easyblock = 'CrayToolchain' + +name = 'CrayGNU' +version = '2015.11-XC' + +homepage = 'http://docs.cray.com/books/S-9407-1511' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-gnu module (PE release: November 2015).\n""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + # PrgEnv version is not pinned, as Cray recommends to use the latest (default) version + ('PrgEnv-gnu', EXTERNAL_MODULE), + ('gcc/4.9.3', EXTERNAL_MODULE), + ('cray-libsci/13.2.0', EXTERNAL_MODULE), + ('cray-mpich/7.2.6', EXTERNAL_MODULE), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb deleted file mode 100644 index b3e7499933652aab16c7d7d2b0bf0947aca9e274..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.1.29.eb +++ /dev/null @@ -1,16 +0,0 @@ -easyblock = 'Toolchain' - -name = 'CrayGNU' -version = '5.1.29' - -homepage = '(none)' -description = """Toolchain using Cray compiler wrapper, using PrgEnv-gnu module.""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -dependencies = [ - ('PrgEnv-gnu/' + version, EXTERNAL_MODULE), # also loads cray-libsci - ('fftw/3.3.4.0', EXTERNAL_MODULE), -] - -moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb deleted file mode 100644 index 401574689493c1e220d00c29b5f73c0fceb033f3..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.25.eb +++ /dev/null @@ -1,16 +0,0 @@ -easyblock = 'Toolchain' - -name = 'CrayGNU' -version = '5.2.25' - -homepage = '(none)' -description = """Toolchain using Cray compiler wrapper, using PrgEnv-gnu module.""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -dependencies = [ - ('PrgEnv-gnu/' + version, EXTERNAL_MODULE), # also loads cray-libsci - ('fftw/3.3.4.2', EXTERNAL_MODULE), -] - -moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.40.eb b/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.40.eb deleted file mode 100644 index dbbbbbd3039785c20044889424afa06cc658db48..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/c/CrayGNU/CrayGNU-5.2.40.eb +++ /dev/null @@ -1,16 +0,0 @@ -easyblock = 'Toolchain' - -name = 'CrayGNU' -version = '5.2.40' - -homepage = '(none)' -description = """Toolchain using Cray compiler wrapper, using PrgEnv-gnu module.""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -dependencies = [ - ('PrgEnv-gnu/' + version, EXTERNAL_MODULE), # also loads cray-libsci - ('fftw/3.3.4.2', EXTERNAL_MODULE), -] - -moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-2015.06-XC.eb b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-2015.06-XC.eb new file mode 100644 index 0000000000000000000000000000000000000000..c80854490aa4b41523d97e422ecf4d51031d9dc5 --- /dev/null +++ b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-2015.06-XC.eb @@ -0,0 +1,19 @@ +easyblock = 'CrayToolchain' + +name = 'CrayIntel' +version = '2015.06-XC' + +homepage = 'http://docs.cray.com/books/S-9407-1511' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-intel module (PE release: November 2015).\n""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + # PrgEnv version is not pinned, as Cray recommends to use the latest (default) version + ('PrgEnv-intel', EXTERNAL_MODULE), + ('intel/15.0.1.133', EXTERNAL_MODULE), + ('cray-libsci/13.0.4', EXTERNAL_MODULE), + ('cray-mpich/7.2.2', EXTERNAL_MODULE), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-2015.11-XC.eb b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-2015.11-XC.eb new file mode 100644 index 0000000000000000000000000000000000000000..cc105734db6613e99bab01a569413e9e853d629a --- /dev/null +++ b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-2015.11-XC.eb @@ -0,0 +1,19 @@ +easyblock = 'CrayToolchain' + +name = 'CrayIntel' +version = '2015.11-XC' + +homepage = 'http://docs.cray.com/books/S-9407-1511' +description = """Toolchain using Cray compiler wrapper, using PrgEnv-intel module (PE release: November 2015).\n""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +dependencies = [ + # PrgEnv version is not pinned, as Cray recommends to use the latest (default) version + ('PrgEnv-intel', EXTERNAL_MODULE), + ('intel/15.0.1.133', EXTERNAL_MODULE), + ('cray-libsci/13.2.0', EXTERNAL_MODULE), + ('cray-mpich/7.2.6', EXTERNAL_MODULE), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb deleted file mode 100644 index 7c17b80f7ec94685ed65ed4c859dfc86d59450cd..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.1.29.eb +++ /dev/null @@ -1,16 +0,0 @@ -easyblock = 'Toolchain' - -name = 'CrayIntel' -version = '5.1.29' - -homepage = '(none)' -description = """Toolchain using Cray compiler wrapper, using PrgEnv-intel module.""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -dependencies = [ - ('PrgEnv-intel/' + version, EXTERNAL_MODULE), # also loads cray-libsci - ('fftw/3.3.4.0', EXTERNAL_MODULE), -] - -moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb deleted file mode 100644 index edaac85f5493690b1950c031cfe784d266cf280e..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.25.eb +++ /dev/null @@ -1,16 +0,0 @@ -easyblock = 'Toolchain' - -name = 'CrayIntel' -version = '5.2.25' - -homepage = '(none)' -description = """Toolchain using Cray compiler wrapper, using PrgEnv-intel module.""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -dependencies = [ - ('PrgEnv-intel/' + version, EXTERNAL_MODULE), # also loads cray-libsci - ('fftw/3.3.4.2', EXTERNAL_MODULE), -] - -moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.40.eb b/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.40.eb deleted file mode 100644 index 5937accfe4587228d5357aa7e87a4555f1b707e0..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/c/CrayIntel/CrayIntel-5.2.40.eb +++ /dev/null @@ -1,16 +0,0 @@ -easyblock = 'Toolchain' - -name = 'CrayIntel' -version = '5.2.40' - -homepage = '(none)' -description = """Toolchain using Cray compiler wrapper, using PrgEnv-intel module.""" - -toolchain = {'name': 'dummy', 'version': 'dummy'} - -dependencies = [ - ('PrgEnv-intel/' + version, EXTERNAL_MODULE), # also loads cray-libsci - ('fftw/3.3.4.2', EXTERNAL_MODULE), -] - -moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb index 7159c84d00340784eaee2a3197754cf914269110..df627c9d7bd888190ba61276aa0d7232d2b44119 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.2-gompi-1.4.12-no-OFED.eb @@ -48,7 +48,8 @@ dependencies = [('Qt', '4.8.4')] configopts = "--without-java-reader" sanity_check_paths = { - 'files': ["bin/cube", ("lib/libcube4.a", "lib64/libcube4.a"), ("lib/libcube4.so", "lib64/libcube4.so")], + 'files': ["bin/cube", ("lib/libcube4.a", "lib64/libcube4.a"), + ("lib/libcube4.%s" % SHLIB_EXT, "lib64/libcube4.%s" % SHLIB_EXT)], 'dirs': ["include/cube", "include/cubew"], } diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.2.3-goolf-1.5.14.eb b/easybuild/easyconfigs/c/Cube/Cube-4.2.3-goolf-1.5.14.eb index 7bda257ed231f7102fd0103e87be93c729b84284..ad5e3d68d5de180e287c7481048196235d95a1f3 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.2.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.2.3-goolf-1.5.14.eb @@ -34,7 +34,8 @@ dependencies = [('Qt', '4.8.4')] configopts = "--without-java-reader" sanity_check_paths = { - 'files': ["bin/cube", ("lib/libcube4.a", "lib64/libcube4.a"), ("lib/libcube4.so", "lib64/libcube4.so")], + 'files': ["bin/cube", ("lib/libcube4.a", "lib64/libcube4.a"), + ("lib/libcube4.%s" % SHLIB_EXT, "lib64/libcube4.%s" % SHLIB_EXT)], 'dirs': ["include/cube", "include/cubew"], } diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.3-foss-2015a.eb b/easybuild/easyconfigs/c/Cube/Cube-4.3-foss-2015a.eb index 01eebc5f7e4e2b066bf6550339be1282e465b6a3..5763a26ed17ff70921ed057ceb280f2779684ce5 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.3-foss-2015a.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.3-foss-2015a.eb @@ -40,7 +40,8 @@ dependencies = [('Qt', '4.8.6')] configopts = "--without-java-reader" sanity_check_paths = { - 'files': ["bin/cube", ("lib/libcube4.a", "lib64/libcube4.a"), ("lib/libcube4.so", "lib64/libcube4.so")], + 'files': ["bin/cube", ("lib/libcube4.a", "lib64/libcube4.a"), + ("lib/libcube4.%s" % SHLIB_EXT, "lib64/libcube4.%s" % SHLIB_EXT)], 'dirs': ["include/cube", "include/cubew"], } diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.3-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/c/Cube/Cube-4.3-gompi-1.4.12-no-OFED.eb index 560d4ea5c5f8d46862c8791dac23921bc8db5a36..ced2f5b555ece120f4a91023aeb89d47b233e7b5 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.3-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.3-gompi-1.4.12-no-OFED.eb @@ -40,7 +40,8 @@ dependencies = [('Qt', '4.8.4')] configopts = "--without-java-reader" sanity_check_paths = { - 'files': ["bin/cube", ("lib/libcube4.a", "lib64/libcube4.a"), ("lib/libcube4.so", "lib64/libcube4.so")], + 'files': ["bin/cube", ("lib/libcube4.a", "lib64/libcube4.a"), + ("lib/libcube4.%s" % SHLIB_EXT, "lib64/libcube4.%s" % SHLIB_EXT)], 'dirs': ["include/cube", "include/cubew"], } diff --git a/easybuild/easyconfigs/c/Cube/Cube-4.3.2-foss-2015a.eb b/easybuild/easyconfigs/c/Cube/Cube-4.3.2-foss-2015a.eb index b12da485bc27115bfdf88a5ff755a1ec5abae1e0..c274b99b8c0149424a64fe7b4b6b293fb191ad3e 100644 --- a/easybuild/easyconfigs/c/Cube/Cube-4.3.2-foss-2015a.eb +++ b/easybuild/easyconfigs/c/Cube/Cube-4.3.2-foss-2015a.eb @@ -34,7 +34,8 @@ checksums = [ dependencies = [('Qt', '4.8.6')] sanity_check_paths = { - 'files': ["bin/cube", ("lib/libcube4.a", "lib64/libcube4.a"), ("lib/libcube4.so", "lib64/libcube4.so")], + 'files': ["bin/cube", ("lib/libcube4.a", "lib64/libcube4.a"), + ("lib/libcube4.%s" % SHLIB_EXT, "lib64/libcube4.%s" % SHLIB_EXT)], 'dirs': ["include/cube", "include/cubew"], } diff --git a/easybuild/easyconfigs/c/Cuby/Cuby-4-intel-2014b.eb b/easybuild/easyconfigs/c/Cuby/Cuby-4-intel-2014b.eb index fee6df968e2f5d81b1c7c818d8e1531d47af4ddd..f49b28d34f0378a131aefe67b118e7e7fcd0bf87 100644 --- a/easybuild/easyconfigs/c/Cuby/Cuby-4-intel-2014b.eb +++ b/easybuild/easyconfigs/c/Cuby/Cuby-4-intel-2014b.eb @@ -14,13 +14,13 @@ description = """Cuby is a computational chemistry framework written in ruby. toolchain = {'name': 'intel', 'version': '2014b'} -#Source can be obtained via http://cuby.molecular.cz/?page=Downloads +# Source can be obtained via http://cuby.molecular.cz/?page=Downloads sources = ['cuby4.tgz'] dependencies = [('Ruby', '2.1.5')] sanity_check_paths = { - 'files': ['cuby4%s' % x for x in ['', '.rb' ]], + 'files': ['cuby4%s' % x for x in ['', '.rb']], 'dirs': ['classes'], } diff --git a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-1.3.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-1.3.0-goolf-1.4.10.eb index 95405d7ce3a3d4b8d19b2ba14805dba3fbecbab0..501824903b421ad611701a06a6531280b6c7dfe4 100644 --- a/easybuild/easyconfigs/c/Cufflinks/Cufflinks-1.3.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/Cufflinks/Cufflinks-1.3.0-goolf-1.4.10.eb @@ -11,7 +11,7 @@ ## name = 'Cufflinks' -version = "1.3.0" +version = "1.3.0" homepage = 'http://cole-trapnell-lab.github.io/cufflinks/' description = """Transcript assembly, differential expression, and differential regulation for RNA-Seq""" @@ -30,7 +30,7 @@ dependencies = [ ] patches = [ - 'Cufflinks_GCC-4.7.patch', + 'Cufflinks_GCC-4.7.patch', 'cufflinks-1.x-ldflags.patch' ] diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.22-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/c/Cython/Cython-0.22-goolf-1.4.10-Python-2.7.3.eb index 5b829d6a73d164579c66f55718c674d93f99d091..1a87b1c99cc3d154d19ba8e26dae0b4b83704562 100644 --- a/easybuild/easyconfigs/c/Cython/Cython-0.22-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/c/Cython/Cython-0.22-goolf-1.4.10-Python-2.7.3.eb @@ -21,8 +21,8 @@ cythonlibdir = 'lib/python' + pyshortver + '/site-packages/Cython-%(version)s-py dependencies = [(python, pythonver)] sanity_check_paths = { - 'files': ['bin/cygdb', 'bin/cython', '%s/%%(namelower)s.py' % cythonlibdir], - 'dirs': ['%s/%%(name)s' % cythonlibdir], + 'files': ['bin/cygdb', 'bin/cython', '%s/%%(namelower)s.py' % cythonlibdir], + 'dirs': ['%s/%%(name)s' % cythonlibdir], } moduleclass = 'lang' diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.23.4-gimkl-2.11.5-Python-2.7.10.eb b/easybuild/easyconfigs/c/Cython/Cython-0.23.4-gimkl-2.11.5-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..426fedf887289d59bfe82e89e8f88134eb524dcd --- /dev/null +++ b/easybuild/easyconfigs/c/Cython/Cython-0.23.4-gimkl-2.11.5-Python-2.7.10.eb @@ -0,0 +1,24 @@ +easyblock = 'PythonPackage' + +name = 'Cython' +version = '0.23.4' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://pypi.python.org/pypi/Cython/' +description = """The Cython language makes writing C extensions for the Python language as easy as Python itself. +Cython is a source code translator based on the well-known Pyrex, but supports more cutting edge functionality and optimizations.""" + +toolchain = {'name': 'gimkl', 'version': '2.11.5'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('Python', '2.7.10')] + +cythonlibdir = 'lib/python%(pyshortver)s/site-packages/Cython-%(version)s-py%(pyshortver)s-linux-x86_64.egg' +sanity_check_paths = { + 'files': ['bin/cygdb', 'bin/cython', '%s/%%(namelower)s.py' % cythonlibdir], + 'dirs': [cythonlibdir + '/%(name)s'] +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goalf-1.1.0-no-OFED.eb index d19a93b8f72527079cc26dad8b5d6d014fdb8f88..ac4a33148af36b98f1a27fa8c7316c6c5264fbc4 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goalf-1.1.0-no-OFED.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goolf-1.4.10.eb index 308d2908fddce51e6f02483ca4e95d4ffcc0d027..c54c318c31dc79ae47b4ddf0bafa6d8039419a47 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-goolf-1.4.10.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-3.2.2.u3.eb index 08677ae0d02b6c473bd06315a5b4ce028f5810cd..ac0452b2e2e50ecc9962903570bee550b02bd9f4 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-3.2.2.u3.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-4.1.13.eb b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-4.1.13.eb index 22ed00385f32287c7eab50b12fd3639154d6ea5b..ae3721cd9eef93517c8a7db0aa6e0068fddbfa48 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-4.1.13.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ["bin/curl", "lib/libcurl.a", "lib/libcurl.so"], + 'files': ["bin/curl", "lib/libcurl.a", "lib/libcurl.%s" % SHLIB_EXT], 'dirs': ["lib/pkgconfig"], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-5.3.0.eb index f0fe3d92ae56861ddc3758693c80ea8642dcff84..c76a4c33d25845657cd00216f3d84779adbd21ab 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.27.0-ictce-5.3.0.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ["bin/curl", "lib/libcurl.a", "lib/libcurl.so"], + 'files': ["bin/curl", "lib/libcurl.a", "lib/libcurl.%s" % SHLIB_EXT], 'dirs': ["lib/pkgconfig"], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-4.1.13.eb b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-4.1.13.eb index aa170c9bf2fc00f22477a2602141fea0f956ed77..b12d1f0079eafe5ea7296393de579c1785a377fa 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-4.1.13.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-5.3.0.eb index 2cbb5547123128d12b5b4b4b9c0fa8948ce89ef8..74e6839e575b6e87ed2310650fdf38a1808a661e 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-ictce-5.3.0.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-iqacml-3.7.3.eb b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-iqacml-3.7.3.eb index 549dfa692ae5583b8d81f8415cdde8ba76d6b577..09cdce4817dbb7c90d47610d879c5a34fdfc157c 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.28.1-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.28.1-iqacml-3.7.3.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmpolf-1.1.6.eb index 4d7a07a71f59e9e4fae7075af2178c435d98d424..771aeabd5efa5ff833b5d45599aa8056be9b19c9 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmpolf-1.1.6.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.1.12rc1.eb index d9c35ea662745f61f492b0a289a5d183e3b66f3b..698e03bfee80c2566ba3d7846f2475150fffdedb 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.1.12rc1.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.2.7.eb index b5148412f3b53d3106326911de7ee78ea6641f44..0abe7ca465e4cefe8c0996d947632ea927286a6c 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgmvolf-1.2.7.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgoolf-1.1.7.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgoolf-1.1.7.eb index 5062e4abe854fceb42a816b210c2f320a58e3970..79f8d750265867c3154ae612c2577c0c1e9fe0cd 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-cgoolf-1.1.7.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12.eb index 63311d78498ca78f8ae28784bb01748434052b60..8462cbf28ed7dce6951f4052ab6c650d3bb9d294 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12rc1.eb index 070c2757094ad12232722484e841971a4b104fda..223f2b4428a099232bcf2e112a8c5e2dde90f861 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-gmvolf-1.7.12rc1.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-goolf-1.4.10.eb index cb387db31b0a6c3285c234e3d82c1361c5044685..307fbc0b46a1eda60f9b3ba61f93523a01162451 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.29.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.29.0-goolf-1.4.10.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.33.0-GCC-4.8.2.eb b/easybuild/easyconfigs/c/cURL/cURL-7.33.0-GCC-4.8.2.eb index 698a9cde210943ba9646fcb335f7d5d8b84e6220..3a95cb2ff70834a0adddf606da7d8ad3eefb7b94 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.33.0-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.33.0-GCC-4.8.2.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.33.0-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.33.0-ictce-5.3.0.eb index ce886810a7e9fbd091cefc46d564fdeb164716b7..237b0c17fd5261c97c580e3e1ddb22500d0dda4e 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.33.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.33.0-ictce-5.3.0.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.34.0-GCC-4.8.2.eb b/easybuild/easyconfigs/c/cURL/cURL-7.34.0-GCC-4.8.2.eb index 34d5cc05141dbb046d666d269b76e5621138b1d1..9835e5582ae1419cc9688040c941cc674124e057 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.34.0-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.34.0-GCC-4.8.2.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.34.0-ictce-5.4.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.34.0-ictce-5.4.0.eb index 5de32247736386b521bd7c396f1fb2dcbf0461de..b4f8554c2a976bca29c0a097bded50a8caf5b840 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.34.0-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.34.0-ictce-5.4.0.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.34.0-ictce-5.5.0.eb b/easybuild/easyconfigs/c/cURL/cURL-7.34.0-ictce-5.5.0.eb index c2ed6dbc333839dc41a497caeee6f446a6d76a95..5e5a9834c565449563d4124c5a75d37e86ab93ae 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.34.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.34.0-ictce-5.5.0.eb @@ -21,7 +21,7 @@ dependencies = [('OpenSSL', '1.0.1f')] configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.37.1-foss-2014b.eb b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-foss-2014b.eb index 00fec4f4d114791d69d862e922f383318da66298..8b024b363bd3a490de661270d6673c5ed34a5bec 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.37.1-foss-2014b.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-foss-2014b.eb @@ -16,11 +16,11 @@ toolchain = {'name': 'foss', 'version': '2014b'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] -#dependencies = [('OpenSSL', '1.0.1i')] # OS dependency should be preferred for security reasons +# dependencies = [('OpenSSL', '1.0.1i')] # OS dependency should be preferred for security reasons osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.37.1-foss-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-foss-2015a.eb index 0ba45ba9e526d5225207c829ef7370ea107cc2fe..6036dce5c2ecfc1cec9d0559c1f3c068df8e59c5 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.37.1-foss-2015a.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-foss-2015a.eb @@ -16,11 +16,11 @@ toolchain = {'name': 'foss', 'version': '2015a'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] -#dependencies = [('OpenSSL', '1.0.1i')] # OS dependency should be preferred for security reasons +# dependencies = [('OpenSSL', '1.0.1i')] # OS dependency should be preferred for security reasons osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2014b.eb b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2014b.eb index 90466f7075df483df658fa90d88b9e1d34914b63..196d06a19d1c29f8e2976d91c2da93b454e4987c 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2014b.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2014b.eb @@ -16,11 +16,11 @@ toolchain = {'name': 'intel', 'version': '2014b'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] -#dependencies = [('OpenSSL', '1.0.1i')] # OS dependency should be preferred for security reasons +# dependencies = [('OpenSSL', '1.0.1i')] # OS dependency should be preferred for security reasons osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2015a.eb index 82fe8da72af928a5ea2e7574b4e24a24ce9ee49e..119999d59e9c7cf04380abe386f758d20cc66df6 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2015a.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.37.1-intel-2015a.eb @@ -16,11 +16,11 @@ toolchain = {'name': 'intel', 'version': '2015a'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://curl.haxx.se/download/'] -#dependencies = [('OpenSSL', '1.0.1i')] # OS dependency should be preferred for security reasons +# dependencies = [('OpenSSL', '1.0.1i')] # OS dependency should be preferred for security reasons osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb index c62cc4830742b987d0ff57af5dd2b9f3f0f6a002..ecb2365eff6faa778b4ad5174403d8b37e386d51 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-GCC-4.9.2.eb @@ -23,7 +23,7 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-foss-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-foss-2015a.eb index f28780066aad21fca969d09fe9e94a0f631b10f0..56b0b57ed69fcb1716287f30d5ffffd2162b6500 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-foss-2015a.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-foss-2015a.eb @@ -19,7 +19,7 @@ source_urls = ['http://curl.haxx.se/download/'] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb index c9c8c7db481c4902ec5145fceae3635830c250b5..456fa99decd742c6507135d922079e40a8dc5e97 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.40.0-intel-2015a.eb @@ -23,7 +23,7 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.41.0-intel-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.41.0-intel-2015a.eb index 4e2d371a7115bb7b09002e94202bb5e4b25b5d83..6b26369841e2b739f8e0c68fad80b9f4d1f7be03 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.41.0-intel-2015a.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.41.0-intel-2015a.eb @@ -22,7 +22,7 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] # configopts = "--with-ssl=$EBROOTOPENSSL" sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.43.0-foss-2015b.eb b/easybuild/easyconfigs/c/cURL/cURL-7.43.0-foss-2015b.eb index 00dbb79c54a156842fd56050e9f241b6149484ca..8268a960ae5c5fb103092f0e85b2c1e547d4ac11 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.43.0-foss-2015b.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.43.0-foss-2015b.eb @@ -24,7 +24,7 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.43.0-goolf-1.7.20.eb b/easybuild/easyconfigs/c/cURL/cURL-7.43.0-goolf-1.7.20.eb index f234e4353beecca8317a4b449ac9acf73058faa0..4d9fde4e6a17f274c599c895e208c89e25bab3dd 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.43.0-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.43.0-goolf-1.7.20.eb @@ -24,7 +24,7 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.43.0-intel-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.43.0-intel-2015a.eb index 2dbc140a53cfcaf4bd3a95d2086a8db91ac8c739..e923765cebfe43d8d6ad75ea611ca85a772e6508 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.43.0-intel-2015a.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.43.0-intel-2015a.eb @@ -24,7 +24,7 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.43.0-intel-2015b.eb b/easybuild/easyconfigs/c/cURL/cURL-7.43.0-intel-2015b.eb index 853014d95e13db0bbb18c3aa49ef28d86eae9bf4..8f64671269f40f75b9b4b6601502fb4c3c4cb954 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.43.0-intel-2015b.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.43.0-intel-2015b.eb @@ -24,7 +24,7 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.44.0-foss-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.44.0-foss-2015a.eb index 19e23c5058fef104d68809ba6b6bd80c6a7086ee..494501aa00819a05a4bef2fe6a92bb0a1f5ed2a9 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.44.0-foss-2015a.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.44.0-foss-2015a.eb @@ -24,7 +24,7 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.44.0-goolf-1.7.20.eb b/easybuild/easyconfigs/c/cURL/cURL-7.44.0-goolf-1.7.20.eb index 22021b62b570cbc306a2197f8fb73ee55c1806ff..ea4746a629df138dd5482c9a027f46d6a2bee875 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.44.0-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.44.0-goolf-1.7.20.eb @@ -24,7 +24,7 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.44.0-intel-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.44.0-intel-2015a.eb index 4957904abe55186754cbeea4423fe5d53ece532b..07fc16413e70c855180130fef7f9a53aef8ff313 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.44.0-intel-2015a.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.44.0-intel-2015a.eb @@ -24,7 +24,7 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.45.0-foss-2015b.eb b/easybuild/easyconfigs/c/cURL/cURL-7.45.0-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..dad17a39447434dfbaaebda584f4d14a1305e523 --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.45.0-foss-2015b.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.45.0' + +homepage = 'http://curl.haxx.se' +description = """libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, + POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports + SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, + proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, + Kerberos), file transfer resume, http proxy tunneling and more.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://curl.haxx.se/download/'] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# dependencies = [('OpenSSL', '1.0.1p')] +# configopts = "--with-ssl=$EBROOTOPENSSL" + +modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.45.0-intel-2015b.eb b/easybuild/easyconfigs/c/cURL/cURL-7.45.0-intel-2015b.eb index cac9b22fc9dec8f3d933d3919a1765ec39f7c4dd..e8f4cf17fa59cf960e1f44616937cbb19fb3704e 100644 --- a/easybuild/easyconfigs/c/cURL/cURL-7.45.0-intel-2015b.eb +++ b/easybuild/easyconfigs/c/cURL/cURL-7.45.0-intel-2015b.eb @@ -24,7 +24,7 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} sanity_check_paths = { - 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.so'], + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.46.0-foss-2015a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.46.0-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..db4a8f582604258dd25efcefba409d63e8154be8 --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.46.0-foss-2015a.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.46.0' + +homepage = 'http://curl.haxx.se' +description = """libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, + POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports + SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, + proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, + Kerberos), file transfer resume, http proxy tunneling and more.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://curl.haxx.se/download/'] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# dependencies = [('OpenSSL', '1.0.1p')] +# configopts = "--with-ssl=$EBROOTOPENSSL" + +modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/cURL/cURL-7.47.0-intel-2016a.eb b/easybuild/easyconfigs/c/cURL/cURL-7.47.0-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..f21ebdf8a9af01c7497f72b8ea8abfbb3afce2ba --- /dev/null +++ b/easybuild/easyconfigs/c/cURL/cURL-7.47.0-intel-2016a.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'cURL' +version = '7.47.0' + +homepage = 'http://curl.haxx.se' +description = """libcurl is a free and easy-to-use client-side URL transfer library, + supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, + POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports + SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, + proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, + Kerberos), file transfer resume, http proxy tunneling and more.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://curl.haxx.se/download/'] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# dependencies = [('OpenSSL', '1.0.1s')] +# configopts = "--with-ssl=$EBROOTOPENSSL" + +modextravars = {'CURL_INCLUDES': '%(installdir)s/include'} + +sanity_check_paths = { + 'files': ['bin/curl', 'lib/libcurl.a', 'lib/libcurl.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/cairo/cairo-1.14.6-intel-2016a.eb b/easybuild/easyconfigs/c/cairo/cairo-1.14.6-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..0a62de36aa1beeb743bb0efd624510970f9ace5f --- /dev/null +++ b/easybuild/easyconfigs/c/cairo/cairo-1.14.6-intel-2016a.eb @@ -0,0 +1,45 @@ +easyblock = 'ConfigureMake' + +name = 'cairo' +version = '1.14.6' + +homepage = 'http://cairographics.org' +description = """Cairo is a 2D graphics library with support for multiple output devices. + Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, + PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['http://cairographics.org/releases/'] +sources = [SOURCE_TAR_XZ] + +glibver = '2.47.5' + +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libpng', '1.6.21'), + ('freetype', '2.6.2'), + ('pixman', '0.34.0'), + ('fontconfig', '2.11.94'), + ('expat', '2.1.0'), + ('GLib', glibver), +] + +# disable symbol lookup, which requires -lbfd, to avoid link issues with (non-PIC) libiberty.a provided by GCC +configopts = "--enable-symbol-lookup=no --enable-gobject=yes --enable-svg=yes --enable-tee=yes " + +# workaround for "hidden symbol .* in .* is referenced by DSO" and "ld: final link failed: Bad value" +buildopts = 'LD="$CC" LDFLAGS="$LDFLAGS -shared-intel"' + +sanity_check_paths = { + 'files': ['bin/cairo-trace', 'lib/cairo/libcairo-trace.so', 'lib/cairo/libcairo-trace.a', + 'lib/libcairo.a', 'lib/libcairo-gobject.a', 'lib/libcairo-script-interpreter.a', + 'lib/libcairo-gobject.so', 'lib/libcairo-script-interpreter.so', 'lib/libcairo.so'] + + ['include/cairo/cairo%s.h' % x for x in ['', '-deprecated', '-features', '-ft', '-gobject', '-pdf', '-ps', + '-script', '-script-interpreter', '-svg', '-version', '-xcb', + '-xlib', '-xlib-xrender']], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/c/cairomm/cairomm-1.10.0-intel-2015a.eb b/easybuild/easyconfigs/c/cairomm/cairomm-1.10.0-intel-2015a.eb index 5aa8ded5d683cedf7e9f7f35b12bc63892986735..c3d9dd1f282707f849f8cca3d3f34cc84d308576 100644 --- a/easybuild/easyconfigs/c/cairomm/cairomm-1.10.0-intel-2015a.eb +++ b/easybuild/easyconfigs/c/cairomm/cairomm-1.10.0-intel-2015a.eb @@ -19,7 +19,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libcairomm-1.0.so'], + 'files': ['lib/libcairomm-1.0.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/c/cairomm/cairomm-1.10.0-intel-2015b.eb b/easybuild/easyconfigs/c/cairomm/cairomm-1.10.0-intel-2015b.eb index 371e1b55e1a9f5c5ffbf5171056c40d2f96b1cdb..8cd26b8a00bf2146394c75fec2815572060a67fa 100644 --- a/easybuild/easyconfigs/c/cairomm/cairomm-1.10.0-intel-2015b.eb +++ b/easybuild/easyconfigs/c/cairomm/cairomm-1.10.0-intel-2015b.eb @@ -19,7 +19,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libcairomm-1.0.so'], + 'files': ['lib/libcairomm-1.0.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb index 48fcc47836307819f59e375ff2e71f45514e236c..bbabdb92a5bb91fc7c06ccb75100dcfcc9e3996b 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goalf-1.1.0-no-OFED.eb @@ -21,8 +21,8 @@ source_urls = ['http://samba.org/ftp/ccache/'] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sanity_check_paths = { - 'files': ['bin/ccache'], - 'dirs': [] - } + 'files': ['bin/ccache'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb index b642a5d551a80e47129975d862504ff486919a4d..3bf08594dade5bb208ad543a0d55ced42ceb0c79 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-goolf-1.4.10.eb @@ -21,8 +21,8 @@ source_urls = ['http://samba.org/ftp/ccache/'] toolchain = {'name': 'goolf', 'version': '1.4.10'} sanity_check_paths = { - 'files': ['bin/ccache'], - 'dirs': [] - } + 'files': ['bin/ccache'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb index 4137d5afc828ca0371083923fae2844f9d66bf0f..3011b90d1708fada7ac55372d4525da768a8ad60 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-4.0.6.eb @@ -21,9 +21,8 @@ source_urls = ['http://samba.org/ftp/ccache/'] toolchain = {'version': '4.0.6', 'name': 'ictce'} sanity_check_paths = { - 'files': ['bin/ccache'], - 'dirs': [] - } + 'files': ['bin/ccache'], + 'dirs': [] +} moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb index b15c9ceaf915a0de1b123f9d4a2e10c23530b414..84c3e7baf8976c4a1ac0b268c5cb6cd21ed0a6ef 100644 --- a/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/ccache/ccache-3.1.9-ictce-5.3.0.eb @@ -22,9 +22,8 @@ source_urls = ['http://samba.org/ftp/ccache/'] toolchain = {'name': 'ictce', 'version': '5.3.0'} sanity_check_paths = { - 'files': ['bin/ccache'], - 'dirs': [] - } + 'files': ['bin/ccache'], + 'dirs': [] +} moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb index 315f43e190d51684e41fe86c15bd74ad022fd93e..98800f3677094c16f98f18e446dc53b907ea38c1 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-goalf-1.1.0-no-OFED.eb @@ -22,8 +22,8 @@ source_urls = [GNU_SOURCE] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sanity_check_paths = { - 'files': ['bin/cflow'], - 'dirs': [] - } + 'files': ['bin/cflow'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb index 501b5edd24789f596e5d4c2cb7fdc2987631711a..bb9da36f809070bcfb07a563009a7f7944a35c4b 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-goolf-1.4.10.eb @@ -22,8 +22,8 @@ source_urls = [GNU_SOURCE] toolchain = {'name': 'goolf', 'version': '1.4.10'} sanity_check_paths = { - 'files': ['bin/cflow'], - 'dirs': [] - } + 'files': ['bin/cflow'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb index 7c2775cbce86e2ce85d10420f9d573082f5a8aeb..a3e495b0c6915ce9bf977b67961c4f5cd57438fc 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-4.0.6.eb @@ -22,9 +22,8 @@ source_urls = [GNU_SOURCE] toolchain = {'version': '4.0.6', 'name': 'ictce'} sanity_check_paths = { - 'files': ['bin/cflow'], - 'dirs': [] - } + 'files': ['bin/cflow'], + 'dirs': [] +} moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb index 848eb6e89975af24c6c20c5941c7015a76ca2802..107d08647f5b251b367e43160f1efbaaadeb4867 100644 --- a/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cflow/cflow-1.4-ictce-5.3.0.eb @@ -23,9 +23,8 @@ source_urls = [GNU_SOURCE] toolchain = {'name': 'ictce', 'version': '5.3.0'} sanity_check_paths = { - 'files': ['bin/cflow'], - 'dirs': [] - } + 'files': ['bin/cflow'], + 'dirs': [] +} moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb index 5a1aea2fb7d2bc3d079c3288e4f3284b72ea0aa7..2112acc09695b87bd93eb95920a91ec27d73929b 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goalf-1.1.0-no-OFED.eb @@ -21,13 +21,13 @@ source_urls = ['http://sourceforge.net/projects/cgdb/files', 'download'] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} dependencies = [ - ('ncurses', '5.9'), - ('libreadline', '6.2') - ] + ('ncurses', '5.9'), + ('libreadline', '6.2') +] sanity_check_paths = { - 'files': ['bin/cgdb'], - 'dirs': [] - } + 'files': ['bin/cgdb'], + 'dirs': [] +} moduleclass = 'debugger' diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb index 5efc1c2d3ca161203507eaa94d5c65e36d92405a..9684225cb765a4dfd9bc485f53e3c31049c7f0bb 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-goolf-1.4.10.eb @@ -21,13 +21,13 @@ source_urls = ['http://sourceforge.net/projects/cgdb/files', 'download'] toolchain = {'name': 'goolf', 'version': '1.4.10'} dependencies = [ - ('ncurses', '5.9'), - ('libreadline', '6.2') - ] + ('ncurses', '5.9'), + ('libreadline', '6.2') +] sanity_check_paths = { - 'files': ['bin/cgdb'], - 'dirs': [] - } + 'files': ['bin/cgdb'], + 'dirs': [] +} moduleclass = 'debugger' diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb index b3656ba859dd8a782950c67294bd82555b20c297..3cff32f247c9e6c47a91f4ab4fd3131907bcbd1a 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-4.0.6.eb @@ -21,13 +21,13 @@ source_urls = ['http://sourceforge.net/projects/cgdb/files', 'download'] toolchain = {'version': '4.0.6', 'name': 'ictce'} dependencies = [ - ('ncurses', '5.9'), - ('libreadline', '6.2') - ] + ('ncurses', '5.9'), + ('libreadline', '6.2') +] sanity_check_paths = { - 'files': ['bin/cgdb'], - 'dirs': [] - } + 'files': ['bin/cgdb'], + 'dirs': [] +} moduleclass = 'debugger' diff --git a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb index c3ce823fd97275f17cbd43765be4cfa9dc7b904b..eb6eb8ffbf17dd8df2f6ca1ec83fa5598b0facc5 100644 --- a/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/c/cgdb/cgdb-0.6.5-ictce-5.3.0.eb @@ -22,13 +22,13 @@ source_urls = ['http://sourceforge.net/projects/cgdb/files', 'download'] toolchain = {'name': 'ictce', 'version': '5.3.0'} dependencies = [ - ('ncurses', '5.9'), - ('libreadline', '6.2') - ] + ('ncurses', '5.9'), + ('libreadline', '6.2') +] sanity_check_paths = { - 'files': ['bin/cgdb'], - 'dirs': [] - } + 'files': ['bin/cgdb'], + 'dirs': [] +} moduleclass = 'debugger' diff --git a/easybuild/easyconfigs/c/cramtools/cramtools-2.0-Java-1.7.0_80.eb b/easybuild/easyconfigs/c/cramtools/cramtools-2.0-Java-1.7.0_80.eb index 928b078aac4b112449fc8c1ceaa5be6863568b3d..d2027312f5b2b01d8454d75ed22887c6272eb205 100644 --- a/easybuild/easyconfigs/c/cramtools/cramtools-2.0-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/c/cramtools/cramtools-2.0-Java-1.7.0_80.eb @@ -9,7 +9,7 @@ read data. Although this is intended as a stable version the code is released as early access. Parts of the CRAMTools are experimental and may not be supported in the future.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['v%(version)s.tar.gz'] source_urls = ['https://github.com/enasequence/%(name)s/archive/'] diff --git a/easybuild/easyconfigs/c/ctffind/ctffind-4.0.17-intel-2015b.eb b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.17-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..c378da306a5e28ede1a90393432053ef32fb3224 --- /dev/null +++ b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.17-intel-2015b.eb @@ -0,0 +1,38 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'MakeCp' + +name = 'ctffind' +version = '4.0.17' + +homepage = 'http://grigoriefflab.janelia.org/ctffind4' +description = """program for finding CTFs of electron micrographs""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'openmp': True} + +source_urls = ['http://grigoriefflab.janelia.org/sites/default/files/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('GSL', '1.16')] + +# when running ./configure in the root folder it fails. +# application doesn't provide a 'make install' +prebuildopts = 'mkdir build && cd build && ' +prebuildopts += ' ../configure --enable-static --disable-debug --enable-optimisations --enable-openmp FC=${FC} F77=${F77} && ' + +files_to_copy = [(['build/ctffind'], 'bin'), 'doc', 'scripts'] + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/ctffind'], + 'dirs': [], +} + +modloadmsg = """Define OMP_NUM_THREADS or use the command line option --omp-num-threads=N when using this application""" + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8-intel-2014b.eb b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8-intel-2014b.eb index 70b9a6c76d450314b06ba112e93c223ccedb3f0f..6af0d9536021d50f94660bdc8239e1ae869a103f 100644 --- a/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8-intel-2014b.eb +++ b/easybuild/easyconfigs/c/ctffind/ctffind-4.0.8-intel-2014b.eb @@ -1,4 +1,4 @@ -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'ctffind' version = '4.0.8' diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.3.eb index c519419dcf757ca545b6dd0b18501bb05308a8a0..d487d344f68c2418b5e6237e98eb2754e7a0fee0 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.3.eb @@ -31,7 +31,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/cutadapt','lib/python2.7/site-packages/cutadapt/calign.so',], + 'files': ['bin/cutadapt', 'lib/python2.7/site-packages/cutadapt/calign.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.5.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.5.eb index f278de669b75bbe123facd55546fdb7364b900c1..aceb217de4bbfa5d6c0c8dbdeb6f67d1f4f6bc5c 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.5.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.3-goolf-1.4.10-Python-2.7.5.eb @@ -31,7 +31,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/cutadapt','lib/python2.7/site-packages/cutadapt/calign.so',], + 'files': ['bin/cutadapt', 'lib/python2.7/site-packages/cutadapt/calign.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb index a308b2113040ca38bca418c17a7269a85b9641d2..9d2802684e4256bd65c38f334447f8330712656a 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.4.1-foss-2014b-Python-2.7.8.eb @@ -29,9 +29,8 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/cutadapt',], + 'files': ['bin/cutadapt'], 'dirs': [], } moduleclass = 'bio' - diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb index 3303167a212712132abd6fe76644e37bd751796f..edcade804404d5db7af0eb6e827e27a31a096a1d 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-foss-2014b-Python-2.7.8.eb @@ -29,9 +29,8 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/cutadapt',], + 'files': ['bin/cutadapt'], 'dirs': [], } moduleclass = 'bio' - diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-goolf-1.4.10-Python-2.7.10.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-goolf-1.4.10-Python-2.7.10.eb index 1d7c0f2ab8d3bf4b71f27c9b706800278c6d7b73..141aedc7d3d5b009aca935d9680ddb6a708ba2af 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-goolf-1.4.10-Python-2.7.10.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-goolf-1.4.10-Python-2.7.10.eb @@ -26,7 +26,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/python%s/site-packages/cutadapt/_align.so' % pyshortver], + 'files': ['lib/python%s/site-packages/cutadapt/_align.%s' % (pyshortver, SHLIB_EXT)], 'dirs': [], } diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb index dbc8a13634a2d846553c2d1832fb3e1671a92b60..c50c4a1b5f880d9d45b1dd343d2d9c8263b36b3d 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.5-intel-2014b-Python-2.7.8.eb @@ -26,7 +26,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/cutadapt','lib/python%s/site-packages/cutadapt/_align.so' % pyshortver], + 'files': ['bin/cutadapt', 'lib/python%s/site-packages/cutadapt/_align.%s' % (pyshortver, SHLIB_EXT)], 'dirs': [], } diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb index 83a8d8a50d11fa0846f0cf9ac57baa009790cdb3..6d660f5bc5759bfa8c74125df699be66f22aa5f1 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.6-foss-2014b-Python-2.7.8.eb @@ -29,9 +29,8 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/cutadapt',], + 'files': ['bin/cutadapt'], 'dirs': [], } moduleclass = 'bio' - diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb index f879b0939f257bf5e3af32327d0e82496bcb12b9..7e135e50214c14aa0f5cb77f4a8eccc7e5e019a9 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7-foss-2014b-Python-2.7.8.eb @@ -29,9 +29,8 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/cutadapt',], + 'files': ['bin/cutadapt'], 'dirs': [], } moduleclass = 'bio' - diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb index 60048badc4d91fb70bc781525ab151f81450f1bc..ccfea593725c8b24ee0f475ea82fa5ec76d0c048 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.7.1-foss-2014b-Python-2.7.8.eb @@ -29,9 +29,8 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/cutadapt',], + 'files': ['bin/cutadapt'], 'dirs': [], } moduleclass = 'bio' - diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb index a69f7bc2f85b976d02ba71f12be0640ed56d3347..8898d1ce85b464d328d07ff9e6c87d14e5ea96a0 100644 --- a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.8.1-intel-2015a-Python-2.7.9.eb @@ -29,7 +29,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/cutadapt','lib/python%s/site-packages/cutadapt/_align.so' % pyshortver], + 'files': ['bin/cutadapt', 'lib/python%s/site-packages/cutadapt/_align.%s' % (pyshortver, SHLIB_EXT)], 'dirs': [], } diff --git a/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..6c74a88bb40ae4186d0d68dfdfd4f2e443e3eb43 --- /dev/null +++ b/easybuild/easyconfigs/c/cutadapt/cutadapt-1.9.1-foss-2015b-Python-2.7.10.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics (SIB) +# Biozentrum - University of Basel +# Author: Adam Huffman +# The Francis Crick Institute + +easyblock = "PythonPackage" + +name = 'cutadapt' +version = '1.9.1' + +homepage = 'http://opensource.scilifelab.se/projects/cutadapt/' +description = """ Cutadapt finds and removes adapter sequences, primers, poly-A tails and + other types of unwanted sequence from your high-throughput sequencing reads. """ + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pyver = '2.7.10' +pyshortver = '.'.join(pyver.split('.')[:2]) + +versionsuffix = "-%s-%s" % (python, pyver) + +dependencies = [ + (python, pyver), +] + +sanity_check_paths = { + 'files': ['bin/cutadapt', 'lib/python%s/site-packages/cutadapt/_align.%s' % (pyshortver, SHLIB_EXT)], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/d/DB/DB-4.7.25-goolf-1.4.10.eb b/easybuild/easyconfigs/d/DB/DB-4.7.25-goolf-1.4.10.eb index f5b3296ba09dddbb5854d868bf698cd78c95d7ab..2da345f144297325eee56b56fd9e17c5e0931eb2 100644 --- a/easybuild/easyconfigs/d/DB/DB-4.7.25-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/DB/DB-4.7.25-goolf-1.4.10.eb @@ -11,7 +11,7 @@ source_urls = ['http://download.oracle.com/berkeley-db'] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ["include/db.h", "include/db_cxx.h", "lib/libdb.a", "lib/libdb.so"], + 'files': ["include/db.h", "include/db_cxx.h", "lib/libdb.a", "lib/libdb.%s" % SHLIB_EXT], 'dirs': ["bin"], } diff --git a/easybuild/easyconfigs/d/DB/DB-4.7.25-ictce-4.1.13.eb b/easybuild/easyconfigs/d/DB/DB-4.7.25-ictce-4.1.13.eb index 2a459174775f1b4e448f4eac3adf50a55d5aa207..c5051b60fe939ecc20e67c043da1002eea72ce6e 100644 --- a/easybuild/easyconfigs/d/DB/DB-4.7.25-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/d/DB/DB-4.7.25-ictce-4.1.13.eb @@ -11,7 +11,7 @@ source_urls = ['http://download.oracle.com/berkeley-db'] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ["include/db.h", "include/db_cxx.h", "lib/libdb.a", "lib/libdb.so"], + 'files': ["include/db.h", "include/db_cxx.h", "lib/libdb.a", "lib/libdb.%s" % SHLIB_EXT], 'dirs': ["bin"], } diff --git a/easybuild/easyconfigs/d/DB/DB-4.8.30-goolf-1.4.10.eb b/easybuild/easyconfigs/d/DB/DB-4.8.30-goolf-1.4.10.eb index bebd11184253e258be23ab7e6d84fefece08988e..f567e411fb53fa9aa8fa2956f2ab4fae4481d87e 100644 --- a/easybuild/easyconfigs/d/DB/DB-4.8.30-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/d/DB/DB-4.8.30-goolf-1.4.10.eb @@ -7,12 +7,12 @@ description = """Berkeley DB enables the development of custom data management s toolchain = {'name': 'goolf', 'version': '1.4.10'} -# download via http://www.oracle.com/technetwork/products/berkeleydb/downloads/, requires registration +source_urls = ['http://download.oracle.com/berkeley-db/'] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ["include/db.h"], - 'dirs': [], + 'files': ['include/db.h', 'include/db_cxx.h', 'lib/libdb.a', 'lib/libdb.%s' % SHLIB_EXT], + 'dirs': ['bin'], } moduleclass = 'tools' diff --git a/easybuild/easyconfigs/d/DB/DB-4.8.30-ictce-5.5.0.eb b/easybuild/easyconfigs/d/DB/DB-4.8.30-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..42d43b6f8ef532aa7d04ca9a6b539e0ebba77bb6 --- /dev/null +++ b/easybuild/easyconfigs/d/DB/DB-4.8.30-ictce-5.5.0.eb @@ -0,0 +1,18 @@ +name = 'DB' +version = '4.8.30' + +homepage = 'http://www.oracle.com/technetwork/products/berkeleydb' +description = """Berkeley DB enables the development of custom data management solutions, + without the overhead traditionally associated with such custom projects.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ['http://download.oracle.com/berkeley-db/'] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['include/db.h', 'include/db_cxx.h', 'lib/libdb.a', 'lib/libdb.%s' % SHLIB_EXT], + 'dirs': ['bin'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/d/DB/DB-4.8.30-intel-2015b.eb b/easybuild/easyconfigs/d/DB/DB-4.8.30-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..0155873f3f79eea586d99b5f429846381f0e43b3 --- /dev/null +++ b/easybuild/easyconfigs/d/DB/DB-4.8.30-intel-2015b.eb @@ -0,0 +1,18 @@ +name = 'DB' +version = '4.8.30' + +homepage = 'http://www.oracle.com/technetwork/products/berkeleydb' +description = """Berkeley DB enables the development of custom data management solutions, + without the overhead traditionally associated with such custom projects.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://download.oracle.com/berkeley-db/'] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['include/db.h', 'include/db_cxx.h', 'lib/libdb.a', 'lib/libdb.%s' % SHLIB_EXT], + 'dirs': ['bin'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/d/DB/DB-4.8.30-intel-2016a.eb b/easybuild/easyconfigs/d/DB/DB-4.8.30-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..aec133eedfd174df658564d2b00f5ffd9f1e61e3 --- /dev/null +++ b/easybuild/easyconfigs/d/DB/DB-4.8.30-intel-2016a.eb @@ -0,0 +1,18 @@ +name = 'DB' +version = '4.8.30' + +homepage = 'http://www.oracle.com/technetwork/products/berkeleydb' +description = """Berkeley DB enables the development of custom data management solutions, + without the overhead traditionally associated with such custom projects.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['http://download.oracle.com/berkeley-db/'] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['include/db.h', 'include/db_cxx.h', 'lib/libdb.a', 'lib/libdb.%s' % SHLIB_EXT], + 'dirs': ['bin'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/d/DB_File/DB_File-1.831-ictce-5.5.0-Perl-5.18.2.eb b/easybuild/easyconfigs/d/DB_File/DB_File-1.831-ictce-5.5.0-Perl-5.18.2.eb index bdcb00e69d1f7d3d754727227733019e25c1498f..babf824aa11b25b54942b0150d4403994d823dc0 100644 --- a/easybuild/easyconfigs/d/DB_File/DB_File-1.831-ictce-5.5.0-Perl-5.18.2.eb +++ b/easybuild/easyconfigs/d/DB_File/DB_File-1.831-ictce-5.5.0-Perl-5.18.2.eb @@ -2,6 +2,7 @@ easyblock = 'PerlModule' name = 'DB_File' version = '1.831' +versionsuffix = '-Perl-%(perlver)s' homepage = 'http://perldoc.perl.org/DB_File.html' description = """Perl5 access to Berkeley DB version 1.x.""" @@ -11,19 +12,13 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} source_urls = ['http://www.cpan.org/modules/by-module/DB_File/PMQS'] sources = [SOURCE_TAR_GZ] -dependencies = [('DB', '2.7.7')] - -perl = 'Perl' -perlver = '5.18.2' -versionsuffix = '-%s-%s' % (perl, perlver) - dependencies = [ - (perl, perlver), + ('Perl', '5.18.2'), + ('DB', '4.8.30'), ] -perlmajver = perlver.split('.')[0] sanity_check_paths = { - 'files': ['lib/perl%s/site_perl/%s/x86_64-linux-thread-multi/DB_File.pm' % (perlmajver, perlver)], + 'files': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/DB_File.pm'], 'dirs': [], } diff --git a/easybuild/easyconfigs/d/DB_File/DB_File-1.831-ictce-5.5.0-Perl-5.20.0.eb b/easybuild/easyconfigs/d/DB_File/DB_File-1.831-ictce-5.5.0-Perl-5.20.0.eb index 831d1e849462cc3bbfc6e0863e1192a0b1882286..2eb7bd63e2775d01397a04a660a0f71c0c9987c2 100644 --- a/easybuild/easyconfigs/d/DB_File/DB_File-1.831-ictce-5.5.0-Perl-5.20.0.eb +++ b/easybuild/easyconfigs/d/DB_File/DB_File-1.831-ictce-5.5.0-Perl-5.20.0.eb @@ -2,6 +2,7 @@ easyblock = 'PerlModule' name = 'DB_File' version = '1.831' +versionsuffix = '-Perl-%(perlver)s' homepage = 'http://perldoc.perl.org/DB_File.html' description = """Perl5 access to Berkeley DB version 1.x.""" @@ -11,19 +12,13 @@ toolchain = {'name': 'ictce', 'version': '5.5.0'} source_urls = ['http://www.cpan.org/modules/by-module/DB_File/PMQS'] sources = [SOURCE_TAR_GZ] -dependencies = [('DB', '2.7.7')] - -perl = 'Perl' -perlver = '5.20.0' -versionsuffix = '-%s-%s' % (perl, perlver) - dependencies = [ - (perl, perlver), + ('Perl', '5.20.0'), + ('DB', '4.8.30'), ] -perlmajver = perlver.split('.')[0] sanity_check_paths = { - 'files': ['lib/perl%s/site_perl/%s/x86_64-linux-thread-multi/DB_File.pm' % (perlmajver, perlver)], + 'files': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/DB_File.pm'], 'dirs': [], } diff --git a/easybuild/easyconfigs/d/DB_File/DB_File-1.831-intel-2015b-Perl-5.20.3.eb b/easybuild/easyconfigs/d/DB_File/DB_File-1.831-intel-2015b-Perl-5.20.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..7a984ebf4c031bd027d6a66dbc85d2aac530b4b1 --- /dev/null +++ b/easybuild/easyconfigs/d/DB_File/DB_File-1.831-intel-2015b-Perl-5.20.3.eb @@ -0,0 +1,25 @@ +easyblock = 'PerlModule' + +name = 'DB_File' +version = '1.831' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'http://perldoc.perl.org/DB_File.html' +description = """Perl5 access to Berkeley DB version 1.x.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://www.cpan.org/modules/by-module/DB_File/PMQS'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Perl', '5.20.3'), + ('DB', '4.8.30'), +] + +sanity_check_paths = { + 'files': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/DB_File.pm'], + 'dirs': [], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/d/DB_File/DB_File-1.835-intel-2016a-Perl-5.20.3.eb b/easybuild/easyconfigs/d/DB_File/DB_File-1.835-intel-2016a-Perl-5.20.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..c1d977b9e287294bc92e628793927ed490589a2a --- /dev/null +++ b/easybuild/easyconfigs/d/DB_File/DB_File-1.835-intel-2016a-Perl-5.20.3.eb @@ -0,0 +1,25 @@ +easyblock = 'PerlModule' + +name = 'DB_File' +version = '1.835' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'http://perldoc.perl.org/DB_File.html' +description = """Perl5 access to Berkeley DB version 1.x.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['http://www.cpan.org/modules/by-module/DB_File/PMQS'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Perl', '5.20.3'), + ('DB', '4.8.30'), +] + +sanity_check_paths = { + 'files': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/DB_File.pm'], + 'dirs': [], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/d/DISCOVARdenovo/DISCOVARdenovo-52488-foss-2015a.eb b/easybuild/easyconfigs/d/DISCOVARdenovo/DISCOVARdenovo-52488-foss-2015a.eb index 5f9ea822ee521a3cd7f95683950fdf08a2d934af..1fc6b8de7815748cecc26dbea4f915fd7397ecfd 100644 --- a/easybuild/easyconfigs/d/DISCOVARdenovo/DISCOVARdenovo-52488-foss-2015a.eb +++ b/easybuild/easyconfigs/d/DISCOVARdenovo/DISCOVARdenovo-52488-foss-2015a.eb @@ -19,7 +19,7 @@ dependencies = [ sanity_check_paths = { 'files': ["bin/AffineAlign"], - 'dirs': ["bin","share"], + 'dirs': ["bin", "share"], } moduleclass = 'bio' diff --git a/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 64119b5667b010c22d7a01d0c1ba590821d58cc4..4de16cc800d9c6bb277623c41eb3be9f3a4e9740 100644 --- a/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -18,9 +18,9 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['https://launchpad.net/%s/%s.x/%s/+download' % (name.lower(), majver, version)] patches = [ - 'wl_pkg_linkflags.patch', - 'petsc-slepc-libs.patch' - ] + 'wl_pkg_linkflags.patch', + 'petsc-slepc-libs.patch' +] builddependencies = [('CMake', '2.8.4')] @@ -29,27 +29,27 @@ python_version = '2.7.3' versionsuffix = '-%s-%s' % (python, python_version) dependencies = [ - (python, python_version), - ('Boost', '1.49.0', versionsuffix), - ('UFC', '2.0.5', versionsuffix), - ('SWIG', '2.0.4', versionsuffix), - ('FFC', '1.0.0', versionsuffix), - ('FIAT', '1.0.0', versionsuffix), - ('Instant', '1.0.0', versionsuffix), - ('Viper', '1.0.0', versionsuffix), - ('UFL', '1.0.0', versionsuffix), - ('SCOTCH', '5.1.12b_esmumps'), - ('Armadillo', '2.4.4', versionsuffix), - ('ParMETIS', '4.0.2'), - ('SuiteSparse', '3.7.0', '-withparmetis'), - ('CGAL', '4.0', versionsuffix), - ('PETSc', '3.3-p2', versionsuffix), - ('SLEPc', '3.3-p1', versionsuffix), - ('MTL4', '4.0.8878', '', True), - ('Trilinos', '10.12.2', versionsuffix), - ('Sphinx', '1.1.3', versionsuffix), - ('zlib', '1.2.7'), - ('libxml2', '2.8.0') - ] + (python, python_version), + ('Boost', '1.49.0', versionsuffix), + ('UFC', '2.0.5', versionsuffix), + ('SWIG', '2.0.4', versionsuffix), + ('FFC', '1.0.0', versionsuffix), + ('FIAT', '1.0.0', versionsuffix), + ('Instant', '1.0.0', versionsuffix), + ('Viper', '1.0.0', versionsuffix), + ('UFL', '1.0.0', versionsuffix), + ('SCOTCH', '5.1.12b_esmumps'), + ('Armadillo', '2.4.4', versionsuffix), + ('ParMETIS', '4.0.2'), + ('SuiteSparse', '3.7.0', '-withparmetis'), + ('CGAL', '4.0', versionsuffix), + ('PETSc', '3.3-p2', versionsuffix), + ('SLEPc', '3.3-p1', versionsuffix), + ('MTL4', '4.0.8878', '', True), + ('Trilinos', '10.12.2', versionsuffix), + ('Sphinx', '1.1.3', versionsuffix), + ('zlib', '1.2.7'), + ('libxml2', '2.8.0') +] moduleclass = 'math' diff --git a/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.0.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.0.0-goolf-1.4.10-Python-2.7.3.eb index dcf7a43c080e94e7791d7f69571a4b9ea4f278bd..77e43460d5c5faa51d65bb3f4caed78ecfa6125b 100644 --- a/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.0.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.0.0-goolf-1.4.10-Python-2.7.3.eb @@ -18,10 +18,10 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['https://launchpad.net/%s/%s.x/%s/+download' % (name.lower(), majver, version)] patches = [ - 'wl_pkg_linkflags.patch', - 'petsc-slepc-libs.patch', - 'DOLFIN-1.0.0_GCC-4.7.patch', - ] + 'wl_pkg_linkflags.patch', + 'petsc-slepc-libs.patch', + 'DOLFIN-1.0.0_GCC-4.7.patch', +] builddependencies = [('CMake', '2.8.4')] @@ -30,27 +30,27 @@ python_version = '2.7.3' versionsuffix = '-%s-%s' % (python, python_version) dependencies = [ - (python, python_version), - ('Boost', '1.49.0', versionsuffix), - ('UFC', '2.0.5', versionsuffix), - ('SWIG', '2.0.4', versionsuffix), - ('FFC', '1.0.0', versionsuffix), - ('FIAT', '1.0.0', versionsuffix), - ('Instant', '1.0.0', versionsuffix), - ('Viper', '1.0.0', versionsuffix), - ('UFL', '1.0.0', versionsuffix), - ('SCOTCH', '5.1.12b_esmumps'), - ('Armadillo', '2.4.4', versionsuffix), - ('ParMETIS', '4.0.2'), - ('SuiteSparse', '3.7.0', '-withparmetis'), - ('CGAL', '4.0', versionsuffix), - ('PETSc', '3.3-p2', versionsuffix), - ('SLEPc', '3.3-p1', versionsuffix), - ('MTL4', '4.0.8878', '', True), - ('Trilinos', '10.12.2', versionsuffix), - ('Sphinx', '1.1.3', versionsuffix), - ('zlib', '1.2.7'), - ('libxml2', '2.8.0') - ] + (python, python_version), + ('Boost', '1.49.0', versionsuffix), + ('UFC', '2.0.5', versionsuffix), + ('SWIG', '2.0.4', versionsuffix), + ('FFC', '1.0.0', versionsuffix), + ('FIAT', '1.0.0', versionsuffix), + ('Instant', '1.0.0', versionsuffix), + ('Viper', '1.0.0', versionsuffix), + ('UFL', '1.0.0', versionsuffix), + ('SCOTCH', '5.1.12b_esmumps'), + ('Armadillo', '2.4.4', versionsuffix), + ('ParMETIS', '4.0.2'), + ('SuiteSparse', '3.7.0', '-withparmetis'), + ('CGAL', '4.0', versionsuffix), + ('PETSc', '3.3-p2', versionsuffix), + ('SLEPc', '3.3-p1', versionsuffix), + ('MTL4', '4.0.8878', '', True), + ('Trilinos', '10.12.2', versionsuffix), + ('Sphinx', '1.1.3', versionsuffix), + ('zlib', '1.2.7'), + ('libxml2', '2.8.0') +] moduleclass = 'math' diff --git a/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.0.0-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.0.0-ictce-4.0.6-Python-2.7.3.eb index 7391205922158dffee07b56bda557cd3665f7c12..ac6c64cf00c423478e59d4dcbb46864dd7911d9f 100644 --- a/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.0.0-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.0.0-ictce-4.0.6-Python-2.7.3.eb @@ -18,9 +18,9 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['https://launchpad.net/%s/%s.x/%s/+download' % (name.lower(), majver, version)] patches = [ - 'wl_pkg_linkflags.patch', - 'petsc-slepc-libs.patch' - ] + 'wl_pkg_linkflags.patch', + 'petsc-slepc-libs.patch' +] builddependencies = [('CMake', '2.8.4')] @@ -29,27 +29,27 @@ python_version = '2.7.3' versionsuffix = '-%s-%s' % (python, python_version) dependencies = [ - (python, python_version), - ('Boost', '1.49.0', versionsuffix), - ('UFC', '2.0.5', versionsuffix), - ('SWIG', '2.0.4', versionsuffix), - ('FFC', '1.0.0', versionsuffix), - ('FIAT', '1.0.0', versionsuffix), - ('Instant', '1.0.0', versionsuffix), - ('Viper', '1.0.0', versionsuffix), - ('UFL', '1.0.0', versionsuffix), - ('SCOTCH', '5.1.12b_esmumps'), - ('Armadillo', '2.4.4', versionsuffix), - ('ParMETIS', '4.0.2'), - ('SuiteSparse', '3.7.0', '-withparmetis'), - ('CGAL', '4.0', versionsuffix), - ('PETSc', '3.3-p2', versionsuffix), - ('SLEPc', '3.3-p1', versionsuffix), - ('MTL4', '4.0.8878', '', True), - ('Trilinos', '10.12.2', versionsuffix), - ('Sphinx', '1.1.3', versionsuffix), - ('zlib', '1.2.7'), - ('libxml2', '2.8.0') - ] + (python, python_version), + ('Boost', '1.49.0', versionsuffix), + ('UFC', '2.0.5', versionsuffix), + ('SWIG', '2.0.4', versionsuffix), + ('FFC', '1.0.0', versionsuffix), + ('FIAT', '1.0.0', versionsuffix), + ('Instant', '1.0.0', versionsuffix), + ('Viper', '1.0.0', versionsuffix), + ('UFL', '1.0.0', versionsuffix), + ('SCOTCH', '5.1.12b_esmumps'), + ('Armadillo', '2.4.4', versionsuffix), + ('ParMETIS', '4.0.2'), + ('SuiteSparse', '3.7.0', '-withparmetis'), + ('CGAL', '4.0', versionsuffix), + ('PETSc', '3.3-p2', versionsuffix), + ('SLEPc', '3.3-p1', versionsuffix), + ('MTL4', '4.0.8878', '', True), + ('Trilinos', '10.12.2', versionsuffix), + ('Sphinx', '1.1.3', versionsuffix), + ('zlib', '1.2.7'), + ('libxml2', '2.8.0') +] moduleclass = 'math' diff --git a/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.6.0-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.6.0-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..f6b89c67c7a85b7e7b5c68afba27699f3b3a481d --- /dev/null +++ b/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.6.0-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,67 @@ +name = 'DOLFIN' +version = '1.6.0' + +homepage = 'https://bitbucket.org/fenics-project/dolfin' +description = """DOLFIN is the C++/Python interface of FEniCS, providing a consistent PSE + (Problem Solving Environment) for ordinary and partial differential equations.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'usempi': True, 'pic': True, 'packed-linker-options': True} + +majver = version.split('.') +if majver[0] == '0': + majver = majver[0] +else: + majver = '.'.join(majver[0:2]) + +source_urls = ['https://bitbucket.org/fenics-project/dolfin/downloads/'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'DOLFIN-%(version)s_petsc-slepc-libs.patch', + 'DOLFIN-%(version)s_fix-SuiteSparse-4.3.patch', +] + +pyver = '2.7.11' +versionsuffix = '-Python-%s' % pyver + +builddependencies = [ + ('CMake', '3.4.1'), + ('SWIG', '3.0.8', versionsuffix), + ('patchelf', '0.8', '', ('GNU', '4.9.3-2.25')), +] +dependencies = [ + ('Python', pyver), + ('Boost', '1.59.0', versionsuffix), + ('FFC', version, versionsuffix), + ('FIAT', version, versionsuffix), + ('Instant', version, versionsuffix), + ('UFL', version, versionsuffix), + ('SCOTCH', '6.0.4'), + ('SuiteSparse', '4.4.6', '-ParMETIS-4.0.3'), + ('CGAL', '4.7', versionsuffix), + ('PETSc', '3.6.3', versionsuffix), + ('SLEPc', '3.6.2', versionsuffix), + ('MTL4', '4.0.9555', '', True), + ('HDF5', '1.8.15-patch1'), + ('Trilinos', '12.4.2', versionsuffix), + ('Sphinx', '1.3.3', versionsuffix), + ('zlib', '1.2.8'), + ('libxml2', '2.9.3', versionsuffix), + ('Eigen', '3.2.7'), + ('PLY', '3.8', versionsuffix), + ('VTK', '6.3.0', versionsuffix), + ('petsc4py', '3.6.0', versionsuffix), + ('slepc4py', '3.6.0', versionsuffix), + ('PaStiX', '5.2.2.22'), + ('CppUnit', '1.12.1'), + ('Qt', '4.8.7', versionsuffix), +] + +# supply path to libsuitesparseconfig.a for CHOLMOD/UMFPACK, see also patch file +configopts = "-DSUITESPARSECONFIG_DIR=$EBROOTSUITESPARSE/SuiteSparse_config " + +# demos run as tests fail with 'bad X server connection', skipping for now +runtest = False + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.6.0_fix-SuiteSparse-4.3.patch b/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.6.0_fix-SuiteSparse-4.3.patch new file mode 100644 index 0000000000000000000000000000000000000000..ab6e94c810988fbd01c477a7d0611a4943493813 --- /dev/null +++ b/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.6.0_fix-SuiteSparse-4.3.patch @@ -0,0 +1,26 @@ +make CMake script for CHOLMOD and UMFPACK consider SUITESPARSECONFIG_DIR when looking for libsuitesparseconfig.a +required because of changes made in SuiteSparse 4.3.0 +cfr. https://github.com/FEniCS/dolfin/issues/2 +author: Kenneth Hoste (HPC-UGent) +--- dolfin-1.6.0/cmake/modules/FindUMFPACK.cmake.orig 2016-01-12 14:49:31.660886973 +0100 ++++ dolfin-1.6.0/cmake/modules/FindUMFPACK.cmake 2016-01-12 15:20:07.597039273 +0100 +@@ -36,7 +36,7 @@ + + # Check for SUITESPARSECONFIG library + find_library(SUITESPARSECONFIG_LIBRARY suitesparseconfig +- HINTS ${UMFPACK_DIR}/lib $ENV{UMFPACK_DIR}/lib $ENV{PETSC_DIR}/lib ++ HINTS ${SUITESPARSECONFIG_DIR} ${UMFPACK_DIR}/lib $ENV{UMFPACK_DIR}/lib $ENV{PETSC_DIR}/lib + DOC "The SUITESPARSE library") + mark_as_advanced(SUITESPARSECONFIG_LIBRARY) + +--- dolfin-1.6.0/cmake/modules/FindCHOLMOD.cmake.orig 2015-07-28 17:05:55.000000000 +0200 ++++ dolfin-1.6.0/cmake/modules/FindCHOLMOD.cmake 2016-01-12 15:19:12.765414768 +0100 +@@ -84,7 +84,7 @@ + + # Check for SUITESPARSECONFIG library + find_library(SUITESPARSECONFIG_LIBRARY suitesparseconfig +- HINTS ${CHOLMOD_DIR}/lib ${CCOLAMD_DIR}/lib $ENV{CHOLMOD_DIR}/lib ++ HINTS ${SUITESPARSECONFIG_DIR} ${CHOLMOD_DIR}/lib ${CCOLAMD_DIR}/lib $ENV{CHOLMOD_DIR}/lib + $ENV{CCOLAMD_DIR}/lib $ENV{PETSC_DIR}/lib + DOC "The SUITESPARSECONFIG library") + diff --git a/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.6.0_petsc-slepc-libs.patch b/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.6.0_petsc-slepc-libs.patch new file mode 100644 index 0000000000000000000000000000000000000000..579635c05c27b2418286b2c1897a100e3bc5fdfb --- /dev/null +++ b/easybuild/easyconfigs/d/DOLFIN/DOLFIN-1.6.0_petsc-slepc-libs.patch @@ -0,0 +1,18 @@ +fix to use external PETSc +author: Kenneth Hoste (HPC-UGent) +diff -ru cmake/modules/FindPETSc.cmake cmake/modules/FindPETSc.cmake +--- cmake/modules/FindPETSc.cmake 2011-12-07 22:21:22.000000000 +0100 ++++ cmake/modules/FindPETSc.cmake 2012-08-10 13:02:21.032955197 +0200 +@@ -114,9 +114,10 @@ + petsc_get_variable(PETSC_INCLUDE PETSC_INCLUDE) # 3.1 + petsc_get_variable(PETSC_CC_INCLUDES PETSC_CC_INCLUDES) # dev + set(PETSC_INCLUDE ${PETSC_INCLUDE} ${PETSC_CC_INCLUDES}) +- petsc_get_variable(PETSC_LIB_BASIC PETSC_LIB_BASIC) ++ petsc_get_variable(PETSC_WITH_EXTERNAL_LIB PETSC_WITH_EXTERNAL_LIB) + petsc_get_variable(PETSC_LIB_DIR PETSC_LIB_DIR) +- set(PETSC_LIB "-L${PETSC_LIB_DIR} ${PETSC_LIB_BASIC}") ++ set(PETSC_LIB "-L${PETSC_LIB_DIR} ${PETSC_WITH_EXTERNAL_LIB}") ++ message(STATUS "PETSC_LIB ${PETSC_LIB}") + + # Remove temporary Makefile + file(REMOVE ${petsc_config_makefile}) diff --git a/easybuild/easyconfigs/d/DendroPy/DendroPy-3.12.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/d/DendroPy/DendroPy-3.12.0-goolf-1.4.10-Python-2.7.3.eb index 2734b69ecf14a796ce307f7e71c28e2dbc4109a0..7d7b15088e5cb84bfe4f68f38ca30def4bb5195b 100644 --- a/easybuild/easyconfigs/d/DendroPy/DendroPy-3.12.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/d/DendroPy/DendroPy-3.12.0-goolf-1.4.10-Python-2.7.3.eb @@ -1,5 +1,5 @@ ## -#This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild # # Copyright:: Copyright 2013-2014 The Cyprus Institute # Authors:: Thekla Loizou @@ -31,8 +31,8 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [(python, pythonversion)] sanity_check_paths = { - 'files': ['bin/cattrees.py','bin/long_branch_symmdiff.py','bin/sumlabels.py', - 'bin/sumtrees.py','bin/strict_consensus_merge.py'], + 'files': ['bin/cattrees.py', 'bin/long_branch_symmdiff.py', 'bin/sumlabels.py', + 'bin/sumtrees.py', 'bin/strict_consensus_merge.py'], 'dirs': [], } diff --git a/easybuild/easyconfigs/d/Docutils/Docutils-0.9.1-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/d/Docutils/Docutils-0.9.1-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 67c0828444d65f25dfaa7f8ba1e0ea01a48dc306..05f82d3b1dfc6adad2315159bb3bce0cd5d74906 100644 --- a/easybuild/easyconfigs/d/Docutils/Docutils-0.9.1-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/d/Docutils/Docutils-0.9.1-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -24,8 +24,8 @@ dependencies = [(python, pythonversion)] pylibdir = "lib/python%s/site-packages/%s" % (".".join(pythonversion.split(".")[0:2]), name.lower()) sanity_check_paths = { - 'files': [], - 'dirs': ["bin", pylibdir] - } + 'files': [], + 'dirs': ["bin", pylibdir] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/d/Docutils/Docutils-0.9.1-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/d/Docutils/Docutils-0.9.1-goolf-1.4.10-Python-2.7.3.eb index 53a00b7cbb3ed99cb80e269bea524d6b65cd8b18..b16e3ee2f072771a7d5add996fe556bcedc90449 100644 --- a/easybuild/easyconfigs/d/Docutils/Docutils-0.9.1-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/d/Docutils/Docutils-0.9.1-goolf-1.4.10-Python-2.7.3.eb @@ -24,8 +24,8 @@ dependencies = [(python, pythonversion)] pylibdir = "lib/python%s/site-packages/%s" % (".".join(pythonversion.split(".")[0:2]), name.lower()) sanity_check_paths = { - 'files': [], - 'dirs': ["bin", pylibdir] - } + 'files': [], + 'dirs': ["bin", pylibdir] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/d/Docutils/Docutils-0.9.1-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/d/Docutils/Docutils-0.9.1-ictce-4.0.6-Python-2.7.3.eb index bcb77c28180032581ead348ac35703719a22d0dd..e54119ec9b9a112ae3b776387df9d549d444b159 100644 --- a/easybuild/easyconfigs/d/Docutils/Docutils-0.9.1-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/d/Docutils/Docutils-0.9.1-ictce-4.0.6-Python-2.7.3.eb @@ -24,8 +24,8 @@ dependencies = [(python, pythonversion)] pylibdir = "lib/python%s/site-packages/%s" % (".".join(pythonversion.split(".")[0:2]), name.lower()) sanity_check_paths = { - 'files': [], - 'dirs': ["bin", pylibdir] - } + 'files': [], + 'dirs': ["bin", pylibdir] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/d/Docutils/Docutils-0.9.1-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/d/Docutils/Docutils-0.9.1-ictce-5.3.0-Python-2.7.3.eb index 63105571a87be5bc313d48681e97ce3d8a4d62f9..9fcadcde270a75eda0d232e55a99c489e1de646c 100644 --- a/easybuild/easyconfigs/d/Docutils/Docutils-0.9.1-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/d/Docutils/Docutils-0.9.1-ictce-5.3.0-Python-2.7.3.eb @@ -25,8 +25,8 @@ dependencies = [(python, pythonversion)] pylibdir = "lib/python%s/site-packages/%s" % (".".join(pythonversion.split(".")[0:2]), name.lower()) sanity_check_paths = { - 'files': [], - 'dirs': ["bin", pylibdir] - } + 'files': [], + 'dirs': ["bin", pylibdir] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.1.1-ictce-5.4.0.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.1.1-ictce-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..bb6520334158a07cb05dca850c82af504defd25f --- /dev/null +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.1.1-ictce-5.4.0.eb @@ -0,0 +1,18 @@ +name = 'Doxygen' +version = '1.8.1.1' + +homepage = 'http://www.doxygen.org' +description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, + IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" + +toolchain = {'name': 'ictce', 'version': '5.4.0'} + +sources = ['%(namelower)s-%(version)s.src.tar.gz'] +source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] + +builddependencies = [ + ('flex', '2.5.35'), + ('Bison', '2.5'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.10-foss-2015b.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.10-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..2185cbf1af6dd3cd18f4ca3d677e99188ebaf7cf --- /dev/null +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.10-foss-2015b.eb @@ -0,0 +1,19 @@ +name = 'Doxygen' +version = '1.8.10' + +homepage = 'http://www.doxygen.org' +description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, + IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +sources = ['%(namelower)s-%(version)s.src.tar.gz'] +source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] + +builddependencies = [ + ('CMake', '3.4.1'), + ('flex', '2.5.39'), + ('Bison', '3.0.4'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.11-GCC-4.9.2.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.11-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..5adccf48d70476aee19c14ae1596e1fb79b5676d --- /dev/null +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.11-GCC-4.9.2.eb @@ -0,0 +1,19 @@ +name = 'Doxygen' +version = '1.8.11' + +homepage = 'http://www.doxygen.org' +description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, + IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +sources = ['%(namelower)s-%(version)s.src.tar.gz'] +source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] + +builddependencies = [ + ('CMake', '3.4.1'), + ('flex', '2.6.0'), + ('Bison', '3.0.4'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.11-foss-2015a.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.11-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..1db648e43da586836ab0c3363835af1f96228f92 --- /dev/null +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.11-foss-2015a.eb @@ -0,0 +1,19 @@ +name = 'Doxygen' +version = '1.8.11' + +homepage = 'http://www.doxygen.org' +description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, + IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = ['%(namelower)s-%(version)s.src.tar.gz'] +source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] + +builddependencies = [ + ('CMake', '3.4.1'), + ('flex', '2.6.0'), + ('Bison', '3.0.4'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.11-intel-2016a.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.11-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..2d5dc8597f3f6417bf228fc27656f6292b38ede9 --- /dev/null +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.11-intel-2016a.eb @@ -0,0 +1,19 @@ +name = 'Doxygen' +version = '1.8.11' + +homepage = 'http://www.doxygen.org' +description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, + IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = ['%(namelower)s-%(version)s.src.tar.gz'] +source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] + +builddependencies = [ + ('CMake', '3.4.3'), + ('flex', '2.6.0'), + ('Bison', '3.0.4'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.3.1-goolf-1.5.14.eb b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.3.1-goolf-1.5.14.eb index 14b0fa758317b025eb7e901f723f309c783d7c27..2e87b89a364851b99d2cf08c6b07f869e8962e62 100644 --- a/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.3.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/d/Doxygen/Doxygen-1.8.3.1-goolf-1.5.14.eb @@ -5,7 +5,7 @@ homepage = 'http://www.doxygen.org' description = """Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.""" -toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchain = {'name': 'goolf', 'version': '1.5.14'} sources = ['%(namelower)s-%(version)s.src.tar.gz'] source_urls = ['http://ftp.stack.nl/pub/users/dimitri/'] diff --git a/easybuild/easyconfigs/e/ECore/ECore-1.5.2-ictce-5.5.0-clusterapps.eb b/easybuild/easyconfigs/e/ECore/ECore-1.5.2-ictce-5.5.0-clusterapps.eb index ca072da66b97cf40efb62307a4a5ff7187e826b3..56e86c8e44d79093978ee26324bf5924c06b28ee 100644 --- a/easybuild/easyconfigs/e/ECore/ECore-1.5.2-ictce-5.5.0-clusterapps.eb +++ b/easybuild/easyconfigs/e/ECore/ECore-1.5.2-ictce-5.5.0-clusterapps.eb @@ -18,9 +18,9 @@ patches = ['ecore-license-var.patch'] dependencies = [('OpenMPI', '1.4.5')] sanity_check_paths = { - 'files': ['arch/linux-rh5-x86_64/bin/%s' % x for x in ['absperm', 'FormationFactor', 'nmr', - 'orterun', 'packer', 'randomwalkffmpi', - 'unpacker']] + \ + 'files': ['arch/linux-rh5-x86_64/bin/%s' % x for x in ['absperm', 'FormationFactor', 'nmr', + 'orterun', 'packer', 'randomwalkffmpi', + 'unpacker']] + ['absperm.sh', 'formationfactor.sh', 'nmr.sh', 'rw_formationfactor.sh'], 'dirs': [], } diff --git a/easybuild/easyconfigs/e/ECore/ECore-1.5.2-ictce-5.5.0.eb b/easybuild/easyconfigs/e/ECore/ECore-1.5.2-ictce-5.5.0.eb index 7c028041b8bfab81c7c099d20a5f69dee694a615..d93540e9b8d1175d73b994a743d6f4c34688de24 100644 --- a/easybuild/easyconfigs/e/ECore/ECore-1.5.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/ECore/ECore-1.5.2-ictce-5.5.0.eb @@ -16,7 +16,7 @@ patches = ['ecore-license-var.patch'] dependencies = [('OpenMPI', '1.4.5')] sanity_check_paths = { - 'files': ["ecore.sh", 'noarch/launch.sh'] + \ + 'files': ["ecore.sh", 'noarch/launch.sh'] + ['arch/linux-rh5-x86_64/bin/%s' % x for x in ['diagenesismodeller', 'ecore', 'packer', 'PorenetworkExtraction', 'Poresim', 'unpacker']], 'dirs': [], diff --git a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb index 6294e116566fcea740cd84d4e6216c283620b368..89cd537fc7b264a12fc90732f4f375eb70ed066e 100644 --- a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.3.0.eb @@ -15,7 +15,7 @@ version = '2013.11' homepage = 'http://elpa.rzg.mpg.de' description = """Eigenvalue SoLvers for Petaflop-Applications .""" -toolchain = {'name': 'ictce', 'version': '5.3.0'} +toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'usempi': True} # download at http://elpa.rzg.mpg.de/elpa-tar-archive diff --git a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb index c080908b4295b548ed7a1f54a5726881d50b6f6f..bbbc8c56b4e9bfe4f9149b3d0cbd77ac21735920 100644 --- a/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/e/ELPA/ELPA-2013.11-ictce-5.5.0.eb @@ -15,7 +15,7 @@ version = '2013.11' homepage = 'http://elpa.rzg.mpg.de' description = """Eigenvalue SoLvers for Petaflop-Applications .""" -toolchain = {'name': 'ictce', 'version': '5.5.0'} +toolchain = {'name': 'ictce', 'version': '5.5.0'} toolchainopts = {'optarch': True, 'usempi': True} # download at http://elpa.rzg.mpg.de/elpa-tar-archive diff --git a/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-goolf-1.4.10.eb index 85c2d23a0ee5236ded07489481064b30cdb10064..8ac9aea768a9d798d1eeccb4c6fe04cfa8ecefe7 100644 --- a/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-goolf-1.4.10.eb @@ -3,7 +3,7 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'ELPH' version = '1.0.1' @@ -26,7 +26,7 @@ buildopts = ' CC="$CC"' parallel = 1 -files_to_copy = [ (["elph"], "bin"), "COPYRIGHT", "LICENSE", "Readme.ELPH", "VERSION" ] +files_to_copy = [(["elph"], "bin"), "COPYRIGHT", "LICENSE", "Readme.ELPH", "VERSION"] sanity_check_paths = { 'files': ["bin/elph"], diff --git a/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-ictce-6.2.5.eb b/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-ictce-6.2.5.eb index a6057c15fd1cf2c97d68c5020ba9f49fe4a30c4e..ba2c506ee5e9a285361752a4df4dc6d3c0f285e0 100644 --- a/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/e/ELPH/ELPH-1.0.1-ictce-6.2.5.eb @@ -3,7 +3,7 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'ELPH' version = '1.0.1' @@ -26,7 +26,7 @@ buildopts = ' CC="$CC"' parallel = 1 -files_to_copy = [ (["elph"], "bin"), "COPYRIGHT", "LICENSE", "Readme.ELPH", "VERSION" ] +files_to_copy = [(["elph"], "bin"), "COPYRIGHT", "LICENSE", "Readme.ELPH", "VERSION"] sanity_check_paths = { 'files': ["bin/elph"], diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb index 740d133cb44dc3821265259e4343b4d817a259df..6e775a095b524731a063a8ccc9a2ccae19348940 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goalf-1.1.0-no-OFED.eb @@ -21,8 +21,8 @@ source_urls = ['http://elinks.or.cz/download/'] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sanity_check_paths = { - 'files': ['bin/elinks'], - 'dirs': [] - } + 'files': ['bin/elinks'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb index 098e55a84ecc6aaa913933ae178604aa087da011..ee65cc074ef8d477dc0b9ec1f50e05211f03e55c 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-goolf-1.4.10.eb @@ -21,8 +21,8 @@ source_urls = ['http://elinks.or.cz/download/'] toolchain = {'name': 'goolf', 'version': '1.4.10'} sanity_check_paths = { - 'files': ['bin/elinks'], - 'dirs': [] - } + 'files': ['bin/elinks'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb index 3298a3a17d051c0d2620272f12691f3bafeb5f08..413650f9a5791b1b4312fce68976ff3048c9b3ff 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-4.0.6.eb @@ -21,8 +21,8 @@ source_urls = ['http://elinks.or.cz/download/'] toolchain = {'version': '4.0.6', 'name': 'ictce'} sanity_check_paths = { - 'files': ['bin/elinks'], - 'dirs': [] - } + 'files': ['bin/elinks'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb index 1dbae1bd2fb07c91feed4eab89f138242dda142d..176ffcb6bd9b366bcddee23283310613c518663a 100644 --- a/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/ELinks/ELinks-0.12pre5-ictce-5.3.0.eb @@ -22,8 +22,8 @@ source_urls = ['http://elinks.or.cz/download/'] toolchain = {'name': 'ictce', 'version': '5.3.0'} sanity_check_paths = { - 'files': ['bin/elinks'], - 'dirs': [] - } + 'files': ['bin/elinks'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb index ae4e3793e60083908662d9c236f6dfafb1f22946..c8367acc3482a00203326be2bb66eb59851f8639 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-goolf-1.4.10.eb @@ -31,7 +31,7 @@ configopts = " --with-hpdf=$EBROOTLIBHARU " parallel = 1 sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['seqret', 'aligncopy', 'profit', 'prophet']] + + 'files': ['bin/%s' % x for x in ['seqret', 'aligncopy', 'profit', 'prophet']] + ['lib/lib%s.a' % x for x in ['acd', 'ajax', 'ajaxdb', 'ajaxg', 'eexpat', 'ensembl', 'epcre', 'eplplot', 'ezlib', 'nucleus']] + ['share/EMBOSS/jemboss/lib/jemboss.jar'], diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb index f3660e8c90267e5ea244f121627fd1633af0879c..7100e7cae910f7abc94993d361d9cd40d7a2a44d 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-4.1.13.eb @@ -31,7 +31,7 @@ configopts = " --with-hpdf=$EBROOTLIBHARU " parallel = 1 sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['seqret', 'aligncopy', 'profit', 'prophet']] + + 'files': ['bin/%s' % x for x in ['seqret', 'aligncopy', 'profit', 'prophet']] + ['lib/lib%s.a' % x for x in ['acd', 'ajax', 'ajaxdb', 'ajaxg', 'eexpat', 'ensembl', 'epcre', 'eplplot', 'ezlib', 'nucleus']] + ['share/EMBOSS/jemboss/lib/jemboss.jar'], diff --git a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb index f34568c03769ed40cd3fab7b0d7f00492b06ba91..88380bcbaba3a92fc7b063101eed3f0c92230040 100644 --- a/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/EMBOSS/EMBOSS-6.5.7-ictce-5.3.0.eb @@ -31,7 +31,7 @@ configopts = " --with-hpdf=$EBROOTLIBHARU " parallel = 1 sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['seqret', 'aligncopy', 'profit', 'prophet']] + + 'files': ['bin/%s' % x for x in ['seqret', 'aligncopy', 'profit', 'prophet']] + ['lib/lib%s.a' % x for x in ['acd', 'ajax', 'ajaxdb', 'ajaxg', 'eexpat', 'ensembl', 'epcre', 'eplplot', 'ezlib', 'nucleus']] + ['share/EMBOSS/jemboss/lib/jemboss.jar'], diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb index dac20cc956ac2a5def6d4c864fffb7620d68c0a8..5ef397df32b73dc60df22828aca5eba887ff4a7f 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-parallel.eb @@ -10,8 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-80.html ## -name = 'ESPResSo' -version = '3.1.1' +name = 'ESPResSo' +version = '3.1.1' versionsuffix = '-parallel' homepage = 'http://espressomd.org/' @@ -20,15 +20,15 @@ description = """ESPResSo is a highly versatile software package for performing of coarse-grained atomistic or bead-spring models as they are used in soft-matter research in physics, chemistry and molecular biology.""" -toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} +toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -configopts = '--with-mpi' +configopts = '--with-mpi' sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://download.savannah.gnu.org/releases/espressomd/')] dependencies = [ - ('Tcl', '8.5.12'), - ] + ('Tcl', '8.5.12'), +] moduleclass = 'phys' diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb index fbac4052147ed3f9d7722304830f6a86302e8d0d..dc0eba6edb4fd2c4f9745164aa5b985516929959 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goalf-1.1.0-no-OFED-serial.eb @@ -10,8 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-80.html ## -name = 'ESPResSo' -version = '3.1.1' +name = 'ESPResSo' +version = '3.1.1' versionsuffix = '-serial' homepage = 'http://espressomd.org/' @@ -20,15 +20,15 @@ description = """ESPResSo is a highly versatile software package for performing of coarse-grained atomistic or bead-spring models as they are used in soft-matter research in physics, chemistry and molecular biology.""" -toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} +toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'optarch': True, 'pic': True} -configopts = '' # Modify this line to add or change espresso config options +configopts = '' # Modify this line to add or change espresso config options sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://download.savannah.gnu.org/releases/espressomd/')] dependencies = [ - ('Tcl', '8.5.12'), - ] + ('Tcl', '8.5.12'), +] moduleclass = 'phys' diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb index 39f5667ba5c2a4dd05d5dfedaf66f89e1b0197ee..209b0e8d818c0dbd4bc1666231958ef50b8b4461 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-parallel.eb @@ -10,8 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-80.html ## -name = 'ESPResSo' -version = '3.1.1' +name = 'ESPResSo' +version = '3.1.1' versionsuffix = '-parallel' homepage = 'http://espressomd.org/' @@ -22,13 +22,13 @@ description = """ESPResSo is a highly versatile software package for performing toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -configopts = '--with-mpi' +configopts = '--with-mpi' sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://download.savannah.gnu.org/releases/espressomd/')] dependencies = [ - ('Tcl', '8.5.12'), - ] + ('Tcl', '8.5.12'), +] moduleclass = 'phys' diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb index 79d7c269620ff525a7e05b98545ab8baa6970402..80ab0978a15839098c444bb74947496b7259a242 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-goolf-1.4.10-serial.eb @@ -10,8 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-80.html ## -name = 'ESPResSo' -version = '3.1.1' +name = 'ESPResSo' +version = '3.1.1' versionsuffix = '-serial' homepage = 'http://espressomd.org/' @@ -22,13 +22,13 @@ description = """ESPResSo is a highly versatile software package for performing toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True} -configopts = '' # Modify this line to add or change espresso config options +configopts = '' # Modify this line to add or change espresso config options sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://download.savannah.gnu.org/releases/espressomd/')] dependencies = [ - ('Tcl', '8.5.12'), - ] + ('Tcl', '8.5.12'), +] moduleclass = 'phys' diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb index 0d5009ded455c4503119afce6f6110236c5e4b27..5b960cc12d0d5416739c7ecab4a9bfc9ff0c2d7e 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-parallel.eb @@ -10,8 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-80.html ## -name = 'ESPResSo' -version = '3.1.1' +name = 'ESPResSo' +version = '3.1.1' versionsuffix = '-parallel' homepage = 'http://espressomd.org/' @@ -20,15 +20,15 @@ description = """ESPResSo is a highly versatile software package for performing of coarse-grained atomistic or bead-spring models as they are used in soft-matter research in physics, chemistry and molecular biology.""" -toolchain = {'name': 'ictce', 'version': '4.0.6'} +toolchain = {'name': 'ictce', 'version': '4.0.6'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -configopts = '--with-mpi' +configopts = '--with-mpi' sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://download.savannah.gnu.org/releases/espressomd/')] dependencies = [ - ('Tcl', '8.5.12'), - ] + ('Tcl', '8.5.12'), +] moduleclass = 'phys' diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb index 638f30315a53c9f49db52db08892ac51e86b9357..21dd493eb1e4dbc95515625e0f740f55d9ea89ff 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-4.0.6-serial.eb @@ -10,8 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-80.html ## -name = 'ESPResSo' -version = '3.1.1' +name = 'ESPResSo' +version = '3.1.1' versionsuffix = '-serial' homepage = 'http://espressomd.org/' @@ -20,15 +20,15 @@ description = """ESPResSo is a highly versatile software package for performing of coarse-grained atomistic or bead-spring models as they are used in soft-matter research in physics, chemistry and molecular biology.""" -toolchain = {'name': 'ictce', 'version': '4.0.6'} +toolchain = {'name': 'ictce', 'version': '4.0.6'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -configopts = '--with-mpi' +configopts = '--with-mpi' sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://download.savannah.gnu.org/releases/espressomd/')] dependencies = [ - ('Tcl', '8.5.12'), - ] + ('Tcl', '8.5.12'), +] moduleclass = 'phys' diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb index 890278722c6024bf7fa69c42c78f6a73355b32ab..9ad3efca4c6877e5e16fce297c064ea26e70b403 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-parallel.eb @@ -10,8 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-80.html ## -name = 'ESPResSo' -version = '3.1.1' +name = 'ESPResSo' +version = '3.1.1' versionsuffix = '-parallel' homepage = 'http://espressomd.org/' @@ -23,13 +23,13 @@ description = """ESPResSo is a highly versatile software package for performing toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -configopts = '--with-mpi' +configopts = '--with-mpi' sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://download.savannah.gnu.org/releases/espressomd/')] dependencies = [ - ('Tcl', '8.5.12'), - ] + ('Tcl', '8.5.12'), +] moduleclass = 'phys' diff --git a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb index dd73e5835e9df0289a879d4d9fab337e2916cb38..525e2ebf3e22dbde604e44c2fcb7c5127603aaac 100644 --- a/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb +++ b/easybuild/easyconfigs/e/ESPResSo/ESPResSo-3.1.1-ictce-5.3.0-serial.eb @@ -10,8 +10,8 @@ # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-80.html ## -name = 'ESPResSo' -version = '3.1.1' +name = 'ESPResSo' +version = '3.1.1' versionsuffix = '-serial' homepage = 'http://espressomd.org/' @@ -23,13 +23,13 @@ description = """ESPResSo is a highly versatile software package for performing toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} -configopts = '--with-mpi' +configopts = '--with-mpi' sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://download.savannah.gnu.org/releases/espressomd/')] dependencies = [ - ('Tcl', '8.5.12'), - ] + ('Tcl', '8.5.12'), +] moduleclass = 'phys' diff --git a/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-goolf-1.4.10.eb index f270612d5f3fb42b24c61890c2353e5d5d0ea9f4..17f0b9d1607f00acf7424b9b79d6ac7b69592647 100644 --- a/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ETSF_IO/ETSF_IO-1.0.4-goolf-1.4.10.eb @@ -24,10 +24,10 @@ configopts = "--with-netcdf-prefix=$EBROOTNETCDF " configopts += "--with-netcdf-libs='-L$EBROOTNETCDF/lib -lnetcdf -lnetcdff' " configopts += " --with-netcdf-incs='-I$EBROOTNETCDF/include'" -dependencies = [ ('netCDF', '4.1.3') ] +dependencies = [('netCDF', '4.1.3')] sanity_check_paths = { - 'files': ["bin/etsf_io"], + 'files': ["bin/etsf_io"], 'dirs': [] } diff --git a/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.6.0.eb b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.6.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..01e4502a0900b86f27dccb328b5bf89d5be86d3e --- /dev/null +++ b/easybuild/easyconfigs/e/EasyBuild/EasyBuild-2.6.0.eb @@ -0,0 +1,31 @@ +easyblock = 'EB_EasyBuildMeta' + +name = 'EasyBuild' +version = '2.6.0' + +homepage = 'http://hpcugent.github.com/easybuild/' +description = """EasyBuild is a software build and installation framework + written in Python that allows you to install software in a structured, + repeatable and robust way.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = [ + 'https://pypi.python.org/packages/source/v/vsc-base/', + 'https://pypi.python.org/packages/source/e/easybuild-framework/', + 'https://pypi.python.org/packages/source/e/easybuild-easyblocks/', + 'https://pypi.python.org/packages/source/e/easybuild-easyconfigs/', +] +# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?) +sources = [ + 'vsc-base-2.2.4.tar.gz', + 'easybuild-framework-%(version)s.tar.gz', + 'easybuild-easyblocks-%(version)s.tar.gz', + 'easybuild-easyconfigs-%(version)s.tar.gz', +] + +# EasyBuild is a (set of) Python packages, so it depends on Python +# usually, we want to use the system Python, so no actual Python dependency is listed +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/EggLib/EggLib-2.1.10-intel-2016a.eb b/easybuild/easyconfigs/e/EggLib/EggLib-2.1.10-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..d32e7db6161a0cd36c5380589519f07016722df1 --- /dev/null +++ b/easybuild/easyconfigs/e/EggLib/EggLib-2.1.10-intel-2016a.eb @@ -0,0 +1,20 @@ +name = 'EggLib' +version = '2.1.10' + +homepage = 'http://egglib.sourceforge.net/' +description = """EggLib is a C++/Python library and program package for evolutionary genetics and genomics.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [ + '%(namelower)s-cpp-%(version)s.tar.gz', + '%(namelower)s-py-%(version)s.tar.gz', +] + +dependencies = [ + ('Python', '2.7.11'), + ('GSL', '2.1'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-2.0.17-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Eigen/Eigen-2.0.17-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..a9cf3457671e383e781c4df906461f81cd4135fc --- /dev/null +++ b/easybuild/easyconfigs/e/Eigen/Eigen-2.0.17-goolf-1.4.10.eb @@ -0,0 +1,14 @@ +name = 'Eigen' +version = '2.0.17' + +homepage = 'http://eigen.tuxfamily.org/index.php?title=Main_Page' +description = """Eigen is a C++ template library for linear algebra: +matrices, vectors, numerical solvers, and related algorithms.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get'] +sources = ['%(version)s.tar.bz2'] + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/e/Eigen/Eigen-3.2.7-intel-2016a.eb b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.7-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..5e2d4fc5a2ba7d3fbe50fa0dc37dd237a7b3cfd1 --- /dev/null +++ b/easybuild/easyconfigs/e/Eigen/Eigen-3.2.7-intel-2016a.eb @@ -0,0 +1,14 @@ +name = 'Eigen' +version = '3.2.7' + +homepage = 'http://eigen.tuxfamily.org/index.php?title=Main_Page' +description = """Eigen is a C++ template library for linear algebra: + matrices, vectors, numerical solvers, and related algorithms.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://bitbucket.org/%(namelower)s/%(namelower)s/get'] +sources = ['%(version)s.tar.bz2'] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3-bare.eb b/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3-bare.eb index 68f945c239d3605a84ecfe6c273e6b0a6e0f29c7..8e47359be16c01f74373272ae50c5b11764e6837 100644 --- a/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3-bare.eb +++ b/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3-bare.eb @@ -10,7 +10,7 @@ description = """GNU Emacs is an extensible, customizable text editor—and more with extensions to support text editing.""" toolchain = {'name': 'GCC', 'version': '4.8.3'} -toolchainopts = {} +toolchainopts = {} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3.eb b/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3.eb index cb835bb8cddcb990337f5cc6817993c45f4ca103..485bc706648e8f6055b6c3b6d53b7253a3912564 100644 --- a/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/e/Emacs/Emacs-24.3-GCC-4.8.3.eb @@ -9,7 +9,7 @@ description = """GNU Emacs is an extensible, customizable text editor—and more with extensions to support text editing.""" toolchain = {'name': 'GCC', 'version': '4.8.3'} -toolchainopts = {} +toolchainopts = {} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2-no-Java.eb b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2-no-Java.eb index 4e009be5c9a156fe8a181b700d988dc5d7cf9a88..570e7eb37f89ab40e4f515d259453b4151a2c4ce 100644 --- a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2-no-Java.eb +++ b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2-no-Java.eb @@ -16,7 +16,7 @@ configopts = '--without-javac ' sanity_check_paths = { 'files': ['bin/erl'], - 'dirs': ['lib/erlang/bin', 'lib/erlang/lib'], + 'dirs': ['lib/erlang/bin', 'lib/erlang/lib'], } moduleclass = 'lang' diff --git a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2.eb b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2.eb index 9f3aa94ef1c682f9d0155543184bbba1ee044b24..3968d910aa4933899d9e7ec07eb8c9817944324a 100644 --- a/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/e/ErlangOTP/ErlangOTP-R16B02-GCC-4.7.2.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'GCC', 'version': '4.7.2'} sources = ['otp_src_%(version)s.tar.gz'] source_urls = ['http://www.erlang.org/download'] -builddependencies = [('Java','1.7.0_45','',True)] +builddependencies = [('Java', '1.7.0_45', '', True)] configopts = '--with-javac ' diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb index 2bc0ea310e4f77bbbdb6c26239d7a5337d95cc48..7f862017dd052b049dff9967f0be8edb84b941b6 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-goolf-1.4.10.eb @@ -20,7 +20,7 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('GLib', '2.34.3')] -# parallel build fails +# parallel build fails parallel = 1 sanity_check_paths = { diff --git a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb index 36527565d8dcd05cff4e95c3780b037e699481e7..899422100cb3fc364bab7683de862f9565308a43 100644 --- a/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/Exonerate/Exonerate-2.2.0-ictce-5.3.0.eb @@ -20,7 +20,7 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('GLib', '2.34.3')] -# parallel build fails +# parallel build fails parallel = 1 sanity_check_paths = { diff --git a/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-goolf-1.4.10.eb b/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-goolf-1.4.10.eb index eb6680d2d69afb75d0f4d3ba41252280cc312eb0..037dcd81856fd8d14e1c872bcb87c2e6cf290ed7 100644 --- a/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/eXpress/eXpress-1.5.1-goolf-1.4.10.eb @@ -25,7 +25,7 @@ builddependencies = [ ] dependencies = [ - ('Boost', '1.51.0'), # Boost-1.53.0 not working? + ('Boost', '1.51.0'), # Boost-1.53.0 not working? ('gperftools', '2.1'), ('protobuf', '2.5.0') ] diff --git a/easybuild/easyconfigs/e/ed/ed-1.9-goolf-1.4.10.eb b/easybuild/easyconfigs/e/ed/ed-1.9-goolf-1.4.10.eb index 361605cda983330a587321e36f1860aa3822bf5e..b0dc02f6dd5cb72be74e4a74349e5aaddae51228 100644 --- a/easybuild/easyconfigs/e/ed/ed-1.9-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/e/ed/ed-1.9-goolf-1.4.10.eb @@ -12,8 +12,8 @@ sources = [SOURCE_TAR_GZ] source_urls = [GNU_SOURCE] sanity_check_paths = { - 'files' : ['bin/ed'], - 'dirs' : [], + 'files': ['bin/ed'], + 'dirs': [], } moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/ed/ed-1.9-ictce-5.3.0.eb b/easybuild/easyconfigs/e/ed/ed-1.9-ictce-5.3.0.eb index babb529111d7fd3ffef11927abdadfed0f1bedd6..48f5d0b7b4e0539a6752834c448adbf56a133158 100644 --- a/easybuild/easyconfigs/e/ed/ed-1.9-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/e/ed/ed-1.9-ictce-5.3.0.eb @@ -12,8 +12,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://ftpmirror.gnu.org/%(name)s/'] sanity_check_paths = { - 'files' : ['bin/ed'], - 'dirs' : [], + 'files': ['bin/ed'], + 'dirs': [], } moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/eudev/eudev-3.0-intel-2014b.eb b/easybuild/easyconfigs/e/eudev/eudev-3.0-intel-2014b.eb index a1c5928f0bf84c89e93acc15c41b9a4bad728227..464dcb0125d6e58255e6774c6133f50c77e37052 100644 --- a/easybuild/easyconfigs/e/eudev/eudev-3.0-intel-2014b.eb +++ b/easybuild/easyconfigs/e/eudev/eudev-3.0-intel-2014b.eb @@ -26,8 +26,8 @@ configopts = '--disable-blkid --disable-selinux --disable-gudev --disable-manpag runtest = 'check' sanity_check_paths = { - 'files' : ['bin/udevadm', 'include/libudev.h', 'include/udev.h', 'lib/libudev.so.1'], - 'dirs' : [], + 'files': ['bin/udevadm', 'include/libudev.h', 'include/udev.h', 'lib/libudev.so.1'], + 'dirs': [], } moduleclass = 'system' diff --git a/easybuild/easyconfigs/e/eudev/eudev-3.0-intel-2015a.eb b/easybuild/easyconfigs/e/eudev/eudev-3.0-intel-2015a.eb index 5108981bdd56eec3bf4f1e4f0863d1da9041657c..245048609d040f3e4ce8b94eae31fd845d817a10 100644 --- a/easybuild/easyconfigs/e/eudev/eudev-3.0-intel-2015a.eb +++ b/easybuild/easyconfigs/e/eudev/eudev-3.0-intel-2015a.eb @@ -26,8 +26,8 @@ configopts = '--disable-blkid --disable-selinux --disable-gudev --disable-manpag runtest = 'check' sanity_check_paths = { - 'files' : ['bin/udevadm', 'include/libudev.h', 'include/udev.h', 'lib/libudev.so.1'], - 'dirs' : [], + 'files': ['bin/udevadm', 'include/libudev.h', 'include/udev.h', 'lib/libudev.so.1'], + 'dirs': [], } moduleclass = 'system' diff --git a/easybuild/easyconfigs/e/eudev/eudev-3.1.2-intel-2015b.eb b/easybuild/easyconfigs/e/eudev/eudev-3.1.2-intel-2015b.eb index b06feacb05c07410939cc1d28a1a7bb96471e2f0..da7d5f4069afe775e9d5263c1eb71ae9daebf6fe 100644 --- a/easybuild/easyconfigs/e/eudev/eudev-3.1.2-intel-2015b.eb +++ b/easybuild/easyconfigs/e/eudev/eudev-3.1.2-intel-2015b.eb @@ -26,8 +26,8 @@ configopts = '--disable-blkid --disable-selinux --disable-gudev --disable-manpag runtest = 'check' sanity_check_paths = { - 'files' : ['bin/udevadm', 'include/libudev.h', 'include/udev.h', 'lib/libudev.so.1'], - 'dirs' : [], + 'files': ['bin/udevadm', 'include/libudev.h', 'include/udev.h', 'lib/libudev.so.1'], + 'dirs': [], } moduleclass = 'system' diff --git a/easybuild/easyconfigs/e/eudev/eudev-3.1.5-intel-2015b.eb b/easybuild/easyconfigs/e/eudev/eudev-3.1.5-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..b58e614820434dcbbf1c33af0336ee4d0e5c4b33 --- /dev/null +++ b/easybuild/easyconfigs/e/eudev/eudev-3.1.5-intel-2015b.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'eudev' +version = '3.1.5' + +homepage = 'https://wiki.gentoo.org/wiki/Project:Eudev' +description = """eudev is a fork of systemd-udev with the goal of obtaining + better compatibility with existing software such as + OpenRC and Upstart, older kernels, various toolchains + and anything else required by users and various distributions.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'cstd': 'c99'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://dev.gentoo.org/~blueness/%(name)s/'] +patches = ['%(name)s-3.1.2_pre-2.6.34_kernel.patch'] + +builddependencies = [ + ('gperf', '3.0.4'), +] + +osdependencies = [('kernel-headers', 'linux-libc-dev')] + +configopts = '--disable-blkid --disable-selinux --disable-gudev --disable-manpages ' +runtest = 'check' + +sanity_check_paths = { + 'files': ['bin/udevadm', 'include/libudev.h', 'include/udev.h', 'lib/libudev.so.1'], + 'dirs': [], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/e/eudev/eudev-3.1.5-intel-2016a.eb b/easybuild/easyconfigs/e/eudev/eudev-3.1.5-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..8da9fd6afaf85b866741dd4f0a8b8dcc99fbbea3 --- /dev/null +++ b/easybuild/easyconfigs/e/eudev/eudev-3.1.5-intel-2016a.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'eudev' +version = '3.1.5' + +homepage = 'https://wiki.gentoo.org/wiki/Project:Eudev' +description = """eudev is a fork of systemd-udev with the goal of obtaining + better compatibility with existing software such as + OpenRC and Upstart, older kernels, various toolchains + and anything else required by users and various distributions.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'cstd': 'c99'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://dev.gentoo.org/~blueness/%(name)s/'] +patches = ['%(name)s-3.1.2_pre-2.6.34_kernel.patch'] + +builddependencies = [ + ('gperf', '3.0.4'), +] + +osdependencies = [('kernel-headers', 'linux-libc-dev')] + +configopts = '--disable-blkid --disable-selinux --disable-gudev --disable-manpages ' +runtest = 'check' + +sanity_check_paths = { + 'files': ['bin/udevadm', 'include/libudev.h', 'include/udev.h', 'lib/libudev.so.1'], + 'dirs': [], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2015b.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..f7e3a65441f07bc1ba6eb78b8e60bbf6197a68de --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-foss-2015b.eb @@ -0,0 +1,16 @@ +easyblock = 'ConfigureMake' + +name = 'expat' +version = '2.1.0' + +homepage = 'http://expat.sourceforge.net/' +description = """Expat is an XML parser library written in C. It is a stream-oriented parser in which an application + registers handlers for things the parser might find in the XML document (like start tags)""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2016a.eb b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..b0bbe713ec6cba35f360ce716231f48e77120441 --- /dev/null +++ b/easybuild/easyconfigs/e/expat/expat-2.1.0-intel-2016a.eb @@ -0,0 +1,16 @@ +easyblock = 'ConfigureMake' + +name = 'expat' +version = '2.1.0' + +homepage = 'http://expat.sourceforge.net/' +description = """Expat is an XML parser library written in C. It is a stream-oriented parser in which an application + registers handlers for things the parser might find in the XML document (like start tags)""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [SOURCEFORGE_SOURCE] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-goolf-1.4.10.eb index f7530e1017df2bbc7944b4a9fab649b370f1699b..c1501d5c82174ed3f0a01619d50c7a1937d58ec9 100644 --- a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-goolf-1.4.10.eb @@ -6,7 +6,7 @@ # License:: MIT/GPL # ## -easyblock='MakeCp' +easyblock = 'MakeCp' name = "FASTA" version = "36.3.5e" @@ -28,8 +28,8 @@ files_to_copy = ["bin", "conf", "data", "doc", "FASTA_LIST", "misc", "README", " sanity_check_paths = { 'files': ["FASTA_LIST", "README"] + ['bin/%s' % x for x in ['lav2svg', 'lav2ps', 'map_db']] + ['bin/%s%%(version_major)s' % x for x in ['fasta', 'fastm', 'fastx', 'ggsearch', 'lalign', 'tfastf', - 'tfasts', 'tfasty', 'fastf', 'fasts', 'fasty', 'glsearch', - 'ssearch', 'tfastm', 'tfastx']], + 'tfasts', 'tfasty', 'fastf', 'fasts', 'fasty', 'glsearch', + 'ssearch', 'tfastm', 'tfastx']], 'dirs': ["conf", "data", "doc", "misc", "seq", "sql", "test"] } diff --git a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-ictce-5.3.0.eb index 8f618661801a697f9e7eb70fc3e864647d5a54b5..6b9a39e112c82c97d32a43476cd3a13a88f5a6cc 100644 --- a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.5e-ictce-5.3.0.eb @@ -6,7 +6,7 @@ # License:: MIT/GPL # ## -easyblock='MakeCp' +easyblock = 'MakeCp' name = "FASTA" version = "36.3.5e" @@ -28,8 +28,8 @@ files_to_copy = ["bin", "conf", "data", "doc", "FASTA_LIST", "misc", "README", " sanity_check_paths = { 'files': ["FASTA_LIST", "README"] + ['bin/%s' % x for x in ['lav2svg', 'lav2ps', 'map_db']] + ['bin/%s%%(version_major)s' % x for x in ['fasta', 'fastm', 'fastx', 'ggsearch', 'lalign', 'tfastf', - 'tfasts', 'tfasty', 'fastf', 'fasts', 'fasty', 'glsearch', - 'ssearch', 'tfastm', 'tfastx']], + 'tfasts', 'tfasty', 'fastf', 'fasts', 'fasty', 'glsearch', + 'ssearch', 'tfastm', 'tfastx']], 'dirs': ["conf", "data", "doc", "misc", "seq", "sql", "test"] } diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb index ce824a5e5672c3ea52bc3bc3246159ab0b2adec7..4bda1588f1b51881cd4f32756c460216c09e9b30 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goalf-1.1.0-no-OFED.eb @@ -26,20 +26,20 @@ altname = '_'.join(name.split('-')).lower() sources = ['%s-%s.tar.bz2' % (altname, version)] source_urls = ['http://hannonlab.cshl.edu/%s' % altname] -dependencies = [('libgtextutils', '0.6.1')]; +dependencies = [('libgtextutils', '0.6.1')] sanity_check_paths = { - 'files': ['bin/fastx_%s' % x for x in ['clipper', 'trimmer', 'quality_stats', - 'artifacts_filter', 'reverse_complement', - 'collapser', 'uncollapser', 'renamer', - 'barcode_splitter.pl', 'nucleotide_distribution_graph.sh', - 'nucleotide_distribution_line_graph.sh']] + - ['bin/fasta_%s' % x for x in ['clipping_histogram.pl', 'formatter', - 'nucleotide_changer']] + - ['bin/fastq_%s' % x for x in ['quality_boxplot_graph.sh', 'quality_converter', - 'to_fasta', 'quality_filter', 'quality_trimmer', - 'masker']], - 'dirs': ['.'] - } + 'files': ['bin/fastx_%s' % x for x in ['clipper', 'trimmer', 'quality_stats', + 'artifacts_filter', 'reverse_complement', + 'collapser', 'uncollapser', 'renamer', + 'barcode_splitter.pl', 'nucleotide_distribution_graph.sh', + 'nucleotide_distribution_line_graph.sh']] + + ['bin/fasta_%s' % x for x in ['clipping_histogram.pl', 'formatter', + 'nucleotide_changer']] + + ['bin/fastq_%s' % x for x in ['quality_boxplot_graph.sh', 'quality_converter', + 'to_fasta', 'quality_filter', 'quality_trimmer', + 'masker']], + 'dirs': ['.'] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb index d68850c2976f781e78d0d3792f8f1ce696bca366..3b0992eef6445201ad66f140bd27c6c6a60bdf6c 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-goolf-1.4.10.eb @@ -26,20 +26,20 @@ altname = '_'.join(name.split('-')).lower() sources = ['%s-%s.tar.bz2' % (altname, version)] source_urls = ['http://hannonlab.cshl.edu/%s' % altname] -dependencies = [('libgtextutils', '0.6.1')]; +dependencies = [('libgtextutils', '0.6.1')] sanity_check_paths = { - 'files': ['bin/fastx_%s' % x for x in ['clipper', 'trimmer', 'quality_stats', - 'artifacts_filter', 'reverse_complement', - 'collapser', 'uncollapser', 'renamer', - 'barcode_splitter.pl', 'nucleotide_distribution_graph.sh', - 'nucleotide_distribution_line_graph.sh']] + - ['bin/fasta_%s' % x for x in ['clipping_histogram.pl', 'formatter', - 'nucleotide_changer']] + - ['bin/fastq_%s' % x for x in ['quality_boxplot_graph.sh', 'quality_converter', - 'to_fasta', 'quality_filter', 'quality_trimmer', - 'masker']], - 'dirs': ['.'] - } + 'files': ['bin/fastx_%s' % x for x in ['clipper', 'trimmer', 'quality_stats', + 'artifacts_filter', 'reverse_complement', + 'collapser', 'uncollapser', 'renamer', + 'barcode_splitter.pl', 'nucleotide_distribution_graph.sh', + 'nucleotide_distribution_line_graph.sh']] + + ['bin/fasta_%s' % x for x in ['clipping_histogram.pl', 'formatter', + 'nucleotide_changer']] + + ['bin/fastq_%s' % x for x in ['quality_boxplot_graph.sh', 'quality_converter', + 'to_fasta', 'quality_filter', 'quality_trimmer', + 'masker']], + 'dirs': ['.'] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb index c0fdac7c353b30530be2b3b72871964c96c7e302..b9a9acd1bf62f3e677559576d2067fb1876ad009 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-4.0.6.eb @@ -26,22 +26,22 @@ altname = '_'.join(name.split('-')).lower() sources = ['%s-%s.tar.bz2' % (altname, version)] source_urls = ['http://hannonlab.cshl.edu/%s' % altname] -dependencies = [('libgtextutils', '0.6.1')]; +dependencies = [('libgtextutils', '0.6.1')] configopts = '--disable-wall' # avoid use of -Werror sanity_check_paths = { - 'files': ['bin/fastx_%s' % x for x in ['clipper', 'trimmer', 'quality_stats', - 'artifacts_filter', 'reverse_complement', - 'collapser', 'uncollapser', 'renamer', - 'barcode_splitter.pl', 'nucleotide_distribution_graph.sh', - 'nucleotide_distribution_line_graph.sh']] + - ['bin/fasta_%s' % x for x in ['clipping_histogram.pl', 'formatter', - 'nucleotide_changer']] + - ['bin/fastq_%s' % x for x in ['quality_boxplot_graph.sh', 'quality_converter', - 'to_fasta', 'quality_filter', 'quality_trimmer', - 'masker']], - 'dirs': ['.'] - } + 'files': ['bin/fastx_%s' % x for x in ['clipper', 'trimmer', 'quality_stats', + 'artifacts_filter', 'reverse_complement', + 'collapser', 'uncollapser', 'renamer', + 'barcode_splitter.pl', 'nucleotide_distribution_graph.sh', + 'nucleotide_distribution_line_graph.sh']] + + ['bin/fasta_%s' % x for x in ['clipping_histogram.pl', 'formatter', + 'nucleotide_changer']] + + ['bin/fastq_%s' % x for x in ['quality_boxplot_graph.sh', 'quality_converter', + 'to_fasta', 'quality_filter', 'quality_trimmer', + 'masker']], + 'dirs': ['.'] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb index f7fa06667c04b2374bd73050f6df140db4c51873..1f15e3521420f7dcc538dc480591d7ad6ff7717c 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.13.2-ictce-5.3.0.eb @@ -27,22 +27,22 @@ altname = '_'.join(name.split('-')).lower() sources = ['%s-%s.tar.bz2' % (altname, version)] source_urls = ['http://hannonlab.cshl.edu/%s' % altname] -dependencies = [('libgtextutils', '0.6.1')]; +dependencies = [('libgtextutils', '0.6.1')] configopts = '--disable-wall' # avoid use of -Werror sanity_check_paths = { - 'files': ['bin/fastx_%s' % x for x in ['clipper', 'trimmer', 'quality_stats', - 'artifacts_filter', 'reverse_complement', - 'collapser', 'uncollapser', 'renamer', - 'barcode_splitter.pl', 'nucleotide_distribution_graph.sh', - 'nucleotide_distribution_line_graph.sh']] + - ['bin/fasta_%s' % x for x in ['clipping_histogram.pl', 'formatter', - 'nucleotide_changer']] + - ['bin/fastq_%s' % x for x in ['quality_boxplot_graph.sh', 'quality_converter', - 'to_fasta', 'quality_filter', 'quality_trimmer', - 'masker']], - 'dirs': ['.'] - } + 'files': ['bin/fastx_%s' % x for x in ['clipper', 'trimmer', 'quality_stats', + 'artifacts_filter', 'reverse_complement', + 'collapser', 'uncollapser', 'renamer', + 'barcode_splitter.pl', 'nucleotide_distribution_graph.sh', + 'nucleotide_distribution_line_graph.sh']] + + ['bin/fasta_%s' % x for x in ['clipping_histogram.pl', 'formatter', + 'nucleotide_changer']] + + ['bin/fastq_%s' % x for x in ['quality_boxplot_graph.sh', 'quality_converter', + 'to_fasta', 'quality_filter', 'quality_trimmer', + 'masker']], + 'dirs': ['.'] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2015b.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..000e1a89b77047bae4cafdda81e85262718734db --- /dev/null +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-foss-2015b.eb @@ -0,0 +1,44 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'ConfigureMake' + +name = 'FASTX-Toolkit' +version = '0.0.14' + +homepage = 'http://hannonlab.cshl.edu/fastx_toolkit/' +description = """The FASTX-Toolkit is a collection of command line tools for + Short-Reads FASTA/FASTQ files preprocessing.""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['https://github.com/agordon/fastx_toolkit/releases/download/%(version)s'] +sources = ['fastx_toolkit-%(version)s.tar.bz2'] + +builddependencies = [('libgtextutils', '0.7')] + +sanity_check_paths = { + 'files': + ['bin/fastx_%s' % x for x in + ['clipper', 'trimmer', 'quality_stats', 'artifacts_filter', 'reverse_complement', + 'collapser', 'uncollapser', 'renamer', 'barcode_splitter.pl', 'nucleotide_distribution_graph.sh', + 'nucleotide_distribution_line_graph.sh']] + + ['bin/fasta_%s' % x for x in + ['clipping_histogram.pl', 'formatter', 'nucleotide_changer']] + + ['bin/fastq_%s' % x for x in + ['quality_boxplot_graph.sh', 'quality_converter', 'to_fasta', 'quality_filter', + 'quality_trimmer', 'masker']], + 'dirs': ['.'] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb index 96c112929039c24581b53fe6668fdcb843b9b354..1b0419e8b85477b7e540ff61c56b7f005cc125d9 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-goolf-1.4.10.eb @@ -22,24 +22,24 @@ description = """The FASTX-Toolkit is a collection of command line tools for toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True} -altname = name.lower().replace('-','_') +altname = name.lower().replace('-', '_') source_urls = ['https://github.com/agordon/fastx_toolkit/releases/download/%(version)s'] sources = ['%s-%%(version)s.tar.bz2' % altname] -dependencies = [('libgtextutils', '0.6.1')]; +dependencies = [('libgtextutils', '0.6.1')] sanity_check_paths = { - 'files': - ['bin/fastx_%s' % x for x in + 'files': + ['bin/fastx_%s' % x for x in ['clipper', 'trimmer', 'quality_stats', 'artifacts_filter', 'reverse_complement', - 'collapser', 'uncollapser', 'renamer', 'barcode_splitter.pl', 'nucleotide_distribution_graph.sh', - 'nucleotide_distribution_line_graph.sh']] + - ['bin/fasta_%s' % x for x in + 'collapser', 'uncollapser', 'renamer', 'barcode_splitter.pl', 'nucleotide_distribution_graph.sh', + 'nucleotide_distribution_line_graph.sh']] + + ['bin/fasta_%s' % x for x in ['clipping_histogram.pl', 'formatter', 'nucleotide_changer']] + - ['bin/fastq_%s' % x for x in - ['quality_boxplot_graph.sh', 'quality_converter', 'to_fasta', 'quality_filter', - 'quality_trimmer', 'masker']], + ['bin/fastq_%s' % x for x in + ['quality_boxplot_graph.sh', 'quality_converter', 'to_fasta', 'quality_filter', + 'quality_trimmer', 'masker']], 'dirs': ['.'] - } +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-intel-2015a.eb b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-intel-2015a.eb index 13d9d1cb72c6032c4494d7b048c85486eb2bd9a8..88eedbe24881816c0b8e6ff721634231ed6fe147 100644 --- a/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-intel-2015a.eb +++ b/easybuild/easyconfigs/f/FASTX-Toolkit/FASTX-Toolkit-0.0.14-intel-2015a.eb @@ -22,24 +22,24 @@ description = """The FASTX-Toolkit is a collection of command line tools for toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True} -altname = name.lower().replace('-','_') +altname = name.lower().replace('-', '_') source_urls = ['https://github.com/agordon/fastx_toolkit/releases/download/%(version)s'] sources = ['%s-%%(version)s.tar.bz2' % altname] -dependencies = [('libgtextutils', '0.6.1')]; +dependencies = [('libgtextutils', '0.6.1')] sanity_check_paths = { - 'files': - ['bin/fastx_%s' % x for x in + 'files': + ['bin/fastx_%s' % x for x in ['clipper', 'trimmer', 'quality_stats', 'artifacts_filter', 'reverse_complement', - 'collapser', 'uncollapser', 'renamer', 'barcode_splitter.pl', 'nucleotide_distribution_graph.sh', - 'nucleotide_distribution_line_graph.sh']] + - ['bin/fasta_%s' % x for x in + 'collapser', 'uncollapser', 'renamer', 'barcode_splitter.pl', 'nucleotide_distribution_graph.sh', + 'nucleotide_distribution_line_graph.sh']] + + ['bin/fasta_%s' % x for x in ['clipping_histogram.pl', 'formatter', 'nucleotide_changer']] + - ['bin/fastq_%s' % x for x in - ['quality_boxplot_graph.sh', 'quality_converter', 'to_fasta', 'quality_filter', - 'quality_trimmer', 'masker']], + ['bin/fastq_%s' % x for x in + ['quality_boxplot_graph.sh', 'quality_converter', 'to_fasta', 'quality_filter', + 'quality_trimmer', 'masker']], 'dirs': ['.'] - } +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/FDS/FDS-6.0.1-no-OFED.eb b/easybuild/easyconfigs/f/FDS/FDS-6.0.1-no-OFED.eb index f0c72251831e710652fe08705ced7bfaf8f9237b..f79371e678dfa0efe7f9d9895c3f0036d249f5c2 100644 --- a/easybuild/easyconfigs/f/FDS/FDS-6.0.1-no-OFED.eb +++ b/easybuild/easyconfigs/f/FDS/FDS-6.0.1-no-OFED.eb @@ -9,14 +9,14 @@ description = """ Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and heat transport from fires. """ -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} # download .sh from https://bintray.com/nist-fire-research/releases/FDS-SMV/6.0.1/view/files to create tarball sources = ['FDS_6.0.1-SMV_6.1.5_linux64.tar.gz'] dependencies = [('OpenMPI', '1.6.5-GCC-4.8.2-no-OFED')] -skipsteps= ['configure', 'build'] +skipsteps = ['configure', 'build'] sanity_check_paths = { 'files': ['bin/fds', 'bin/fds_mpi'], diff --git a/easybuild/easyconfigs/f/FFC/FFC-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/f/FFC/FFC-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb index e65ba501f924765cc31e543684946995819a5e43..6a8af569fc21cb9c7d509b64cb3a1a9aa6d496cf 100644 --- a/easybuild/easyconfigs/f/FFC/FFC-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/f/FFC/FFC-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -20,16 +20,16 @@ pythonshortversion = ".".join(pythonversion.split(".")[:-1]) versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('UFL', '1.0.0', versionsuffix), - ('FIAT', '1.0.0', versionsuffix), - ('UFC', '2.0.5', versionsuffix), - ('Viper', '1.0.0', versionsuffix), - ] + (python, pythonversion), + ('UFL', '1.0.0', versionsuffix), + ('FIAT', '1.0.0', versionsuffix), + ('UFC', '2.0.5', versionsuffix), + ('Viper', '1.0.0', versionsuffix), +] sanity_check_paths = { - 'files': ['bin/ffc'], - 'dirs': ['lib/python%s/site-packages/ffc' % pythonshortversion] - } + 'files': ['bin/ffc'], + 'dirs': ['lib/python%s/site-packages/ffc' % pythonshortversion] +} moduleclass = 'math' diff --git a/easybuild/easyconfigs/f/FFC/FFC-1.0.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/f/FFC/FFC-1.0.0-goolf-1.4.10-Python-2.7.3.eb index f26919582f539a74a3a16dce8321b830a794b2a6..f3d91879f4c9c1e64f2469d1f7b62d36b77e5a94 100644 --- a/easybuild/easyconfigs/f/FFC/FFC-1.0.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/f/FFC/FFC-1.0.0-goolf-1.4.10-Python-2.7.3.eb @@ -20,16 +20,16 @@ pythonshortversion = ".".join(pythonversion.split(".")[:-1]) versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('UFL', '1.0.0', versionsuffix), - ('FIAT', '1.0.0', versionsuffix), - ('UFC', '2.0.5', versionsuffix), - ('Viper', '1.0.0', versionsuffix), - ] + (python, pythonversion), + ('UFL', '1.0.0', versionsuffix), + ('FIAT', '1.0.0', versionsuffix), + ('UFC', '2.0.5', versionsuffix), + ('Viper', '1.0.0', versionsuffix), +] sanity_check_paths = { - 'files': ['bin/ffc'], - 'dirs': ['lib/python%s/site-packages/ffc' % pythonshortversion] - } + 'files': ['bin/ffc'], + 'dirs': ['lib/python%s/site-packages/ffc' % pythonshortversion] +} moduleclass = 'math' diff --git a/easybuild/easyconfigs/f/FFC/FFC-1.0.0-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/f/FFC/FFC-1.0.0-ictce-4.0.6-Python-2.7.3.eb index 97fb1dceaa06e4eef522d7ac285f8e62a94e880a..aff35de683da191fdf9d5dbb68fe56b883cde010 100644 --- a/easybuild/easyconfigs/f/FFC/FFC-1.0.0-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/f/FFC/FFC-1.0.0-ictce-4.0.6-Python-2.7.3.eb @@ -20,16 +20,16 @@ pythonshortversion = ".".join(pythonversion.split(".")[:-1]) versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('UFL', '1.0.0', versionsuffix), - ('FIAT', '1.0.0', versionsuffix), - ('UFC', '2.0.5', versionsuffix), - ('Viper', '1.0.0', versionsuffix), - ] + (python, pythonversion), + ('UFL', '1.0.0', versionsuffix), + ('FIAT', '1.0.0', versionsuffix), + ('UFC', '2.0.5', versionsuffix), + ('Viper', '1.0.0', versionsuffix), +] sanity_check_paths = { - 'files': ['bin/ffc'], - 'dirs': ['lib/python%s/site-packages/ffc' % pythonshortversion] - } + 'files': ['bin/ffc'], + 'dirs': ['lib/python%s/site-packages/ffc' % pythonshortversion] +} moduleclass = 'math' diff --git a/easybuild/easyconfigs/f/FFC/FFC-1.0.0-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/f/FFC/FFC-1.0.0-ictce-5.3.0-Python-2.7.3.eb index fbc743734d1cd5376bdba180af3c97e9c9081fd3..646f52f87403d1407a48d4c268abc80f3684fbf3 100644 --- a/easybuild/easyconfigs/f/FFC/FFC-1.0.0-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/f/FFC/FFC-1.0.0-ictce-5.3.0-Python-2.7.3.eb @@ -21,16 +21,16 @@ pythonshortversion = ".".join(pythonversion.split(".")[:-1]) versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('UFL', '1.0.0', versionsuffix), - ('FIAT', '1.0.0', versionsuffix), - ('UFC', '2.0.5', versionsuffix), - ('Viper', '1.0.0', versionsuffix), - ] + (python, pythonversion), + ('UFL', '1.0.0', versionsuffix), + ('FIAT', '1.0.0', versionsuffix), + ('UFC', '2.0.5', versionsuffix), + ('Viper', '1.0.0', versionsuffix), +] sanity_check_paths = { - 'files': ['bin/ffc'], - 'dirs': ['lib/python%s/site-packages/ffc' % pythonshortversion] - } + 'files': ['bin/ffc'], + 'dirs': ['lib/python%s/site-packages/ffc' % pythonshortversion] +} moduleclass = 'math' diff --git a/easybuild/easyconfigs/f/FFC/FFC-1.6.0-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/f/FFC/FFC-1.6.0-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..8e3e690feb1adec16e6ab3f043610d3229d01198 --- /dev/null +++ b/easybuild/easyconfigs/f/FFC/FFC-1.6.0-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,34 @@ +easyblock = "PythonPackage" + +name = 'FFC' +version = '1.6.0' + +homepage = 'https://bitbucket.org/fenics-project/ffc' +description = """FEniCS Form Compiler (FFC) works as a compiler for multilinear forms by generating + code (C++) for the evaluation of a multilinear form given in mathematical notation.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['https://bitbucket.org/fenics-project/ffc/downloads/'] +sources = [SOURCELOWER_TAR_GZ] + +pyver = '2.7.11' +versionsuffix = '-Python-%s' % pyver + +builddependencies = [ + ('SWIG', '3.0.8', versionsuffix), +] +dependencies = [ + ('Python', pyver), + ('UFL', version, versionsuffix), + ('FIAT', version, versionsuffix), + ('Instant', version, versionsuffix), +] + +pyshortver = '.'.join(pyver.split('.')[:2]) +sanity_check_paths = { + 'files': ['bin/ffc'], + 'dirs': ['lib/python%s/site-packages' % pyshortver] +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-gompi-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-gompi-1.1.0-no-OFED.eb index 207690907c36140eecd03841fc8d3d3a2c1096bb..2e1dfdd8af153be258369b39472db6f725e07c07 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-gompi-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-gompi-1.1.0-no-OFED.eb @@ -23,7 +23,8 @@ configopts = [ sanity_check_paths = { 'files': ['include/%sfftw%s.h' % (x, y) for x in ['d', 'dr', 's', 'sr'] for y in ['', '_mpi', '_threads']] + ['lib/lib%sfftw%s.a' % (x, y) for x in ['d', 'dr', 's', 'sr'] for y in ['', '_mpi', '_threads']] + - ['lib/lib%sfftw%s.%s' % (x, y, SHLIB_EXT) for x in ['d', 'dr', 's', 'sr'] for y in ['', '_mpi', '_threads']], + ['lib/lib%sfftw%s.%s' % (x, y, SHLIB_EXT) for x in ['d', 'dr', 's', 'sr'] + for y in ['', '_mpi', '_threads']], 'dirs': [], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.3.0.eb index 27849ede43f1d48b08e69fd0cdf5684767e14b7e..4dafd1540fabe39f6b4e6fa4318b216e2dddc173 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.3.0.eb @@ -23,7 +23,8 @@ configopts = [ sanity_check_paths = { 'files': ['include/%sfftw%s.h' % (x, y) for x in ['d', 'dr', 's', 'sr'] for y in ['', '_mpi', '_threads']] + ['lib/lib%sfftw%s.a' % (x, y) for x in ['d', 'dr', 's', 'sr'] for y in ['', '_mpi', '_threads']] + - ['lib/lib%sfftw%s.%s' % (x, y, SHLIB_EXT) for x in ['d', 'dr', 's', 'sr'] for y in ['', '_mpi', '_threads']], + ['lib/lib%sfftw%s.%s' % (x, y, SHLIB_EXT) for x in ['d', 'dr', 's', 'sr'] + for y in ['', '_mpi', '_threads']], 'dirs': [], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.5.0.eb b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.5.0.eb index a551eedc1d1362dcd3eebbc69e01db44dcf6b981..e665c5c10186cc3f3df9e7d79304f217d6b0df3b 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-2.1.5-ictce-5.5.0.eb @@ -23,7 +23,8 @@ configopts = [ sanity_check_paths = { 'files': ['include/%sfftw%s.h' % (x, y) for x in ['d', 'dr', 's', 'sr'] for y in ['', '_mpi', '_threads']] + ['lib/lib%sfftw%s.a' % (x, y) for x in ['d', 'dr', 's', 'sr'] for y in ['', '_mpi', '_threads']] + - ['lib/lib%sfftw%s.%s' % (x, y, SHLIB_EXT) for x in ['d', 'dr', 's', 'sr'] for y in ['', '_mpi', '_threads']], + ['lib/lib%sfftw%s.%s' % (x, y, SHLIB_EXT) for x in ['d', 'dr', 's', 'sr'] + for y in ['', '_mpi', '_threads']], 'dirs': [], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb index df746888b87a52a5be779e373d3deeeec920b226..0870e0a4fd8f02803e332431068a5160e2add8ce 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.1-gompi-1.1.0-no-OFED.eb @@ -26,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb index f3605b72054e5cb912c6d1dbc0a659ace00e4940..39962ff9f0d26a697f9b60d79ab508113d4ea158 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.2-gmvapich2-1.7.9a2.eb @@ -26,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich-1.4.8.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich-1.4.8.eb index 34bdcce1b8be37ef6bd0664d7c9c418eafdb5975..50af5b9be23f3460e4e8885c30e30abbee4894d9 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich-1.4.8.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmpich-1.4.8.eb @@ -26,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb index dbbb079aaf6b50d3f5c9a9aad9b9365705bb3258..a179659dbf75e17318bb60f31dc69bb781b1cb47 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12.eb @@ -26,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb index 7c08b5de116fcb5c696778d2d704047c1aa55580..a5ea76020c20cf7690a7a34959309804a36832b2 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gmvapich2-1.7.12rc1.eb @@ -27,8 +27,8 @@ sanity_check_paths = { 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb index b7323c4cfc305de347b4b27c34db20e446d0906a..cf777562eead552c44721ec4c0e76aeb3b973cd1 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.3.12.eb @@ -27,8 +27,8 @@ sanity_check_paths = { 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10-no-OFED.eb index b4a9a90a0141c0d7faec71f1a95e0c156f1377ed..1c3d9dac4d36c38b4f7971c0f4804ff946c3e62a 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10-no-OFED.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10-no-OFED.eb @@ -26,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb index bc93d09c52e675559fe8ed5f5e3b7ada33b0514f..bc9593354f40faa63a3a63f32c4344f833224af7 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.4.10.eb @@ -26,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb index 6ce64fb09e1ca179198f7c46522bdc0b097c9504..ef28bb596b7757efe2b54fdefc493b7a68bbfd2a 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12-no-OFED.eb @@ -26,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb index a07a8a5b7a5c19e9f1874fd97dd9a57576cec4d6..a66c54abe404efbb2503f6c385f1c510fa833c17 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.5.12.eb @@ -26,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb index 9273c85cd6cd9628ba6d1c8fdebb7416e5d241fe..43a89950f17fe0185f651824ce71a49a9d0e4b9d 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompi-1.6.10.eb @@ -26,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb index 23271fb82e149d002178af3bf884255d5c36b0a9..52dc0f06628694cc75e78dd54183863540796560 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-gompic-2.6.10.eb @@ -26,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb index 847312fb86b5d3d8520470c53cfcfbc4de5bdce4..b4152bae556a2f38045ba5cc46203c2d72ccb9ea 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-4.1.13-single.eb @@ -14,10 +14,10 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -## single precision +# single precision configopts = "--enable-sse --enable-single" -# the MPI opts from FFTW2 are valid options but unused until FFTW3.3 +# the MPI opts from FFTW2 are valid options but unused until FFTW3.3 configopts += " --enable-threads --enable-openmp --with-pic --enable-mpi" sanity_check_paths = { diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb index 8d6deb8033452fad932cd5e5f8919a9d87f5249d..c3d56eb83cbafbf0ae8394e902df397073a88652 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.2.0-single.eb @@ -14,10 +14,10 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -## single precision +# single precision configopts = "--enable-sse --enable-single" -# the MPI opts from FFTW2 are valid options but unused until FFTW3.3 +# the MPI opts from FFTW2 are valid options but unused until FFTW3.3 configopts += " --enable-threads --enable-openmp --with-pic --enable-mpi" sanity_check_paths = { diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb index 4e798279db2974ac15904158c56b42d489a08df0..5755a3492e5935f3aa259981da39e50ee8390725 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-ictce-5.3.0-single.eb @@ -14,10 +14,10 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -## single precision +# single precision configopts = "--enable-sse --enable-single" -# the MPI opts from FFTW2 are valid options but unused until FFTW3.3 +# the MPI opts from FFTW2 are valid options but unused until FFTW3.3 configopts += " --enable-threads --enable-openmp --with-pic --enable-mpi" sanity_check_paths = { diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb index cfa438bf8f26c45cb6b50ea87b2770fad6823453..614cce8c967d53231f89acbf23f48113b7d7911e 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.3-iomkl-4.6.13-single.eb @@ -14,10 +14,10 @@ toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] -## single precision +# single precision configopts = "--enable-sse --enable-single" -# the MPI opts from FFTW2 are valid options but unused until FFTW3.3 +# the MPI opts from FFTW2 are valid options but unused until FFTW3.3 configopts += " --enable-threads --enable-openmp --with-pic --enable-mpi" preconfigopts = 'OMPI_MPICC=icc ' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.12.eb index 7a9d4c279e1cf7f944e8081f6971de24fec2e3e5..1c30e5053405fa3ef7298291a1bc8188f5a9a6f6 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.12.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gmvapich2-1.7.12.eb @@ -26,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14-no-OFED.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14-no-OFED.eb index 128daff670844540be0503e56343b05da557a4a8..38fbcdb5bcc558df3b65e31149958eeecb3697f6 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14-no-OFED.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14-no-OFED.eb @@ -26,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14.eb index 31bdfdd9569dffa5ca7179028779698f9348a016..0e6bf98a4890f08cddce390d9823ba0f745daf89 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.14.eb @@ -26,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.16.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.16.eb index 6ae444ae025f221e3e5c742284084a0c5aabf013..34e8f524fbb1fbacbe340cfc5e0a2421ac28c521 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.16.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-1.5.16.eb @@ -26,8 +26,8 @@ sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + - ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + - ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2016a.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..ea1354d72d75cb79a468c33dc38a086af99f988e --- /dev/null +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gompi-2016a.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'FFTW' +version = '3.3.4' + +homepage = 'http://www.fftw.org' +description = """FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) + in one or more dimensions, of arbitrary input size, and of both real and complex data.""" + +toolchain = {'name': 'gompi', 'version': '2016a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [homepage] + +common_configopts = "--enable-threads --enable-openmp --with-pic" + +configopts = [ + common_configopts + " --enable-single --enable-sse2 --enable-mpi", + common_configopts + " --enable-long-double --enable-mpi", + common_configopts + " --enable-quad-precision", + common_configopts + " --enable-sse2 --enable-mpi", # default as last +] + +sanity_check_paths = { + 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', + '.h', 'l-mpi.f03', 'l.f03', 'q.f03']] + + ['lib/libfftw3%s%s.a' % (x, y) for x in ['', 'f', 'l'] for y in ['', '_mpi', '_omp', '_threads']] + + ['lib/libfftw3q.a', 'lib/libfftw3q_omp.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gpsmpi-2014.12.eb b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gpsmpi-2014.12.eb index cb01772a4f89815dd80dabaefe658db6d327daed..14eb6c4917d3c7f86e89778bc58dd3140a23c13c 100644 --- a/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gpsmpi-2014.12.eb +++ b/easybuild/easyconfigs/f/FFTW/FFTW-3.3.4-gpsmpi-2014.12.eb @@ -22,7 +22,6 @@ configopts = [ ] - sanity_check_paths = { 'files': ['bin/fftw%s' % x for x in ['-wisdom', '-wisdom-to-conf', 'f-wisdom', 'l-wisdom', 'q-wisdom']] + ['include/fftw3%s' % x for x in ['-mpi.f03', '-mpi.h', '.f', '.f03', @@ -33,4 +32,3 @@ sanity_check_paths = { } moduleclass = 'numlib' - diff --git a/easybuild/easyconfigs/f/FFmpeg/FFmpeg-0.10.16-gimkl-2.11.5.eb b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-0.10.16-gimkl-2.11.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..7c1be39c96bbfb6a533f98db5b26b9347fe0c104 --- /dev/null +++ b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-0.10.16-gimkl-2.11.5.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'FFmpeg' +version = '0.10.16' + +homepage = 'https://www.ffmpeg.org/' +description = """A complete, cross-platform solution to record, convert and stream audio and video.""" + +toolchain = {'name': 'gimkl', 'version': '2.11.5'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ffmpeg.org/releases/'] + +dependencies = [ + ('NASM', '2.11.08'), + ('zlib', '1.2.8'), + ('x264', '20160114'), +] + +configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX" ' +configopts += '--enable-libx264' + +sanity_check_paths = { + 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server']] + + ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc', + 'swresample', 'swscale', 'avutil'] for y in ['so', 'a']], + 'dirs': ['include'] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/FFmpeg/FFmpeg-0.10.16-intel-2016a.eb b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-0.10.16-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..3e71d0c50e397537dd12a800a5347be195714c09 --- /dev/null +++ b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-0.10.16-intel-2016a.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'FFmpeg' +version = '0.10.16' + +homepage = 'https://www.ffmpeg.org/' +description = """A complete, cross-platform solution to record, convert and stream audio and video.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +# disable use of -xHOST, since it can trigger an internal compiler error in this case +toolchainopts = {'optarch': False} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ffmpeg.org/releases/'] + +dependencies = [ + ('NASM', '2.11.08'), + ('zlib', '1.2.8'), + ('x264', '20160114'), +] + +configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX" ' +configopts += '--enable-libx264' + +sanity_check_paths = { + 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server']] + + ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc', + 'swresample', 'swscale', 'avutil'] for y in ['so', 'a']], + 'dirs': ['include'] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014.06.eb b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.4-intel-2014.06.eb similarity index 88% rename from easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014.06.eb rename to easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.4-intel-2014.06.eb index 36569d20af714fca2d0ff0500931e39465ec8b4a..d1a07765f358829e3d1dcffb86291ce269eeb4d0 100644 --- a/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014.06.eb +++ b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.4-intel-2014.06.eb @@ -1,6 +1,6 @@ easyblock = 'ConfigureMake' -name = 'ffmpeg' +name = 'FFmpeg' version = '2.4' homepage = 'https://www.ffmpeg.org/' @@ -8,7 +8,7 @@ description = """A complete, cross-platform solution to record, convert and stre toolchain = {'name': 'intel', 'version': '2014.06'} -sources = [SOURCE_TAR_BZ2] +sources = [SOURCELOWER_TAR_BZ2] source_urls = ['http://ffmpeg.org/releases/'] configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX"' @@ -19,8 +19,8 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server'] ] + - ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc', + 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server']] + + ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc', 'swresample', 'swscale', 'avutil'] for y in ['so', 'a']], 'dirs': ['include'] } diff --git a/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014b.eb b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.4-intel-2014b.eb similarity index 88% rename from easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014b.eb rename to easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.4-intel-2014b.eb index a9bbbfc3c130aaa2f1edec4c1476b3a1c79a7c9f..2576f9f0ad3c910704c8f8655af24866876d5d25 100644 --- a/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.4-intel-2014b.eb +++ b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.4-intel-2014b.eb @@ -1,6 +1,6 @@ easyblock = 'ConfigureMake' -name = 'ffmpeg' +name = 'FFmpeg' version = '2.4' homepage = 'https://www.ffmpeg.org/' @@ -8,7 +8,7 @@ description = """A complete, cross-platform solution to record, convert and stre toolchain = {'name': 'intel', 'version': '2014b'} -sources = [SOURCE_TAR_BZ2] +sources = [SOURCELOWER_TAR_BZ2] source_urls = ['http://ffmpeg.org/releases/'] configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX"' @@ -19,8 +19,8 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server'] ] + - ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc', + 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server']] + + ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc', 'swresample', 'swscale', 'avutil'] for y in ['so', 'a']], 'dirs': ['include'] } diff --git a/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.4-intel-2015a.eb b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.4-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..2a1ef9245eb885ff59e355395c97084dd41dd8cf --- /dev/null +++ b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.4-intel-2015a.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'FFmpeg' +version = '2.4' + +homepage = 'https://www.ffmpeg.org/' +description = """A complete, cross-platform solution to record, convert and stream audio and video.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ffmpeg.org/releases/'] + +configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX"' + +dependencies = [ + ('NASM', '2.11.05'), + ('zlib', '1.2.8'), +] + +sanity_check_paths = { + 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server']] + + ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc', + 'swresample', 'swscale', 'avutil'] for y in ['so', 'a']], + 'dirs': ['include'] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.8-intel-2015b.eb b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.8-intel-2015b.eb similarity index 94% rename from easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.8-intel-2015b.eb rename to easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.8-intel-2015b.eb index 9493af88c92449efa6d816314b14ac1b9c5a3242..e5bfa0bfd3b4216bd734b7c809b1c2e1a65e4279 100644 --- a/easybuild/easyconfigs/f/ffmpeg/ffmpeg-2.8-intel-2015b.eb +++ b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.8-intel-2015b.eb @@ -1,6 +1,6 @@ easyblock = 'ConfigureMake' -name = 'ffmpeg' +name = 'FFmpeg' version = '2.8' homepage = 'https://www.ffmpeg.org/' @@ -8,7 +8,7 @@ description = """A complete, cross-platform solution to record, convert and stre toolchain = {'name': 'intel', 'version': '2015b'} -sources = [SOURCE_TAR_BZ2] +sources = [SOURCELOWER_TAR_BZ2] source_urls = ['http://ffmpeg.org/releases/'] dependencies = [ @@ -21,7 +21,7 @@ configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enab configopts += '--enable-libx264' sanity_check_paths = { - 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server'] ] + + 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server']] + ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc', 'swresample', 'swscale', 'avutil'] for y in ['so', 'a']], 'dirs': ['include'] diff --git a/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.8.4-foss-2015a.eb b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.8.4-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..ecba492e06bf95118c1196be806f6195c2602f34 --- /dev/null +++ b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.8.4-foss-2015a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'FFmpeg' +version = '2.8.4' + +homepage = 'https://www.ffmpeg.org/' +description = """A complete, cross-platform solution to record, convert and stream audio and video.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ffmpeg.org/releases/'] + +dependencies = [ + ('NASM', '2.11.08'), + ('zlib', '1.2.8'), + ('x264', '20160114'), +] + +configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX" ' +configopts += '--enable-libx264' + +sanity_check_paths = { + 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server']] + + ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc', + 'swresample', 'swscale', 'avutil'] for y in ['so', 'a']], + 'dirs': ['include'] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.8.5-foss-2015a.eb b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.8.5-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..3b5612efcec17969a793569d1b291bec0999c431 --- /dev/null +++ b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.8.5-foss-2015a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'FFmpeg' +version = '2.8.5' + +homepage = 'https://www.ffmpeg.org/' +description = """A complete, cross-platform solution to record, convert and stream audio and video.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ffmpeg.org/releases/'] + +dependencies = [ + ('NASM', '2.11.08'), + ('zlib', '1.2.8'), + ('x264', '20160114'), +] + +configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX" ' +configopts += '--enable-libx264' + +sanity_check_paths = { + 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server']] + + ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc', + 'swresample', 'swscale', 'avutil'] for y in ['so', 'a']], + 'dirs': ['include'] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.8.6-intel-2016a.eb b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.8.6-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..40be8fe314c14e52eef4182c3fc91ac890a1a076 --- /dev/null +++ b/easybuild/easyconfigs/f/FFmpeg/FFmpeg-2.8.6-intel-2016a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'FFmpeg' +version = '2.8.6' + +homepage = 'https://www.ffmpeg.org/' +description = """A complete, cross-platform solution to record, convert and stream audio and video.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ffmpeg.org/releases/'] + +dependencies = [ + ('NASM', '2.11.08'), + ('zlib', '1.2.8'), + ('x264', '20160114'), +] + +configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX" ' +configopts += '--enable-libx264' + +sanity_check_paths = { + 'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server']] + + ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc', + 'swresample', 'swscale', 'avutil'] for y in ['so', 'a']], + 'dirs': ['include'] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/FIAT/FIAT-1.1-ictce-5.2.0-Python-2.7.3.eb b/easybuild/easyconfigs/f/FIAT/FIAT-1.1-ictce-5.2.0-Python-2.7.3.eb index 38a7cbfbd8d8d301fac7a987e1e588bbc71a8a43..7333fc753b6f7d049cc7cca7240ed5c58135863f 100644 --- a/easybuild/easyconfigs/f/FIAT/FIAT-1.1-ictce-5.2.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/f/FIAT/FIAT-1.1-ictce-5.2.0-Python-2.7.3.eb @@ -10,7 +10,9 @@ arbitrary order instances of Jacobi-type quadrature rules on the same element sh toolchain = {'name': 'ictce', 'version': '5.2.0'} -source_urls = ['https://launchpad.net/%(namelower)s/%(version_major_minor)s.x/release-%(version_major_minor)s/+download/'] +source_urls = [ + 'https://launchpad.net/%(namelower)s/%(version_major_minor)s.x/release-%(version_major_minor)s/+download/', +] sources = [SOURCELOWER_TAR_GZ] python = "Python" diff --git a/easybuild/easyconfigs/f/FIAT/FIAT-1.1-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/f/FIAT/FIAT-1.1-ictce-5.3.0-Python-2.7.3.eb index c1e3ad55f7351f41e264b21ce8c1917c4038d846..b09c96da468abeb8421bec62a706a61386661a12 100644 --- a/easybuild/easyconfigs/f/FIAT/FIAT-1.1-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/f/FIAT/FIAT-1.1-ictce-5.3.0-Python-2.7.3.eb @@ -10,7 +10,9 @@ arbitrary order instances of Jacobi-type quadrature rules on the same element sh toolchain = {'name': 'ictce', 'version': '5.3.0'} -source_urls = ['https://launchpad.net/%(namelower)s/%(version_major_minor)s.x/release-%(version_major_minor)s/+download/'] +source_urls = [ + 'https://launchpad.net/%(namelower)s/%(version_major_minor)s.x/release-%(version_major_minor)s/+download/', +] sources = [SOURCELOWER_TAR_GZ] python = "Python" diff --git a/easybuild/easyconfigs/f/FIAT/FIAT-1.1-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/f/FIAT/FIAT-1.1-intel-2014b-Python-2.7.8.eb index 1d1b0eda5c987b4b9982fddde90146090f5a526d..8515a18e690f4c257a53837d82b8c3ef49c10f84 100644 --- a/easybuild/easyconfigs/f/FIAT/FIAT-1.1-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/f/FIAT/FIAT-1.1-intel-2014b-Python-2.7.8.eb @@ -10,7 +10,9 @@ arbitrary order instances of Jacobi-type quadrature rules on the same element sh toolchain = {'name': 'intel', 'version': '2014b'} -source_urls = ['https://launchpad.net/%(namelower)s/%(version_major_minor)s.x/release-%(version_major_minor)s/+download/'] +source_urls = [ + 'https://launchpad.net/%(namelower)s/%(version_major_minor)s.x/release-%(version_major_minor)s/+download/', +] sources = [SOURCELOWER_TAR_GZ] python = "Python" diff --git a/easybuild/easyconfigs/f/FLASH/FLASH-1.2.11-foss-2015b.eb b/easybuild/easyconfigs/f/FLASH/FLASH-1.2.11-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..8df3311e827b7d0e5e73971d0d5846a46275c15d --- /dev/null +++ b/easybuild/easyconfigs/f/FLASH/FLASH-1.2.11-foss-2015b.eb @@ -0,0 +1,25 @@ +easyblock = 'MakeCp' + +name = 'FLASH' +version = '1.2.11' + +homepage = 'https://ccb.jhu.edu/software/FLASH/' +description = """FLASH (Fast Length Adjustment of SHort reads) is a very fast and accurate software + tool to merge paired-end reads from next-generation sequencing experiments. FLASH is designed to + merge pairs of reads when the original DNA fragments are shorter than twice the length of reads. + The resulting longer reads can significantly improve genome assemblies. They can also improve + transcriptome assembly when FLASH is used to merge RNA-seq data.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = ['http://download.sourceforge.net/%(namelower)spage'] +sources = [SOURCE_TAR_GZ] + +files_to_copy = [(['flash'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/flash'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb index 0bc1badf5f7aa41a88cb5baa7d528f5f340e1bc2..5a7bfc53c3d04e7a13eb74b87b82931820a58c1e 100644 --- a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb +++ b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-foss-2014b.eb @@ -23,7 +23,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/fltk-config','bin/fluid'], + 'files': ['bin/fltk-config', 'bin/fluid'], 'dirs': ['lib'], } diff --git a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-goolf-1.4.10.eb index 9b7f1917c4afd27ba99d7f7b80169dd3ff53ceec..89182262213ea5ef414e2cc7e5bea16a55ea61f0 100644 --- a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-goolf-1.4.10.eb @@ -11,7 +11,7 @@ description = """FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.""" -toolchain = {'name': 'goolf' , 'version': '1.4.10'} +toolchain = {'name': 'goolf', 'version': '1.4.10'} sources = ['%(namelower)s-%(version)s-source.tar.gz'] source_urls = ['http://fltk.org/pub/%(namelower)s/%(version)s/'] @@ -22,7 +22,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/fltk-config','bin/fluid'], + 'files': ['bin/fltk-config', 'bin/fluid'], 'dirs': ['lib'], } diff --git a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-ictce-5.3.0.eb index 11bcbb2f83f28edd4fee5bd3b50522c48d4d14a6..cdb8c7911115b6da2488e08010c51ced11e62eb2 100644 --- a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-ictce-5.3.0.eb @@ -22,7 +22,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/fltk-config','bin/fluid'], + 'files': ['bin/fltk-config', 'bin/fluid'], 'dirs': ['lib'], } diff --git a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb index 5bc592de5f90db2a73682bc60e9cc7afbcb2da10..a70eaf387109e2394e29357f0096a753e7af6fc1 100644 --- a/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb +++ b/easybuild/easyconfigs/f/FLTK/FLTK-1.3.2-intel-2014b.eb @@ -23,7 +23,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/fltk-config','bin/fluid'], + 'files': ['bin/fltk-config', 'bin/fluid'], 'dirs': ['lib'], } diff --git a/easybuild/easyconfigs/f/FSL/FSL-4.1.9-ictce-4.0.6.eb b/easybuild/easyconfigs/f/FSL/FSL-4.1.9-ictce-4.0.6.eb index f58cfc0a32b4a148b5d0a1de30f661fb910fa42c..087f9525efab34bdd797786e96aff45c7c77adce 100644 --- a/easybuild/easyconfigs/f/FSL/FSL-4.1.9-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/f/FSL/FSL-4.1.9-ictce-4.0.6.eb @@ -10,9 +10,9 @@ source_urls = ["http://www.fmrib.ox.ac.uk/fsldownloads/"] sources = ['%s-%s-sources.tar.gz' % (name.lower(), version)] patches = [ - 'FSL_makefile_fixes.patch', - 'FSL_icc_nan-inf_fix.patch' - ] + 'FSL_makefile_fixes.patch', + 'FSL_icc_nan-inf_fix.patch' +] # libX11-devel is required for X11/Xlib.h, required by tk build osdependencies = ['libX11-devel'] diff --git a/easybuild/easyconfigs/f/FSL/FSL-4.1.9-ictce-5.3.0.eb b/easybuild/easyconfigs/f/FSL/FSL-4.1.9-ictce-5.3.0.eb index e20f5d2a083b5098fa089ad21b3f81ed0ef69744..af52a65745684f1a3ccf7df58122d9c4267d64bf 100644 --- a/easybuild/easyconfigs/f/FSL/FSL-4.1.9-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/FSL/FSL-4.1.9-ictce-5.3.0.eb @@ -10,9 +10,9 @@ source_urls = ["http://www.fmrib.ox.ac.uk/fsldownloads/"] sources = ['%s-%s-sources.tar.gz' % (name.lower(), version)] patches = [ - 'FSL_makefile_fixes.patch', - 'FSL_icc_nan-inf_fix.patch' - ] + 'FSL_makefile_fixes.patch', + 'FSL_icc_nan-inf_fix.patch' +] # libX11-devel is required for X11/Xlib.h, required by tk build osdependencies = ['libX11-devel'] diff --git a/easybuild/easyconfigs/f/FastQC/FastQC-0.10.1-Java-1.7.0_80.eb b/easybuild/easyconfigs/f/FastQC/FastQC-0.10.1-Java-1.7.0_80.eb index 02def8d26790c365a1fb5a7744b6ec18b3cfa292..d2d03ec9b4758291ed8d08cb01b1dcc635dedfd5 100644 --- a/easybuild/easyconfigs/f/FastQC/FastQC-0.10.1-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/f/FastQC/FastQC-0.10.1-Java-1.7.0_80.eb @@ -17,7 +17,7 @@ description = """FastQC is a quality control application for high throughput seq application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['%(namelower)s_v%(version)s.zip'] source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/%(namelower)s'] @@ -32,8 +32,14 @@ dependencies = [(java, javaver)] postinstallcmds = ['chmod +x %(installdir)s/fastqc'] sanity_check_paths = { +<<<<<<< HEAD:easybuild/easyconfigs/f/FastQC/FastQC-0.10.1-Java-1.7.0_80.eb 'files': ['fastqc'], 'dirs': [], +======= + 'files': ["fastqc", "fastqc_icon.ico", "INSTALL.txt", "jbzip2-0.9.jar", "LICENSE.txt", + "README.txt", "RELEASE_NOTES.txt", "run_fastqc.bat", "sam-1.32.jar"], + 'dirs': ["Contaminants", "Help", "Templates", "uk"], +>>>>>>> develop:easybuild/easyconfigs/f/FastQC/FastQC-0.10.1-goolf-1.4.10.eb } sanity_check_commands = [('fastqc', '-v')] diff --git a/easybuild/easyconfigs/f/FastQC/FastQC-0.11.2-Java-1.7.0_60.eb b/easybuild/easyconfigs/f/FastQC/FastQC-0.11.2-Java-1.7.0_60.eb index 77e77bc53cd8eeb30e52a751737296c2ad1d6826..045b3e4281bf2eb1c2d14320827b9128650cf8e6 100644 --- a/easybuild/easyconfigs/f/FastQC/FastQC-0.11.2-Java-1.7.0_60.eb +++ b/easybuild/easyconfigs/f/FastQC/FastQC-0.11.2-Java-1.7.0_60.eb @@ -9,7 +9,7 @@ description = """FastQC is a quality control application for high throughput seq application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/%(namelower)s'] sources = ['%(namelower)s_v%(version)s.zip'] diff --git a/easybuild/easyconfigs/f/FastQC/FastQC-0.11.3-Java-1.7.0_80.eb b/easybuild/easyconfigs/f/FastQC/FastQC-0.11.3-Java-1.7.0_80.eb index cda11898cd93b0e04a90855a92433eb7594a3d37..6b39ac84458f5e9003004efdfc12809fe240d728 100644 --- a/easybuild/easyconfigs/f/FastQC/FastQC-0.11.3-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/f/FastQC/FastQC-0.11.3-Java-1.7.0_80.eb @@ -9,7 +9,7 @@ description = """FastQC is a quality control application for high throughput seq application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/%(namelower)s'] sources = ['%(namelower)s_v%(version)s.zip'] diff --git a/easybuild/easyconfigs/f/FastQC/FastQC-0.11.4-Java-1.8.0_66.eb b/easybuild/easyconfigs/f/FastQC/FastQC-0.11.4-Java-1.8.0_66.eb index 811ae1b2f1656007f933a55db6a633230b2e63f4..4b0d9817eb47affa8952f76a421b8504565238a1 100644 --- a/easybuild/easyconfigs/f/FastQC/FastQC-0.11.4-Java-1.8.0_66.eb +++ b/easybuild/easyconfigs/f/FastQC/FastQC-0.11.4-Java-1.8.0_66.eb @@ -9,7 +9,7 @@ description = """FastQC is a quality control application for high throughput seq application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/%(namelower)s'] sources = ['%(namelower)s_v%(version)s.zip'] diff --git a/easybuild/easyconfigs/f/FastQC/FastQC-0.11.4-Java-1.8.0_74.eb b/easybuild/easyconfigs/f/FastQC/FastQC-0.11.4-Java-1.8.0_74.eb index 1ade195661a12c575a1a8e2f0f601b31e10b71ad..94117f70592cd50a9306cde0108e497370892d48 100644 --- a/easybuild/easyconfigs/f/FastQC/FastQC-0.11.4-Java-1.8.0_74.eb +++ b/easybuild/easyconfigs/f/FastQC/FastQC-0.11.4-Java-1.8.0_74.eb @@ -9,7 +9,7 @@ description = """FastQC is a quality control application for high throughput seq application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/%(namelower)s'] sources = ['%(namelower)s_v%(version)s.zip'] diff --git a/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.0g-goolf-1.5.14.eb b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.0g-goolf-1.5.14.eb new file mode 100644 index 0000000000000000000000000000000000000000..69c610cd3fa824ca2232f9fbe5e9c8de682c8bc3 --- /dev/null +++ b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.0g-goolf-1.5.14.eb @@ -0,0 +1,22 @@ +name = 'FreeXL' +version = '1.0.0g' + +easyblock = 'ConfigureMake' + +homepage = "https://www.gaia-gis.it/fossil/freexl/index" +description = "FreeXL is an open source library to extract valid data from within an Excel (.xls) spreadsheet." + +toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchainopts = {'usempi': False, 'pic': True} + +source_urls = ['http://www.gaia-gis.it/gaia-sins/freexl-sources/'] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [('CMake', '2.8.10.2')] + +sanity_check_paths = { + 'files': ["lib/libfreexl.la"], + 'dirs': ["lib"] + } + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.1-intel-2015a.eb b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.1-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..0401395acc9e127fe0a882ff939979886d06b220 --- /dev/null +++ b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.1-intel-2015a.eb @@ -0,0 +1,22 @@ +name = 'FreeXL' +version = '1.0.1' + +easyblock = 'ConfigureMake' + +homepage = "https://www.gaia-gis.it/fossil/freexl/index" +description = "FreeXL is an open source library to extract valid data from within an Excel (.xls) spreadsheet." + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'usempi': False, 'pic': True} + +source_urls = ['http://www.gaia-gis.it/gaia-sins/freexl-sources/'] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [('CMake', '3.2.2')] + +sanity_check_paths = { + 'files': ["lib/libfreexl.la"], + 'dirs': ["lib"] + } + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-foss-2015a.eb b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..c38933ad4fa03ec8069dfc616171467f17ec934f --- /dev/null +++ b/easybuild/easyconfigs/f/FreeXL/FreeXL-1.0.2-foss-2015a.eb @@ -0,0 +1,22 @@ +name = 'FreeXL' +version = '1.0.2' + +easyblock = 'ConfigureMake' + +homepage = "https://www.gaia-gis.it/fossil/freexl/index" +description = "FreeXL is an open source library to extract valid data from within an Excel (.xls) spreadsheet." + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'usempi': False, 'pic': True} + +source_urls = ['http://www.gaia-gis.it/gaia-sins/freexl-sources/'] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [('CMake', '3.4.1')] + +sanity_check_paths = { + 'files': ["lib/libfreexl.la"], + 'dirs': ["lib"] + } + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb index 902b240c0498d9a384a1f761f30e94e85f6be9c1..4af4d1b872d6b68da6b11da276477c68e551f254 100644 --- a/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/fastqz/fastqz-1.5-GCC-4.8.2.eb @@ -37,7 +37,7 @@ cmds_map = [ files_to_copy = [(['fastqz', 'fapack'], 'bin')] sanity_check_paths = { - 'files': ["bin/fastqz", "bin/fapack"], + 'files': ["bin/fastqz", "bin/fapack"], 'dirs': [] } diff --git a/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-intel-2016a.eb b/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..33951308af68a4f506e2ed0c727bc31482a23d58 --- /dev/null +++ b/easybuild/easyconfigs/f/fixesproto/fixesproto-5.0-intel-2016a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'fixesproto' +version = '5.0' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org FixesProto protocol headers.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/xfixesproto.h', 'include/X11/extensions/xfixeswire.h'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.35-ictce-5.4.0.eb b/easybuild/easyconfigs/f/flex/flex-2.5.35-ictce-5.4.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..653b53ec920c4e03619928a4db3ae72567fd30d6 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.35-ictce-5.4.0.eb @@ -0,0 +1,14 @@ +name = 'flex' +version = '2.5.35' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'ictce', 'version': '5.4.0'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.37-goolf-1.5.14.eb b/easybuild/easyconfigs/f/flex/flex-2.5.37-goolf-1.5.14.eb index 3f5206f66ceb7f98101f7829015b32fa3141a733..852837bf5be97bf2a9d8bf4bbd2721bf2f29cb27 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.5.37-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.5.37-goolf-1.5.14.eb @@ -5,7 +5,7 @@ homepage = 'http://flex.sourceforge.net/' description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" -toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchain = {'name': 'goolf', 'version': '1.5.14'} toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-2015.06-XC.eb similarity index 87% rename from easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.1.29.eb rename to easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-2015.06-XC.eb index a6d2ced89c431f1f7c6f6da2afcd8a5941a407a7..d9b2e6f439e250edaa5289424a7ce6e72e2e70c2 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-2015.06-XC.eb @@ -5,7 +5,7 @@ homepage = 'http://flex.sourceforge.net/' description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-2015.11-XC.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-2015.11-XC.eb new file mode 100644 index 0000000000000000000000000000000000000000..7fbee438c59e031b996a89299a9df25c06ad93e5 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-2015.11-XC.eb @@ -0,0 +1,14 @@ +name = 'flex' +version = '2.5.39' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2-binutils-2.25.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2-binutils-2.25.eb index 55d2930dcc34a5adb9aae19ef18f51b5eae20753..98e5ff55276e13009f98c7b0bc1de298dae26f1b 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2-binutils-2.25.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2-binutils-2.25.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'flex' version = '2.5.39' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2.eb index 9b7e0571f2da77cea633a99219f9e72c49153bfa..1c15e90f19802698bd652fedb19559f92f98f91a 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.2.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'flex' version = '2.5.39' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.3-binutils-2.25.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.3-binutils-2.25.eb index 1d773d362f673d72cd7dc3bf21fd5bb0fc09b54b..667f205b6954315caf061213eac9a4b997c25c0b 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.3-binutils-2.25.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.3-binutils-2.25.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'flex' version = '2.5.39' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.3.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.3.eb index 4b714067507554e5d69499ae45e2320dd752ebf1..034599b7bc3de6886532e66e3a52affef9b6bfe7 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.3.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-4.9.3.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'flex' version = '2.5.39' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-5.1.0-binutils-2.25.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-5.1.0-binutils-2.25.eb index b6406b3fee3e4248c7dc45bd1ed5628d8a758725..75d18ede78430340ae8f7496931339f6e688b5f6 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-5.1.0-binutils-2.25.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCC-5.1.0-binutils-2.25.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'flex' version = '2.5.39' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-GCCcore-4.9.3.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCCcore-4.9.3.eb index ecfc6d2f7e68e915391183241f9b9047b694ba33..bd9f2b71e7df2fca1cb02cd29fae60e4fc95f066 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.5.39-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-GCCcore-4.9.3.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'flex' version = '2.5.39' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-GNU-4.9.3-2.25.eb index 7c5e4528e08f09aacf2307715227d82f66ec7da5..3b653b0adc02af1583620de8c7e2890692646f32 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.5.39-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-GNU-4.9.3-2.25.eb @@ -1,5 +1,3 @@ -easyblock = 'ConfigureMake' - name = 'flex' version = '2.5.39' diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-foss-2016a.eb similarity index 88% rename from easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.25.eb rename to easybuild/easyconfigs/f/flex/flex-2.5.39-foss-2016a.eb index e9455b96ac13377f52d6e2c087092067459a0ed9..352bff833483b41833a9c2adf3263328bfcc34d2 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-foss-2016a.eb @@ -5,7 +5,7 @@ homepage = 'http://flex.sourceforge.net/' description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchain = {'name': 'foss', 'version': '2016a'} toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-2016a.eb similarity index 88% rename from easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.40.eb rename to easybuild/easyconfigs/f/flex/flex-2.5.39-intel-2016a.eb index 470ec059e0012130b28cf6d879d2ef0d0e47f370..419266740d48f770220ab36af19b4eea900c0fea 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.5.39-CrayGNU-5.2.40.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-2016a.eb @@ -5,7 +5,7 @@ homepage = 'http://flex.sourceforge.net/' description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchain = {'name': 'intel', 'version': '2016a'} toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-para-2014.12.eb b/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-para-2014.12.eb index 469e32f3d7341e7622a534695852f35e40cbca63..7cd93ab5fc2de6cab6ecf702a34f32caa7962840 100644 --- a/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-para-2014.12.eb +++ b/easybuild/easyconfigs/f/flex/flex-2.5.39-intel-para-2014.12.eb @@ -5,7 +5,7 @@ homepage = 'http://flex.sourceforge.net/' description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" -toolchain = {'name': 'intel-para', 'version': '2014.12'} +toolchain = {'name': 'intel-para', 'version': '2014.12'} toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.0-GCC-4.9.2.eb b/easybuild/easyconfigs/f/flex/flex-2.6.0-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..3626cfd2399a402a902c8c3729d6b01632c4b2e8 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.6.0-GCC-4.9.2.eb @@ -0,0 +1,16 @@ +name = 'flex' +version = '2.6.0' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +dependencies = [('Bison', '3.0.4')] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.0-foss-2015a.eb b/easybuild/easyconfigs/f/flex/flex-2.6.0-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..bd783441d3334e3add6192d730197dc1c0c64441 --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.6.0-foss-2015a.eb @@ -0,0 +1,16 @@ +name = 'flex' +version = '2.6.0' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +dependencies = [('Bison', '3.0.4')] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.0-foss-2016a.eb b/easybuild/easyconfigs/f/flex/flex-2.6.0-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..13ec4d5ea65f82f531926b869fa1ff7f4c8037ef --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.6.0-foss-2016a.eb @@ -0,0 +1,16 @@ +name = 'flex' +version = '2.6.0' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'foss', 'version': '2016a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +dependencies = [('Bison', '3.0.4')] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/flex/flex-2.6.0-intel-2016a.eb b/easybuild/easyconfigs/f/flex/flex-2.6.0-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..f451c3ed904166bda6cbe3f0133aa5173eae284c --- /dev/null +++ b/easybuild/easyconfigs/f/flex/flex-2.6.0-intel-2016a.eb @@ -0,0 +1,16 @@ +name = 'flex' +version = '2.6.0' + +homepage = 'http://flex.sourceforge.net/' +description = """Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, + sometimes called a tokenizer, is a program which recognizes lexical patterns in text.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] + +dependencies = [('Bison', '3.0.4')] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-foss-2014b.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-foss-2014b.eb index 4cd5e51c8c12c38e5035df12bc9aae0af6388597..c1ab6dd32ff0e8f8ce30d6f0535f26f5223d22b0 100644 --- a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-foss-2014b.eb +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-foss-2014b.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [ ('expat', '2.1.0'), - ('freetype','2.5.3'), + ('freetype', '2.5.3'), ] moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-goolf-1.7.20.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-goolf-1.7.20.eb index e77da2e1fe8e9bdc91c4533bcc71cddafbadac5e..51c9c97afb67d3aefc327c47198bfb5399e4f15b 100644 --- a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-goolf-1.7.20.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [ ('expat', '2.1.0'), - ('freetype','2.5.3'), + ('freetype', '2.5.3'), ] configopts = '--disable-docs ' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb index 1d43a6c1f3b98621ae23421aa0a56486966b0f7f..0cbc9d12008d02c1ce12f8023330489194fbf3b6 100644 --- a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.1-intel-2014b.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [ ('expat', '2.1.0'), - ('freetype','2.5.3'), + ('freetype', '2.5.3'), ] configopts = '--disable-docs ' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.94-goolf-1.7.20.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.94-goolf-1.7.20.eb index 8fdfa9a81b7a10270fc68987042f97919f5b5cbb..6e68a31103a99bb6470619a6b35ca64e271aa9ce 100644 --- a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.94-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.94-goolf-1.7.20.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [ ('expat', '2.1.0'), - ('freetype','2.6'), + ('freetype', '2.6'), ] configopts = '--disable-docs ' diff --git a/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.94-intel-2016a.eb b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.94-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..f008f4125b60fbaaae2b7aa97e274125c11f6778 --- /dev/null +++ b/easybuild/easyconfigs/f/fontconfig/fontconfig-2.11.94-intel-2016a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'fontconfig' +version = '2.11.94' + +homepage = 'http://www.freedesktop.org/software/fontconfig' +description = """Fontconfig is a library designed to provide system-wide font configuration, customization and +application access.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['http://www.freedesktop.org/software/fontconfig/release/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('expat', '2.1.0'), + ('freetype', '2.6.2'), +] + +configopts = '--disable-docs ' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/fontsproto/fontsproto-2.1.3-intel-2015a.eb b/easybuild/easyconfigs/f/fontsproto/fontsproto-2.1.3-intel-2015a.eb index 7e4853de2ffee65d77d188c357e45632056be381..6c5ce993873e7f5c7bc3475680d36e78c998aae5 100644 --- a/easybuild/easyconfigs/f/fontsproto/fontsproto-2.1.3-intel-2015a.eb +++ b/easybuild/easyconfigs/f/fontsproto/fontsproto-2.1.3-intel-2015a.eb @@ -13,8 +13,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : [], - 'dirs' : ['include/X11/fonts'], + 'files': [], + 'dirs': ['include/X11/fonts'], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/f/fontsproto/fontsproto-2.1.3-intel-2015b.eb b/easybuild/easyconfigs/f/fontsproto/fontsproto-2.1.3-intel-2015b.eb index 5c120f5dd2170d55a31b9bde7821e4b0df8523d4..5c83a62b97f110f575b7046df964205e3d44cd96 100644 --- a/easybuild/easyconfigs/f/fontsproto/fontsproto-2.1.3-intel-2015b.eb +++ b/easybuild/easyconfigs/f/fontsproto/fontsproto-2.1.3-intel-2015b.eb @@ -13,8 +13,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : [], - 'dirs' : ['include/X11/fonts'], + 'files': [], + 'dirs': ['include/X11/fonts'], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/f/fontsproto/fontsproto-2.1.3-intel-2016a.eb b/easybuild/easyconfigs/f/fontsproto/fontsproto-2.1.3-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..5b1c1517ba9fd32526c995e76cc4e99ef739d60c --- /dev/null +++ b/easybuild/easyconfigs/f/fontsproto/fontsproto-2.1.3-intel-2016a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'fontsproto' +version = '2.1.3' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "X11 font extension wire protocol" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': [], + 'dirs': ['include/X11/fonts'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/f/foss/foss-2014b.eb b/easybuild/easyconfigs/f/foss/foss-2014b.eb index 5ff6c5693e15c34ab4df7050215d1736a2c4b025..538536a6960c08a58f756b214563ba6c20156db0 100644 --- a/easybuild/easyconfigs/f/foss/foss-2014b.eb +++ b/easybuild/easyconfigs/f/foss/foss-2014b.eb @@ -28,7 +28,7 @@ comp_mpi_tc = (comp_mpi_tc_name, comp_mpi_tc_ver) # because of toolchain preperation functions dependencies = [ ('GCC', '4.8.3'), - ('OpenMPI', '1.8.1', '', comp), + ('OpenMPI', '1.8.1', '', comp), (blaslib, blasver, blassuff, comp), ('FFTW', '3.3.4', '', comp_mpi_tc), ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), diff --git a/easybuild/easyconfigs/f/foss/foss-2016a.eb b/easybuild/easyconfigs/f/foss/foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..d0ff96c9d1bc4e2faac638d4ffe341b4cb771b87 --- /dev/null +++ b/easybuild/easyconfigs/f/foss/foss-2016a.eb @@ -0,0 +1,35 @@ +easyblock = 'Toolchain' + +name = 'foss' +version = '2016a' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, including + OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +gccver = '4.9.3-2.25' + +blaslib = 'OpenBLAS' +blasver = '0.2.15' +blas = '%s-%s' % (blaslib, blasver) +blassuff = '-LAPACK-3.6.0' + +# toolchain used to build foss dependencies +comp_mpi_tc_name = 'gompi' +comp_mpi_tc = (comp_mpi_tc_name, version) + +# compiler toolchain depencies +# we need GCC and OpenMPI as explicit dependencies instead of gompi toolchain +# because of toolchain preperation functions +# For binutils, stick to http://wiki.osdev.org/Cross-Compiler_Successful_Builds +dependencies = [ + ('GCC', gccver), + ('OpenMPI', '1.10.2', '', ('GCC', gccver)), + (blaslib, blasver, blassuff, ('GCC', gccver)), + ('FFTW', '3.3.4', '', comp_mpi_tc), + ('ScaLAPACK', '2.0.2', '-%s%s' % (blas, blassuff), comp_mpi_tc), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb b/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb index 0f7a6c3ea5b97878bd3cf555af52f525fabd32d5..c4cf3f3ff7cfe9313c30f3c3289cf7c42473d926 100644 --- a/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/f/fqzcomp/fqzcomp-4.6-GCC-4.8.2.eb @@ -24,7 +24,7 @@ source_urls = [SOURCEFORGE_SOURCE] files_to_copy = [(['fqz_comp'], 'bin')] sanity_check_paths = { - 'files': ["bin/fqz_comp"], + 'files': ["bin/fqz_comp"], 'dirs': [] } diff --git a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-goolf-1.4.10.eb b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-goolf-1.4.10.eb index d7a5bba2c4e0eca57695a978cd0415ab5f8c600d..c1785a1f92eece51dd7f0405d7950f0510bc401b 100644 --- a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-goolf-1.4.10.eb @@ -14,7 +14,7 @@ source_urls = ['http://prdownloads.sourceforge.net/%(name)s'] dependencies = [('libXi', '1.7.2')] sanity_check_paths = { - 'files': ['lib/libglut.a', 'lib/libglut.so'], + 'files': ['lib/libglut.a', 'lib/libglut.%s' % SHLIB_EXT], 'dirs': ['include/GL'], } diff --git a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-4.1.13.eb b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-4.1.13.eb index 7f4b598d23f85ba56d91f92d896ee629f825c0e3..56db81441a0773cd5a7c71032dc6203f103fa3af 100644 --- a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-4.1.13.eb @@ -14,7 +14,7 @@ source_urls = ['http://prdownloads.sourceforge.net/%(name)s'] dependencies = [('libXi', '1.7.2')] sanity_check_paths = { - 'files': ['lib/libglut.a', 'lib/libglut.so'], + 'files': ['lib/libglut.a', 'lib/libglut.%s' % SHLIB_EXT], 'dirs': ['include/GL'], } diff --git a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-5.3.0.eb b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-5.3.0.eb index 0519e56f117879db92d4ee8cb1f95db65941249f..bed452773a5a7aad17f5bed7a4b3e395e5ba0025 100644 --- a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-ictce-5.3.0.eb @@ -14,7 +14,7 @@ source_urls = ['http://prdownloads.sourceforge.net/%(name)s'] dependencies = [('libXi', '1.7.2')] sanity_check_paths = { - 'files': ['lib/libglut.a', 'lib/libglut.so'], + 'files': ['lib/libglut.a', 'lib/libglut.%s' % SHLIB_EXT], 'dirs': ['include/GL'], } diff --git a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-intel-2015a.eb b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-intel-2015a.eb index f501cd2fef4b62782e6d82fa759b0d94b58a8a34..6625f21f90e92f4465e29fc9ac76de195d695119 100644 --- a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-intel-2015a.eb +++ b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-intel-2015a.eb @@ -14,7 +14,7 @@ source_urls = ['http://prdownloads.sourceforge.net/%(name)s'] dependencies = [('libXi', '1.7.4')] sanity_check_paths = { - 'files': ['lib/libglut.a', 'lib/libglut.so'], + 'files': ['lib/libglut.a', 'lib/libglut.%s' % SHLIB_EXT], 'dirs': ['include/GL'], } diff --git a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-intel-2015b.eb b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-intel-2015b.eb index c494fa68a7a6bf1365e7dc1c950fc6e00456a784..1b9b08eda7618dc436970f5dcc8250a31fa3fd29 100644 --- a/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-intel-2015b.eb +++ b/easybuild/easyconfigs/f/freeglut/freeglut-2.8.1-intel-2015b.eb @@ -14,7 +14,7 @@ source_urls = ['http://prdownloads.sourceforge.net/%(name)s'] dependencies = [('libXi', '1.7.4')] sanity_check_paths = { - 'files': ['lib/libglut.a', 'lib/libglut.so'], + 'files': ['lib/libglut.a', 'lib/libglut.%s' % SHLIB_EXT], 'dirs': ['include/GL'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.4.10-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/freetype/freetype-2.4.10-goalf-1.1.0-no-OFED.eb index 0933ebbe50bd2a910f29e1c8e8198face5ee00bd..cfe2971df55d1a69d4a018b392f96444b4471e70 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.4.10-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.4.10-goalf-1.1.0-no-OFED.eb @@ -12,7 +12,7 @@ source_urls = [GNU_SAVANNAH_SOURCE] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.4.10-goolf-1.4.10.eb b/easybuild/easyconfigs/f/freetype/freetype-2.4.10-goolf-1.4.10.eb index 13f7275f3ee6b2f0245e79fdecc8cfa4a30bc5a0..09e345ac68770efaa66f893035e10a05e4e56aa3 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.4.10-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.4.10-goolf-1.4.10.eb @@ -13,7 +13,7 @@ source_urls = [GNU_SAVANNAH_SOURCE] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.4.10-ictce-4.0.6.eb b/easybuild/easyconfigs/f/freetype/freetype-2.4.10-ictce-4.0.6.eb index d8180f31a0372b76beb84bfb8ae66352b4529c4b..14dc056b132226056ed023b4ef91668af6868885 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.4.10-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.4.10-ictce-4.0.6.eb @@ -12,7 +12,7 @@ source_urls = [GNU_SAVANNAH_SOURCE] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.4.10-ictce-4.1.13.eb b/easybuild/easyconfigs/f/freetype/freetype-2.4.10-ictce-4.1.13.eb index 6cd7f858d2a1f8208595575f1fd493ea888e79cc..5a77c82a2712c90985f4cd2216c1cc68df8bfed7 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.4.10-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.4.10-ictce-4.1.13.eb @@ -12,7 +12,7 @@ source_urls = [GNU_SAVANNAH_SOURCE] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.4.10-ictce-5.3.0.eb b/easybuild/easyconfigs/f/freetype/freetype-2.4.10-ictce-5.3.0.eb index 115ca243f34aba97e7e2496a9aa35c1191a81536..f0c8e977f83efa56602b057a2636335648a5e0be 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.4.10-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.4.10-ictce-5.3.0.eb @@ -12,7 +12,7 @@ source_urls = [GNU_SAVANNAH_SOURCE] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.4.11-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/f/freetype/freetype-2.4.11-goalf-1.1.0-no-OFED.eb index 00039d8f1d4a323fa7a6cb57043936a1d9191e2a..bb44b1c6a9185f3b781002a0df612e002c8cd5c6 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.4.11-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.4.11-goalf-1.1.0-no-OFED.eb @@ -13,7 +13,7 @@ source_urls = [GNU_SAVANNAH_SOURCE] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.4.11-goolf-1.4.10.eb b/easybuild/easyconfigs/f/freetype/freetype-2.4.11-goolf-1.4.10.eb index 1df33cbab7fbd1fb3af133ff16333353deda150d..dafae024b098291bd3af68c3471f0d086f6209d5 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.4.11-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.4.11-goolf-1.4.10.eb @@ -13,7 +13,7 @@ source_urls = [GNU_SAVANNAH_SOURCE] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.4.11-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/f/freetype/freetype-2.4.11-ictce-3.2.2.u3.eb index b99078235aeacaaec15b9bf64427d8298dfe2ff5..ba8671fabfda616c2aa239e6a0a0f053494d72e4 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.4.11-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.4.11-ictce-3.2.2.u3.eb @@ -12,7 +12,7 @@ source_urls = [GNU_SAVANNAH_SOURCE] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.4.11-ictce-4.1.13.eb b/easybuild/easyconfigs/f/freetype/freetype-2.4.11-ictce-4.1.13.eb index 6187e6b9ba6cee1cf82bb23d2df5f578045d6277..dfc1ea425fa8712eeb6a174cebaeaf8547711edb 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.4.11-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.4.11-ictce-4.1.13.eb @@ -12,7 +12,7 @@ source_urls = [GNU_SAVANNAH_SOURCE] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.4.11-ictce-5.3.0.eb b/easybuild/easyconfigs/f/freetype/freetype-2.4.11-ictce-5.3.0.eb index 6c789c8bd3ac1111ce999148265cfe0f8b531f5b..93ed64ef3127e33bdd4d9c1e12ac9317bad17687 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.4.11-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.4.11-ictce-5.3.0.eb @@ -12,7 +12,7 @@ source_urls = ['http://download.savannah.gnu.org/releases/freetype/'] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.4.11-iqacml-3.7.3.eb b/easybuild/easyconfigs/f/freetype/freetype-2.4.11-iqacml-3.7.3.eb index b585104cabec1c559e800f0bf96d9edc6162cf17..36f7fddf9858b81c29e342ae1d3b0c772232a4fb 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.4.11-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.4.11-iqacml-3.7.3.eb @@ -12,7 +12,7 @@ source_urls = [GNU_SAVANNAH_SOURCE] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-goolf-1.4.10.eb index c8025842ef6b8a988c8e9185ee236e83503c86e9..c7a87aa9acca1a738f4e83cdee765f918cd54da6 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-goolf-1.4.10.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.6')] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-4.1.13.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-4.1.13.eb index de48d98038e81c797a4682b781b1b8650390ed3b..47b3494ce434bfc781b5f6d560f62ad2030a069f 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-4.1.13.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.6')] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-5.3.0.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-5.3.0.eb index d509fdfff7e14e12f310288ca786fa3fcdb0c3bd..5fa7fbc89e960634020edf4e5379515f36058943 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-5.3.0.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.6')] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-5.5.0.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-5.5.0.eb index e9d9036e940a074ddc9e4cf38d4e6716c74bcc27..6af71f85bae7577ee876385d1bd82622007fb16e 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.0.1-ictce-5.5.0.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.6')] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.2-ictce-5.5.0.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.2-ictce-5.5.0.eb index 578bf6e2b3a52273b060f4821f6edf2e67c53ccc..7424371c2999170871b01eaf1de2db21b2df6ff3 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.2-ictce-5.5.0.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.9')] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-foss-2014b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-foss-2014b.eb index c6397df9cf9e60b9dda5f9524da1f08be7b00a0e..1840f18b99cfba51be6ffc57b88d16b47def8fe6 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-foss-2014b.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-foss-2014b.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.12')] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-goolf-1.7.20.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-goolf-1.7.20.eb index c5fb92d43c4f151bdbf760adc52541f881e8a87a..cf4ca6186c312c0147657da9b3685f817da2ba08 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-goolf-1.7.20.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.12')] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb index c0d1a23ea9cf481b6bda79480d1b8a55439e90f9..68312d108df26ef060a24d28e4ff22e4e4cbbf1a 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.3-intel-2014b.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.12')] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.5-foss-2015a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-foss-2015a.eb index a62c8bab170d8f94db13161c7738b7794358d8f3..e9f0fd7c959882fdd0ff168845aece4264346cfc 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.5-foss-2015a.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-foss-2015a.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.16')] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015a.eb index 3f93bd607044f78ff89698115b0df86effe25b6f..5eb7f91b58423594ee233daee2957a7a58c53b88 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015a.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015a.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.16')] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015b.eb index baf0037fb6bd05c168d9b9fd174eda5df34882e4..ca24a618dc1be131169a1fcb474295c67fab6894 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015b.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.5.5-intel-2015b.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.16')] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6-foss-2015a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6-foss-2015a.eb index 3678616622f855c37aeabec97a8ae35f4c8ce5fe..89788124588b4233d1d2bcd61db8bf26eee5d509 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6-foss-2015a.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6-foss-2015a.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.17')] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6-goolf-1.7.20.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6-goolf-1.7.20.eb index 484ef7705acac9012be473c86b0798b3c5a9105d..af7228f4f5421469eadbf09220ad01825005b70b 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6-goolf-1.7.20.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.17')] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6-intel-2015a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6-intel-2015a.eb index 6a1b7e739c956a04be39b4b3c1439138e742eece..316e040e0881748cf5afce930605f538c23bbc08 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6-intel-2015a.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6-intel-2015a.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.17')] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.1-intel-2015b-libpng-1.6.19.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.1-intel-2015b-libpng-1.6.19.eb index ae1e8f4cb7bbfd7fea3db99c7113ac1dc7b6f55a..32b12425a852e0283b685a27c6cd1ca39a7d1771 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6.1-intel-2015b-libpng-1.6.19.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.1-intel-2015b-libpng-1.6.19.eb @@ -16,7 +16,7 @@ versionsuffix = '-libpng-%s' % libpngver dependencies = [('libpng', libpngver)] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.1-intel-2015b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.1-intel-2015b.eb index 0138ab3d151339bc622387832802feae8a8812ca..0913227caf19a6b5c571a4e5710312d98f6299af 100644 --- a/easybuild/easyconfigs/f/freetype/freetype-2.6.1-intel-2015b.eb +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.1-intel-2015b.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] dependencies = [('libpng', '1.6.18')] sanity_check_paths = { - 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.so', 'lib/pkgconfig/freetype2.pc'], + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], 'dirs': ['include/freetype2'], } diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2015a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..32c4b9ab5ccd913fba135742d42e37c7e813dd7f --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2015a.eb @@ -0,0 +1,21 @@ +name = 'freetype' +version = '2.6.2' + +homepage = 'http://freetype.org' +description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and + portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display + servers, font conversion tools, text image generation tools, and many other products as well.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('libpng', '1.6.20')] + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2015b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..54449d24056244860310baefc79710fc24314d32 --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-foss-2015b.eb @@ -0,0 +1,21 @@ +name = 'freetype' +version = '2.6.2' + +homepage = 'http://freetype.org' +description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and + portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display + servers, font conversion tools, text image generation tools, and many other products as well.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('libpng', '1.6.21')] + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-intel-2015b.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..0811253154166a1820d050035053515e24178a71 --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-intel-2015b.eb @@ -0,0 +1,22 @@ +name = 'freetype' +version = '2.6.2' + +homepage = 'http://freetype.org' +description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and + portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display + servers, font conversion tools, text image generation tools, and many other products as well.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('libpng', '1.6.21')] + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, + 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/f/freetype/freetype-2.6.2-intel-2016a.eb b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..ce2c31a36a9264bd5baca5decec58f728241497a --- /dev/null +++ b/easybuild/easyconfigs/f/freetype/freetype-2.6.2-intel-2016a.eb @@ -0,0 +1,22 @@ +name = 'freetype' +version = '2.6.2' + +homepage = 'http://freetype.org' +description = """FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and + portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display + servers, font conversion tools, text image generation tools, and many other products as well.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [GNU_SAVANNAH_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [('libpng', '1.6.21')] + +sanity_check_paths = { + 'files': ['bin/freetype-config', 'lib/libfreetype.a', 'lib/libfreetype.%s' % SHLIB_EXT, + 'lib/pkgconfig/freetype2.pc'], + 'dirs': ['include/freetype2'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20141205-R1-intel-2016a.eb b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20141205-R1-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..b9f96d96e3dbc37b9643f022aff8d5f5e671a57a --- /dev/null +++ b/easybuild/easyconfigs/g/GAMESS-US/GAMESS-US-20141205-R1-intel-2016a.eb @@ -0,0 +1,23 @@ +name = 'GAMESS-US' +version = '20141205-R1' + +homepage = 'http://www.msg.chem.iastate.edu/gamess/index.html' +description = """ The General Atomic and Molecular Electronic Structure System (GAMESS) + is a general ab initio quantum chemistry package. """ + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'usempi': True} + +# manually download via http://www.msg.chem.iastate.edu/gamess/download.html (requires registration) +# rename gamess-current.tar.gz by changing 'current' to the proper version +sources = ['gamess-%(version)s.tar.gz'] +checksums = ['6403592eaa885cb3691505964d684516'] + +patches = ['GAMESS-US_rungms-slurm.patch'] + +# increase these numbers if your system is bigger in terms of cores-per-node or number of nodes +# it's OK if these values are larger than what your system provides +maxcpus = '1000' +maxnodes = '100000' + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/g/GATE/GATE-7.0-intel-2015a.eb b/easybuild/easyconfigs/g/GATE/GATE-7.0-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..e93ce7917511e1e253587bed2307978509a36f74 --- /dev/null +++ b/easybuild/easyconfigs/g/GATE/GATE-7.0-intel-2015a.eb @@ -0,0 +1,29 @@ +name = 'GATE' +version = '7.0' + +homepage = 'http://www.opengatecollaboration.org/' +description = """GATE is an advanced opensource software developed by the international OpenGATE collaboration and + dedicated to the numerical simulations in medical imaging. It currently supports simulations of Emission Tomography + (Positron Emission Tomography - PET and Single Photon Emission Computed Tomography - SPECT), and Computed Tomography""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [('%(namelower)s_v%(version)s.tar_.gz', "tar xfvz %s")] +source_urls = ['http://www.opengatecollaboration.org/sites/opengatecollaboration.org/files/'] + +patches = [ + 'GATE-%(version)s_Makefile-prefix.patch', + 'GATE-%(version)s_unistdh.patch', +] + +builddependencies = [ + ('CMake', '3.1.3'), +] + +dependencies = [ + ('Geant4', '9.6.p04'), + ('CLHEP', '2.1.3.1'), + ('ROOT', 'v5.34.26'), +] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/g/GATE/GATE-7.0_Makefile-prefix.patch b/easybuild/easyconfigs/g/GATE/GATE-7.0_Makefile-prefix.patch new file mode 100644 index 0000000000000000000000000000000000000000..eb39ff836c7044cbb8790a714fa6fe5466805802 --- /dev/null +++ b/easybuild/easyconfigs/g/GATE/GATE-7.0_Makefile-prefix.patch @@ -0,0 +1,46 @@ +--- gate_v7.0/cluster_tools/filemerger/Makefile.orig 2014-05-12 11:18:16.000000000 +0200 ++++ gate_v7.0/cluster_tools/filemerger/Makefile 2015-03-04 10:54:55.461301152 +0100 +@@ -16,6 +16,8 @@ + INCLUDE := -I./include `geant4-config --cflags` `root-config --cflags` + LDFLAGS := `geant4-config --libs` `root-config --glibs` + ++PREFIX := /usr/local ++ + TARGET := gjm + + .PHONY: all clean directories cleanall install uninstall +@@ -49,8 +51,9 @@ + + install: + @echo Installing ... +- @$(CP) $(TARGET) /usr/local/bin ++ mkdir -p $(PREFIX)/bin ++ @$(CP) $(TARGET) $(PREFIX)/bin + + uninstall: + @echo Uninstalling... +- @$(RM) /usr/local/bin/$(TARGET) ++ @$(RM) $(PREFIX)/bin/$(TARGET) +--- gate_v7.0/cluster_tools/jobsplitter/Makefile.orig 2014-05-12 11:18:16.000000000 +0200 ++++ gate_v7.0/cluster_tools/jobsplitter/Makefile 2015-03-04 10:54:55.461301152 +0100 +@@ -16,6 +16,8 @@ + INCLUDE := -I./include `geant4-config --cflags` + LDFLAGS := `geant4-config --libs` + ++PREFIX := /usr/local ++ + TARGET := gjs + + .PHONY: all clean directories cleanall install uninstall +@@ -57,8 +59,9 @@ + + install: + @echo Installing ... +- @$(CP) $(TARGET) /usr/local/bin ++ mkdir -p $(PREFIX)/bin ++ @$(CP) $(TARGET) $(PREFIX)/bin + + uninstall: + @echo Uninstalling... +- @$(RM) /usr/local/bin/$(TARGET) ++ @$(RM) $(PREFIX)/bin/$(TARGET) diff --git a/easybuild/easyconfigs/g/GATE/GATE-7.0_unistdh.patch b/easybuild/easyconfigs/g/GATE/GATE-7.0_unistdh.patch new file mode 100644 index 0000000000000000000000000000000000000000..13ce5cc6e63d4645254e04f8ddfd9b89950817c2 --- /dev/null +++ b/easybuild/easyconfigs/g/GATE/GATE-7.0_unistdh.patch @@ -0,0 +1,10 @@ +--- gate_v7.0/cluster_tools/jobsplitter/include/GateMacfileParser.hh.org 2014-05-12 11:18:16.000000000 +0200 ++++ gate_v7.0/cluster_tools/jobsplitter/include/GateMacfileParser.hh 2015-03-04 10:32:24.416298472 +0100 +@@ -19,6 +19,7 @@ + #include + #include + #include ++#include + + using namespace std; + diff --git a/easybuild/easyconfigs/g/GATK/GATK-1.0.5083.eb b/easybuild/easyconfigs/g/GATK/GATK-1.0.5083.eb index ddd5712d6f0345760c31665553c81f5bae9d76c9..dd2c25a6273d5f3bf74e63a40a1908768e78421c 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-1.0.5083.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-1.0.5083.eb @@ -9,7 +9,7 @@ description = """The GATK is a structured software library that makes writing ef medical resequencing projects such as 1000 Genomes and The Cancer Genome Atlas. These tools include things like a depth of coverage analyzers, a quality score recalibrator, a SNP/indel caller and a local realigner.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} # download manually from http://www.broadinstitute.org/gatk/download sources = ['GenomeAnalysisTK-%(version)s.tar.bz2'] diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb index daf52209028c60e3c5b5a07678f041e95b6f8ec8..ee70681358adac604a926d72c27e42aef1f0a9b0 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.5-2-Java-1.7.0_10.eb @@ -22,7 +22,7 @@ description = """The Genome Analysis Toolkit or GATK is a software package devel data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} # download manually from http://www.broadinstitute.org/gatk/download sources = ['GenomeAnalysisTK-%(version)s.tar.bz2'] diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb index 0c9ece0c956dd82d1040226b8a0b33c9133f979d..dde93eb10a0faf69de36703c1517e0c0fa89eb00 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.6-5-Java-1.7.0_10.eb @@ -22,7 +22,7 @@ description = """The Genome Analysis Toolkit or GATK is a software package devel data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} # download manually from http://www.broadinstitute.org/gatk/download sources = ['GenomeAnalysisTK-%(version)s.tar.bz2'] diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb index 12fe8dadb4ffcaa0a9dd9e48e8a65179b462994f..a45cb4ec3bdc1a0bfe22c1c04b29950175d0c060 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.7-4-Java-1.7.0_10.eb @@ -22,7 +22,7 @@ description = """The Genome Analysis Toolkit or GATK is a software package devel data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} # download manually from http://www.broadinstitute.org/gatk/download sources = ['GenomeAnalysisTK-%(version)s.tar.bz2'] diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb b/easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb index 98e7df7db87bfa06850ed5deadbe7047feb43e12..1bdef83c68fbaec7972033a6924a21a41e7a3269 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.7-4.eb @@ -9,7 +9,7 @@ description = """The GATK is a structured software library that makes writing ef medical resequencing projects such as 1000 Genomes and The Cancer Genome Atlas. These tools include things like a depth of coverage analyzers, a quality score recalibrator, a SNP/indel caller and a local realigner.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} # download manually from http://www.broadinstitute.org/gatk/download sources = ['GenomeAnalysisTK-%(version)s.tar.bz2'] diff --git a/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb index aa6e7fe2329812a0b0fe2e81e6f94d6609924724..21448792b2586cf3b6533b9d18d1ded0ecf8e58a 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-2.8-1-Java-1.7.0_10.eb @@ -22,7 +22,7 @@ description = """The Genome Analysis Toolkit or GATK is a software package devel data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} # download manually from http://www.broadinstitute.org/gatk/download sources = ['GenomeAnalysisTK-%(version)s.tar.bz2'] diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.0-0-Java-1.7.0_10.eb b/easybuild/easyconfigs/g/GATK/GATK-3.0-0-Java-1.7.0_10.eb index 13de380c1b550861e16910f07b1fcfe65ac645ae..a6fc22eedf1e257ac4834471f582160989a3dda7 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.0-0-Java-1.7.0_10.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.0-0-Java-1.7.0_10.eb @@ -22,7 +22,7 @@ description = """The Genome Analysis Toolkit or GATK is a software package devel data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} # download manually from http://www.broadinstitute.org/gatk/download sources = ['%s-%s.tar.bz2' % ("GenomeAnalysisTK", version)] diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_21.eb b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_21.eb index 065919e6f31fd1d5f743a679aec1296f3d5e4ecd..38e7ae6db1890778b73f7ac995af9aea865a3ed4 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_21.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_21.eb @@ -22,7 +22,7 @@ description = """The Genome Analysis Toolkit or GATK is a software package devel data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} # download manually from http://www.broadinstitute.org/gatk/download sources = ['GenomeAnalysisTK-%(version)s.tar.bz2'] diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_80.eb b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_80.eb index f53b54862bc930abd62012dac47fed1012790893..689accfbd9d1a55c8e429cb48c8d8cd60ea29a6b 100644 --- a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.7.0_80.eb @@ -22,7 +22,7 @@ description = """The Genome Analysis Toolkit or GATK is a software package devel data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} # download manually from http://www.broadinstitute.org/gatk/download sources = ['GenomeAnalysisTK-%(version)s.tar.bz2'] diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.8.0_66.eb b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.8.0_66.eb new file mode 100644 index 0000000000000000000000000000000000000000..520cb6b37a67786ee3d4a0181fc388fb8b26563a --- /dev/null +++ b/easybuild/easyconfigs/g/GATK/GATK-3.3-0-Java-1.8.0_66.eb @@ -0,0 +1,42 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'Tarball' + +name = 'GATK' +version = '3.3-0' + +homepage = 'http://www.broadinstitute.org/gatk/' +description = """The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute + to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, + with a primary focus on variant discovery and genotyping as well as strong emphasis on + data quality assurance. Its robust architecture, powerful processing engine and + high-performance computing features make it capable of taking on projects of any size.""" + +toolchain = {'name': 'dummy', 'version': ''} + +# download manually from http://www.broadinstitute.org/gatk/download +sources = ['GenomeAnalysisTK-%(version)s.tar.bz2'] + +java = 'Java' +javaver = '1.8.0_66' +versionsuffix = '-%s-%s' % (java, javaver) +dependencies = [(java, javaver)] + +modloadmsg = """To execute GATK run: java -jar \\$EBROOTGATK/GenomeAnalysisTK.jar""" + +sanity_check_paths = { + 'files': ["GenomeAnalysisTK.jar"], + 'dirs': ["resources"], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_66.eb b/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_66.eb new file mode 100644 index 0000000000000000000000000000000000000000..adf96fa7cf2133ef49c2dcc7b77056ce4fc16493 --- /dev/null +++ b/easybuild/easyconfigs/g/GATK/GATK-3.5-Java-1.8.0_66.eb @@ -0,0 +1,42 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB +# Authors:: George Tsouloupas , Fotis Georgatos , Kenneth Hoste (UGent) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'Tarball' + +name = 'GATK' +version = '3.5' + +homepage = 'http://www.broadinstitute.org/gatk/' +description = """The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute + to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, + with a primary focus on variant discovery and genotyping as well as strong emphasis on + data quality assurance. Its robust architecture, powerful processing engine and + high-performance computing features make it capable of taking on projects of any size.""" + +toolchain = {'name': 'dummy', 'version': ''} + +# download manually from http://www.broadinstitute.org/gatk/download +sources = ['GenomeAnalysisTK-%(version)s.tar.bz2'] + +java = 'Java' +javaver = '1.8.0_66' +versionsuffix = '-%s-%s' % (java, javaver) +dependencies = [(java, javaver)] + +modloadmsg = """To execute GATK run: java -jar \\$EBROOTGATK/GenomeAnalysisTK.jar""" + +sanity_check_paths = { + 'files': ["GenomeAnalysisTK.jar"], + 'dirs': ["resources"], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.2.3.eb b/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.2.3.eb index 8bb06bd90a35aaeb7a12ba19b72e6356cbf63681..3b725d6c3c0e1437e95f65b23edbe8e231a195a2 100644 --- a/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.2.3.eb +++ b/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.2.3.eb @@ -100,8 +100,8 @@ modextrapaths = {'PYTHONPATH': ['lib/python%s/site-packages' % pyshortver, 'lib6 full_sanity_check = True sanity_check_paths = { - 'files': ['bin/gc3utils'], - 'dirs': ['lib/python%(pyver)s/site-packages/gc3pie-%%(version)s-py%(pyver)s.egg/gc3libs' % {'pyver': pyshortver}], + 'files': ['bin/gc3utils'], + 'dirs': ['lib/python%(pyver)s/site-packages/gc3pie-%%(version)s-py%(pyver)s.egg/gc3libs' % {'pyver': pyshortver}], } sanity_check_commands = [('gc3utils', 'info --version')] diff --git a/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.3.eb b/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.3.eb index 6fee6c35e89d1154273ceb311f5dbea15c59d1a6..662fb134c28a876be1cd49172e1f53943cdf423c 100644 --- a/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.3.eb +++ b/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.3.eb @@ -101,9 +101,9 @@ full_sanity_check = True eggname = 'gc3pie-%%(version)s-py%s.egg' % pyver sanity_check_paths = { - 'files': ['bin/gc3utils', - ('lib/python%s/site-packages/%s' % (pyver, eggname), 'lib64/python%s/site-packages/%s' % (pyver, eggname))], - 'dirs': [], + 'files': ['bin/gc3utils', + ('lib/python%s/site-packages/%s' % (pyver, eggname), 'lib64/python%s/site-packages/%s' % (pyver, eggname))], + 'dirs': [], } sanity_check_commands = [('gc3utils', 'info --version')] diff --git a/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.4.0.eb b/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.4.0.eb index 8a1d9386f8ef8d4d2d480e4fec0bd2bcf8149847..b08b112eb7d5032d1720f3abefc858ed8f45dbef 100644 --- a/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.4.0.eb +++ b/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.4.0.eb @@ -101,9 +101,9 @@ full_sanity_check = True eggname = 'gc3pie-%%(version)s-py%s.egg' % pyver sanity_check_paths = { - 'files': ['bin/gc3utils', - ('lib/python%s/site-packages/%s' % (pyver, eggname), 'lib64/python%s/site-packages/%s' % (pyver, eggname))], - 'dirs': [], + 'files': ['bin/gc3utils', + ('lib/python%s/site-packages/%s' % (pyver, eggname), 'lib64/python%s/site-packages/%s' % (pyver, eggname))], + 'dirs': [], } sanity_check_commands = [('gc3utils', 'info --version')] diff --git a/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.4.1.eb b/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.4.1.eb index b62aa2387d6f8806ade0be67e3e1375fbc1476a4..92f6d885db252e11fa3d669838d30832eb0b7ce5 100644 --- a/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.4.1.eb +++ b/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.4.1.eb @@ -101,9 +101,9 @@ full_sanity_check = True eggname = 'gc3pie-%%(version)s-py%s.egg' % pyver sanity_check_paths = { - 'files': ['bin/gc3utils', - ('lib/python%s/site-packages/%s' % (pyver, eggname), 'lib64/python%s/site-packages/%s' % (pyver, eggname))], - 'dirs': [], + 'files': ['bin/gc3utils', + ('lib/python%s/site-packages/%s' % (pyver, eggname), 'lib64/python%s/site-packages/%s' % (pyver, eggname))], + 'dirs': [], } sanity_check_commands = [('gc3utils', 'info --version')] diff --git a/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.4.2.eb b/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.4.2.eb index e73e2257cc55e8b263e900b27ee5702259fc5d32..e5720c5610cff3f8dfcf833c52d6ffcb2f8e6541 100644 --- a/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.4.2.eb +++ b/easybuild/easyconfigs/g/GC3Pie/GC3Pie-2.4.2.eb @@ -101,9 +101,9 @@ full_sanity_check = True eggname = 'gc3pie-%%(version)s-py%s.egg' % pyver sanity_check_paths = { - 'files': ['bin/gc3utils', - ('lib/python%s/site-packages/%s' % (pyver, eggname), 'lib64/python%s/site-packages/%s' % (pyver, eggname))], - 'dirs': [], + 'files': ['bin/gc3utils', + ('lib/python%s/site-packages/%s' % (pyver, eggname), 'lib64/python%s/site-packages/%s' % (pyver, eggname))], + 'dirs': [], } sanity_check_commands = [('gc3utils', 'info --version')] diff --git a/easybuild/easyconfigs/g/GCC/GCC-5.3.0.eb b/easybuild/easyconfigs/g/GCC/GCC-5.3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..83ebb4cb78dc3d2bf23d1c15f2127d44fed2de6e --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/GCC-5.3.0.eb @@ -0,0 +1,49 @@ +name = 'GCC' +version = '5.3.0' + +homepage = 'http://gcc.gnu.org/' +description = """The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, + as well as libraries for these languages (libstdc++, libgcj,...).""" + +toolchain = {'name': 'dummy', 'version': ''} + +mpfr_version = '3.1.3' + +source_urls = [ + 'http://ftpmirror.gnu.org/%(namelower)s/%(namelower)s-%(version)s', # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gmp', # idem for GMP + 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR + 'http://www.multiprecision.org/mpc/download', # MPC official + 'ftp://gcc.gnu.org/pub/gcc/infrastructure/', # GCC dependencies + 'http://gcc.cybermirror.org/infrastructure/', # HTTP mirror for GCC dependencies +] + +sources = [ + SOURCELOWER_TAR_BZ2, + 'gmp-6.1.0.tar.bz2', + 'mpfr-%s.tar.gz' % mpfr_version, + 'mpc-1.0.3.tar.gz', + 'isl-0.15.tar.bz2', +] + +patches = [('mpfr-%s-allpatches-20151029.patch' % mpfr_version, '../mpfr-%s' % mpfr_version)] + +builddependencies = [('M4', '1.4.17')] + +checksums = [ + 'c9616fd448f980259c31de613e575719', # gcc-5.3.0.tar.bz2 + '86ee6e54ebfc4a90b643a65e402c4048', # gmp-6.1.0.tar.bz2 + '7b650781f0a7c4a62e9bc8bdaaa0018b', # mpfr-3.1.3.tar.gz + 'd6a1d5f8ddea3abd2cc3e98f58352d26', # mpc-1.0.3.tar.gz + '8428efbbc6f6e2810ce5c1ba73ecf98c', # isl-0.15.tar.bz2 + '6476b450c3db177b2250f3549362380e', # mpfr-3.1.3-allpatches-20151029.patch +] + +languages = ['c', 'c++', 'fortran'] + +withisl = True + +# building GCC sometimes fails if make parallelism is too high, so let's limit it +maxparallel = 4 + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GCC/mpfr-3.1.3-allpatches-20151029.patch b/easybuild/easyconfigs/g/GCC/mpfr-3.1.3-allpatches-20151029.patch new file mode 100644 index 0000000000000000000000000000000000000000..891831f521e3fc32e59adb76f4dfe42083df1538 --- /dev/null +++ b/easybuild/easyconfigs/g/GCC/mpfr-3.1.3-allpatches-20151029.patch @@ -0,0 +1,1830 @@ +diff -Naurd mpfr-3.1.3-a/PATCHES mpfr-3.1.3-b/PATCHES +--- mpfr-3.1.3-a/PATCHES 2015-07-02 10:49:23.950112879 +0000 ++++ mpfr-3.1.3-b/PATCHES 2015-07-02 10:49:24.042113845 +0000 +@@ -0,0 +1 @@ ++lngamma-and-doc +diff -Naurd mpfr-3.1.3-a/VERSION mpfr-3.1.3-b/VERSION +--- mpfr-3.1.3-a/VERSION 2015-06-19 19:55:09.000000000 +0000 ++++ mpfr-3.1.3-b/VERSION 2015-07-02 10:49:24.042113845 +0000 +@@ -1 +1 @@ +-3.1.3 ++3.1.3-p1 +diff -Naurd mpfr-3.1.3-a/doc/mpfr.texi mpfr-3.1.3-b/doc/mpfr.texi +--- mpfr-3.1.3-a/doc/mpfr.texi 2015-06-19 19:55:11.000000000 +0000 ++++ mpfr-3.1.3-b/doc/mpfr.texi 2015-07-02 10:49:24.018113593 +0000 +@@ -810,13 +810,17 @@ + When the input point is in the closure of the domain of the mathematical + function and an input argument is +0 (resp.@: @minus{}0), one considers + the limit when the corresponding argument approaches 0 from above +-(resp.@: below). If the limit is not defined (e.g., @code{mpfr_log} on +-@minus{}0), the behavior is specified in the description of the MPFR function. ++(resp.@: below), if possible. If the limit is not defined (e.g., ++@code{mpfr_sqrt} and @code{mpfr_log} on @minus{}0), the behavior is ++specified in the description of the MPFR function, but must be consistent ++with the rule from the above paragraph (e.g., @code{mpfr_log} on @pom{}0 ++gives @minus{}Inf). + + When the result is equal to 0, its sign is determined by considering the + limit as if the input point were not in the domain: If one approaches 0 + from above (resp.@: below), the result is +0 (resp.@: @minus{}0); +-for example, @code{mpfr_sin} on +0 gives +0. ++for example, @code{mpfr_sin} on @minus{}0 gives @minus{}0 and ++@code{mpfr_acos} on 1 gives +0 (in all rounding modes). + In the other cases, the sign is specified in the description of the MPFR + function; for example @code{mpfr_max} on @minus{}0 and +0 gives +0. + +@@ -832,8 +836,8 @@ + @c that advantages in practice), like for any bug fix. + Example: @code{mpfr_hypot} on (NaN,0) gives NaN, but @code{mpfr_hypot} + on (NaN,+Inf) gives +Inf (as specified in @ref{Special Functions}), +-since for any finite input @var{x}, @code{mpfr_hypot} on (@var{x},+Inf) +-gives +Inf. ++since for any finite or infinite input @var{x}, @code{mpfr_hypot} on ++(@var{x},+Inf) gives +Inf. + + @node Exceptions, Memory Handling, Floating-Point Values on Special Numbers, MPFR Basics + @comment node-name, next, previous, up +@@ -1581,7 +1585,8 @@ + @deftypefunx int mpfr_add_z (mpfr_t @var{rop}, mpfr_t @var{op1}, mpz_t @var{op2}, mpfr_rnd_t @var{rnd}) + @deftypefunx int mpfr_add_q (mpfr_t @var{rop}, mpfr_t @var{op1}, mpq_t @var{op2}, mpfr_rnd_t @var{rnd}) + Set @var{rop} to @math{@var{op1} + @var{op2}} rounded in the direction +-@var{rnd}. For types having no signed zero, it is considered unsigned ++@var{rnd}. The IEEE-754 rules are used, in particular for signed zeros. ++But for types having no signed zeros, 0 is considered unsigned + (i.e., (+0) + 0 = (+0) and (@minus{}0) + 0 = (@minus{}0)). + The @code{mpfr_add_d} function assumes that the radix of the @code{double} type + is a power of 2, with a precision at most that declared by the C implementation +@@ -1599,7 +1604,8 @@ + @deftypefunx int mpfr_sub_z (mpfr_t @var{rop}, mpfr_t @var{op1}, mpz_t @var{op2}, mpfr_rnd_t @var{rnd}) + @deftypefunx int mpfr_sub_q (mpfr_t @var{rop}, mpfr_t @var{op1}, mpq_t @var{op2}, mpfr_rnd_t @var{rnd}) + Set @var{rop} to @math{@var{op1} - @var{op2}} rounded in the direction +-@var{rnd}. For types having no signed zero, it is considered unsigned ++@var{rnd}. The IEEE-754 rules are used, in particular for signed zeros. ++But for types having no signed zeros, 0 is considered unsigned + (i.e., (+0) @minus{} 0 = (+0), (@minus{}0) @minus{} 0 = (@minus{}0), + 0 @minus{} (+0) = (@minus{}0) and 0 @minus{} (@minus{}0) = (+0)). + The same restrictions than for @code{mpfr_add_d} apply to @code{mpfr_d_sub} +@@ -1615,7 +1621,7 @@ + Set @var{rop} to @math{@var{op1} @GMPtimes{} @var{op2}} rounded in the + direction @var{rnd}. + When a result is zero, its sign is the product of the signs of the operands +-(for types having no signed zero, it is considered positive). ++(for types having no signed zeros, 0 is considered positive). + The same restrictions than for @code{mpfr_add_d} apply to @code{mpfr_mul_d}. + @end deftypefun + +@@ -1635,7 +1641,7 @@ + @deftypefunx int mpfr_div_q (mpfr_t @var{rop}, mpfr_t @var{op1}, mpq_t @var{op2}, mpfr_rnd_t @var{rnd}) + Set @var{rop} to @math{@var{op1}/@var{op2}} rounded in the direction @var{rnd}. + When a result is zero, its sign is the product of the signs of the operands +-(for types having no signed zero, it is considered positive). ++(for types having no signed zeros, 0 is considered positive). + The same restrictions than for @code{mpfr_add_d} apply to @code{mpfr_d_div} + and @code{mpfr_div_d}. + @end deftypefun +@@ -1643,15 +1649,18 @@ + @deftypefun int mpfr_sqrt (mpfr_t @var{rop}, mpfr_t @var{op}, mpfr_rnd_t @var{rnd}) + @deftypefunx int mpfr_sqrt_ui (mpfr_t @var{rop}, unsigned long int @var{op}, mpfr_rnd_t @var{rnd}) + Set @var{rop} to @m{\sqrt{@var{op}}, the square root of @var{op}} +-rounded in the direction @var{rnd} (set @var{rop} to @minus{}0 if @var{op} is +-@minus{}0, to be consistent with the IEEE 754 standard). ++rounded in the direction @var{rnd}. Set @var{rop} to @minus{}0 if ++@var{op} is @minus{}0, to be consistent with the IEEE 754 standard. + Set @var{rop} to NaN if @var{op} is negative. + @end deftypefun + + @deftypefun int mpfr_rec_sqrt (mpfr_t @var{rop}, mpfr_t @var{op}, mpfr_rnd_t @var{rnd}) + Set @var{rop} to @m{1/\sqrt{@var{op}}, the reciprocal square root of @var{op}} +-rounded in the direction @var{rnd}. Set @var{rop} to +Inf if @var{op} is +-@pom{}0, +0 if @var{op} is +Inf, and NaN if @var{op} is negative. ++rounded in the direction @var{rnd}. Set @var{rop} to +Inf if @var{op} is ++@pom{}0, +0 if @var{op} is +Inf, and NaN if @var{op} is negative. Warning! ++Therefore the result on @minus{}0 is different from the one of the rSqrt ++function recommended by the IEEE 754-2008 standard (Section 9.2.1), which ++is @minus{}Inf instead of +Inf. + @end deftypefun + + @deftypefun int mpfr_cbrt (mpfr_t @var{rop}, mpfr_t @var{op}, mpfr_rnd_t @var{rnd}) +@@ -1832,7 +1841,9 @@ + @m{\log_2 @var{op}, log2(@var{op})} or + @m{\log_{10} @var{op}, log10(@var{op})}, respectively, + rounded in the direction @var{rnd}. +-Set @var{rop} to @minus{}Inf if @var{op} is @minus{}0 ++Set @var{rop} to +0 if @var{op} is 1 (in all rounding modes), ++for consistency with the ISO C99 and IEEE 754-2008 standards. ++Set @var{rop} to @minus{}Inf if @var{op} is @pom{}0 + (i.e., the sign of the zero has no influence on the result). + @end deftypefun + +@@ -2003,8 +2014,11 @@ + @deftypefun int mpfr_lngamma (mpfr_t @var{rop}, mpfr_t @var{op}, mpfr_rnd_t @var{rnd}) + Set @var{rop} to the value of the logarithm of the Gamma function on @var{op}, + rounded in the direction @var{rnd}. +-When @math{@minus{}2@var{k}@minus{}1 @le{} @var{op} @le{} @minus{}2@var{k}}, +-@var{k} being a non-negative integer, @var{rop} is set to NaN. ++When @var{op} is 1 or 2, set @var{rop} to +0 (in all rounding modes). ++When @var{op} is an infinity or a nonpositive integer, set @var{rop} to +Inf, ++following the general rules on special values. ++When @math{@minus{}2@var{k}@minus{}1 < @var{op} < @minus{}2@var{k}}, ++@var{k} being a nonnegative integer, set @var{rop} to NaN@. + See also @code{mpfr_lgamma}. + @end deftypefun + +@@ -2012,10 +2026,11 @@ + Set @var{rop} to the value of the logarithm of the absolute value of the + Gamma function on @var{op}, rounded in the direction @var{rnd}. The sign + (1 or @minus{}1) of Gamma(@var{op}) is returned in the object pointed to +-by @var{signp}. When @var{op} is an infinity or a non-positive integer, set +-@var{rop} to +Inf. When @var{op} is NaN, @minus{}Inf or a negative integer, +-*@var{signp} is undefined, and when @var{op} is @pom{}0, *@var{signp} is +-the sign of the zero. ++by @var{signp}. ++When @var{op} is 1 or 2, set @var{rop} to +0 (in all rounding modes). ++When @var{op} is an infinity or a nonpositive integer, set @var{rop} to +Inf. ++When @var{op} is NaN, @minus{}Inf or a negative integer, *@var{signp} is ++undefined, and when @var{op} is @pom{}0, *@var{signp} is the sign of the zero. + @end deftypefun + + @deftypefun int mpfr_digamma (mpfr_t @var{rop}, mpfr_t @var{op}, mpfr_rnd_t @var{rnd}) +@@ -2064,7 +2079,10 @@ + @deftypefunx int mpfr_fms (mpfr_t @var{rop}, mpfr_t @var{op1}, mpfr_t @var{op2}, mpfr_t @var{op3}, mpfr_rnd_t @var{rnd}) + Set @var{rop} to @math{(@var{op1} @GMPtimes{} @var{op2}) + @var{op3}} + (resp.@: @math{(@var{op1} @GMPtimes{} @var{op2}) - @var{op3}}) +-rounded in the direction @var{rnd}. ++rounded in the direction @var{rnd}. Concerning special values (signed zeros, ++infinities, NaN), these functions behave like a multiplication followed by a ++separate addition or subtraction. That is, the fused operation matters only ++for rounding. + @end deftypefun + + @deftypefun int mpfr_agm (mpfr_t @var{rop}, mpfr_t @var{op1}, mpfr_t @var{op2}, mpfr_rnd_t @var{rnd}) +@@ -2089,8 +2107,8 @@ + i.e., $\sqrt{x^2+y^2}$, + @end tex + rounded in the direction @var{rnd}. +-Special values are handled as described in Section F.9.4.3 of +-the ISO C99 and IEEE 754-2008 standards: ++Special values are handled as described in the ISO C99 (Section F.9.4.3) ++and IEEE 754-2008 (Section 9.2.1) standards: + If @var{x} or @var{y} is an infinity, then +Inf is returned in @var{rop}, + even if the other number is NaN. + @end deftypefun +diff -Naurd mpfr-3.1.3-a/doc/mpfr.info mpfr-3.1.3-b/doc/mpfr.info +--- mpfr-3.1.3-a/doc/mpfr.info 2015-06-19 19:55:53.000000000 +0000 ++++ mpfr-3.1.3-b/doc/mpfr.info 2015-07-02 10:49:38.718267817 +0000 +@@ -1,4 +1,4 @@ +-This is mpfr.info, produced by makeinfo version 5.2 from mpfr.texi. ++This is mpfr.info, produced by makeinfo version 6.0 from mpfr.texi. + + This manual documents how to install and use the Multiple Precision + Floating-Point Reliable Library, version 3.1.3. +@@ -55,7 +55,7 @@ + MPFR Copying Conditions + *********************** + +-The GNU MPFR library (or MPFR for short) is "free"; this means that ++The GNU MPFR library (or MPFR for short) is “free”; this means that + everyone is free to use it and free to redistribute it on a free basis. + The library is not in the public domain; it is copyrighted and there are + restrictions on its distribution, but these restrictions are designed to +@@ -418,7 +418,7 @@ + 4.2 Nomenclature and Types + ========================== + +-A "floating-point number", or "float" for short, is an arbitrary ++A “floating-point number”, or “float” for short, is an arbitrary + precision significand (also called mantissa) with a limited precision + exponent. The C data type for such objects is ‘mpfr_t’ (internally + defined as a one-element array of a structure, and ‘mpfr_ptr’ is the C +@@ -432,7 +432,7 @@ + to the other functions supported by MPFR. Unless documented otherwise, + the sign bit of a NaN is unspecified. + +-The "precision" is the number of bits used to represent the significand ++The “precision” is the number of bits used to represent the significand + of a floating-point number; the corresponding C data type is + ‘mpfr_prec_t’. The precision can be any integer between ‘MPFR_PREC_MIN’ + and ‘MPFR_PREC_MAX’. In the current implementation, ‘MPFR_PREC_MIN’ is +@@ -446,7 +446,7 @@ + may abort, crash or have undefined behavior (depending on your C + implementation). + +-The "rounding mode" specifies the way to round the result of a ++The “rounding mode” specifies the way to round the result of a + floating-point operation, in case the exact result can not be + represented exactly in the destination significand; the corresponding C + data type is ‘mpfr_rnd_t’. +@@ -499,14 +499,14 @@ + representable numbers, it is rounded to the one with the least + significant bit set to zero. For example, the number 2.5, which is + represented by (10.1) in binary, is rounded to (10.0)=2 with a precision +-of two bits, and not to (11.0)=3. This rule avoids the "drift" ++of two bits, and not to (11.0)=3. This rule avoids the “drift” + phenomenon mentioned by Knuth in volume 2 of The Art of Computer + Programming (Section 4.2.2). + + Most MPFR functions take as first argument the destination variable, + as second and following arguments the input variables, as last argument + a rounding mode, and have a return value of type ‘int’, called the +-"ternary value". The value stored in the destination variable is ++“ternary value”. The value stored in the destination variable is + correctly rounded, i.e., MPFR behaves as if it computed the result with + an infinite precision, then rounded it to the precision of this + variable. The input variables are regarded as exact (in particular, +@@ -572,15 +572,18 @@ + When the input point is in the closure of the domain of the + mathematical function and an input argument is +0 (resp. −0), one + considers the limit when the corresponding argument approaches 0 from +-above (resp. below). If the limit is not defined (e.g., ‘mpfr_log’ on +-−0), the behavior is specified in the description of the MPFR function. ++above (resp. below), if possible. If the limit is not defined (e.g., ++‘mpfr_sqrt’ and ‘mpfr_log’ on −0), the behavior is specified in the ++description of the MPFR function, but must be consistent with the rule ++from the above paragraph (e.g., ‘mpfr_log’ on ±0 gives −Inf). + + When the result is equal to 0, its sign is determined by considering + the limit as if the input point were not in the domain: If one + approaches 0 from above (resp. below), the result is +0 (resp. −0); for +-example, ‘mpfr_sin’ on +0 gives +0. In the other cases, the sign is +-specified in the description of the MPFR function; for example +-‘mpfr_max’ on −0 and +0 gives +0. ++example, ‘mpfr_sin’ on −0 gives −0 and ‘mpfr_acos’ on 1 gives +0 (in all ++rounding modes). In the other cases, the sign is specified in the ++description of the MPFR function; for example ‘mpfr_max’ on −0 and +0 ++gives +0. + + When the input point is not in the closure of the domain of the + function, the result is NaN. Example: ‘mpfr_sqrt’ on −17 gives NaN. +@@ -590,8 +593,8 @@ + numbers; such a case is always explicitly specified in *note MPFR + Interface::. Example: ‘mpfr_hypot’ on (NaN,0) gives NaN, but + ‘mpfr_hypot’ on (NaN,+Inf) gives +Inf (as specified in *note Special +-Functions::), since for any finite input X, ‘mpfr_hypot’ on (X,+Inf) +-gives +Inf. ++Functions::), since for any finite or infinite input X, ‘mpfr_hypot’ on ++(X,+Inf) gives +Inf. + +  + File: mpfr.info, Node: Exceptions, Next: Memory Handling, Prev: Floating-Point Values on Special Numbers, Up: MPFR Basics +@@ -1253,8 +1256,9 @@ + mpfr_rnd_t RND) + -- Function: int mpfr_add_q (mpfr_t ROP, mpfr_t OP1, mpq_t OP2, + mpfr_rnd_t RND) +- Set ROP to OP1 + OP2 rounded in the direction RND. For types +- having no signed zero, it is considered unsigned (i.e., (+0) + 0 = ++ Set ROP to OP1 + OP2 rounded in the direction RND. The IEEE-754 ++ rules are used, in particular for signed zeros. But for types ++ having no signed zeros, 0 is considered unsigned (i.e., (+0) + 0 = + (+0) and (−0) + 0 = (−0)). The ‘mpfr_add_d’ function assumes that + the radix of the ‘double’ type is a power of 2, with a precision at + most that declared by the C implementation (macro +@@ -1280,8 +1284,9 @@ + mpfr_rnd_t RND) + -- Function: int mpfr_sub_q (mpfr_t ROP, mpfr_t OP1, mpq_t OP2, + mpfr_rnd_t RND) +- Set ROP to OP1 - OP2 rounded in the direction RND. For types +- having no signed zero, it is considered unsigned (i.e., (+0) − 0 = ++ Set ROP to OP1 - OP2 rounded in the direction RND. The IEEE-754 ++ rules are used, in particular for signed zeros. But for types ++ having no signed zeros, 0 is considered unsigned (i.e., (+0) − 0 = + (+0), (−0) − 0 = (−0), 0 − (+0) = (−0) and 0 − (−0) = (+0)). The + same restrictions than for ‘mpfr_add_d’ apply to ‘mpfr_d_sub’ and + ‘mpfr_sub_d’. +@@ -1300,7 +1305,7 @@ + mpfr_rnd_t RND) + Set ROP to OP1 times OP2 rounded in the direction RND. When a + result is zero, its sign is the product of the signs of the +- operands (for types having no signed zero, it is considered ++ operands (for types having no signed zeros, 0 is considered + positive). The same restrictions than for ‘mpfr_add_d’ apply to + ‘mpfr_mul_d’. + +@@ -1327,21 +1332,24 @@ + mpfr_rnd_t RND) + Set ROP to OP1/OP2 rounded in the direction RND. When a result is + zero, its sign is the product of the signs of the operands (for +- types having no signed zero, it is considered positive). The same ++ types having no signed zeros, 0 is considered positive). The same + restrictions than for ‘mpfr_add_d’ apply to ‘mpfr_d_div’ and + ‘mpfr_div_d’. + + -- Function: int mpfr_sqrt (mpfr_t ROP, mpfr_t OP, mpfr_rnd_t RND) + -- Function: int mpfr_sqrt_ui (mpfr_t ROP, unsigned long int OP, + mpfr_rnd_t RND) +- Set ROP to the square root of OP rounded in the direction RND (set +- ROP to −0 if OP is −0, to be consistent with the IEEE 754 +- standard). Set ROP to NaN if OP is negative. ++ Set ROP to the square root of OP rounded in the direction RND. Set ++ ROP to −0 if OP is −0, to be consistent with the IEEE 754 standard. ++ Set ROP to NaN if OP is negative. + + -- Function: int mpfr_rec_sqrt (mpfr_t ROP, mpfr_t OP, mpfr_rnd_t RND) + Set ROP to the reciprocal square root of OP rounded in the + direction RND. Set ROP to +Inf if OP is ±0, +0 if OP is +Inf, and +- NaN if OP is negative. ++ NaN if OP is negative. Warning! Therefore the result on −0 is ++ different from the one of the rSqrt function recommended by the ++ IEEE 754-2008 standard (Section 9.2.1), which is −Inf instead of ++ +Inf. + + -- Function: int mpfr_cbrt (mpfr_t ROP, mpfr_t OP, mpfr_rnd_t RND) + -- Function: int mpfr_root (mpfr_t ROP, mpfr_t OP, unsigned long int K, +@@ -1515,8 +1523,10 @@ + -- Function: int mpfr_log2 (mpfr_t ROP, mpfr_t OP, mpfr_rnd_t RND) + -- Function: int mpfr_log10 (mpfr_t ROP, mpfr_t OP, mpfr_rnd_t RND) + Set ROP to the natural logarithm of OP, log2(OP) or log10(OP), +- respectively, rounded in the direction RND. Set ROP to −Inf if OP +- is −0 (i.e., the sign of the zero has no influence on the result). ++ respectively, rounded in the direction RND. Set ROP to +0 if OP is ++ 1 (in all rounding modes), for consistency with the ISO C99 and ++ IEEE 754-2008 standards. Set ROP to −Inf if OP is ±0 (i.e., the ++ sign of the zero has no influence on the result). + + -- Function: int mpfr_exp (mpfr_t ROP, mpfr_t OP, mpfr_rnd_t RND) + -- Function: int mpfr_exp2 (mpfr_t ROP, mpfr_t OP, mpfr_rnd_t RND) +@@ -1649,17 +1659,21 @@ + + -- Function: int mpfr_lngamma (mpfr_t ROP, mpfr_t OP, mpfr_rnd_t RND) + Set ROP to the value of the logarithm of the Gamma function on OP, +- rounded in the direction RND. When −2K−1 <= OP <= −2K, K being a +- non-negative integer, ROP is set to NaN. See also ‘mpfr_lgamma’. ++ rounded in the direction RND. When OP is 1 or 2, set ROP to +0 (in ++ all rounding modes). When OP is an infinity or a nonpositive ++ integer, set ROP to +Inf, following the general rules on special ++ values. When −2K−1 < OP < −2K, K being a nonnegative integer, set ++ ROP to NaN. See also ‘mpfr_lgamma’. + + -- Function: int mpfr_lgamma (mpfr_t ROP, int *SIGNP, mpfr_t OP, + mpfr_rnd_t RND) + Set ROP to the value of the logarithm of the absolute value of the + Gamma function on OP, rounded in the direction RND. The sign (1 or + −1) of Gamma(OP) is returned in the object pointed to by SIGNP. +- When OP is an infinity or a non-positive integer, set ROP to +Inf. +- When OP is NaN, −Inf or a negative integer, *SIGNP is undefined, +- and when OP is ±0, *SIGNP is the sign of the zero. ++ When OP is 1 or 2, set ROP to +0 (in all rounding modes). When OP ++ is an infinity or a nonpositive integer, set ROP to +Inf. When OP ++ is NaN, −Inf or a negative integer, *SIGNP is undefined, and when ++ OP is ±0, *SIGNP is the sign of the zero. + + -- Function: int mpfr_digamma (mpfr_t ROP, mpfr_t OP, mpfr_rnd_t RND) + Set ROP to the value of the Digamma (sometimes also called Psi) +@@ -1703,7 +1717,10 @@ + -- Function: int mpfr_fms (mpfr_t ROP, mpfr_t OP1, mpfr_t OP2, mpfr_t + OP3, mpfr_rnd_t RND) + Set ROP to (OP1 times OP2) + OP3 (resp. (OP1 times OP2) - OP3) +- rounded in the direction RND. ++ rounded in the direction RND. Concerning special values (signed ++ zeros, infinities, NaN), these functions behave like a ++ multiplication followed by a separate addition or subtraction. ++ That is, the fused operation matters only for rounding. + + -- Function: int mpfr_agm (mpfr_t ROP, mpfr_t OP1, mpfr_t OP2, + mpfr_rnd_t RND) +@@ -1717,9 +1734,10 @@ + RND) + Set ROP to the Euclidean norm of X and Y, i.e., the square root of + the sum of the squares of X and Y, rounded in the direction RND. +- Special values are handled as described in Section F.9.4.3 of the +- ISO C99 and IEEE 754-2008 standards: If X or Y is an infinity, then +- +Inf is returned in ROP, even if the other number is NaN. ++ Special values are handled as described in the ISO C99 (Section ++ F.9.4.3) and IEEE 754-2008 (Section 9.2.1) standards: If X or Y is ++ an infinity, then +Inf is returned in ROP, even if the other number ++ is NaN. + + -- Function: int mpfr_ai (mpfr_t ROP, mpfr_t X, mpfr_rnd_t RND) + Set ROP to the value of the Airy function Ai on X, rounded in the +@@ -2670,7 +2688,7 @@ + 5.16 Internals + ============== + +-A "limb" means the part of a multi-precision number that fits in a ++A “limb” means the part of a multi-precision number that fits in a + single word. Usually a limb contains 32 or 64 bits. The C data type + for a limb is ‘mp_limb_t’. + +@@ -3140,7 +3158,7 @@ + 0. PREAMBLE + + The purpose of this License is to make a manual, textbook, or other +- functional and useful document "free" in the sense of freedom: to ++ functional and useful document “free” in the sense of freedom: to + assure everyone the effective freedom to copy and redistribute it, + with or without modifying it, either commercially or + noncommercially. Secondarily, this License preserves for the +@@ -3655,9 +3673,9 @@ + * Menu: + + * mpfr_abs: Basic Arithmetic Functions. +- (line 160) +-* mpfr_acos: Special Functions. (line 51) +-* mpfr_acosh: Special Functions. (line 115) ++ (line 165) ++* mpfr_acos: Special Functions. (line 53) ++* mpfr_acosh: Special Functions. (line 117) + * mpfr_add: Basic Arithmetic Functions. + (line 6) + * mpfr_add_d: Basic Arithmetic Functions. +@@ -3670,15 +3688,15 @@ + (line 8) + * mpfr_add_z: Basic Arithmetic Functions. + (line 14) +-* mpfr_agm: Special Functions. (line 210) +-* mpfr_ai: Special Functions. (line 226) +-* mpfr_asin: Special Functions. (line 52) +-* mpfr_asinh: Special Functions. (line 116) ++* mpfr_agm: Special Functions. (line 219) ++* mpfr_ai: Special Functions. (line 236) ++* mpfr_asin: Special Functions. (line 54) ++* mpfr_asinh: Special Functions. (line 118) + * mpfr_asprintf: Formatted Output Functions. + (line 193) +-* mpfr_atan: Special Functions. (line 53) +-* mpfr_atan2: Special Functions. (line 63) +-* mpfr_atanh: Special Functions. (line 117) ++* mpfr_atan: Special Functions. (line 55) ++* mpfr_atan2: Special Functions. (line 65) ++* mpfr_atanh: Special Functions. (line 119) + * mpfr_buildopt_decimal_p: Miscellaneous Functions. + (line 162) + * mpfr_buildopt_gmpinternals_p: Miscellaneous Functions. +@@ -3690,7 +3708,7 @@ + * mpfr_can_round: Rounding Related Functions. + (line 39) + * mpfr_cbrt: Basic Arithmetic Functions. +- (line 108) ++ (line 113) + * mpfr_ceil: Integer Related Functions. + (line 7) + * mpfr_check_range: Exception Related Functions. +@@ -3735,18 +3753,18 @@ + (line 27) + * mpfr_cmp_z: Comparison Functions. + (line 11) +-* mpfr_const_catalan: Special Functions. (line 237) +-* mpfr_const_euler: Special Functions. (line 236) +-* mpfr_const_log2: Special Functions. (line 234) +-* mpfr_const_pi: Special Functions. (line 235) ++* mpfr_const_catalan: Special Functions. (line 247) ++* mpfr_const_euler: Special Functions. (line 246) ++* mpfr_const_log2: Special Functions. (line 244) ++* mpfr_const_pi: Special Functions. (line 245) + * mpfr_copysign: Miscellaneous Functions. + (line 109) +-* mpfr_cos: Special Functions. (line 29) +-* mpfr_cosh: Special Functions. (line 95) +-* mpfr_cot: Special Functions. (line 47) +-* mpfr_coth: Special Functions. (line 111) +-* mpfr_csc: Special Functions. (line 46) +-* mpfr_csch: Special Functions. (line 110) ++* mpfr_cos: Special Functions. (line 31) ++* mpfr_cosh: Special Functions. (line 97) ++* mpfr_cot: Special Functions. (line 49) ++* mpfr_coth: Special Functions. (line 113) ++* mpfr_csc: Special Functions. (line 48) ++* mpfr_csch: Special Functions. (line 112) + * mpfr_custom_get_exp: Custom Interface. (line 75) + * mpfr_custom_get_kind: Custom Interface. (line 65) + * mpfr_custom_get_significand: Custom Interface. (line 70) +@@ -3756,47 +3774,47 @@ + * mpfr_custom_move: Custom Interface. (line 82) + * MPFR_DECL_INIT: Initialization Functions. + (line 74) +-* mpfr_digamma: Special Functions. (line 166) ++* mpfr_digamma: Special Functions. (line 172) + * mpfr_dim: Basic Arithmetic Functions. +- (line 166) ++ (line 171) + * mpfr_div: Basic Arithmetic Functions. +- (line 72) ++ (line 74) + * mpfr_divby0_p: Exception Related Functions. + (line 134) + * mpfr_div_2exp: Compatibility with MPF. + (line 49) + * mpfr_div_2si: Basic Arithmetic Functions. +- (line 181) ++ (line 186) + * mpfr_div_2ui: Basic Arithmetic Functions. +- (line 179) ++ (line 184) + * mpfr_div_d: Basic Arithmetic Functions. +- (line 84) ++ (line 86) + * mpfr_div_q: Basic Arithmetic Functions. +- (line 88) ++ (line 90) + * mpfr_div_si: Basic Arithmetic Functions. +- (line 80) ++ (line 82) + * mpfr_div_ui: Basic Arithmetic Functions. +- (line 76) ++ (line 78) + * mpfr_div_z: Basic Arithmetic Functions. +- (line 86) ++ (line 88) + * mpfr_d_div: Basic Arithmetic Functions. +- (line 82) ++ (line 84) + * mpfr_d_sub: Basic Arithmetic Functions. +- (line 35) +-* mpfr_eint: Special Functions. (line 133) ++ (line 36) ++* mpfr_eint: Special Functions. (line 135) + * mpfr_eq: Compatibility with MPF. + (line 28) + * mpfr_equal_p: Comparison Functions. + (line 59) + * mpfr_erangeflag_p: Exception Related Functions. + (line 137) +-* mpfr_erf: Special Functions. (line 177) +-* mpfr_erfc: Special Functions. (line 178) +-* mpfr_exp: Special Functions. (line 23) +-* mpfr_exp10: Special Functions. (line 25) +-* mpfr_exp2: Special Functions. (line 24) +-* mpfr_expm1: Special Functions. (line 129) +-* mpfr_fac_ui: Special Functions. (line 121) ++* mpfr_erf: Special Functions. (line 183) ++* mpfr_erfc: Special Functions. (line 184) ++* mpfr_exp: Special Functions. (line 25) ++* mpfr_exp10: Special Functions. (line 27) ++* mpfr_exp2: Special Functions. (line 26) ++* mpfr_expm1: Special Functions. (line 131) ++* mpfr_fac_ui: Special Functions. (line 123) + * mpfr_fits_intmax_p: Conversion Functions. + (line 150) + * mpfr_fits_sint_p: Conversion Functions. +@@ -3815,20 +3833,20 @@ + (line 147) + * mpfr_floor: Integer Related Functions. + (line 8) +-* mpfr_fma: Special Functions. (line 203) ++* mpfr_fma: Special Functions. (line 209) + * mpfr_fmod: Integer Related Functions. + (line 92) +-* mpfr_fms: Special Functions. (line 205) ++* mpfr_fms: Special Functions. (line 211) + * mpfr_fprintf: Formatted Output Functions. + (line 157) + * mpfr_frac: Integer Related Functions. + (line 76) +-* mpfr_free_cache: Special Functions. (line 244) ++* mpfr_free_cache: Special Functions. (line 254) + * mpfr_free_str: Conversion Functions. + (line 137) + * mpfr_frexp: Conversion Functions. + (line 45) +-* mpfr_gamma: Special Functions. (line 148) ++* mpfr_gamma: Special Functions. (line 150) + * mpfr_get_d: Conversion Functions. + (line 7) + * mpfr_get_decimal64: Conversion Functions. +@@ -3887,7 +3905,7 @@ + (line 56) + * mpfr_greater_p: Comparison Functions. + (line 55) +-* mpfr_hypot: Special Functions. (line 218) ++* mpfr_hypot: Special Functions. (line 227) + * mpfr_inexflag_p: Exception Related Functions. + (line 136) + * mpfr_inf_p: Comparison Functions. +@@ -3922,21 +3940,21 @@ + (line 31) + * mpfr_integer_p: Integer Related Functions. + (line 119) +-* mpfr_j0: Special Functions. (line 182) +-* mpfr_j1: Special Functions. (line 183) +-* mpfr_jn: Special Functions. (line 184) ++* mpfr_j0: Special Functions. (line 188) ++* mpfr_j1: Special Functions. (line 189) ++* mpfr_jn: Special Functions. (line 190) + * mpfr_lessequal_p: Comparison Functions. + (line 58) + * mpfr_lessgreater_p: Comparison Functions. + (line 64) + * mpfr_less_p: Comparison Functions. + (line 57) +-* mpfr_lgamma: Special Functions. (line 157) +-* mpfr_li2: Special Functions. (line 143) +-* mpfr_lngamma: Special Functions. (line 152) ++* mpfr_lgamma: Special Functions. (line 162) ++* mpfr_li2: Special Functions. (line 145) ++* mpfr_lngamma: Special Functions. (line 154) + * mpfr_log: Special Functions. (line 16) + * mpfr_log10: Special Functions. (line 18) +-* mpfr_log1p: Special Functions. (line 125) ++* mpfr_log1p: Special Functions. (line 127) + * mpfr_log2: Special Functions. (line 17) + * mpfr_max: Miscellaneous Functions. + (line 22) +@@ -3947,29 +3965,29 @@ + * mpfr_modf: Integer Related Functions. + (line 82) + * mpfr_mul: Basic Arithmetic Functions. +- (line 51) ++ (line 53) + * mpfr_mul_2exp: Compatibility with MPF. + (line 47) + * mpfr_mul_2si: Basic Arithmetic Functions. +- (line 174) ++ (line 179) + * mpfr_mul_2ui: Basic Arithmetic Functions. +- (line 172) ++ (line 177) + * mpfr_mul_d: Basic Arithmetic Functions. +- (line 57) ++ (line 59) + * mpfr_mul_q: Basic Arithmetic Functions. +- (line 61) ++ (line 63) + * mpfr_mul_si: Basic Arithmetic Functions. +- (line 55) ++ (line 57) + * mpfr_mul_ui: Basic Arithmetic Functions. +- (line 53) ++ (line 55) + * mpfr_mul_z: Basic Arithmetic Functions. +- (line 59) ++ (line 61) + * mpfr_nanflag_p: Exception Related Functions. + (line 135) + * mpfr_nan_p: Comparison Functions. + (line 39) + * mpfr_neg: Basic Arithmetic Functions. +- (line 159) ++ (line 164) + * mpfr_nextabove: Miscellaneous Functions. + (line 15) + * mpfr_nextbelow: Miscellaneous Functions. +@@ -3983,13 +4001,13 @@ + * mpfr_overflow_p: Exception Related Functions. + (line 133) + * mpfr_pow: Basic Arithmetic Functions. +- (line 116) ++ (line 121) + * mpfr_pow_si: Basic Arithmetic Functions. +- (line 120) ++ (line 125) + * mpfr_pow_ui: Basic Arithmetic Functions. +- (line 118) ++ (line 123) + * mpfr_pow_z: Basic Arithmetic Functions. +- (line 122) ++ (line 127) + * mpfr_prec_round: Rounding Related Functions. + (line 13) + * ‘mpfr_prec_t’: Nomenclature and Types. +@@ -3999,7 +4017,7 @@ + * mpfr_print_rnd_mode: Rounding Related Functions. + (line 71) + * mpfr_rec_sqrt: Basic Arithmetic Functions. +- (line 103) ++ (line 105) + * mpfr_regular_p: Comparison Functions. + (line 43) + * mpfr_reldiff: Compatibility with MPF. +@@ -4021,11 +4039,11 @@ + * ‘mpfr_rnd_t’: Nomenclature and Types. + (line 34) + * mpfr_root: Basic Arithmetic Functions. +- (line 109) ++ (line 114) + * mpfr_round: Integer Related Functions. + (line 9) +-* mpfr_sec: Special Functions. (line 45) +-* mpfr_sech: Special Functions. (line 109) ++* mpfr_sec: Special Functions. (line 47) ++* mpfr_sech: Special Functions. (line 111) + * mpfr_set: Assignment Functions. + (line 9) + * mpfr_setsign: Miscellaneous Functions. +@@ -4100,57 +4118,57 @@ + (line 49) + * mpfr_signbit: Miscellaneous Functions. + (line 99) +-* mpfr_sin: Special Functions. (line 30) +-* mpfr_sinh: Special Functions. (line 96) +-* mpfr_sinh_cosh: Special Functions. (line 101) +-* mpfr_sin_cos: Special Functions. (line 35) ++* mpfr_sin: Special Functions. (line 32) ++* mpfr_sinh: Special Functions. (line 98) ++* mpfr_sinh_cosh: Special Functions. (line 103) ++* mpfr_sin_cos: Special Functions. (line 37) + * mpfr_si_div: Basic Arithmetic Functions. +- (line 78) ++ (line 80) + * mpfr_si_sub: Basic Arithmetic Functions. +- (line 31) ++ (line 32) + * mpfr_snprintf: Formatted Output Functions. + (line 180) + * mpfr_sprintf: Formatted Output Functions. + (line 170) + * mpfr_sqr: Basic Arithmetic Functions. +- (line 69) ++ (line 71) + * mpfr_sqrt: Basic Arithmetic Functions. +- (line 96) ++ (line 98) + * mpfr_sqrt_ui: Basic Arithmetic Functions. +- (line 97) ++ (line 99) + * mpfr_strtofr: Assignment Functions. + (line 80) + * mpfr_sub: Basic Arithmetic Functions. +- (line 25) ++ (line 26) + * mpfr_subnormalize: Exception Related Functions. + (line 60) + * mpfr_sub_d: Basic Arithmetic Functions. +- (line 37) ++ (line 38) + * mpfr_sub_q: Basic Arithmetic Functions. +- (line 43) ++ (line 44) + * mpfr_sub_si: Basic Arithmetic Functions. +- (line 33) ++ (line 34) + * mpfr_sub_ui: Basic Arithmetic Functions. +- (line 29) ++ (line 30) + * mpfr_sub_z: Basic Arithmetic Functions. +- (line 41) +-* mpfr_sum: Special Functions. (line 252) ++ (line 42) ++* mpfr_sum: Special Functions. (line 262) + * mpfr_swap: Assignment Functions. + (line 150) + * ‘mpfr_t’: Nomenclature and Types. + (line 6) +-* mpfr_tan: Special Functions. (line 31) +-* mpfr_tanh: Special Functions. (line 97) ++* mpfr_tan: Special Functions. (line 33) ++* mpfr_tanh: Special Functions. (line 99) + * mpfr_trunc: Integer Related Functions. + (line 10) + * mpfr_ui_div: Basic Arithmetic Functions. +- (line 74) ++ (line 76) + * mpfr_ui_pow: Basic Arithmetic Functions. +- (line 126) ++ (line 131) + * mpfr_ui_pow_ui: Basic Arithmetic Functions. +- (line 124) ++ (line 129) + * mpfr_ui_sub: Basic Arithmetic Functions. +- (line 27) ++ (line 28) + * mpfr_underflow_p: Exception Related Functions. + (line 132) + * mpfr_unordered_p: Comparison Functions. +@@ -4181,61 +4199,61 @@ + (line 182) + * mpfr_vsprintf: Formatted Output Functions. + (line 171) +-* mpfr_y0: Special Functions. (line 193) +-* mpfr_y1: Special Functions. (line 194) +-* mpfr_yn: Special Functions. (line 195) ++* mpfr_y0: Special Functions. (line 199) ++* mpfr_y1: Special Functions. (line 200) ++* mpfr_yn: Special Functions. (line 201) + * mpfr_zero_p: Comparison Functions. + (line 42) +-* mpfr_zeta: Special Functions. (line 171) +-* mpfr_zeta_ui: Special Functions. (line 172) ++* mpfr_zeta: Special Functions. (line 177) ++* mpfr_zeta_ui: Special Functions. (line 178) + * mpfr_z_sub: Basic Arithmetic Functions. +- (line 39) ++ (line 40) + + +  + Tag Table: + Node: Top775 + Node: Copying2007 +-Node: Introduction to MPFR3766 +-Node: Installing MPFR5880 +-Node: Reporting Bugs11323 +-Node: MPFR Basics13353 +-Node: Headers and Libraries13669 +-Node: Nomenclature and Types16828 +-Node: MPFR Variable Conventions18874 +-Node: Rounding Modes20418 +-Ref: ternary value21544 +-Node: Floating-Point Values on Special Numbers23526 +-Node: Exceptions26572 +-Node: Memory Handling29749 +-Node: MPFR Interface30894 +-Node: Initialization Functions33008 +-Node: Assignment Functions40318 +-Node: Combined Initialization and Assignment Functions49673 +-Node: Conversion Functions50974 +-Node: Basic Arithmetic Functions60035 +-Node: Comparison Functions69200 +-Node: Special Functions72687 +-Node: Input and Output Functions86672 +-Node: Formatted Output Functions88644 +-Node: Integer Related Functions98431 +-Node: Rounding Related Functions105051 +-Node: Miscellaneous Functions108888 +-Node: Exception Related Functions117568 +-Node: Compatibility with MPF124386 +-Node: Custom Interface127127 +-Node: Internals131526 +-Node: API Compatibility133066 +-Node: Type and Macro Changes134995 +-Node: Added Functions137844 +-Node: Changed Functions141132 +-Node: Removed Functions145545 +-Node: Other Changes145973 +-Node: Contributors147576 +-Node: References150219 +-Node: GNU Free Documentation License151973 +-Node: Concept Index174562 +-Node: Function and Type Index180659 ++Node: Introduction to MPFR3770 ++Node: Installing MPFR5884 ++Node: Reporting Bugs11327 ++Node: MPFR Basics13357 ++Node: Headers and Libraries13673 ++Node: Nomenclature and Types16832 ++Node: MPFR Variable Conventions18894 ++Node: Rounding Modes20438 ++Ref: ternary value21568 ++Node: Floating-Point Values on Special Numbers23554 ++Node: Exceptions26813 ++Node: Memory Handling29990 ++Node: MPFR Interface31135 ++Node: Initialization Functions33249 ++Node: Assignment Functions40559 ++Node: Combined Initialization and Assignment Functions49914 ++Node: Conversion Functions51215 ++Node: Basic Arithmetic Functions60276 ++Node: Comparison Functions69777 ++Node: Special Functions73264 ++Node: Input and Output Functions87862 ++Node: Formatted Output Functions89834 ++Node: Integer Related Functions99621 ++Node: Rounding Related Functions106241 ++Node: Miscellaneous Functions110078 ++Node: Exception Related Functions118758 ++Node: Compatibility with MPF125576 ++Node: Custom Interface128317 ++Node: Internals132716 ++Node: API Compatibility134260 ++Node: Type and Macro Changes136189 ++Node: Added Functions139038 ++Node: Changed Functions142326 ++Node: Removed Functions146739 ++Node: Other Changes147167 ++Node: Contributors148770 ++Node: References151413 ++Node: GNU Free Documentation License153167 ++Node: Concept Index175760 ++Node: Function and Type Index181857 +  + End Tag Table + +diff -Naurd mpfr-3.1.3-a/src/lngamma.c mpfr-3.1.3-b/src/lngamma.c +--- mpfr-3.1.3-a/src/lngamma.c 2015-06-19 19:55:10.000000000 +0000 ++++ mpfr-3.1.3-b/src/lngamma.c 2015-07-02 10:49:24.018113593 +0000 +@@ -603,16 +603,17 @@ + mpfr_get_prec (y), mpfr_log_prec, y, inex)); + + /* special cases */ +- if (MPFR_UNLIKELY (MPFR_IS_SINGULAR (x))) ++ if (MPFR_UNLIKELY (MPFR_IS_SINGULAR (x) || ++ (MPFR_IS_NEG (x) && mpfr_integer_p (x)))) + { +- if (MPFR_IS_NAN (x) || MPFR_IS_NEG (x)) ++ if (MPFR_IS_NAN (x)) + { + MPFR_SET_NAN (y); + MPFR_RET_NAN; + } +- else /* lngamma(+Inf) = lngamma(+0) = +Inf */ ++ else /* lngamma(+/-Inf) = lngamma(nonpositive integer) = +Inf */ + { +- if (MPFR_IS_ZERO (x)) ++ if (!MPFR_IS_INF (x)) + mpfr_set_divby0 (); + MPFR_SET_INF (y); + MPFR_SET_POS (y); +@@ -620,8 +621,8 @@ + } + } + +- /* if x < 0 and -2k-1 <= x <= -2k, then lngamma(x) = NaN */ +- if (MPFR_IS_NEG (x) && (unit_bit (x) == 0 || mpfr_integer_p (x))) ++ /* if -2k-1 < x < -2k <= 0, then lngamma(x) = NaN */ ++ if (MPFR_IS_NEG (x) && unit_bit (x) == 0) + { + MPFR_SET_NAN (y); + MPFR_RET_NAN; +diff -Naurd mpfr-3.1.3-a/src/mpfr.h mpfr-3.1.3-b/src/mpfr.h +--- mpfr-3.1.3-a/src/mpfr.h 2015-06-19 19:55:10.000000000 +0000 ++++ mpfr-3.1.3-b/src/mpfr.h 2015-07-02 10:49:24.038113803 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 3 +-#define MPFR_VERSION_STRING "3.1.3" ++#define MPFR_VERSION_STRING "3.1.3-p1" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.3-a/src/version.c mpfr-3.1.3-b/src/version.c +--- mpfr-3.1.3-a/src/version.c 2015-06-19 19:55:10.000000000 +0000 ++++ mpfr-3.1.3-b/src/version.c 2015-07-02 10:49:24.042113845 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.3"; ++ return "3.1.3-p1"; + } +diff -Naurd mpfr-3.1.3-a/tests/tlngamma.c mpfr-3.1.3-b/tests/tlngamma.c +--- mpfr-3.1.3-a/tests/tlngamma.c 2015-06-19 19:55:10.000000000 +0000 ++++ mpfr-3.1.3-b/tests/tlngamma.c 2015-07-02 10:49:24.018113593 +0000 +@@ -33,7 +33,7 @@ + special (void) + { + mpfr_t x, y; +- int inex; ++ int i, inex; + + mpfr_init (x); + mpfr_init (y); +@@ -46,25 +46,29 @@ + exit (1); + } + +- mpfr_set_inf (x, -1); ++ mpfr_set_inf (x, 1); ++ mpfr_clear_flags (); + mpfr_lngamma (y, x, MPFR_RNDN); +- if (!mpfr_nan_p (y)) ++ if (!mpfr_inf_p (y) || mpfr_sgn (y) < 0 || __gmpfr_flags != 0) + { +- printf ("Error for lngamma(-Inf)\n"); ++ printf ("Error for lngamma(+Inf)\n"); + exit (1); + } + +- mpfr_set_inf (x, 1); ++ mpfr_set_inf (x, -1); ++ mpfr_clear_flags (); + mpfr_lngamma (y, x, MPFR_RNDN); +- if (!mpfr_inf_p (y) || mpfr_sgn (y) < 0) ++ if (!mpfr_inf_p (y) || mpfr_sgn (y) < 0 || __gmpfr_flags != 0) + { +- printf ("Error for lngamma(+Inf)\n"); ++ printf ("Error for lngamma(-Inf)\n"); + exit (1); + } + + mpfr_set_ui (x, 0, MPFR_RNDN); ++ mpfr_clear_flags (); + mpfr_lngamma (y, x, MPFR_RNDN); +- if (!mpfr_inf_p (y) || mpfr_sgn (y) < 0) ++ if (!mpfr_inf_p (y) || mpfr_sgn (y) < 0 || ++ __gmpfr_flags != MPFR_FLAGS_DIVBY0) + { + printf ("Error for lngamma(+0)\n"); + exit (1); +@@ -72,32 +76,58 @@ + + mpfr_set_ui (x, 0, MPFR_RNDN); + mpfr_neg (x, x, MPFR_RNDN); ++ mpfr_clear_flags (); + mpfr_lngamma (y, x, MPFR_RNDN); +- if (!mpfr_nan_p (y)) ++ if (!mpfr_inf_p (y) || mpfr_sgn (y) < 0 || ++ __gmpfr_flags != MPFR_FLAGS_DIVBY0) + { + printf ("Error for lngamma(-0)\n"); + exit (1); + } + + mpfr_set_ui (x, 1, MPFR_RNDN); ++ mpfr_clear_flags (); + mpfr_lngamma (y, x, MPFR_RNDN); +- if (MPFR_IS_NAN (y) || mpfr_cmp_ui (y, 0) || MPFR_IS_NEG (y)) ++ if (mpfr_cmp_ui0 (y, 0) || MPFR_IS_NEG (y)) + { + printf ("Error for lngamma(1)\n"); + exit (1); + } + +- mpfr_set_si (x, -1, MPFR_RNDN); +- mpfr_lngamma (y, x, MPFR_RNDN); +- if (!mpfr_nan_p (y)) ++ for (i = 1; i <= 5; i++) + { +- printf ("Error for lngamma(-1)\n"); +- exit (1); ++ int c; ++ ++ mpfr_set_si (x, -i, MPFR_RNDN); ++ mpfr_clear_flags (); ++ mpfr_lngamma (y, x, MPFR_RNDN); ++ if (!mpfr_inf_p (y) || mpfr_sgn (y) < 0 || ++ __gmpfr_flags != MPFR_FLAGS_DIVBY0) ++ { ++ printf ("Error for lngamma(-%d)\n", i); ++ exit (1); ++ } ++ if (i & 1) ++ { ++ mpfr_nextabove (x); ++ c = '+'; ++ } ++ else ++ { ++ mpfr_nextbelow (x); ++ c = '-'; ++ } ++ mpfr_lngamma (y, x, MPFR_RNDN); ++ if (!mpfr_nan_p (y)) ++ { ++ printf ("Error for lngamma(-%d%cepsilon)\n", i, c); ++ exit (1); ++ } + } + + mpfr_set_ui (x, 2, MPFR_RNDN); + mpfr_lngamma (y, x, MPFR_RNDN); +- if (MPFR_IS_NAN (y) || mpfr_cmp_ui (y, 0) || MPFR_IS_NEG (y)) ++ if (mpfr_cmp_ui0 (y, 0) || MPFR_IS_NEG (y)) + { + printf ("Error for lngamma(2)\n"); + exit (1); +@@ -127,7 +157,7 @@ + mpfr_set_str (x, CHECK_X2, 10, MPFR_RNDN); + mpfr_lngamma (y, x, MPFR_RNDN); + mpfr_set_str (x, CHECK_Y2, 10, MPFR_RNDN); +- if (MPFR_IS_NAN (y) || mpfr_cmp (y, x)) ++ if (mpfr_cmp0 (y, x)) + { + printf ("mpfr_lngamma("CHECK_X2") is wrong:\n" + "expected "); +@@ -143,7 +173,7 @@ + mpfr_lngamma (y, x, MPFR_RNDU); + mpfr_set_prec (x, 175); + mpfr_set_str_binary (x, "0.1010001100011101101011001101110010100001000001000001110011000001101100001111001001000101011011100100010101011110100111110101010100010011010010000101010111001100011000101111E7"); +- if (MPFR_IS_NAN (y) || mpfr_cmp (x, y)) ++ if (mpfr_cmp0 (x, y)) + { + printf ("Error in mpfr_lngamma (1)\n"); + exit (1); +@@ -155,7 +185,7 @@ + mpfr_lngamma (x, y, MPFR_RNDZ); + mpfr_set_prec (y, 21); + mpfr_set_str_binary (y, "0.111000101000001100101E9"); +- if (MPFR_IS_NAN (x) || mpfr_cmp (x, y)) ++ if (mpfr_cmp0 (x, y)) + { + printf ("Error in mpfr_lngamma (120)\n"); + printf ("Expected "); mpfr_print_binary (y); puts (""); +@@ -169,7 +199,7 @@ + inex = mpfr_lngamma (y, x, MPFR_RNDN); + mpfr_set_prec (x, 206); + mpfr_set_str_binary (x, "0.10000111011000000011100010101001100110001110000111100011000100100110110010001011011110101001111011110110000001010100111011010000000011100110110101100111000111010011110010000100010111101010001101000110101001E13"); +- if (MPFR_IS_NAN (y) || mpfr_cmp (x, y)) ++ if (mpfr_cmp0 (x, y)) + { + printf ("Error in mpfr_lngamma (768)\n"); + exit (1); +@@ -185,7 +215,7 @@ + mpfr_set_str_binary (x, "0.1100E-66"); + mpfr_lngamma (y, x, MPFR_RNDN); + mpfr_set_str_binary (x, "0.1100E6"); +- if (MPFR_IS_NAN (y) || mpfr_cmp (x, y)) ++ if (mpfr_cmp0 (x, y)) + { + printf ("Error for lngamma(0.1100E-66)\n"); + exit (1); +@@ -199,7 +229,7 @@ + mpfr_lngamma (y, x, MPFR_RNDN); + mpfr_set_prec (x, 32); + mpfr_set_str_binary (x, "-0.10001000111011111011000010100010E207"); +- if (MPFR_IS_NAN (y) || mpfr_cmp (x, y)) ++ if (mpfr_cmp0 (x, y)) + { + printf ("Error for lngamma(-2^199+0.5)\n"); + printf ("Got "); +diff -Naurd mpfr-3.1.3-a/PATCHES mpfr-3.1.3-b/PATCHES +--- mpfr-3.1.3-a/PATCHES 2015-07-02 10:50:08.046573308 +0000 ++++ mpfr-3.1.3-b/PATCHES 2015-07-02 10:50:08.126574142 +0000 +@@ -0,0 +1 @@ ++muldiv-2exp-overflow +diff -Naurd mpfr-3.1.3-a/VERSION mpfr-3.1.3-b/VERSION +--- mpfr-3.1.3-a/VERSION 2015-07-02 10:49:24.042113845 +0000 ++++ mpfr-3.1.3-b/VERSION 2015-07-02 10:50:08.126574142 +0000 +@@ -1 +1 @@ +-3.1.3-p1 ++3.1.3-p2 +diff -Naurd mpfr-3.1.3-a/src/div_2si.c mpfr-3.1.3-b/src/div_2si.c +--- mpfr-3.1.3-a/src/div_2si.c 2015-06-19 19:55:10.000000000 +0000 ++++ mpfr-3.1.3-b/src/div_2si.c 2015-07-02 10:50:08.106573933 +0000 +@@ -49,7 +49,7 @@ + rnd_mode = MPFR_RNDZ; + return mpfr_underflow (y, rnd_mode, MPFR_SIGN(y)); + } +- else if (MPFR_UNLIKELY(n < 0 && (__gmpfr_emax < MPFR_EMIN_MIN - n || ++ else if (MPFR_UNLIKELY(n <= 0 && (__gmpfr_emax < MPFR_EMIN_MIN - n || + exp > __gmpfr_emax + n)) ) + return mpfr_overflow (y, rnd_mode, MPFR_SIGN(y)); + +diff -Naurd mpfr-3.1.3-a/src/div_2ui.c mpfr-3.1.3-b/src/div_2ui.c +--- mpfr-3.1.3-a/src/div_2ui.c 2015-06-19 19:55:10.000000000 +0000 ++++ mpfr-3.1.3-b/src/div_2ui.c 2015-07-02 10:50:08.106573933 +0000 +@@ -32,7 +32,7 @@ + rnd_mode), + ("y[%Pu]=%.*Rg inexact=%d", mpfr_get_prec(y), mpfr_log_prec, y, inexact)); + +- if (MPFR_UNLIKELY (MPFR_IS_SINGULAR (x))) ++ if (MPFR_UNLIKELY (n == 0 || MPFR_IS_SINGULAR (x))) + return mpfr_set (y, x, rnd_mode); + else + { +diff -Naurd mpfr-3.1.3-a/src/mpfr.h mpfr-3.1.3-b/src/mpfr.h +--- mpfr-3.1.3-a/src/mpfr.h 2015-07-02 10:49:24.038113803 +0000 ++++ mpfr-3.1.3-b/src/mpfr.h 2015-07-02 10:50:08.126574142 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 3 +-#define MPFR_VERSION_STRING "3.1.3-p1" ++#define MPFR_VERSION_STRING "3.1.3-p2" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.3-a/src/mul_2si.c mpfr-3.1.3-b/src/mul_2si.c +--- mpfr-3.1.3-a/src/mul_2si.c 2015-06-19 19:55:10.000000000 +0000 ++++ mpfr-3.1.3-b/src/mul_2si.c 2015-07-02 10:50:08.106573933 +0000 +@@ -39,7 +39,7 @@ + { + mpfr_exp_t exp = MPFR_GET_EXP (x); + MPFR_SETRAW (inexact, y, x, exp, rnd_mode); +- if (MPFR_UNLIKELY( n > 0 && (__gmpfr_emax < MPFR_EMIN_MIN + n || ++ if (MPFR_UNLIKELY(n >= 0 && (__gmpfr_emax < MPFR_EMIN_MIN + n || + exp > __gmpfr_emax - n))) + return mpfr_overflow (y, rnd_mode, MPFR_SIGN(y)); + else if (MPFR_UNLIKELY(n < 0 && (__gmpfr_emin > MPFR_EMAX_MAX + n || +diff -Naurd mpfr-3.1.3-a/src/version.c mpfr-3.1.3-b/src/version.c +--- mpfr-3.1.3-a/src/version.c 2015-07-02 10:49:24.042113845 +0000 ++++ mpfr-3.1.3-b/src/version.c 2015-07-02 10:50:08.126574142 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.3-p1"; ++ return "3.1.3-p2"; + } +diff -Naurd mpfr-3.1.3-a/tests/tmul_2exp.c mpfr-3.1.3-b/tests/tmul_2exp.c +--- mpfr-3.1.3-a/tests/tmul_2exp.c 2015-06-19 19:55:10.000000000 +0000 ++++ mpfr-3.1.3-b/tests/tmul_2exp.c 2015-07-02 10:50:08.106573933 +0000 +@@ -242,6 +242,76 @@ + large (MPFR_EMAX_MAX); + } + ++/* Cases where the function overflows on n = 0 when rounding is like ++ away from zero. */ ++static void ++overflow0 (mpfr_exp_t emax) ++{ ++ mpfr_exp_t old_emax; ++ mpfr_t x, y1, y2; ++ int neg, r, op; ++ static char *sop[4] = { "mul_2ui", "mul_2si", "div_2ui", "div_2si" }; ++ ++ old_emax = mpfr_get_emax (); ++ set_emax (emax); ++ ++ mpfr_init2 (x, 8); ++ mpfr_inits2 (6, y1, y2, (mpfr_ptr) 0); ++ ++ mpfr_set_inf (x, 1); ++ mpfr_nextbelow (x); ++ ++ for (neg = 0; neg <= 1; neg++) ++ { ++ RND_LOOP (r) ++ { ++ int inex1, inex2; ++ unsigned int flags1, flags2; ++ ++ /* Even if there isn't an overflow (rounding ~ toward zero), ++ the result is the same as the one of an overflow. */ ++ inex1 = mpfr_overflow (y1, (mpfr_rnd_t) r, neg ? -1 : 1); ++ flags1 = MPFR_FLAGS_INEXACT; ++ if (mpfr_inf_p (y1)) ++ flags1 |= MPFR_FLAGS_OVERFLOW; ++ for (op = 0; op < 4; op++) ++ { ++ mpfr_clear_flags (); ++ inex2 = ++ op == 0 ? mpfr_mul_2ui (y2, x, 0, (mpfr_rnd_t) r) : ++ op == 1 ? mpfr_mul_2si (y2, x, 0, (mpfr_rnd_t) r) : ++ op == 2 ? mpfr_div_2ui (y2, x, 0, (mpfr_rnd_t) r) : ++ op == 3 ? mpfr_div_2si (y2, x, 0, (mpfr_rnd_t) r) : ++ (MPFR_ASSERTN (0), 0); ++ flags2 = __gmpfr_flags; ++ if (!(mpfr_equal_p (y1, y2) && ++ SAME_SIGN (inex1, inex2) && ++ flags1 == flags2)) ++ { ++ printf ("Error in overflow0 for %s, mpfr_%s, emax = %" ++ MPFR_EXP_FSPEC "d,\nx = ", ++ mpfr_print_rnd_mode ((mpfr_rnd_t) r), sop[op], ++ (mpfr_eexp_t) emax); ++ mpfr_dump (x); ++ printf ("Expected "); ++ mpfr_dump (y1); ++ printf (" with inex = %d, flags =", inex1); ++ flags_out (flags1); ++ printf ("Got "); ++ mpfr_dump (y2); ++ printf (" with inex = %d, flags =", inex2); ++ flags_out (flags2); ++ exit (1); ++ } ++ } ++ } ++ mpfr_neg (x, x, MPFR_RNDN); ++ } ++ ++ mpfr_clears (x, y1, y2, (mpfr_ptr) 0); ++ set_emax (old_emax); ++} ++ + int + main (int argc, char *argv[]) + { +@@ -334,6 +404,11 @@ + underflow0 (); + large0 (); + ++ if (mpfr_get_emax () != MPFR_EMAX_MAX) ++ overflow0 (mpfr_get_emax ()); ++ overflow0 (MPFR_EMAX_MAX); ++ overflow0 (-1); ++ + tests_end_mpfr (); + return 0; + } +diff -Naurd mpfr-3.1.3-a/PATCHES mpfr-3.1.3-b/PATCHES +--- mpfr-3.1.3-a/PATCHES 2015-07-17 08:54:48.592799981 +0000 ++++ mpfr-3.1.3-b/PATCHES 2015-07-17 08:54:48.616811495 +0000 +@@ -0,0 +1 @@ ++muldiv-2exp-underflow +diff -Naurd mpfr-3.1.3-a/VERSION mpfr-3.1.3-b/VERSION +--- mpfr-3.1.3-a/VERSION 2015-07-02 10:50:08.126574142 +0000 ++++ mpfr-3.1.3-b/VERSION 2015-07-17 08:54:48.616811495 +0000 +@@ -1 +1 @@ +-3.1.3-p2 ++3.1.3-p3 +diff -Naurd mpfr-3.1.3-a/src/div_2si.c mpfr-3.1.3-b/src/div_2si.c +--- mpfr-3.1.3-a/src/div_2si.c 2015-07-02 10:50:08.106573933 +0000 ++++ mpfr-3.1.3-b/src/div_2si.c 2015-07-17 08:54:48.608807656 +0000 +@@ -45,7 +45,8 @@ + if (rnd_mode == MPFR_RNDN && + (__gmpfr_emin > MPFR_EMAX_MAX - (n - 1) || + exp < __gmpfr_emin + (n - 1) || +- (inexact >= 0 && mpfr_powerof2_raw (y)))) ++ ((MPFR_IS_NEG (y) ? inexact <= 0 : inexact >= 0) && ++ mpfr_powerof2_raw (y)))) + rnd_mode = MPFR_RNDZ; + return mpfr_underflow (y, rnd_mode, MPFR_SIGN(y)); + } +diff -Naurd mpfr-3.1.3-a/src/div_2ui.c mpfr-3.1.3-b/src/div_2ui.c +--- mpfr-3.1.3-a/src/div_2ui.c 2015-07-02 10:50:08.106573933 +0000 ++++ mpfr-3.1.3-b/src/div_2ui.c 2015-07-17 08:54:48.608807656 +0000 +@@ -44,7 +44,9 @@ + if (MPFR_UNLIKELY (n >= diffexp)) /* exp - n <= emin - 1 */ + { + if (rnd_mode == MPFR_RNDN && +- (n > diffexp || (inexact >= 0 && mpfr_powerof2_raw (y)))) ++ (n > diffexp || ++ ((MPFR_IS_NEG (y) ? inexact <= 0 : inexact >= 0) && ++ mpfr_powerof2_raw (y)))) + rnd_mode = MPFR_RNDZ; + return mpfr_underflow (y, rnd_mode, MPFR_SIGN (y)); + } +diff -Naurd mpfr-3.1.3-a/src/mpfr.h mpfr-3.1.3-b/src/mpfr.h +--- mpfr-3.1.3-a/src/mpfr.h 2015-07-02 10:50:08.126574142 +0000 ++++ mpfr-3.1.3-b/src/mpfr.h 2015-07-17 08:54:48.616811495 +0000 +@@ -27,7 +27,7 @@ + #define MPFR_VERSION_MAJOR 3 + #define MPFR_VERSION_MINOR 1 + #define MPFR_VERSION_PATCHLEVEL 3 +-#define MPFR_VERSION_STRING "3.1.3-p2" ++#define MPFR_VERSION_STRING "3.1.3-p3" + + /* Macros dealing with MPFR VERSION */ + #define MPFR_VERSION_NUM(a,b,c) (((a) << 16L) | ((b) << 8) | (c)) +diff -Naurd mpfr-3.1.3-a/src/mul_2si.c mpfr-3.1.3-b/src/mul_2si.c +--- mpfr-3.1.3-a/src/mul_2si.c 2015-07-02 10:50:08.106573933 +0000 ++++ mpfr-3.1.3-b/src/mul_2si.c 2015-07-17 08:54:48.608807656 +0000 +@@ -48,7 +48,8 @@ + if (rnd_mode == MPFR_RNDN && + (__gmpfr_emin > MPFR_EMAX_MAX + (n + 1) || + exp < __gmpfr_emin - (n + 1) || +- (inexact >= 0 && mpfr_powerof2_raw (y)))) ++ ((MPFR_IS_NEG (y) ? inexact <= 0 : inexact >= 0) && ++ mpfr_powerof2_raw (y)))) + rnd_mode = MPFR_RNDZ; + return mpfr_underflow (y, rnd_mode, MPFR_SIGN(y)); + } +diff -Naurd mpfr-3.1.3-a/src/version.c mpfr-3.1.3-b/src/version.c +--- mpfr-3.1.3-a/src/version.c 2015-07-02 10:50:08.126574142 +0000 ++++ mpfr-3.1.3-b/src/version.c 2015-07-17 08:54:48.616811495 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.3-p2"; ++ return "3.1.3-p3"; + } +diff -Naurd mpfr-3.1.3-a/tests/tmul_2exp.c mpfr-3.1.3-b/tests/tmul_2exp.c +--- mpfr-3.1.3-a/tests/tmul_2exp.c 2015-07-02 10:50:08.106573933 +0000 ++++ mpfr-3.1.3-b/tests/tmul_2exp.c 2015-07-17 08:54:48.608807656 +0000 +@@ -50,77 +50,82 @@ + { + mpfr_t x, y, z1, z2; + mpfr_exp_t emin; +- int i, k; ++ int i, k, s; + int prec; + int rnd; + int div; + int inex1, inex2; + unsigned int flags1, flags2; + +- /* Test mul_2si(x, e - k), div_2si(x, k - e) and div_2ui(x, k - e) +- * with emin = e, x = 1 + i/16, i in { -1, 0, 1 }, and k = 1 to 4, +- * by comparing the result with the one of a simple division. ++ /* Test mul_2si(x, e - k), div_2si(x, k - e) and div_2ui(x, k - e) with ++ * emin = e, x = s * (1 + i/16), i in { -1, 0, 1 }, s in { -1, 1 }, and ++ * k = 1 to 4, by comparing the result with the one of a simple division. + */ + emin = mpfr_get_emin (); + set_emin (e); + mpfr_inits2 (8, x, y, (mpfr_ptr) 0); + for (i = 15; i <= 17; i++) +- { +- inex1 = mpfr_set_ui_2exp (x, i, -4, MPFR_RNDN); +- MPFR_ASSERTN (inex1 == 0); +- for (prec = 6; prec >= 3; prec -= 3) +- { +- mpfr_inits2 (prec, z1, z2, (mpfr_ptr) 0); +- RND_LOOP (rnd) +- for (k = 1; k <= 4; k++) +- { +- /* The following one is assumed to be correct. */ +- inex1 = mpfr_mul_2si (y, x, e, MPFR_RNDN); +- MPFR_ASSERTN (inex1 == 0); +- inex1 = mpfr_set_ui (z1, 1 << k, MPFR_RNDN); +- MPFR_ASSERTN (inex1 == 0); +- mpfr_clear_flags (); +- /* Do not use mpfr_div_ui to avoid the optimization +- by mpfr_div_2si. */ +- inex1 = mpfr_div (z1, y, z1, (mpfr_rnd_t) rnd); +- flags1 = __gmpfr_flags; +- +- for (div = 0; div <= 2; div++) ++ for (s = 1; s >= -1; s -= 2) ++ { ++ inex1 = mpfr_set_si_2exp (x, s * i, -4, MPFR_RNDN); ++ MPFR_ASSERTN (inex1 == 0); ++ for (prec = 6; prec >= 3; prec -= 3) ++ { ++ mpfr_inits2 (prec, z1, z2, (mpfr_ptr) 0); ++ RND_LOOP (rnd) ++ for (k = 1; k <= 4; k++) + { ++ /* The following one is assumed to be correct. */ ++ inex1 = mpfr_mul_2si (y, x, e, MPFR_RNDN); ++ MPFR_ASSERTN (inex1 == 0); ++ inex1 = mpfr_set_ui (z1, 1 << k, MPFR_RNDN); ++ MPFR_ASSERTN (inex1 == 0); + mpfr_clear_flags (); +- inex2 = div == 0 ? +- mpfr_mul_2si (z2, x, e - k, (mpfr_rnd_t) rnd) : div == 1 ? +- mpfr_div_2si (z2, x, k - e, (mpfr_rnd_t) rnd) : +- mpfr_div_2ui (z2, x, k - e, (mpfr_rnd_t) rnd); +- flags2 = __gmpfr_flags; +- if (flags1 == flags2 && SAME_SIGN (inex1, inex2) && +- mpfr_equal_p (z1, z2)) +- continue; +- printf ("Error in underflow("); +- if (e == MPFR_EMIN_MIN) +- printf ("MPFR_EMIN_MIN"); +- else if (e == emin) +- printf ("default emin"); +- else if (e >= LONG_MIN) +- printf ("%ld", (long) e); +- else +- printf ("= LONG_MIN) ++ printf ("%ld", (long) e); ++ else ++ printf ("d1 or (np[n-1]=d1 and np[n-2]>=d0) here, ++ since we truncate the divisor at each step, but since {np,n} < D ++ originally, the largest possible partial quotient is B-1. */ ++ if (MPFR_UNLIKELY(np[n-1] > d1 || (np[n-1] == d1 && np[n-2] >= d0))) + q2 = ~ (mp_limb_t) 0; + else + udiv_qr_3by2 (q2, q1, q0, np[n - 1], np[n - 2], np[n - 3], +diff -Naurd mpfr-3.1.3-a/src/version.c mpfr-3.1.3-b/src/version.c +--- mpfr-3.1.3-a/src/version.c 2015-07-17 08:58:21.118986898 +0000 ++++ mpfr-3.1.3-b/src/version.c 2015-10-29 13:47:46.763900609 +0000 +@@ -25,5 +25,5 @@ + const char * + mpfr_get_version (void) + { +- return "3.1.3-p4"; ++ return "3.1.3-p5"; + } +diff -Naurd mpfr-3.1.3-a/tests/tdiv.c mpfr-3.1.3-b/tests/tdiv.c +--- mpfr-3.1.3-a/tests/tdiv.c 2015-06-19 19:55:10.000000000 +0000 ++++ mpfr-3.1.3-b/tests/tdiv.c 2015-10-29 13:47:46.751900855 +0000 +@@ -1099,6 +1099,69 @@ + mpfr_set_emax (old_emax); + } + ++/* Bug in mpfr_divhigh_n_basecase when all limbs of q (except the most ++ significant one) are B-1 where B=2^GMP_NUMB_BITS. Since we truncate ++ the divisor at each step, it might happen at some point that ++ (np[n-1],np[n-2]) > (d1,d0), and not only the equality. ++ Reported by Ricky Farr ++ ++ To get a failure, a MPFR_DIVHIGH_TAB entry below the MPFR_DIV_THRESHOLD ++ limit must have a value 0. With most mparam.h files, this cannot occur. */ ++static void ++test_20151023 (void) ++{ ++ mpfr_prec_t p; ++ mpfr_t n, d, q, q0; ++ int inex, i; ++ ++ for (p = GMP_NUMB_BITS; p <= 2000; p++) ++ { ++ mpfr_init2 (n, 2*p); ++ mpfr_init2 (d, p); ++ mpfr_init2 (q, p); ++ mpfr_init2 (q0, GMP_NUMB_BITS); ++ ++ /* generate a random divisor of p bits */ ++ mpfr_urandomb (d, RANDS); ++ /* generate a random quotient of GMP_NUMB_BITS bits */ ++ mpfr_urandomb (q0, RANDS); ++ /* zero-pad the quotient to p bits */ ++ inex = mpfr_prec_round (q0, p, MPFR_RNDN); ++ MPFR_ASSERTN(inex == 0); ++ ++ for (i = 0; i < 3; i++) ++ { ++ /* i=0: try with the original quotient xxx000...000 ++ i=1: try with the original quotient minus one ulp ++ i=2: try with the original quotient plus one ulp */ ++ if (i == 1) ++ mpfr_nextbelow (q0); ++ else if (i == 2) ++ { ++ mpfr_nextabove (q0); ++ mpfr_nextabove (q0); ++ } ++ ++ inex = mpfr_mul (n, d, q0, MPFR_RNDN); ++ MPFR_ASSERTN(inex == 0); ++ mpfr_nextabove (n); ++ mpfr_div (q, n, d, MPFR_RNDN); ++ MPFR_ASSERTN(mpfr_cmp (q, q0) == 0); ++ ++ inex = mpfr_mul (n, d, q0, MPFR_RNDN); ++ MPFR_ASSERTN(inex == 0); ++ mpfr_nextbelow (n); ++ mpfr_div (q, n, d, MPFR_RNDN); ++ MPFR_ASSERTN(mpfr_cmp (q, q0) == 0); ++ } ++ ++ mpfr_clear (n); ++ mpfr_clear (d); ++ mpfr_clear (q); ++ mpfr_clear (q0); ++ } ++} ++ + #define TEST_FUNCTION test_div + #define TWO_ARGS + #define RAND_FUNCTION(x) mpfr_random2(x, MPFR_LIMB_SIZE (x), randlimb () % 100, RANDS) +@@ -1219,6 +1282,7 @@ + consistency (); + test_20070603 (); + test_20070628 (); ++ test_20151023 (); + test_generic (2, 800, 50); + test_extreme (); + diff --git a/easybuild/easyconfigs/g/GCCcore/GCCcore-4.9.3.eb b/easybuild/easyconfigs/g/GCCcore/GCCcore-4.9.3.eb index 2027c9fa8e29ce268acc07fd59ca6ff725817905..268b0526876636af0c7f5e6de8a2e6e7aba2f7d7 100644 --- a/easybuild/easyconfigs/g/GCCcore/GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/g/GCCcore/GCCcore-4.9.3.eb @@ -13,7 +13,7 @@ mpfr_version = '3.1.2' gcc_name = 'GCC' source_urls = [ - 'http://ftpmirror.gnu.org/%s/%s-%s' % (gcc_name.lower(), gcc_name.lower(), version), # GCC auto-resolving HTTP mirror + 'http://ftpmirror.gnu.org/gcc/gcc-%s' % version, # GCC auto-resolving HTTP mirror 'http://ftpmirror.gnu.org/gmp', # idem for GMP 'http://ftpmirror.gnu.org/mpfr', # idem for MPFR 'http://www.multiprecision.org/mpc/download', # MPC official diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-1.10.1-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/g/GDAL/GDAL-1.10.1-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..63e63419b2c20eee5ec0c4d070d11687a29a1088 --- /dev/null +++ b/easybuild/easyconfigs/g/GDAL/GDAL-1.10.1-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,54 @@ +easyblock = 'ConfigureMake' + +name = 'GDAL' +version = '1.10.1' + +homepage = 'http://www.gdal.org/' +description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style + Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model + to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for + data translation and processing.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://download.osgeo.org/gdal/%(version)s/'] +sources = [SOURCELOWER_TAR_XZ] + +patches = ['GDAL-%(version)s-python.patch'] + +pyver = '2.7.10' +pyshortver = '.'.join(pyver.split('.')[0:2]) +versionsuffix = '-%s-%s' % ('Python', pyver) + +dependencies = [ + ('Python', pyver), + ('netCDF', '4.3.2'), + ('expat', '2.1.0'), + ('GEOS', '3.5.0', versionsuffix), + ('SQLite', '3.8.10.2'), + ('libxml2', '2.9.3', versionsuffix), + ('libpng', '1.6.18'), + ('libjpeg-turbo', '1.4.2'), + ('JasPer', '1.900.1'), + ('LibTIFF', '4.0.3'), + ('zlib', '1.2.8'), + ('cURL', '7.43.0'), + ('PCRE', '8.37'), +] + +configopts = '--with-expat=$EBROOTEXPAT --with-libz=$EBROOTLIBZ --with-hdf5=$EBROOTHDF5 --with-netcdf=$EBROOTNETCDF' +configopts += ' --with-xml2=$EBROOTLIBXML2 --with-geos=$EBROOTGEOS/bin/geos-config --with-jpeg=$EBROOTLIBJPEGTURBO' +configopts += ' --with-png=$EBROOTLIBPNG --with-sqlite3=$EBROOTSQLITE --with-jasper=$EBROOTJASPER' +configopts += ' --with-libtiff=$EBROOTLIBTIFF --with-pcre=$EBROOTPCRE --with-python=$EBROOTPYTHON/bin/python' +# there is a bug in the build system causing the build with libtool to fail for the moment +# (static library is also missing because of this) +configopts += ' --without-libtool' + +modextrapaths = {'PYTHONPATH': 'lib/python%s/site-packages' % pyshortver} + +sanity_check_paths = { + 'files': ['lib/libgdal.%s' % SHLIB_EXT], + 'dirs': ['bin', 'include'] +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-1.10.1-python.patch b/easybuild/easyconfigs/g/GDAL/GDAL-1.10.1-python.patch new file mode 100644 index 0000000000000000000000000000000000000000..12ad48ccf8ea18f21bfece2375350fa7cec40c13 --- /dev/null +++ b/easybuild/easyconfigs/g/GDAL/GDAL-1.10.1-python.patch @@ -0,0 +1,21 @@ +# Fix installing python bindings +# By Ward Poelmans +diff -ur gdal-1.10.1.orig/swig/python/GNUmakefile gdal-1.10.1/swig/python/GNUmakefile +--- gdal-1.10.1.orig/swig/python/GNUmakefile 2013-08-26 22:01:11.000000000 +0200 ++++ gdal-1.10.1/swig/python/GNUmakefile 2016-01-07 17:58:10.743255676 +0100 +@@ -66,13 +66,8 @@ + $(PYTHON) setup.py bdist_egg + + install: +- +-ifeq ($(PY_HAVE_SETUPTOOLS),1) +- $(PYTHON) setup.py install +-else +- $(PYTHON) setup.py install --prefix=$(DESTDIR)$(prefix) +-endif +- ++ mkdir -p $(DESTDIR)$(prefix)/lib/python2.7/site-packages ++ PYTHONPATH=$(DESTDIR)$(prefix)/lib/python2.7/site-packages:$(PYTHONPATH) $(PYTHON) setup.py install --prefix=$(DESTDIR)$(prefix) + for f in $(SCRIPTS) ; do $(INSTALL) ./scripts/$$f $(DESTDIR)$(INST_BIN) ; done + + docs: diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.4.10.eb index 884cb408425bf49fe5c7c8d440d62f6c0c8470d7..fa9ab627f319a82a84567d9a2d7959cbc498ff1a 100644 --- a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.4.10.eb @@ -17,7 +17,7 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': ['lib/libgdal.so', 'lib/libgdal.a'], + 'files': ['lib/libgdal.%s' % SHLIB_EXT, 'lib/libgdal.a'], 'dirs': ['bin', 'include'] } diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.5.16.eb b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.5.16.eb index 14deb76474f7f4e209b96a6d497fcc77ce38bd62..9be42926e7dc1842014d228a49179cc155526c20 100644 --- a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.5.16.eb +++ b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-goolf-1.5.16.eb @@ -17,7 +17,7 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': ['lib/libgdal.so', 'lib/libgdal.a'], + 'files': ['lib/libgdal.%s' % SHLIB_EXT, 'lib/libgdal.a'], 'dirs': ['bin', 'include'] } diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-4.1.13.eb b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-4.1.13.eb index 9a0c3842fb8e3f8ef551049c9a646162a117c72a..4eded30be6a354fb363274503f54d0935efb3c6f 100644 --- a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-4.1.13.eb @@ -8,7 +8,7 @@ description = """GDAL is a translator library for raster geospatial data formats Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.""" - + toolchain = {'name': 'ictce', 'version': '4.1.13'} source_urls = ['http://download.osgeo.org/gdal/'] @@ -17,7 +17,7 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': ['lib/libgdal.so', 'lib/libgdal.a'], + 'files': ['lib/libgdal.%s' % SHLIB_EXT, 'lib/libgdal.a'], 'dirs': ['bin', 'include'] } diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-5.3.0.eb index eb57686131989ab9d73621a9eae8ee2383c568bb..024ded503c23ec894777a014614e5de817c5c915 100644 --- a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-ictce-5.3.0.eb @@ -17,7 +17,7 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': ['lib/libgdal.so', 'lib/libgdal.a'], + 'files': ['lib/libgdal.%s' % SHLIB_EXT, 'lib/libgdal.a'], 'dirs': ['bin', 'include'] } diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-iqacml-3.7.3.eb b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-iqacml-3.7.3.eb index b400835265a463b58ba54ad949ebbfe69f022ca7..670cd7dbd40f4247735b9fea28eef15d0a08ecec 100644 --- a/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/g/GDAL/GDAL-1.9.2-iqacml-3.7.3.eb @@ -8,7 +8,7 @@ description = """GDAL is a translator library for raster geospatial data formats Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.""" - + toolchain = {'name': 'iqacml', 'version': '3.7.3'} source_urls = ['http://download.osgeo.org/gdal/'] @@ -17,7 +17,7 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': ['lib/libgdal.so', 'lib/libgdal.a'], + 'files': ['lib/libgdal.%s' % SHLIB_EXT, 'lib/libgdal.a'], 'dirs': ['bin', 'include'] } diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-2.0.0-intel-2015a.eb b/easybuild/easyconfigs/g/GDAL/GDAL-2.0.0-intel-2015a.eb index 2d5340eabaedeaf53f325b16a380f994d3602f8d..dbff74b11052503b3126500f96decf78fd010076 100644 --- a/easybuild/easyconfigs/g/GDAL/GDAL-2.0.0-intel-2015a.eb +++ b/easybuild/easyconfigs/g/GDAL/GDAL-2.0.0-intel-2015a.eb @@ -22,7 +22,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libgdal.so', 'lib/libgdal.a'], + 'files': ['lib/libgdal.%s' % SHLIB_EXT, 'lib/libgdal.a'], 'dirs': ['bin', 'include'] } diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-2.0.1-foss-2015b.eb b/easybuild/easyconfigs/g/GDAL/GDAL-2.0.1-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..304e10cc995704146f2b4221e2637acef3fca39d --- /dev/null +++ b/easybuild/easyconfigs/g/GDAL/GDAL-2.0.1-foss-2015b.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'GDAL' +version = '2.0.1' + +homepage = 'http://www.gdal.org/' +description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style + Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model + to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for + data translation and processing.""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'usempi': True} + +source_urls = ['http://download.osgeo.org/gdal/%(version)s/'] +sources = [SOURCELOWER_TAR_XZ] + +dependencies = [ + ('netCDF', '4.3.3.1'), + ('expat', '2.1.0'), + ('libxml2', '2.9.2'), + ('zlib', '1.2.8'), +] + +sanity_check_paths = { + 'files': ['lib/libgdal.%s' % SHLIB_EXT, 'lib/libgdal.a'], + 'dirs': ['bin', 'include'] +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/g/GDAL/GDAL-2.0.2-intel-2016a.eb b/easybuild/easyconfigs/g/GDAL/GDAL-2.0.2-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..203a2ae45413612353482252862916cf6a01f571 --- /dev/null +++ b/easybuild/easyconfigs/g/GDAL/GDAL-2.0.2-intel-2016a.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'GDAL' +version = '2.0.2' + +homepage = 'http://www.gdal.org/' +description = """GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style + Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model + to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for + data translation and processing.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['http://download.osgeo.org/gdal/%(version)s/'] +sources = [SOURCELOWER_TAR_XZ] + +dependencies = [ + ('netCDF', '4.3.3.1'), + ('expat', '2.1.0'), + ('libxml2', '2.9.3'), + ('zlib', '1.2.8'), +] + +sanity_check_paths = { + 'files': ['lib/libgdal.%s' % SHLIB_EXT, 'lib/libgdal.a'], + 'dirs': ['bin', 'include'] +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/g/GDB/GDB-7.10.1-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/g/GDB/GDB-7.10.1-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..88be8d913f1effbde3afe4ca0bc2ba88d0f7a8b3 --- /dev/null +++ b/easybuild/easyconfigs/g/GDB/GDB-7.10.1-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'GDB' +version = '7.10.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.gnu.org/software/gdb/gdb.html' +description = "The GNU Project Debugger" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCELOWER_TAR_XZ] +source_urls = [GNU_SOURCE] + +patches = ['GDB-7.9-missing-makeinfo.patch'] + +dependencies = [ + ('ncurses', '6.0'), + ('Python', '2.7.11'), +] + +configopts = '--with-python' + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/gdb', 'bin/gdbserver'], + 'dirs': [], +} + +moduleclass = 'debugger' diff --git a/easybuild/easyconfigs/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb b/easybuild/easyconfigs/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb index 03a5996b54f0972943b6df495a498601c76c9195..009df93cd714adaefba937bf406efc33c949d30e 100644 --- a/easybuild/easyconfigs/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb +++ b/easybuild/easyconfigs/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb @@ -18,7 +18,7 @@ description = """ Next-generation sequencing platforms (Illumina/Solexa, ABI/SOL transform (BWT) have been implemented. The library core is written in C for maximum speed, with concise interfaces to higher-level programming languages like OCaml and Python. Many high-performance standalone programs (mapper, splice mapper, etc.) are provided along - with the library; in general, new algorithms and tools can be easily implemented on the top of it. """ + with the library; in general, new algorithms and tools can be easily implemented on the top of it. """ toolchain = {'name': 'dummy', 'version': 'dummy'} @@ -28,14 +28,14 @@ sources = ['GEM-binaries-Linux-x86_64-core_i3-20130406-045632.tbz2'] # if core_i3 version doesn't work for you, try core_2 version below #sources = ['GEM-binaries-Linux-x86_64-core_2-20130406-045632.tbz2'] -# only Linux_x86-64 binaries are provided so we skip build_step. +# only Linux_x86-64 binaries are provided so we skip build_step. # We just use the MakeCp block to copy each file to the right destination folder (mainly the man files) skipsteps = ['build'] # glob support in MakeCp easyblock is required so EasyBuild-1.12 or higher is required easybuild_version = '1.12.0' -files_to_copy = [ (["man/*"], 'man/man1/'), "bin" ] +files_to_copy = [(["man/*"], 'man/man1/'), "bin"] sanity_check_paths = { 'files': ["bin/gem-indexer", "bin/gem-mapper", "bin/gem-rna-mapper"], diff --git a/easybuild/easyconfigs/g/GEMSTAT/GEMSTAT-1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GEMSTAT/GEMSTAT-1.0-goolf-1.4.10.eb index c3c35140d3581af65608af7a257085e67fe3e73d..71eda7f1813fbc887abbff743b60b17eeb207b69 100644 --- a/easybuild/easyconfigs/g/GEMSTAT/GEMSTAT-1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GEMSTAT/GEMSTAT-1.0-goolf-1.4.10.eb @@ -30,7 +30,7 @@ buildopts = ' GSL_DIR=$EBROOTGSL' files_to_copy = [ (["seq2expr"], 'bin'), - "README.txt", "data" + "README.txt", "data" ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goalf-1.1.0-no-OFED.eb index ab3440a25ce5c9fc7337215b10ac65c93724bfda..03606c24ee97e2195748a41c035f4483b99831f9 100644 --- a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goalf-1.1.0-no-OFED.eb @@ -6,9 +6,14 @@ version = '3.3.5' homepage = 'http://trac.osgeo.org/geos' description = """GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)""" -source_urls = [ 'http://download.osgeo.org/geos/' ] +source_urls = ['http://download.osgeo.org/geos/'] sources = [SOURCELOWER_TAR_BZ2] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} +sanity_check_paths = { + 'files': ['bin/geos-config', 'lib/libgeos.so', 'lib/libgeos.a', 'include/geos.h'], + 'dirs': [] +} + moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goolf-1.4.10.eb index 28fdadb86f21637bbbe376228ca4f8a70e2b5d0a..dc750d2020372da9bd539ceeebe4de6e5ac552f8 100644 --- a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-goolf-1.4.10.eb @@ -6,8 +6,14 @@ version = '3.3.5' homepage = 'http://trac.osgeo.org/geos' description = """GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)""" -source_urls = [ 'http://download.osgeo.org/geos/' ] -sources = [SOURCELOWER_TAR_BZ2] toolchain = {'name': 'goolf', 'version': '1.4.10'} +source_urls = ['http://download.osgeo.org/geos/'] +sources = [SOURCELOWER_TAR_BZ2] + +sanity_check_paths = { + 'files': ['bin/geos-config', 'lib/libgeos.so', 'lib/libgeos.a', 'include/geos.h'], + 'dirs': [] +} + moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-4.0.6.eb b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-4.0.6.eb index 0b85c86242d1769fca509d44146abdb85d23485e..0a0116a3b7f272bf47042da685ccff4dce332248 100644 --- a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-4.0.6.eb @@ -6,9 +6,14 @@ version = '3.3.5' homepage = 'http://trac.osgeo.org/geos' description = """GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)""" -source_urls = [ 'http://download.osgeo.org/geos/' ] +toolchain = {'name': 'ictce', 'version': '4.0.6'} + +source_urls = ['http://download.osgeo.org/geos/'] sources = [SOURCELOWER_TAR_BZ2] -toolchain = {'name': 'ictce', 'version': '4.0.6'} +sanity_check_paths = { + 'files': ['bin/geos-config', 'lib/libgeos.so', 'lib/libgeos.a', 'include/geos.h'], + 'dirs': [] +} moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-5.3.0.eb index 27b9e83b617856549292b1b8581e5f4adbf09d52..7d45ab8ba7223dfc7589e364bae1f0c2a78cd7bf 100644 --- a/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GEOS/GEOS-3.3.5-ictce-5.3.0.eb @@ -6,10 +6,14 @@ version = '3.3.5' homepage = 'http://trac.osgeo.org/geos' description = """GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)""" -source_urls = [ 'http://download.osgeo.org/geos/' ] -sources = [SOURCELOWER_TAR_BZ2] +toolchain = {'name': 'ictce', 'version': '5.3.0'} +source_urls = ['http://download.osgeo.org/geos/'] +sources = [SOURCELOWER_TAR_BZ2] -toolchain = {'name': 'ictce', 'version': '5.3.0'} +sanity_check_paths = { + 'files': ['bin/geos-config', 'lib/libgeos.so', 'lib/libgeos.a', 'include/geos.h'], + 'dirs': [] +} moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GEOS/GEOS-3.5.0-foss-2015a-Python-2.7.11.eb b/easybuild/easyconfigs/g/GEOS/GEOS-3.5.0-foss-2015a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..3053b75ee06b7b746731a5b69a05cc53285ae92a --- /dev/null +++ b/easybuild/easyconfigs/g/GEOS/GEOS-3.5.0-foss-2015a-Python-2.7.11.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'GEOS' +version = '3.5.0' + +homepage = 'http://trac.osgeo.org/geos' +description = """GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['http://download.osgeo.org/geos/'] +sources = [SOURCELOWER_TAR_BZ2] + +pyver = '2.7.11' +pyshortver = '.'.join(pyver.split('.')[0:2]) +versionsuffix = '-Python-%s' % pyver + +dependencies = [('Python', pyver)] + +builddependencies = [('SWIG', '3.0.8', versionsuffix)] + +configopts = '--enable-python' + +modextrapaths = {'PYTHONPATH': 'lib/python%s/site-packages' % pyshortver} + +sanity_check_paths = { + 'files': ['bin/geos-config', 'lib/libgeos.%s' % SHLIB_EXT, 'lib/libgeos.a', 'include/geos.h'], + 'dirs': ['lib/python%s/site-packages/geos' % pyshortver] +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GEOS/GEOS-3.5.0-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/g/GEOS/GEOS-3.5.0-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..35073f5ad2c8303f9e5772f7c642bf4e3437eba5 --- /dev/null +++ b/easybuild/easyconfigs/g/GEOS/GEOS-3.5.0-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'GEOS' +version = '3.5.0' + +homepage = 'http://trac.osgeo.org/geos' +description = """GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://download.osgeo.org/geos/'] +sources = [SOURCELOWER_TAR_BZ2] + +pyver = '2.7.10' +pyshortver = '.'.join(pyver.split('.')[0:2]) +versionsuffix = '-Python-%s' % pyver + +dependencies = [('Python', pyver)] + +builddependencies = [('SWIG', '3.0.7', versionsuffix)] + +configopts = '--enable-python' + +modextrapaths = {'PYTHONPATH': 'lib/python%s/site-packages' % pyshortver} + +sanity_check_paths = { + 'files': ['bin/geos-config', 'lib/libgeos.%s' % SHLIB_EXT, 'lib/libgeos.a', 'include/geos.h'], + 'dirs': ['lib/python%s/site-packages/geos' % pyshortver] +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GHC/GHC-6.12.3.eb b/easybuild/easyconfigs/g/GHC/GHC-6.12.3.eb index 0b40688cd7909cc720a4e86283de82528f8bbfec..125cb4abdd7b44137f03e796b9b89cf13ca6b228 100644 --- a/easybuild/easyconfigs/g/GHC/GHC-6.12.3.eb +++ b/easybuild/easyconfigs/g/GHC/GHC-6.12.3.eb @@ -6,7 +6,7 @@ description = """The Glorious/Glasgow Haskell Compiler""" toolchain = {'name': 'dummy', 'version': 'dummy'} -sources = ['%s-%s-x86_64-unknown-linux-n.tar.bz2' % (name.lower(), version)] -source_urls = ['http://www.haskell.org/ghc/dist/%s/' % version] +sources = ['%(namelower)s-%(version)s-x86_64-unknown-linux-n.tar.bz2'] +source_urls = ['http://www.haskell.org/ghc/dist/%(version)s/'] moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/g/GHC/GHC-7.4.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GHC/GHC-7.4.2-goalf-1.1.0-no-OFED.eb index fbac11c814ed268e4fbf2e9c1bc1728146b77d93..08afbb7d98533e570628731b2b53ef07c4558f73 100644 --- a/easybuild/easyconfigs/g/GHC/GHC-7.4.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GHC/GHC-7.4.2-goalf-1.1.0-no-OFED.eb @@ -7,8 +7,8 @@ description = """The Glorious/Glasgow Haskell Compiler""" toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'pic': True} -sources = ['%s-%s-src.tar.bz2' % (name.lower(), version)] -source_urls = ['http://www.haskell.org/ghc/dist/%s/' % version] +sources = ['%(namelower)s-%(version)s-src.tar.bz2'] +source_urls = ['http://www.haskell.org/ghc/dist/%(version)s/'] dependencies = [ ('GMP', '5.0.5'), diff --git a/easybuild/easyconfigs/g/GHC/GHC-7.4.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GHC/GHC-7.4.2-goolf-1.4.10.eb index 76088a4fcb2f60d50fe9505fc4873ab613f4d265..2f7b37d7ff4a34c1042f7de98c320069f31f4aa6 100644 --- a/easybuild/easyconfigs/g/GHC/GHC-7.4.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GHC/GHC-7.4.2-goolf-1.4.10.eb @@ -6,8 +6,8 @@ description = """The Glorious/Glasgow Haskell Compiler""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'pic': True} -sources = ['%s-%s-src.tar.bz2' % (name.lower(), version)] -source_urls = ['http://www.haskell.org/ghc/dist/%s/' % version] +sources = ['%(namelower)s-%(version)s-src.tar.bz2'] +source_urls = ['http://www.haskell.org/ghc/dist/%(version)s/'] dependencies = [ ('GMP', '5.0.5'), diff --git a/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goalf-1.1.0-no-OFED.eb index 9a068844e14e2036d49aff7435213dee6a6d44bd..898e8c42ae5f8660a7c6d5feb779c2c14d8c6dfc 100644 --- a/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goalf-1.1.0-no-OFED.eb @@ -6,8 +6,8 @@ description = """GHC is the Glasgow Haskell Compiler.""" toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} -sources = ['%s-%s-src.tar.bz2' % (name.lower(), version)] -source_urls = ['http://www.haskell.org/ghc/dist/%s/' % version] +sources = ['%(namelower)s-%(version)s-src.tar.bz2'] +source_urls = ['http://www.haskell.org/ghc/dist/%(version)s/'] dependencies = [ ('GMP', '5.0.5'), diff --git a/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goolf-1.4.10.eb index 36f3fcc67a3b3e96cc1a17aa4882aa8c57029de5..60a039090d69f7b12d7ecb139686927f2a768dcf 100644 --- a/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GHC/GHC-7.6.2-goolf-1.4.10.eb @@ -5,8 +5,8 @@ homepage = 'http://www.haskell.org/ghc' description = """GHC is the Glasgow Haskell Compiler.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} -sources = ['%s-%s-src.tar.bz2' % (name.lower(), version)] -source_urls = ['http://www.haskell.org/ghc/dist/%s/' % version] +sources = ['%(namelower)s-%(version)s-src.tar.bz2'] +source_urls = ['http://www.haskell.org/ghc/dist/%(version)s/'] dependencies = [ ('GMP', '5.0.5'), diff --git a/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goalf-1.1.0-no-OFED.eb index 8fecfa9a315f18c3f6eae1a266aa476ab7b67636..2a900a50286a0d6f8b489787b5bb52ff31de5555 100644 --- a/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goalf-1.1.0-no-OFED.eb @@ -5,8 +5,8 @@ homepage = 'http://www.haskell.org/ghc' description = """GHC is the Glasgow Haskell Compiler.""" toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} -sources = ['%s-%s-src.tar.bz2' % (name.lower(), version)] -source_urls = ['http://www.haskell.org/ghc/dist/%s/' % version] +sources = ['%(namelower)s-%(version)s-src.tar.bz2'] +source_urls = ['http://www.haskell.org/ghc/dist/%(version)s/'] dependencies = [ ('GMP', '5.0.5'), diff --git a/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goolf-1.4.10.eb index ea5b087cdd48c2bf563eceb383606454e09ee947..1a594faa37aedaf7e4f069e47653934cda62a683 100644 --- a/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GHC/GHC-7.8.3-goolf-1.4.10.eb @@ -5,8 +5,8 @@ homepage = 'http://www.haskell.org/ghc' description = """GHC is the Glasgow Haskell Compiler.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} -sources = ['%s-%s-src.tar.bz2' % (name.lower(), version)] -source_urls = ['http://www.haskell.org/ghc/dist/%s/' % version] +sources = ['%(namelower)s-%(version)s-src.tar.bz2'] +source_urls = ['http://www.haskell.org/ghc/dist/%(version)s/'] dependencies = [ ('GMP', '5.0.5'), diff --git a/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-goolf-1.4.10.eb index 5079733d9193d893f3f46c7abbba36523960d250..8ad521809b871d0804a7307f3c3a5046962699fd 100644 --- a/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-goolf-1.4.10.eb @@ -6,7 +6,7 @@ # License:: MIT/GPL # ## -easyblock='MakeCp' +easyblock = 'MakeCp' name = "GLIMMER" version = "3.02b" diff --git a/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-ictce-5.3.0.eb index 7722b501dd6818c69637546daf49b50bf248410f..e4aa1f5c2e294bbdbabfebdc4a4f594a7d4248e3 100644 --- a/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GLIMMER/GLIMMER-3.02b-ictce-5.3.0.eb @@ -6,7 +6,7 @@ # License:: MIT/GPL # ## -easyblock='MakeCp' +easyblock = 'MakeCp' name = "GLIMMER" version = "3.02b" diff --git a/easybuild/easyconfigs/g/GLM/GLM-0.9.7.2-intel-2015b.eb b/easybuild/easyconfigs/g/GLM/GLM-0.9.7.2-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..1d08ddaee6cbc00ab60d9396a005b5e7c103ed17 --- /dev/null +++ b/easybuild/easyconfigs/g/GLM/GLM-0.9.7.2-intel-2015b.eb @@ -0,0 +1,22 @@ +easyblock = 'CMakeMake' + +name = 'GLM' +version = '0.9.7.2' + +homepage = 'https://github.com/g-truc/glm' +description = """OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on + the OpenGL Shading Language (GLSL) specifications.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['https://github.com/g-truc/glm/archive/'] +sources = ['%(version)s.tar.gz'] + +builddependencies = [('CMake', '3.4.1')] + +sanity_check_paths = { + 'files': [], + 'dirs': ['include/glm/'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.2.0.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.2.0.eb index afaaab1f33d255c4452951bd7a44ef7179ddc31d..42150fd75f0dbfedcd690e71a2d897fdb2aa331d 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.2.0.eb @@ -10,7 +10,7 @@ written in ANSI C and organized in the form of a callable library.""" toolchain = {'name': 'ictce', 'version': '5.2.0'} toolchainopts = {'opt': True, 'optarch': True, 'pic': True} - + sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.3.0.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.3.0.eb index 4716a30ce5587a8a8cac05b8d8644e72519bfcb1..c0b7a972313254d66bd85670cf82be743f8ef994 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.48-ictce-5.3.0.eb @@ -10,7 +10,7 @@ written in ANSI C and organized in the form of a callable library.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True, 'optarch': True, 'pic': True} - + sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://ftpmirror.gnu.org/%(namelower)s'] diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.53-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.53-goolf-1.4.10.eb index 9aae296531466e7d3d137618534241d1dbdd11e0..4525095b9713d7977c1de7b43048305b85c3e7da 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.53-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.53-goolf-1.4.10.eb @@ -9,7 +9,7 @@ programming (LP), mixed integer programming (MIP), and other related problems. I written in ANSI C and organized in the form of a callable library.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} - + sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://ftpmirror.gnu.org/%(namelower)s'] diff --git a/easybuild/easyconfigs/g/GLPK/GLPK-4.53-ictce-6.2.5.eb b/easybuild/easyconfigs/g/GLPK/GLPK-4.53-ictce-6.2.5.eb index b55056667c6ae4bd4d5933ee55f8606b4126cacb..aabef669ba99bc23084ad1d9cde7223e5c8fb4e3 100644 --- a/easybuild/easyconfigs/g/GLPK/GLPK-4.53-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/g/GLPK/GLPK-4.53-ictce-6.2.5.eb @@ -10,7 +10,7 @@ written in ANSI C and organized in the form of a callable library.""" toolchain = {'name': 'ictce', 'version': '6.2.5'} toolchainopts = {'opt': True, 'optarch': True, 'pic': True} - + sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://ftpmirror.gnu.org/%(namelower)s'] diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.41.2-intel-2014b.eb b/easybuild/easyconfigs/g/GLib/GLib-2.41.2-intel-2014b.eb index 207b74b508693927fe7713ecb120fc278e71c848..e534334b71bd0e438dd2bfe77280870481bc078c 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.41.2-intel-2014b.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.41.2-intel-2014b.eb @@ -5,7 +5,8 @@ version = '2.41.2' homepage = 'http://www.gtk.org/' description = """GLib is one of the base libraries of the GTK+ project""" -toolchain = {'name': 'intel', 'version': '2014b'} # tweaked by EasyBuild (was: {'name': 'foss', 'version': '2014b'}) + +toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'optarch': True, 'pic': True} source_urls = ['http://ftp.gnome.org/pub/gnome/sources/glib/%(version_major_minor)s/'] diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.44.1-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/g/GLib/GLib-2.44.1-intel-2015a-Python-2.7.10.eb index cf36332497a828de4fc6b1e2d9935753148eee67..9f4e52261e8e0a1a79eb532dd2f344a1c326204b 100644 --- a/easybuild/easyconfigs/g/GLib/GLib-2.44.1-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/g/GLib/GLib-2.44.1-intel-2015a-Python-2.7.10.eb @@ -16,9 +16,9 @@ dependencies = [ ('libffi', '3.1'), ('gettext', '0.19.2'), ] -python= 'Python' +python = 'Python' pyver = '2.7.10' -versionsuffix = '-%s-%s' % (python, pyver) +versionsuffix = '-%s-%s' % (python, pyver) builddependencies = [(python, pyver)] moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GLib/GLib-2.47.5-intel-2016a.eb b/easybuild/easyconfigs/g/GLib/GLib-2.47.5-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..3dcfe3ad198e2c99348c2dda70f7c265156fab72 --- /dev/null +++ b/easybuild/easyconfigs/g/GLib/GLib-2.47.5-intel-2016a.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'GLib' +version = '2.47.5' + +homepage = 'http://www.gtk.org/' +description = """GLib is one of the base libraries of the GTK+ project""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] + +pyver = '2.7.11' +pyshortver = '.'.join(pyver.split('.')[:2]) +pysuffix = '-Python-%s' % pyver + +dependencies = [ + ('libffi', '3.2.1'), + ('gettext', '0.19.6'), + ('libxml2', '2.9.3', pysuffix), + ('PCRE', '8.38'), +] + +builddependencies = [('Python', pyver)] + +configopts = "--disable-maintainer-mode --disable-silent-rules --disable-libelf --enable-static --enable-shared" + +postinstallcmds = ["sed -i -e 's|#!.*python|#!/usr/bin/env python|' %(installdir)s/bin/*"] + +sanity_check_paths = { + 'files': ['lib/libglib-%(version_major)s.0.a', 'lib/libglib-%%(version_major)s.0.%s' % SHLIB_EXT], + 'dirs': ['bin', 'include'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GLibmm/GLibmm-2.41.2-intel-2015a.eb b/easybuild/easyconfigs/g/GLibmm/GLibmm-2.41.2-intel-2015a.eb index 64f2f5e526f1d6b96f01b69ba58e6ba82068fda4..e53ca6dc7d891705a07642ba248c1e3b991b7141 100644 --- a/easybuild/easyconfigs/g/GLibmm/GLibmm-2.41.2-intel-2015a.eb +++ b/easybuild/easyconfigs/g/GLibmm/GLibmm-2.41.2-intel-2015a.eb @@ -18,7 +18,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libglibmm-2.4.so'], - 'dirs': [], + 'files': ['lib/libglibmm-2.4.%s' % SHLIB_EXT], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GLibmm/GLibmm-2.41.2-intel-2015b.eb b/easybuild/easyconfigs/g/GLibmm/GLibmm-2.41.2-intel-2015b.eb index 25c577786dfaa134a7ba8759553ad414e4313368..0ce479aba52d37953c18a5687a03392e1078fba7 100644 --- a/easybuild/easyconfigs/g/GLibmm/GLibmm-2.41.2-intel-2015b.eb +++ b/easybuild/easyconfigs/g/GLibmm/GLibmm-2.41.2-intel-2015b.eb @@ -18,7 +18,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libglibmm-2.4.so'], - 'dirs': [], + 'files': ['lib/libglibmm-2.4.%s' % SHLIB_EXT], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb index 3ce82b5b2d73e74bcb56b64a8d7c82ee97c01cf8..5fbe4acc9a092714ef3853f276b5670b3f05ad5e 100644 --- a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb @@ -3,7 +3,7 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -easyblock = 'ConfigureMake' +easyblock = 'ConfigureMake' name = 'GMAP-GSNAP' version = '2014-01-21' diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb index 746e7c4f5339888f5130e7cbddf9115aa615b3c1..6189b95fa0b2c47ae7ef7d7e9d4bdc46675567f0 100644 --- a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb @@ -3,7 +3,7 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -easyblock = 'ConfigureMake' +easyblock = 'ConfigureMake' name = 'GMAP-GSNAP' version = "2014-06-10" @@ -35,4 +35,3 @@ sanity_check_paths = { } moduleclass = 'bio' - diff --git a/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2015-12-31.v2-foss-2015b.eb b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2015-12-31.v2-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..db19b2803a4505002dcf44d44ea5804488b30923 --- /dev/null +++ b/easybuild/easyconfigs/g/GMAP-GSNAP/GMAP-GSNAP-2015-12-31.v2-foss-2015b.eb @@ -0,0 +1,37 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'GMAP-GSNAP' +version = "2015-12-31.v2" + +homepage = 'http://research-pub.gene.com/gmap/' +description = """GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences + GSNAP: Genomic Short-read Nucleotide Alignment Program""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = ['http://research-pub.gene.com/gmap/src/'] +sources = [SOURCELOWER_TAR_GZ] + +# with these deps you can use standard compressed files +# to support files in gobby format take a look at README for extra dependencies +# http://research-pub.gene.com/gmap/src/README +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), +] + +# you can change the MAX_READLENGTH for GSNAP with something like this. +# details in the README http://research-pub.gene.com/gmap/src/README +#configopts = 'MAX_READLENGTH=250' + +sanity_check_paths = { + 'files': ['bin/gmap', 'bin/gsnap'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.0.0-GCC-4.9.2.eb b/easybuild/easyconfigs/g/GMP/GMP-6.0.0-GCC-4.9.2.eb index df7b8848c54759d2f84ee93450f9b1ed83b073ef..ebcf35412899168ccdfb8bd31902f3146eab9155 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-6.0.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-6.0.0-GCC-4.9.2.eb @@ -12,13 +12,17 @@ toolchain = {'name': 'GCC', 'version': '4.9.2'} sources = ["%(namelower)s-%(version)s.tar.bz2"] source_urls = [GNU_SOURCE] +builddependencies = [ + ('Autotools', '20150215'), +] + # enable C++ interface configopts = '--enable-cxx' runtest = 'check' sanity_check_paths = { - 'files': ['lib/libgmp.so', 'include/gmp.h'], + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GCC-4.7.2.eb b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GCC-4.7.2.eb index fde2319360acbc8cb3e0b47db2c6b18858ce1cca..f6165358fa14040548f3ceff2586102e76e747aa 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GCC-4.7.2.eb @@ -12,13 +12,17 @@ toolchain = {'name': 'GCC', 'version': '4.7.2'} sources = ["%(namelower)s-%(version)s.tar.bz2"] source_urls = [GNU_SOURCE] +builddependencies = [ + ('Autotools', '20150215'), +] + # enable C++ interface configopts = '--enable-cxx' runtest = 'check' sanity_check_paths = { - 'files': ['lib/libgmp.so', 'include/gmp.h'], + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GCC-4.8.4.eb b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GCC-4.8.4.eb index 86bd52156f44a483f2db27807efc868f0c26cac9..0ea694664ddb077cfa32a7da7fbeea0ac2c59a74 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GCC-4.8.4.eb @@ -12,13 +12,17 @@ toolchain = {'name': 'GCC', 'version': '4.8.4'} sources = ["%(namelower)s-%(version)s.tar.bz2"] source_urls = [GNU_SOURCE] +builddependencies = [ + ('Autotools', '20150215'), +] + # enable C++ interface configopts = '--enable-cxx' runtest = 'check' sanity_check_paths = { - 'files': ['lib/libgmp.so', 'include/gmp.h'], + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GCC-4.9.2.eb b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GCC-4.9.2.eb index a9855e2029c8283bf69deaf48eb65661e7483035..d4d4addc7ca6d06201a2b915f9375959cbe3cf34 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GCC-4.9.2.eb @@ -12,13 +12,17 @@ toolchain = {'name': 'GCC', 'version': '4.9.2'} sources = ["%(namelower)s-%(version)s.tar.bz2"] source_urls = [GNU_SOURCE] +builddependencies = [ + ('Autotools', '20150215'), +] + # enable C++ interface configopts = '--enable-cxx' runtest = 'check' sanity_check_paths = { - 'files': ['lib/libgmp.so', 'include/gmp.h'], + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GNU-4.9.3-2.25.eb index 692f1fd8423e7fce9476386330bfb812114abb68..3328cb48836065fa1ff322366184557b1161449c 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-GNU-4.9.3-2.25.eb @@ -12,13 +12,17 @@ toolchain = {'name': 'GNU', 'version': '4.9.3-2.25'} sources = ["%(namelower)s-%(version)s.tar.bz2"] source_urls = [GNU_SOURCE] +builddependencies = [ + ('Autotools', '20150215'), +] + # enable C++ interface configopts = '--enable-cxx' runtest = 'check' sanity_check_paths = { - 'files': ['lib/libgmp.so', 'include/gmp.h'], + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-foss-2015a.eb b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-foss-2015a.eb index 2b5b650040ceb85228fbea32feda6e1f636d0ace..70ef38387dbb8b041f68fed0bca219e46de45f17 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-foss-2015a.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-foss-2015a.eb @@ -12,6 +12,10 @@ toolchain = {'name': 'foss', 'version': '2015a'} sources = [SOURCELOWER_TAR_BZ2] source_urls = ['http://ftp.gnu.org/gnu/gmp'] +builddependencies = [ + ('Autotools', '20150215'), +] + # enable C++ interface configopts = '--enable-cxx' diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-foss-2015b.eb b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..ab0d6b9ba8c8c678ef864cb1f99547ef59265dc1 --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-foss-2015b.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '6.0.0a' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'pic': True, 'precise': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [GNU_SOURCE] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' + diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-intel-2015b.eb b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-intel-2015b.eb index 9195f21b779954d2597e3ff9d732ee6e48cb201d..c2785aa4a79de12fb0c2cee1ee7f0326751b1ddf 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-intel-2015b.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-6.0.0a-intel-2015b.eb @@ -13,6 +13,10 @@ toolchainopts = {'pic': True, 'precise': True} sources = [SOURCELOWER_TAR_BZ2] source_urls = [GNU_SOURCE] +builddependencies = [ + ('Autotools', '20150215'), +] + # enable C++ interface configopts = '--enable-cxx' @@ -24,4 +28,3 @@ sanity_check_paths = { } moduleclass = 'math' - diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.1.0-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/g/GMP/GMP-6.1.0-GCC-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..3a35abe64e279b8016564fdc2975f9eef373833d --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-6.1.0-GCC-4.9.3-2.25.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '6.1.0' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} +toolchainopts = {'pic': True, 'precise': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/gmp'] + +builddependencies = [ + ('Autotools', '20150215'), +] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.1.0-foss-2015a.eb b/easybuild/easyconfigs/g/GMP/GMP-6.1.0-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..e5c8c08ed9cddb4ca1261af305720bf8964c4c92 --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-6.1.0-foss-2015a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '6.1.0' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True, 'precise': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/gmp'] + +builddependencies = [ + ('Autotools', '20150215'), +] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.1.0-foss-2016a.eb b/easybuild/easyconfigs/g/GMP/GMP-6.1.0-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..5a43c93bf337b9bfea24c2eaee61d077b07f7407 --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-6.1.0-foss-2016a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '6.1.0' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'foss', 'version': '2016a'} +toolchainopts = {'pic': True, 'precise': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/gmp'] + +builddependencies = [ + ('Autotools', '20150215'), +] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.1.0-intel-2015b.eb b/easybuild/easyconfigs/g/GMP/GMP-6.1.0-intel-2015b.eb index 04e471f0d69e5271943caf040952df3e347aec19..531c5382b9357f6104413150d35a6a0ee2d418e7 100644 --- a/easybuild/easyconfigs/g/GMP/GMP-6.1.0-intel-2015b.eb +++ b/easybuild/easyconfigs/g/GMP/GMP-6.1.0-intel-2015b.eb @@ -13,6 +13,10 @@ toolchainopts = {'pic': True, 'precise': True} sources = [SOURCELOWER_TAR_BZ2] source_urls = ['http://ftp.gnu.org/gnu/gmp'] +builddependencies = [ + ('Autotools', '20150215'), +] + # enable C++ interface configopts = '--enable-cxx' diff --git a/easybuild/easyconfigs/g/GMP/GMP-6.1.0-intel-2016a.eb b/easybuild/easyconfigs/g/GMP/GMP-6.1.0-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..c0c58b69fb51050995d6d66f564ba580673ea0c7 --- /dev/null +++ b/easybuild/easyconfigs/g/GMP/GMP-6.1.0-intel-2016a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'GMP' +version = '6.1.0' + +homepage = 'http://gmplib.org/' +description = """GMP is a free library for arbitrary precision arithmetic, +operating on signed integers, rational numbers, and floating point numbers. """ + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'pic': True, 'precise': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://ftp.gnu.org/gnu/gmp'] + +builddependencies = [ + ('Autotools', '20150215'), +] + +# enable C++ interface +configopts = '--enable-cxx' + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libgmp.%s' % SHLIB_EXT, 'include/gmp.h'], + 'dirs': [], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.47.1-intel-2016a.eb b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.47.1-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..eaa343080de350899c80dbdc9c5bf1f93099cb2f --- /dev/null +++ b/easybuild/easyconfigs/g/GObject-Introspection/GObject-Introspection-1.47.1-intel-2016a.eb @@ -0,0 +1,47 @@ +easyblock = 'ConfigureMake' + +name = 'GObject-Introspection' +version = '1.47.1' + +homepage = 'https://wiki.gnome.org/GObjectIntrospection/' +description = """GObject introspection is a middleware layer between C libraries + (using GObject) and language bindings. The C library can be scanned at + compile time and generate a metadata file, in addition to the actual + native C library. Then at runtime, language bindings can read this + metadata and automatically provide bindings to call into the C library.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] + +pyver = '2.7.11' + +dependencies = [ + ('Python', pyver), + ('GLib', '2.47.5'), + ('flex', '2.6.0'), + ('Bison', '3.0.4'), + ('cairo', '1.14.6'), + ('libffi', '3.2.1'), +] + +builddependencies = [('Autotools', '20150215')] + +preconfigopts = "GI_SCANNER_DISABLE_CACHE=true " + +# avoid using hard-coded path to 'python' in shebang of scripts +buildopts = "PYTHON=python" + +modextrapaths = { + 'GI_TYPELIB_PATH': 'share', + 'XDG_DATA_DIRS': 'share', +} + +sanity_check_paths = { + 'files': ['bin/g-ir-%s' % x for x in ['annotation-tool', 'compiler', 'generate', 'scanner']] + + ['lib/libgirepository-1.0.%s' % x for x in ['so', 'a']], + 'dirs': ['include', 'share'] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/GPAW/GPAW-0.9.0.8965-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/g/GPAW/GPAW-0.9.0.8965-goalf-1.1.0-no-OFED-Python-2.7.3.eb index ed849d076b66b4a1d9975575d5bce7bbf3c9894a..4eac8c213dfe82cdbcc742567f7ddb8d6cde4180 100644 --- a/easybuild/easyconfigs/g/GPAW/GPAW-0.9.0.8965-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/g/GPAW/GPAW-0.9.0.8965-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -21,13 +21,13 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % (python, pythonver) dependencies = [ - (python, pythonver), - ('ASE', '3.6.0.2515', versionsuffix) - ] + (python, pythonver), + ('ASE', '3.6.0.2515', versionsuffix) +] sanity_check_paths = { - 'files': ['bin/gpaw%s' % x for x in ['', '-basis', '-mpisim', '-python', '-setup', '-test']], - 'dirs': ['lib/python%s/site-packages/%s' % (pythonshortver, name.lower())] - } + 'files': ['bin/gpaw%s' % x for x in ['', '-basis', '-mpisim', '-python', '-setup', '-test']], + 'dirs': ['lib/python%s/site-packages/%s' % (pythonshortver, name.lower())] +} moduleclass = 'chem' diff --git a/easybuild/easyconfigs/g/GPAW/GPAW-0.9.0.8965-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/g/GPAW/GPAW-0.9.0.8965-goolf-1.4.10-Python-2.7.3.eb index b74ab76176f7dcdfddbb10df35ed61df38cf9627..c7f645394505054486f5d32c468f788eb3d991b4 100644 --- a/easybuild/easyconfigs/g/GPAW/GPAW-0.9.0.8965-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/g/GPAW/GPAW-0.9.0.8965-goolf-1.4.10-Python-2.7.3.eb @@ -20,13 +20,13 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % (python, pythonver) dependencies = [ - (python, pythonver), - ('ASE', '3.6.0.2515', versionsuffix) - ] + (python, pythonver), + ('ASE', '3.6.0.2515', versionsuffix) +] sanity_check_paths = { - 'files': ['bin/gpaw%s' % x for x in ['', '-basis', '-mpisim', '-python', '-setup', '-test']], - 'dirs': ['lib/python%s/site-packages/%s' % (pythonshortver, name.lower())] - } + 'files': ['bin/gpaw%s' % x for x in ['', '-basis', '-mpisim', '-python', '-setup', '-test']], + 'dirs': ['lib/python%s/site-packages/%s' % (pythonshortver, name.lower())] +} moduleclass = 'chem' diff --git a/easybuild/easyconfigs/g/GPAW/GPAW-0.9.0.8965-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/g/GPAW/GPAW-0.9.0.8965-ictce-4.0.6-Python-2.7.3.eb index b784121754ac8ffe1b2fb0907af6e0a3d628654d..d4915b51fb13b834d93ae1ba4df856a39af72caa 100644 --- a/easybuild/easyconfigs/g/GPAW/GPAW-0.9.0.8965-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/g/GPAW/GPAW-0.9.0.8965-ictce-4.0.6-Python-2.7.3.eb @@ -7,7 +7,7 @@ homepage = 'https://wiki.fysik.dtu.dk/gpaw/' description = """GPAW is a density-functional theory (DFT) Python code based on the projector-augmented wave (PAW) method and the atomic simulation environment (ASE). It uses real-space uniform grids and multigrid methods or atom-centered basis-functions.""" - + toolchain = {'name': 'ictce', 'version': '4.0.6'} source_urls = ['https://wiki.fysik.dtu.dk/gpaw-files/'] @@ -21,13 +21,13 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % (python, pythonver) dependencies = [ - (python, pythonver), - ('ASE', '3.6.0.2515', versionsuffix) - ] + (python, pythonver), + ('ASE', '3.6.0.2515', versionsuffix) +] sanity_check_paths = { - 'files': ['bin/gpaw%s' % x for x in ['', '-basis', '-mpisim', '-python', '-setup', '-test']], - 'dirs': ['lib/python%s/site-packages/%s' % (pythonshortver, name.lower())] - } + 'files': ['bin/gpaw%s' % x for x in ['', '-basis', '-mpisim', '-python', '-setup', '-test']], + 'dirs': ['lib/python%s/site-packages/%s' % (pythonshortver, name.lower())] +} moduleclass = 'chem' diff --git a/easybuild/easyconfigs/g/GPAW/GPAW-0.9.0.8965-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/g/GPAW/GPAW-0.9.0.8965-ictce-5.3.0-Python-2.7.3.eb index ed0f7d5368b8fb3311b0b15e78eae147e9279127..5403b3585f8ca8b0a81ecad23f65f855dc427155 100644 --- a/easybuild/easyconfigs/g/GPAW/GPAW-0.9.0.8965-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/g/GPAW/GPAW-0.9.0.8965-ictce-5.3.0-Python-2.7.3.eb @@ -22,13 +22,13 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % (python, pythonver) dependencies = [ - (python, pythonver), - ('ASE', '3.6.0.2515', versionsuffix) - ] + (python, pythonver), + ('ASE', '3.6.0.2515', versionsuffix) +] sanity_check_paths = { - 'files': ['bin/gpaw%s' % x for x in ['', '-basis', '-mpisim', '-python', '-setup', '-test']], - 'dirs': ['lib/python%s/site-packages/%s' % (pythonshortver, name.lower())] - } + 'files': ['bin/gpaw%s' % x for x in ['', '-basis', '-mpisim', '-python', '-setup', '-test']], + 'dirs': ['lib/python%s/site-packages/%s' % (pythonshortver, name.lower())] +} moduleclass = 'chem' diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.40-mpi.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.06-XC-mpi.eb similarity index 80% rename from easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.40-mpi.eb rename to easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.06-XC-mpi.eb index 239ea564c88a384d882352de22a415a280772b31..eb693a5ca3329e8ad9285c1d5d47d2ee259d3010 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.40-mpi.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.06-XC-mpi.eb @@ -18,7 +18,7 @@ homepage = 'http://www.gromacs.org' description = """GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} toolchainopts = {'usempi': True} # eg. ftp://ftp.gromacs.org/pub/gromacs/gromacs-4.6.tar.gz @@ -31,6 +31,13 @@ sources = [ 'regressiontests-%(version)s.tar.gz', ] +preconfigopts = "export CMAKE_LIBRARY_PATH=$CMAKE_LIBRARY_PATH:${EBROOTFFTW}/lib && " +preconfigopts += "export CMAKE_INCLUDE_PATH=$CMAKE_INCLUDE_PATH:${EBROOTFFTW}/include && " + +dependencies = [ + ('fftw/3.3.4.3', EXTERNAL_MODULE), +] + builddependencies = [('CMake', '3.2.2')] runtest = False diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.25-mpi.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.11-XC-mpi.eb similarity index 80% rename from easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.25-mpi.eb rename to easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.11-XC-mpi.eb index 4a945e2af83e2f8fca76dfada72081751d67909e..7d022ac778da22d274698a051f8f1ee6b38500c7 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.2.25-mpi.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-2015.11-XC-mpi.eb @@ -18,7 +18,7 @@ homepage = 'http://www.gromacs.org' description = """GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} toolchainopts = {'usempi': True} # eg. ftp://ftp.gromacs.org/pub/gromacs/gromacs-4.6.tar.gz @@ -31,6 +31,13 @@ sources = [ 'regressiontests-%(version)s.tar.gz', ] +preconfigopts = "export CMAKE_LIBRARY_PATH=$CMAKE_LIBRARY_PATH:$EBROOTFFTW/lib && " +preconfigopts += "export CMAKE_INCLUDE_PATH=$CMAKE_INCLUDE_PATH:$EBROOTFFTW/include && " + +dependencies = [ + ('fftw/3.3.4.5', EXTERNAL_MODULE), +] + builddependencies = [('CMake', '3.2.2')] runtest = False diff --git a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2015b-hybrid.eb similarity index 63% rename from easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb rename to easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2015b-hybrid.eb index 1aa3886405f2410110cdf16a1ea1a4366d0f842a..db2a991381fc6d468619fca85d1b1bde8e38eb35 100644 --- a/easybuild/easyconfigs/g/GROMACS/GROMACS-4.6.7-CrayGNU-5.1.29-mpi.eb +++ b/easybuild/easyconfigs/g/GROMACS/GROMACS-5.1.2-foss-2015b-hybrid.eb @@ -9,30 +9,31 @@ # # This work implements a part of the HPCBIOS project and is a component of the policy: # http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-93.html +# +# Version 5.1.2 +# Author: Adam Huffman +# The Francis Crick Institute ## + name = 'GROMACS' -version = '4.6.7' -versionsuffix = '-mpi' +version = '5.1.2' +versionsuffix = '-hybrid' homepage = 'http://www.gromacs.org' description = """GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.""" -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} -toolchainopts = {'usempi': True} +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'openmp': True, 'usempi': True} -# eg. ftp://ftp.gromacs.org/pub/gromacs/gromacs-4.6.tar.gz -source_urls = [ - 'ftp://ftp.gromacs.org/pub/gromacs/', # GROMACS sources - 'http://gerrit.gromacs.org/download/', # regression tests sources -] -sources = [ - SOURCELOWER_TAR_GZ, - 'regressiontests-%(version)s.tar.gz', -] +source_urls = ['ftp://ftp.gromacs.org/pub/gromacs/'] +sources = [SOURCELOWER_TAR_GZ] -builddependencies = [('CMake', '3.2.2')] +builddependencies = [ + ('CMake', '3.4.1'), + ('libxml2', '2.9.2') +] -runtest = False +dependencies = [('Boost', '1.60.0')] moduleclass = 'bio' diff --git a/easybuild/easyconfigs/g/GSL/GSL-1.16-foss-2015b.eb b/easybuild/easyconfigs/g/GSL/GSL-1.16-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..ed67148304a69a9965928bf6217ad27a0305af06 --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-1.16-foss-2015b.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '1.16' + +homepage = 'http://www.gnu.org/software/gsl/' +description = """The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. + The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/GSL/GSL-2.1-intel-2016a.eb b/easybuild/easyconfigs/g/GSL/GSL-2.1-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..418483081374507a1cf8132a955b69e1eaa8ce1a --- /dev/null +++ b/easybuild/easyconfigs/g/GSL/GSL-2.1-intel-2016a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'GSL' +version = '2.1' + +homepage = 'http://www.gnu.org/software/gsl/' +description = """The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. + The library provides a wide range of mathematical routines such as random number generators, + special functions and least-squares fitting.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'opt': True, 'optarch': True, 'unroll': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/g/GTI/GTI-1.2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/g/GTI/GTI-1.2.0-gompi-1.4.12-no-OFED.eb index f600de3146a58590972a84f949824d13bb4d1a70..3d384db2d68111b215a92d8166ab627f7834f4b7 100644 --- a/easybuild/easyconfigs/g/GTI/GTI-1.2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/g/GTI/GTI-1.2.0-gompi-1.4.12-no-OFED.eb @@ -27,7 +27,7 @@ dependencies = [('PnMPI', '1.2.0')] builddependencies = [('CMake', '2.8.10.2')] -configopts = '-DCMAKE_BUILD_TYPE=Release -DPnMPI_INSTALL_PREFIX=${EBROOTPNMPI}' +configopts = '-DCMAKE_BUILD_TYPE=Release -DPnMPI_INSTALL_PREFIX=${EBROOTPNMPI}' buildopts = 'CXXFLAGS="$CXXFLAGS -fpermissive"' sanity_check_paths = { diff --git a/easybuild/easyconfigs/g/gtk+/gtk+-2.24.28-intel-2015a.eb b/easybuild/easyconfigs/g/GTK+/GTK+-2.24.28-intel-2015a.eb similarity index 91% rename from easybuild/easyconfigs/g/gtk+/gtk+-2.24.28-intel-2015a.eb rename to easybuild/easyconfigs/g/GTK+/GTK+-2.24.28-intel-2015a.eb index 289385029dcddb633dbe20464e5a546e496c3e09..2b49aad4acbf0b76bc2d27b871b4e30cc5b80cfb 100644 --- a/easybuild/easyconfigs/g/gtk+/gtk+-2.24.28-intel-2015a.eb +++ b/easybuild/easyconfigs/g/GTK+/GTK+-2.24.28-intel-2015a.eb @@ -1,6 +1,6 @@ easyblock = 'ConfigureMake' -name = 'gtk+' +name = 'GTK+' version = '2.24.28' homepage = 'https://developer.gnome.org/gtk+/stable/' @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_XZ] dependencies = [ ('ATK', '2.16.0'), - ('gdk-pixbuf', '2.31.4'), + ('Gdk-Pixbuf', '2.31.4'), ('Pango', '1.37.1'), ] diff --git a/easybuild/easyconfigs/g/gtk+/gtk+-2.24.28-intel-2015b.eb b/easybuild/easyconfigs/g/GTK+/GTK+-2.24.28-intel-2015b.eb similarity index 91% rename from easybuild/easyconfigs/g/gtk+/gtk+-2.24.28-intel-2015b.eb rename to easybuild/easyconfigs/g/GTK+/GTK+-2.24.28-intel-2015b.eb index 9fe946073fe0a4f67cfedef2afefa3ce8967955a..65211f662c2491afd63c5d43a9fdb912e9fd1a72 100644 --- a/easybuild/easyconfigs/g/gtk+/gtk+-2.24.28-intel-2015b.eb +++ b/easybuild/easyconfigs/g/GTK+/GTK+-2.24.28-intel-2015b.eb @@ -1,6 +1,6 @@ easyblock = 'ConfigureMake' -name = 'gtk+' +name = 'GTK+' version = '2.24.28' homepage = 'https://developer.gnome.org/gtk+/stable/' @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_XZ] dependencies = [ ('ATK', '2.16.0'), - ('gdk-pixbuf', '2.31.4'), + ('Gdk-Pixbuf', '2.31.4'), ('Pango', '1.37.1'), ] diff --git a/easybuild/easyconfigs/g/GTK+/GTK+-2.24.28-intel-2016a.eb b/easybuild/easyconfigs/g/GTK+/GTK+-2.24.28-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..c29db47cc8e8e9dc19dca13f589b6131cc87b5d2 --- /dev/null +++ b/easybuild/easyconfigs/g/GTK+/GTK+-2.24.28-intel-2016a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'GTK+' +version = '2.24.28' + +homepage = 'https://developer.gnome.org/gtk+/stable/' +description = """ + The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications. +""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] + +dependencies = [ + ('ATK', '2.18.0'), + ('Gdk-Pixbuf', '2.32.3'), + ('Pango', '1.39.0'), + ('GObject-Introspection', '1.47.1'), +] + +configopts = "--disable-silent-rules --disable-glibtest --enable-introspection=yes --disable-visibility " + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2014b.eb b/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2014b.eb index b673ea80e1810e3aec5ba5901f961dc5edfe5afe..5c0a28293c30f3339b1ee4540d004baca4185018 100644 --- a/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2014b.eb +++ b/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2014b.eb @@ -14,11 +14,11 @@ source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] dependencies = [ - ('GLib', '2.40.0'), + ('GLib', '2.40.0'), ] sanity_check_paths = { - 'files': ['lib/libgts.so', 'bin/gts2oogl', 'bin/gtscheck'], + 'files': ['lib/libgts.%s' % SHLIB_EXT, 'bin/gts2oogl', 'bin/gtscheck'], 'dirs': [] } diff --git a/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2015a-GLib-2.44.1.eb b/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2015a-GLib-2.44.1.eb index 959c6d7b2b0fb2f636d5b2d9bb8e232962424da7..4aff5dab8ab4697ccc91f3661718f226c7c08328 100644 --- a/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2015a-GLib-2.44.1.eb +++ b/easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2015a-GLib-2.44.1.eb @@ -18,11 +18,11 @@ glibver = '2.44.1' versionsuffix = '-%s-%s' % (glib, glibver) dependencies = [ - (glib, glibver), + (glib, glibver), ] sanity_check_paths = { - 'files': ['lib/libgts.so', 'bin/gts2oogl', 'bin/gtscheck'], + 'files': ['lib/libgts.%s' % SHLIB_EXT, 'bin/gts2oogl', 'bin/gtscheck'], 'dirs': [] } diff --git a/easybuild/easyconfigs/g/gdk-pixbuf/gdk-pixbuf-2.31.4-intel-2015a.eb b/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.31.4-intel-2015a.eb similarity index 97% rename from easybuild/easyconfigs/g/gdk-pixbuf/gdk-pixbuf-2.31.4-intel-2015a.eb rename to easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.31.4-intel-2015a.eb index 5cb8ff5f1fc6ff2e43b97646fe1d47dd3c04bdf0..3eef94efe957a6795f96f1bd35b5f1751d20e1f2 100644 --- a/easybuild/easyconfigs/g/gdk-pixbuf/gdk-pixbuf-2.31.4-intel-2015a.eb +++ b/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.31.4-intel-2015a.eb @@ -1,6 +1,6 @@ easyblock = 'ConfigureMake' -name = 'gdk-pixbuf' +name = 'Gdk-Pixbuf' version = '2.31.4' homepage = 'https://developer.gnome.org/gdk-pixbuf/stable/' diff --git a/easybuild/easyconfigs/g/gdk-pixbuf/gdk-pixbuf-2.31.4-intel-2015b.eb b/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.31.4-intel-2015b.eb similarity index 97% rename from easybuild/easyconfigs/g/gdk-pixbuf/gdk-pixbuf-2.31.4-intel-2015b.eb rename to easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.31.4-intel-2015b.eb index 018df1e421d4835b720ba617fb477bc88272aa3f..628f1553a7e8e225319c22aabf9cf976c7874091 100644 --- a/easybuild/easyconfigs/g/gdk-pixbuf/gdk-pixbuf-2.31.4-intel-2015b.eb +++ b/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.31.4-intel-2015b.eb @@ -1,6 +1,6 @@ easyblock = 'ConfigureMake' -name = 'gdk-pixbuf' +name = 'Gdk-Pixbuf' version = '2.31.4' homepage = 'https://developer.gnome.org/gdk-pixbuf/stable/' diff --git a/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.32.3-intel-2016a.eb b/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.32.3-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..6348507d8db6443c8b5320792db077f1e4e3a3db --- /dev/null +++ b/easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.32.3-intel-2016a.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'Gdk-Pixbuf' +version = '2.32.3' + +homepage = 'https://developer.gnome.org/gdk-pixbuf/stable/' +description = """ + The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. + It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it + was distributed as part of GTK+ 2 but it was split off into a separate package + in preparation for the change to GTK+ 3. +""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] + +glibver = '2.47.5' +dependencies = [ + ('GLib', glibver), + ('libjpeg-turbo', '1.4.2'), + ('libpng', '1.6.21'), + ('LibTIFF', '4.0.6'), + ('GObject-Introspection', '1.47.1') +] + +configopts = "--disable-maintainer-mode --enable-debug=no --enable-introspection=yes " +configopts += "--disable-Bsymbolic --without-gdiplus --enable-shared --enable-static" + +modextrapaths = { + 'XDG_DATA_DIRS': 'share', +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/Geant4/Geant4-9.4.p02-ictce-4.0.6.eb b/easybuild/easyconfigs/g/Geant4/Geant4-9.4.p02-ictce-4.0.6.eb index 32054f56b53a7ebc2ab1949eb9c70bf71650f6b2..dd53f8508842ddf78dae7f69fb94826d1d06a1a2 100644 --- a/easybuild/easyconfigs/g/Geant4/Geant4-9.4.p02-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/Geant4/Geant4-9.4.p02-ictce-4.0.6.eb @@ -6,7 +6,7 @@ description = """Geant4 is a toolkit for the simulation of the passage of partic Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.""" -toolchain = {'name': 'ictce', 'version':'4.0.6'} +toolchain = {'name': 'ictce', 'version': '4.0.6'} source_urls = ['http://geant4.cern.ch/support/source'] sources = ['%(namelower)s.%(version)s.tar.gz'] diff --git a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goalf-1.1.0-no-OFED.eb index b6f358819ffeaeabf5fbccf398e426fe643934f9..fbf3b03c0b5b104cb2e5bfb3add6a19ed005060d 100644 --- a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-goalf-1.1.0-no-OFED.eb @@ -6,7 +6,7 @@ description = """Geant4 is a toolkit for the simulation of the passage of partic Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.""" -toolchain = {'name': 'goalf', 'version':'1.1.0-no-OFED'} +toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} source_urls = ['http://geant4.cern.ch/support/source'] sources = ['%(namelower)s.%(version)s.tar.gz'] diff --git a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-4.0.6.eb b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-4.0.6.eb index d2acaf5f1dc015f712dced0af0ec377ec07a16f4..8eb3941ded72027456217a433e3c5f9acdf94341 100644 --- a/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/Geant4/Geant4-9.5.p01-ictce-4.0.6.eb @@ -6,7 +6,7 @@ description = """Geant4 is a toolkit for the simulation of the passage of partic Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.""" -toolchain = {'name': 'ictce', 'version':'4.0.6'} +toolchain = {'name': 'ictce', 'version': '4.0.6'} source_urls = ['http://geant4.cern.ch/support/source'] sources = ['%(namelower)s.%(version)s.tar.gz'] diff --git a/easybuild/easyconfigs/g/Geant4/Geant4-9.6.p04-intel-2015a.eb b/easybuild/easyconfigs/g/Geant4/Geant4-9.6.p04-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..791ce6652ffc04ceeb117eaf9f5490ae2597bf9a --- /dev/null +++ b/easybuild/easyconfigs/g/Geant4/Geant4-9.6.p04-intel-2015a.eb @@ -0,0 +1,24 @@ +name = 'Geant4' +version = '9.6.p04' + +homepage = 'http://geant4.cern.ch/' +description = """Geant4 is a toolkit for the simulation of the passage of particles through matter. + Its areas of application include high energy, nuclear and accelerator physics, + as well as studies in medical and space science.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://geant4.cern.ch/support/source'] +sources = ['%(namelower)s.%(version)s.tar.gz'] + +dependencies = [ + ('expat', '2.1.0'), + ('CLHEP', '2.1.3.1'), +] + +builddependencies = [('CMake', '3.1.3')] + +configopts = "-DEXPAT_LIBRARY=$EBROOTEXPAT/lib/libexpat.so -DEXPAT_INCLUDE_DIR=$EBROOTEXPAT/include" +configopts += "-DGEANT4_INSTALL_DATA=OFF" + +moduleclass = 'phys' diff --git a/easybuild/easyconfigs/g/GenotypeHarmonizer/GenotypeHarmonizer-1.4.14-Java-1.7.0_80.eb b/easybuild/easyconfigs/g/GenotypeHarmonizer/GenotypeHarmonizer-1.4.14-Java-1.7.0_80.eb index 0fa0ab2a82059ddfd643b9cd7fadd2967e62876a..935c3f665fc3db29ad6446b328095bc6eab7f87b 100644 --- a/easybuild/easyconfigs/g/GenotypeHarmonizer/GenotypeHarmonizer-1.4.14-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/g/GenotypeHarmonizer/GenotypeHarmonizer-1.4.14-Java-1.7.0_80.eb @@ -7,7 +7,7 @@ homepage = 'https://github.com/molgenis/systemsgenetics/wiki/Genotype-Harmonizer description = """The Genotype Harmonizer is an easy to use command-line tool that allows harmonization of genotype data stored using different file formats with different and potentially unknown strands.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} java = 'Java' javaver = '1.7.0_80' @@ -15,7 +15,7 @@ versionsuffix = '-%s-%s' % (java, javaver) dependencies = [(java, javaver)] source_urls = ['http://www.molgenis.org/downloads/GenotypeHarmonizer/'] -sources = ['GenotypeHarmonizer-%(version)s-dist.tar.gz' ] +sources = ['GenotypeHarmonizer-%(version)s-dist.tar.gz'] checksums = ['0a7b041efdd7a5d7ced0ae48eb4a9e06'] diff --git a/easybuild/easyconfigs/g/GeoIP-C/GeoIP-C-1.6.7-intel-2015a.eb b/easybuild/easyconfigs/g/GeoIP-C/GeoIP-C-1.6.7-intel-2015a.eb index 9dfefbcbfd90e8ecf035ca9b838a31377a50a7d5..1bee539962390b313af5ab13c5f788caa688dbf6 100644 --- a/easybuild/easyconfigs/g/GeoIP-C/GeoIP-C-1.6.7-intel-2015a.eb +++ b/easybuild/easyconfigs/g/GeoIP-C/GeoIP-C-1.6.7-intel-2015a.eb @@ -13,7 +13,7 @@ sources = ['GeoIP-%(version)s.tar.gz'] sanity_check_paths = { 'files': ['bin/geoiplookup', 'bin/geoiplookup6', 'include/GeoIPCity.h', 'include/GeoIP.h', - 'lib/libGeoIP.a', 'lib/libGeoIP.so', 'lib/pkgconfig/geoip.pc'], + 'lib/libGeoIP.a', 'lib/libGeoIP.%s' % SHLIB_EXT, 'lib/pkgconfig/geoip.pc'], 'dirs': ['share/man'], } diff --git a/easybuild/easyconfigs/g/GeoIP-C/GeoIP-C-1.6.7-intel-2015b.eb b/easybuild/easyconfigs/g/GeoIP-C/GeoIP-C-1.6.7-intel-2015b.eb index 1ea1832677b25ef7689ba5b5b80e530b3936e748..052d35f001f76fb36b0402628789ca0dac5e0551 100644 --- a/easybuild/easyconfigs/g/GeoIP-C/GeoIP-C-1.6.7-intel-2015b.eb +++ b/easybuild/easyconfigs/g/GeoIP-C/GeoIP-C-1.6.7-intel-2015b.eb @@ -13,7 +13,7 @@ sources = ['GeoIP-%(version)s.tar.gz'] sanity_check_paths = { 'files': ['bin/geoiplookup', 'bin/geoiplookup6', 'include/GeoIPCity.h', 'include/GeoIP.h', - 'lib/libGeoIP.a', 'lib/libGeoIP.so', 'lib/pkgconfig/geoip.pc'], + 'lib/libGeoIP.a', 'lib/libGeoIP.%s' % SHLIB_EXT, 'lib/pkgconfig/geoip.pc'], 'dirs': ['share/man'], } diff --git a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb index 9439f32c2bee41cae604ebd89d424a87ec9b8f96..97a129a9e5a916b3842f3c9026c22a6228c29d2d 100644 --- a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb +++ b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.14-intel-2014b.eb @@ -37,7 +37,7 @@ buildopts = [' ', 'so'] installopts = [' ', 'soinstall'] sanity_check_paths = { - 'files': ['bin/gs', 'bin/ps2pdf', 'lib/libgs.so'], + 'files': ['bin/gs', 'bin/ps2pdf', 'lib/libgs.%s' % SHLIB_EXT], 'dirs': ['include'] } diff --git a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.16-goolf-1.7.20.eb b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.16-goolf-1.7.20.eb index 41de713278c1e3b91f359ce115801eb709adf51b..4e828aad873bfcebdb73eca5e146e2cf372fc006 100644 --- a/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.16-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/g/Ghostscript/Ghostscript-9.16-goolf-1.7.20.eb @@ -17,7 +17,7 @@ checksums = ['829319325bbdb83f5c81379a8f86f38f'] dependencies = [ ('zlib', '1.2.8'), - ('libpng', '1.6.17'), + ('libpng', '1.6.17'), ('freetype', '2.6'), ('fontconfig', '2.11.94'), ('GLib', '2.44.1'), diff --git a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb index c23e8f17a12714c5893ad321729d20b2f5e9cc2e..aee7aa31e0d8e0d995475d8ef5b924ed7d4fe7e0 100644 --- a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb +++ b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2014b.eb @@ -42,8 +42,8 @@ builddependencies = [ ] patches = [ - 'Graphviz-2.38.0_icc_vmalloc.patch', - 'Graphviz-2.38.0_icc_sfio.patch', + 'Graphviz-2.38.0_icc_vmalloc.patch', + 'Graphviz-2.38.0_icc_sfio.patch', ] configopts = '--enable-guile=no --enable-lua=no --enable-ocaml=no ' @@ -53,7 +53,7 @@ prebuildopts = 'qmake -o cmd/gvedit/qMakefile cmd/gvedit/gvedit.pro && ' sanity_check_paths = { 'files': ['bin/cluster', 'bin/dot', 'bin/gvmap', - 'lib/libcdt.so', 'lib/libgvc.so', 'lib/libxdot.so'], + 'lib/libcdt.%s' % SHLIB_EXT, 'lib/libgvc.%s' % SHLIB_EXT, 'lib/libxdot.%s' % SHLIB_EXT], 'dirs': ['include'] } diff --git a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2015a-Python-2.7.10.eb index c5e6a0512b1c00cafee989adddf11438caecbbd4..231a5ddb6f76d9f2472c91c66f44d92e3f71e009 100644 --- a/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/g/Graphviz/Graphviz-2.38.0-intel-2015a-Python-2.7.10.eb @@ -44,8 +44,8 @@ builddependencies = [ ] patches = [ - 'Graphviz-2.38.0_icc_vmalloc.patch', - 'Graphviz-2.38.0_icc_sfio.patch', + 'Graphviz-2.38.0_icc_vmalloc.patch', + 'Graphviz-2.38.0_icc_sfio.patch', ] configopts = '--enable-guile=no --enable-lua=no --enable-ocaml=no ' @@ -55,7 +55,7 @@ prebuildopts = 'qmake -o cmd/gvedit/qMakefile cmd/gvedit/gvedit.pro && ' sanity_check_paths = { 'files': ['bin/cluster', 'bin/dot', 'bin/gvmap', - 'lib/libcdt.so', 'lib/libgvc.so', 'lib/libxdot.so'], + 'lib/libcdt.%s' % SHLIB_EXT, 'lib/libgvc.%s' % SHLIB_EXT, 'lib/libxdot.%s' % SHLIB_EXT], 'dirs': ['include'] } diff --git a/easybuild/easyconfigs/g/Greenlet/Greenlet-0.4.2-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/g/Greenlet/Greenlet-0.4.2-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..9cbb38d0514baf9a6cbac19983d4223536ed3603 --- /dev/null +++ b/easybuild/easyconfigs/g/Greenlet/Greenlet-0.4.2-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,33 @@ +easyblock = 'PythonPackage' + +name = 'Greenlet' +version = '0.4.2' + +homepage = 'https://github.com/python-greenlet/greenlet' +description = """The greenlet package is a spin-off of Stackless, a version of CPython that +supports micro-threads called "tasklets". Tasklets run pseudo-concurrently (typically in a single +or a few OS-level threads) and are synchronized with data exchanges on "channels". +A "greenlet", on the other hand, is a still more primitive notion of micro-thread with no implicit +scheduling; coroutines, in other words. This is useful when you want to control exactly when your code runs. +""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_ZIP] + +patches = ['Greenlet-%(version)s_icc_no_amd64_predefined_in_prepocessor.patch'] + +pyver = '2.7.10' +versionsuffix = "-Python-%s" % pyver + +dependencies = [('Python', pyver)] + +pyshortver = '.'.join(pyver.split('.')[:2]) +sanity_check_paths = { + 'files': ['include/python%s/greenlet/greenlet.h' % pyshortver, + 'lib/python%s/site-packages/greenlet.%s' % (pyshortver, SHLIB_EXT)], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/Gtkmm/Gtkmm-2.24.4-intel-2015a.eb b/easybuild/easyconfigs/g/Gtkmm/Gtkmm-2.24.4-intel-2015a.eb index 8e1cb764c0a1ba19d3813fbe54457af48da7a4fb..042f52f5f8e5454a0164e38a8b1318cc0866c324 100644 --- a/easybuild/easyconfigs/g/Gtkmm/Gtkmm-2.24.4-intel-2015a.eb +++ b/easybuild/easyconfigs/g/Gtkmm/Gtkmm-2.24.4-intel-2015a.eb @@ -15,12 +15,12 @@ sources = [SOURCELOWER_TAR_XZ] dependencies = [ ('Atkmm', '2.22.7'), - ('gtk+', '2.24.28'), + ('GTK+', '2.24.28'), ('Pangomm', '2.36.0'), ] sanity_check_paths = { - 'files': ['lib/libgtkmm-2.4.so.1'], + 'files': ['lib/libgtkmm-2.4.so.1'], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/Gtkmm/Gtkmm-2.24.4-intel-2015b.eb b/easybuild/easyconfigs/g/Gtkmm/Gtkmm-2.24.4-intel-2015b.eb index f4d4f0209a8693f533cd5f477a6387d1379c1e05..3e73c97004c020ff74e0b6a4c690f95a93f96a92 100644 --- a/easybuild/easyconfigs/g/Gtkmm/Gtkmm-2.24.4-intel-2015b.eb +++ b/easybuild/easyconfigs/g/Gtkmm/Gtkmm-2.24.4-intel-2015b.eb @@ -15,12 +15,12 @@ sources = [SOURCELOWER_TAR_XZ] dependencies = [ ('Atkmm', '2.22.7'), - ('gtk+', '2.24.28'), + ('GTK+', '2.24.28'), ('Pangomm', '2.36.0'), ] sanity_check_paths = { - 'files': ['lib/libgtkmm-2.4.so.1'], + 'files': ['lib/libgtkmm-2.4.so.1'], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.1.13.eb b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.1.13.eb index ea88dd569c366f085c21442e15688cd8d793b545..cff1cf8e33694ec01a1c22ca4ec51e86837559aa 100644 --- a/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/gettext/gettext-0.18.2-ictce-4.1.13.eb @@ -8,7 +8,7 @@ description = """GNU `gettext' is an important step for the GNU Translation Proj build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation""" -toolchain = {'name': 'ictce', 'version': '4.1.13'} +toolchain = {'name': 'ictce', 'version': '4.1.13'} sources = [SOURCE_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/g/gettext/gettext-0.19.6-intel-2016a.eb b/easybuild/easyconfigs/g/gettext/gettext-0.19.6-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..d58aad19704156cd425a3c24894c1991bfd0c3b6 --- /dev/null +++ b/easybuild/easyconfigs/g/gettext/gettext-0.19.6-intel-2016a.eb @@ -0,0 +1,18 @@ +easyblock = 'ConfigureMake' + +name = 'gettext' +version = '0.19.6' + +homepage = 'http://www.gnu.org/software/gettext/' +description = """GNU `gettext' is an important step for the GNU Translation Project, as it is an asset on which we may +build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools +and documentation""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = '--without-emacs' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb index 75c6bb092fe802f903df8c843f8393473102e008..4c4de493037651fe3ccdbb025998f1537947df5f 100644 --- a/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/git/git-1.7.12-ictce-5.3.0.eb @@ -30,8 +30,8 @@ dependencies = [('gettext', '0.18.2')] configopts = "--enable-pthreads='-lpthread'" sanity_check_paths = { - 'files': ["bin/git"], - 'dirs': [] - } + 'files': ["bin/git"], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goalf-1.1.0-no-OFED.eb index fefd3eeaab57f8ff4713c8362b3238996f11a9bc..f9c5e14a8e3b42f6e1a1e44e40b8f869a894ca55 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goalf-1.1.0-no-OFED.eb @@ -4,7 +4,7 @@ name = 'glproto' version = '1.4.16' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = "X protocol and ancillary headers" +description = "X protocol and ancillary headers" toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'optarch': True} @@ -13,9 +13,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', - 'glxtokens', 'internal/glcore']], - 'dirs': [] - } + 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', 'glxtokens', 'internal/glcore']], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goolf-1.4.10.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goolf-1.4.10.eb index 2c1515c3ee49d1afc382fe72781a5a617c762fd3..06b846c04cf64bc56723494b711a004e9489978b 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-goolf-1.4.10.eb @@ -4,7 +4,7 @@ name = 'glproto' version = '1.4.16' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = "X protocol and ancillary headers" +description = "X protocol and ancillary headers" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True} @@ -12,9 +12,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', - 'glxtokens', 'internal/glcore']], - 'dirs': [] - } + 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', 'glxtokens', 'internal/glcore']], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.0.6.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.0.6.eb index 1316bedb2ab539ae2f0ad3264e0189cb91b1b70e..42dc60dd5eaa4e48e825ae00ae2c3bdb8257ac76 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.0.6.eb @@ -4,7 +4,7 @@ name = 'glproto' version = '1.4.16' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = "X protocol and ancillary headers" +description = "X protocol and ancillary headers" toolchain = {'name': 'ictce', 'version': '4.0.6'} toolchainopts = {'optarch': True} @@ -13,9 +13,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', - 'glxtokens', 'internal/glcore']], - 'dirs': [] - } + 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', 'glxtokens', 'internal/glcore']], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.1.13.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.1.13.eb index 282c406ca1bd5f0daa1331c8a8c459c22f74726f..8b99a901c9ba30ae2af29a320cbeac0cedecd3c7 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-4.1.13.eb @@ -4,7 +4,7 @@ name = 'glproto' version = '1.4.16' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = "X protocol and ancillary headers" +description = "X protocol and ancillary headers" toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'optarch': True} @@ -13,8 +13,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', - 'glxtokens', 'internal/glcore']], + 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', 'glxtokens', 'internal/glcore']], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.3.0.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.3.0.eb index efe43edfabb30e1a07542c99c16fbcda730418ab..6ccc91bb752baaf87e6489e59b798f149c6af04e 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.3.0.eb @@ -4,7 +4,7 @@ name = 'glproto' version = '1.4.16' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = "X protocol and ancillary headers" +description = "X protocol and ancillary headers" toolchain = {'name': 'ictce', 'version': '5.3.0'} @@ -14,9 +14,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', - 'glxtokens', 'internal/glcore']], - 'dirs': [] - } + 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', 'glxtokens', 'internal/glcore']], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.5.0.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.5.0.eb index 828a170d2017e5d00d2cbe5343fdee7f75aaf3d4..256687687906470d69bdc3f6a241e0c009023571 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.16-ictce-5.5.0.eb @@ -13,8 +13,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', - 'glxtokens', 'internal/glcore']], + 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', 'glxtokens', 'internal/glcore']], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.17-intel-2015a.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.17-intel-2015a.eb index e6478944220aff106ad7a49015f88255bc326e02..4eb87a66efd1fe6b55f8d992fb6ca1fe848911ec 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.17-intel-2015a.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.17-intel-2015a.eb @@ -13,8 +13,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', - 'glxtokens', 'internal/glcore']], + 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', 'glxtokens', 'internal/glcore']], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/glproto/glproto-1.4.17-intel-2015b.eb b/easybuild/easyconfigs/g/glproto/glproto-1.4.17-intel-2015b.eb index 251ef3579842b43f1622ab90344b3628f3328f12..a1f9a0b9d22a071f09d996b820ddeaa372380c92 100644 --- a/easybuild/easyconfigs/g/glproto/glproto-1.4.17-intel-2015b.eb +++ b/easybuild/easyconfigs/g/glproto/glproto-1.4.17-intel-2015b.eb @@ -13,8 +13,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', - 'glxtokens', 'internal/glcore']], + 'files': ['include/GL/%s.h' % x for x in ['glxint', 'glxmd', 'glxproto', 'glxtokens', 'internal/glcore']], 'dirs': [], } diff --git a/easybuild/easyconfigs/g/gmvolf/gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/g/gmvolf/gmvolf-1.7.12rc1.eb index c3fb773c88fcdcc25f006797727a37d6cb67bbf6..50901901bf3400bd6a93818b15c39ce45e1c3f18 100644 --- a/easybuild/easyconfigs/g/gmvolf/gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/g/gmvolf/gmvolf-1.7.12rc1.eb @@ -32,6 +32,6 @@ dependencies = [ (blaslib, blasver, blassuff, comp_mpi_tc), ('FFTW', '3.3.3', '', comp_mpi_tc), ('ScaLAPACK', '2.0.2', blas, comp_mpi_tc), -] +] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb index 81a026fc55888cf7d1f16fbcde2f0db787261161..bd0bbb0ca0db768196110c0ee569439c878d7730 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goalf-1.1.0-no-OFED.eb @@ -24,8 +24,8 @@ source_urls = [('http://sourceforge.net/projects/gnuplot/files', 'download')] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sanity_check_paths = { - 'files': ['bin/gnuplot'], - 'dirs': [] - } + 'files': ['bin/gnuplot'], + 'dirs': [] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb index 9c6317ae8b142e3935430efca5c1a9f86d9b36fd..3d45dffc3f5c2883578a85493949d6e2791b7376 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-goolf-1.4.10.eb @@ -23,8 +23,8 @@ source_urls = [('http://sourceforge.net/projects/gnuplot/files', 'download')] toolchain = {'name': 'goolf', 'version': '1.4.10'} sanity_check_paths = { - 'files': ['bin/gnuplot'], - 'dirs': [] - } + 'files': ['bin/gnuplot'], + 'dirs': [] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb index a473b4546fdc53316bf822d82bb3984b605f4712..23b0d23f05c8f65830a7cb89f7aacfbc235cbb80 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-4.0.6.eb @@ -24,8 +24,8 @@ source_urls = [('http://sourceforge.net/projects/gnuplot/files', 'download')] toolchain = {'version': '4.0.6', 'name': 'ictce'} sanity_check_paths = { - 'files': ['bin/gnuplot'], - 'dirs': [] - } + 'files': ['bin/gnuplot'], + 'dirs': [] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb index c4db96bf9619fec2d40ae7b2b2718ac495b2113e..b95685cff8af9a42f7c7aab5832f352a11c6ff4a 100644 --- a/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gnuplot/gnuplot-4.6.0-ictce-5.3.0.eb @@ -25,8 +25,8 @@ source_urls = [('http://sourceforge.net/projects/gnuplot/files', 'download')] toolchain = {'name': 'ictce', 'version': '5.3.0'} sanity_check_paths = { - 'files': ['bin/gnuplot'], - 'dirs': [] - } + 'files': ['bin/gnuplot'], + 'dirs': [] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goalf-1.1.0-no-OFED.eb index 8746928b55d8d5042f89d418ecbb872851e40541..6090cb398e1f6908f6f0f7fb38e55229b8658126 100644 --- a/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goalf-1.1.0-no-OFED.eb @@ -12,18 +12,18 @@ source_urls = ['ftp://ftp.gnutls.org/pub/gnutls/'] sources = [SOURCE_TAR_XZ] dependencies = [ - ('GMP', '5.0.5'), - ('nettle', '2.6'), - ('guile', '1.8.8'), - ] + ('GMP', '5.0.5'), + ('nettle', '2.6'), + ('guile', '1.8.8'), +] configopts = "--with-guile-site-dir=$EBROOTGUILE" sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['certtool', 'danetool', 'gnutls-cli', 'gnutls-cli-debug', - 'gnutls-serv', 'ocsptool', 'psktool', 'srptool']] + - ['lib/libgnutls%s' % x for x in ['.a', 'xx.a', '-xssl.a', '-openssl.a']], - 'dirs': ['include/gnutls'], - } + 'files': ['bin/%s' % x for x in ['certtool', 'danetool', 'gnutls-cli', 'gnutls-cli-debug', + 'gnutls-serv', 'ocsptool', 'psktool', 'srptool']] + + ['lib/libgnutls%s' % x for x in ['.a', 'xx.a', '-xssl.a', '-openssl.a']], + 'dirs': ['include/gnutls'], +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goolf-1.4.10.eb index 110dff5cb7eee39836546f287536d2277073ef51..f7c7021f17c8dbd48a4fa1c34d2d9ff6d9d3de1f 100644 --- a/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gnutls/gnutls-3.1.8-goolf-1.4.10.eb @@ -11,18 +11,18 @@ source_urls = ['ftp://ftp.gnutls.org/pub/gnutls/'] sources = [SOURCE_TAR_XZ] dependencies = [ - ('GMP', '5.0.5'), - ('nettle', '2.6'), - ('guile', '1.8.8'), - ] + ('GMP', '5.0.5'), + ('nettle', '2.6'), + ('guile', '1.8.8'), +] configopts = "--with-guile-site-dir=$EBROOTGUILE" sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['certtool', 'danetool', 'gnutls-cli', 'gnutls-cli-debug', - 'gnutls-serv', 'ocsptool', 'psktool', 'srptool']] + - ['lib/libgnutls%s' % x for x in ['.a', 'xx.a', '-xssl.a', '-openssl.a']], - 'dirs': ['include/gnutls'], - } + 'files': ['bin/%s' % x for x in ['certtool', 'danetool', 'gnutls-cli', 'gnutls-cli-debug', + 'gnutls-serv', 'ocsptool', 'psktool', 'srptool']] + + ['lib/libgnutls%s' % x for x in ['.a', 'xx.a', '-xssl.a', '-openssl.a']], + 'dirs': ['include/gnutls'], +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/g/gnutls/gnutls-3.4.7-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/g/gnutls/gnutls-3.4.7-GNU-4.9.3-2.25.eb index c59e536de396ee2fbdbb7e3d999c4891ad40e4c3..d883037773378e2bb3bb4587b6e5cebf29b0cf34 100644 --- a/easybuild/easyconfigs/g/gnutls/gnutls-3.4.7-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/g/gnutls/gnutls-3.4.7-GNU-4.9.3-2.25.eb @@ -31,8 +31,8 @@ configopts = "--with-guile-site-dir=$EBROOTGUILE --enable-openssl-compatibility sanity_check_paths = { 'files': ['bin/%s' % x for x in ['certtool', 'crywrap', 'gnutls-cli', 'gnutls-cli-debug', - 'gnutls-serv', 'ocsptool', 'psktool', 'srptool']] + - ['lib/libgnutls%s' % x for x in ['.so', 'xx.so', '-openssl.so']] + + 'gnutls-serv', 'ocsptool', 'psktool', 'srptool']] + + ['lib/libgnutls%s' % x for x in ['.%s' % SHLIB_EXT, 'xx.%s' % SHLIB_EXT, '-openssl.%s' % SHLIB_EXT]] + ['lib/guile/%s/guile-gnutls-v-2.so' % guileshortver], 'dirs': ['include/gnutls'], } diff --git a/easybuild/easyconfigs/g/gompi/gompi-2016a.eb b/easybuild/easyconfigs/g/gompi/gompi-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..793e78b5ef19fe5acf73f30e6d2ebc0232d72ef5 --- /dev/null +++ b/easybuild/easyconfigs/g/gompi/gompi-2016a.eb @@ -0,0 +1,20 @@ +easyblock = "Toolchain" + +name = 'gompi' +version = '2016a' + +homepage = '(none)' +description = """GNU Compiler Collection (GCC) based compiler toolchain, + including OpenMPI for MPI support.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +gccver = '4.9.3-2.25' + +# compiler toolchain dependencies +dependencies = [ + ('GCC', gccver), # includes both GCC 4.9.3 and binutils 2.25 + ('OpenMPI', '1.10.2', '', ('GCC', gccver)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goalf-1.1.0-no-OFED.eb index a5318892cfa4b07fdb315a2603190e82708fbaed..62b829ab9bda8ddcca81345244c3390a68435498 100644 --- a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goalf-1.1.0-no-OFED.eb @@ -15,8 +15,8 @@ source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['bin/gperf'], - 'dirs': [] - } + 'files': ['bin/gperf'], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goolf-1.4.10.eb index ef454942121a60f28c5c0f344fe86398df72523f..7b5f1aee641a7d47e2d6c957acbb3d5170f29044 100644 --- a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-goolf-1.4.10.eb @@ -14,8 +14,8 @@ source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['bin/gperf'], - 'dirs': [] - } + 'files': ['bin/gperf'], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-4.0.6.eb b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-4.0.6.eb index 574b337302a453601ea407d64e2ee0cf930eea3b..6b2cf276843676fc4c3354374b5e36ea4c1dd842 100644 --- a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-4.0.6.eb @@ -15,8 +15,8 @@ source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['bin/gperf'], - 'dirs': [] - } + 'files': ['bin/gperf'], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-5.3.0.eb b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-5.3.0.eb index c2990d170235a226ac7932a7a8828a8d24029b2b..d55ea61bd078a9d4bf52469436a8d12cb71f3af9 100644 --- a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-ictce-5.3.0.eb @@ -16,8 +16,8 @@ source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['bin/gperf'], - 'dirs': [] - } + 'files': ['bin/gperf'], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/gperf/gperf-3.0.4-intel-2016a.eb b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..5938576aa76b14062f227b7c89e36fe487de0b86 --- /dev/null +++ b/easybuild/easyconfigs/g/gperf/gperf-3.0.4-intel-2016a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'gperf' +version = '3.0.4' + +homepage = 'http://www.gnu.org/software/gperf/' +description = """GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash + function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash + function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single + string comparison only.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['bin/gperf'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/gpsmpi/gpsmpi-2014.12.eb b/easybuild/easyconfigs/g/gpsmpi/gpsmpi-2014.12.eb index a65b44153943c3f9f7032e5bd825149cf5ad0d7e..57ee8055446b96f1a91491ef04a79f03b7537b58 100644 --- a/easybuild/easyconfigs/g/gpsmpi/gpsmpi-2014.12.eb +++ b/easybuild/easyconfigs/g/gpsmpi/gpsmpi-2014.12.eb @@ -21,8 +21,7 @@ comp = (compname, compver) dependencies = [ comp, - (mpilib, mpiver, '', comp ), + (mpilib, mpiver, '', comp), ] moduleclass = 'toolchain' - diff --git a/easybuild/easyconfigs/g/gpsolf/gpsolf-2014.12.eb b/easybuild/easyconfigs/g/gpsolf/gpsolf-2014.12.eb index 5eacc9a99c2123dcff0651bac8885cc46a39d422..6a6f1377bc82102b869aaf1d10f78ab9a5f624f1 100644 --- a/easybuild/easyconfigs/g/gpsolf/gpsolf-2014.12.eb +++ b/easybuild/easyconfigs/g/gpsolf/gpsolf-2014.12.eb @@ -33,4 +33,3 @@ dependencies = [ ] moduleclass = 'toolchain' - diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goalf-1.1.0-no-OFED.eb index 5cea12d320bd02b03f168adc785696153fe6c0a8..ef2423ee53111d75fd2653ca06cfe8861c3f8a75 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goalf-1.1.0-no-OFED.eb @@ -14,8 +14,8 @@ source_urls = ['https://software.ecmwf.int/wiki/download/attachments/3473437/'] sources = [SOURCE_TAR_GZ] dependencies = [ - ('JasPer', '1.900.1'), - ] + ('JasPer', '1.900.1'), +] preconfigopts = 'FC=$F90' configopts = '--with-jasper=$EBROOTJASPER' diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goolf-1.4.10.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goolf-1.4.10.eb index 8e5630b19cf6c34aa0f46afa817e73c25e7b1bcf..c0f9f1c6d84ab72e71f15f13bb063ed8b4e3fa5c 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-goolf-1.4.10.eb @@ -13,8 +13,8 @@ source_urls = ['https://software.ecmwf.int/wiki/download/attachments/3473437/'] sources = [SOURCE_TAR_GZ] dependencies = [ - ('JasPer', '1.900.1'), - ] + ('JasPer', '1.900.1'), +] preconfigopts = 'FC=$F90' configopts = '--with-jasper=$EBROOTJASPER' diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-4.1.13.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-4.1.13.eb index 2e926b4cab4f3127fd1bb4d24c83b671832e7a25..384aa93ebf4a83eb860f32ea75f465dc46ba0e19 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-4.1.13.eb @@ -14,8 +14,8 @@ source_urls = ['https://software.ecmwf.int/wiki/download/attachments/3473437/'] sources = [SOURCE_TAR_GZ] dependencies = [ - ('JasPer', '1.900.1'), - ] + ('JasPer', '1.900.1'), +] preconfigopts = 'FC=$F90' configopts = '--with-jasper=$EBROOTJASPER' diff --git a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-5.3.0.eb b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-5.3.0.eb index 831f1d1677c41735888b01eeda0f393cce1af7a3..048ac9570d3e78b0aeadcc9724ae231d1ea0b0de 100644 --- a/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/grib_api/grib_api-1.9.18-ictce-5.3.0.eb @@ -15,8 +15,8 @@ source_urls = ['https://software.ecmwf.int/wiki/download/attachments/3473437/'] sources = [SOURCE_TAR_GZ] dependencies = [ - ('JasPer', '1.900.1'), - ] + ('JasPer', '1.900.1'), +] preconfigopts = 'FC=$F90' configopts = '--with-jasper=$EBROOTJASPER' diff --git a/easybuild/easyconfigs/g/gtest/gtest-1.6.0-intel-2014b.eb b/easybuild/easyconfigs/g/gtest/gtest-1.6.0-intel-2014b.eb index 785c4e7264232619bf0e6e91659403c6b2a020ca..cd4e4b08f5f6cd3b249a9939519cfc38e8c517f0 100644 --- a/easybuild/easyconfigs/g/gtest/gtest-1.6.0-intel-2014b.eb +++ b/easybuild/easyconfigs/g/gtest/gtest-1.6.0-intel-2014b.eb @@ -15,7 +15,7 @@ with_configure = True files_to_copy = ['lib', 'include'] -sanity_check_paths={ +sanity_check_paths = { 'files': ['lib/libgtest.la', 'lib/libgtest_main.la'], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/g/gtkglext/gtkglext-1.2.0-intel-2015b.eb b/easybuild/easyconfigs/g/gtkglext/gtkglext-1.2.0-intel-2015b.eb index 4169a1657f2162b770e66e9ed8da1b9d67dff452..a0f2ba3078e85e4a60fa1fa04afa23d2e2ea8946 100644 --- a/easybuild/easyconfigs/g/gtkglext/gtkglext-1.2.0-intel-2015b.eb +++ b/easybuild/easyconfigs/g/gtkglext/gtkglext-1.2.0-intel-2015b.eb @@ -15,14 +15,14 @@ patches = ['gtkglext-%(version)s_fix-gtk-compat.patch'] pangover = '1.37.1' dependencies = [ - ('gtk+', '2.24.28'), + ('GTK+', '2.24.28'), ('Pango', pangover), ('pangox-compat', '0.0.2', '-Pango-%s' % pangover), ] sanity_check_paths = { - 'files': ['lib/gtkglext-1.0/include/gdkglext-config.h', 'lib/libgdkglext-x11-1.0.a', 'lib/libgdkglext-x11-1.0.so', - 'lib/libgtkglext-x11-1.0.a', 'lib/libgtkglext-x11-1.0.so'], + 'files': ['lib/gtkglext-1.0/include/gdkglext-config.h', 'lib/libgdkglext-x11-1.0.a', 'lib/libgdkglext-x11-1.0.%s' % SHLIB_EXT, + 'lib/libgtkglext-x11-1.0.a', 'lib/libgtkglext-x11-1.0.%s' % SHLIB_EXT], 'dirs': ['include/gtkglext-1.0/gdk', 'include/gtkglext-1.0/gtk', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-GNU-4.9.3-2.25.eb index 561706f56f1fc974f7f79811b697217ca03274b5..65946ec224e68fda099e06b38735290f6b2ba104 100644 --- a/easybuild/easyconfigs/g/guile/guile-1.8.8-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-GNU-4.9.3-2.25.eb @@ -24,7 +24,8 @@ dependencies = [ configopts = " --enable-error-on-warning=no" sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["guile", 'guile-config', 'guile-snarf', 'guile-tools']] + ["lib/libguile.a", "include/libguile.h"], + 'files': ["bin/%s" % x for x in ["guile", 'guile-config', 'guile-snarf', 'guile-tools']] + + ["lib/libguile.a", "include/libguile.h"], 'dirs': [] } diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-foss-2015b.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..8e2c6a3db096ee7443693005d5851547afd0c7f3 --- /dev/null +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-foss-2015b.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'guile' +version = '1.8.8' + +homepage = 'http://www.gnu.org/software/guile' +description = """Guile is the GNU Ubiquitous Intelligent Language for Extensions, + the official extension language for the GNU operating system.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [ + ('libtool', '2.4.6', '', ('GNU', '4.9.3-2.25')), + ('GMP', '6.0.0a'), + ('libunistring', '0.9.3'), + ('pkg-config', '0.27.1'), + ('libffi', '3.0.13'), + ('libreadline', '6.3'), +] + +configopts = " --enable-error-on-warning=no" + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["guile", 'guile-config', 'guile-snarf', 'guile-tools']] + + ["lib/libguile.a", "include/libguile.h"], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-goalf-1.1.0-no-OFED.eb index 17fa80e4dfa8120878e3ce38eadf03461d44b70c..35f61dcc34e7f05becb8db06d3180ae926594a51 100644 --- a/easybuild/easyconfigs/g/guile/guile-1.8.8-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-goalf-1.1.0-no-OFED.eb @@ -13,19 +13,20 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] dependencies = [ - ('libtool', '2.4.2'), - ('GMP', '5.0.5'), - ('libunistring', '0.9.3'), - ('pkg-config', '0.27.1'), - ('libffi', '3.0.11'), - ('libreadline', '6.2'), - ] + ('libtool', '2.4.2'), + ('GMP', '5.0.5'), + ('libunistring', '0.9.3'), + ('pkg-config', '0.27.1'), + ('libffi', '3.0.11'), + ('libreadline', '6.2'), +] configopts = " --enable-error-on-warning=no" sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["guile", 'guile-config', 'guile-snarf', 'guile-tools']] + ["lib/libguile.a", "include/libguile.h"], - 'dirs': [] - } + 'files': ["bin/%s" % x for x in ["guile", 'guile-config', 'guile-snarf', 'guile-tools']] + + ["lib/libguile.a", "include/libguile.h"], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-goolf-1.4.10.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-goolf-1.4.10.eb index 80c9c684315e7d6bdb73407d3249c3fb41a53bea..1ff3a6fc786dc4a56adb72b583124c5613f6aabd 100644 --- a/easybuild/easyconfigs/g/guile/guile-1.8.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-goolf-1.4.10.eb @@ -12,19 +12,20 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] dependencies = [ - ('libtool', '2.4.2'), - ('GMP', '5.0.5'), - ('libunistring', '0.9.3'), - ('pkg-config', '0.27.1'), - ('libffi', '3.0.11'), - ('libreadline', '6.2'), - ] + ('libtool', '2.4.2'), + ('GMP', '5.0.5'), + ('libunistring', '0.9.3'), + ('pkg-config', '0.27.1'), + ('libffi', '3.0.11'), + ('libreadline', '6.2'), +] configopts = " --enable-error-on-warning=no" sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["guile", 'guile-config', 'guile-snarf', 'guile-tools']] + ["lib/libguile.a", "include/libguile.h"], - 'dirs': [] - } + 'files': ["bin/%s" % x for x in ["guile", 'guile-config', 'guile-snarf', 'guile-tools']] + + ["lib/libguile.a", "include/libguile.h"], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-4.0.6.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-4.0.6.eb index 67e9066e3ce679d5f24d3a83b862798c0608c50f..88054289c0763f8a4426be409b2f3b34ab51a1e3 100644 --- a/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-4.0.6.eb @@ -13,19 +13,20 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] dependencies = [ - ('libtool', '2.4.2'), - ('GMP', '5.0.5'), - ('libunistring', '0.9.3'), - ('pkg-config', '0.27.1'), - ('libffi', '3.0.11'), - ('libreadline', '6.2'), - ] + ('libtool', '2.4.2'), + ('GMP', '5.0.5'), + ('libunistring', '0.9.3'), + ('pkg-config', '0.27.1'), + ('libffi', '3.0.11'), + ('libreadline', '6.2'), +] configopts = " --enable-error-on-warning=no" sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["guile", 'guile-config', 'guile-snarf', 'guile-tools']] + ["lib/libguile.a", "include/libguile.h"], - 'dirs': [] - } + 'files': ["bin/%s" % x for x in ["guile", 'guile-config', 'guile-snarf', 'guile-tools']] + + ["lib/libguile.a", "include/libguile.h"], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-5.3.0.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-5.3.0.eb index 18eb7970f8af91dcf4966a33a5d8c8416ff136d6..0ed91b303989983b225ddc1d5c671b51bf1fd813 100644 --- a/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-ictce-5.3.0.eb @@ -24,7 +24,8 @@ dependencies = [ configopts = " --enable-error-on-warning=no" sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["guile", 'guile-config', 'guile-snarf', 'guile-tools']] + ["lib/libguile.a", "include/libguile.h"], + 'files': ["bin/%s" % x for x in ["guile", 'guile-config', 'guile-snarf', 'guile-tools']] + + ["lib/libguile.a", "include/libguile.h"], 'dirs': [] } diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-intel-2015a.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-intel-2015a.eb index d66e7cf11837a739f0a6cd0d3c38ebb1938643f2..d10a3259ca1441faf4d7906c0ba5534603b4aa5d 100644 --- a/easybuild/easyconfigs/g/guile/guile-1.8.8-intel-2015a.eb +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-intel-2015a.eb @@ -24,7 +24,8 @@ dependencies = [ configopts = " --enable-error-on-warning=no" sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["guile", 'guile-config', 'guile-snarf', 'guile-tools']] + ["lib/libguile.a", "include/libguile.h"], + 'files': ["bin/%s" % x for x in ["guile", 'guile-config', 'guile-snarf', 'guile-tools']] + + ["lib/libguile.a", "include/libguile.h"], 'dirs': [] } diff --git a/easybuild/easyconfigs/g/guile/guile-1.8.8-intel-2015b.eb b/easybuild/easyconfigs/g/guile/guile-1.8.8-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..ecd844f29d41cf698f839d10eb9ab1232ddfb307 --- /dev/null +++ b/easybuild/easyconfigs/g/guile/guile-1.8.8-intel-2015b.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'guile' +version = '1.8.8' + +homepage = 'http://www.gnu.org/software/guile' +description = """Guile is the GNU Ubiquitous Intelligent Language for Extensions, + the official extension language for the GNU operating system.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [ + ('libtool', '2.4.6', '', ('GNU', '4.9.3-2.25')), + ('GMP', '6.0.0a'), + ('libunistring', '0.9.3'), + ('pkg-config', '0.27.1'), + ('libffi', '3.0.13'), + ('libreadline', '6.3'), +] + +configopts = " --enable-error-on-warning=no" + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in ["guile", 'guile-config', 'guile-snarf', 'guile-tools']] + + ["lib/libguile.a", "include/libguile.h"], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/g/gzip/gzip-1.6-intel-2015b.eb b/easybuild/easyconfigs/g/gzip/gzip-1.6-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..c1b78eb897bc365f1a4e0e62a9210da4403e5c48 --- /dev/null +++ b/easybuild/easyconfigs/g/gzip/gzip-1.6-intel-2015b.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'gzip' +version = '1.6' + +homepage = 'http://www.gnu.org/software/gzip/' +description = "gzip (GNU zip) is a popular data compression program as a replacement for compress" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +sanity_check_paths = { + 'files': ["bin/gunzip", "bin/gzip", "bin/uncompress"], + 'dirs': [], +} + +sanity_check_commands = [True, ('gzip', '--version')] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HBase/HBase-1.0.2.eb b/easybuild/easyconfigs/h/HBase/HBase-1.0.2.eb index aeb9e7c8b09993a26717028cbcf8c09e9382df56..ab9d5fd44fb20ffb2896ba03057ef693d7164e56 100644 --- a/easybuild/easyconfigs/h/HBase/HBase-1.0.2.eb +++ b/easybuild/easyconfigs/h/HBase/HBase-1.0.2.eb @@ -15,10 +15,10 @@ dependencies = [('Java', '1.7.0_80')] parallel = 1 -sanity_check_paths = { - 'files': ["bin/hbase"], - 'dirs': ["conf", "docs", "hbase-webapps", "lib"] -} +sanity_check_paths = { + 'files': ["bin/hbase"], + 'dirs': ["conf", "docs", "hbase-webapps", "lib"] +} modextravars = {'HBASE_HOME': '%(installdir)s'} diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-4.1.13-gpfs.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-4.1.13-gpfs.eb index 031479c2f3c8f5c71a74b49b8094e5928f6b4953..ec1b30de6932a7fbdbf5e1c33233f58a1bb8056b 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-4.1.13-gpfs.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-ictce-4.1.13-gpfs.eb @@ -19,7 +19,7 @@ patches = [ dependencies = [ ('zlib', '1.2.7'), - ('Szip','2.1'), + ('Szip', '2.1'), ] configopts = "--enable-gpfs" diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-intel-2014b-gpfs.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-intel-2014b-gpfs.eb index 62eff2e443c3115ec6e57ccf84fc236d19690bca..fa45e3d80d2354f7de84154234ef2b8d274052c6 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-intel-2014b-gpfs.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-intel-2014b-gpfs.eb @@ -19,7 +19,7 @@ patches = [ dependencies = [ ('zlib', '1.2.8'), - ('Szip','2.1'), + ('Szip', '2.1'), ] configopts = "--enable-gpfs" diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.5.14.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.5.14.eb index 89abbbefcff3d66c333485ee0bb2d3c134e149dd..c83b2a6347231dfa072ed05d7290c9c4dd52fc31 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.10-patch1-goolf-1.5.14.eb @@ -5,7 +5,7 @@ homepage = 'http://www.hdfgroup.org/HDF5/' description = """HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.""" -toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchain = {'name': 'goolf', 'version': '1.5.14'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..a74b48d6644fc17dada2c5f58818b19be5aab86c --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.13-intel-2015b.eb @@ -0,0 +1,26 @@ +name = 'HDF5' +version = '1.8.13' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5-%(version)s_configure_intel.patch', + 'configure_libtool.patch', +] + +buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' + +dependencies = [ + ('zlib', '1.2.8'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015b.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..8b6038c4eef7e2fe06546170e9c1ea6b467719d3 --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.15-patch1-foss-2015b.eb @@ -0,0 +1,23 @@ +name = 'HDF5' +version = '1.8.15-patch1' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['configure_libtool.patch'] + +buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' + +dependencies = [ + ('zlib', '1.2.8'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2015a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..25e05e8e27ae22d5bdf4835410d7911f97018bdd --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-foss-2015a.eb @@ -0,0 +1,23 @@ +name = 'HDF5' +version = '1.8.16' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['configure_libtool.patch'] + +buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' + +dependencies = [ + ('zlib', '1.2.8'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a-serial.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a-serial.eb new file mode 100644 index 0000000000000000000000000000000000000000..dc2e939bfa51a059afbb7caa5366c9b5bb907c8d --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a-serial.eb @@ -0,0 +1,25 @@ +name = 'HDF5' +version = '1.8.16' +versionsuffix = '-serial' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': False} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5-1.8.15_configure_intel.patch', + 'configure_libtool.patch', +] + +dependencies = [ + ('zlib', '1.2.8'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..dc65dce562edb3031a04588bd4b0c3f4a354404a --- /dev/null +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.16-intel-2016a.eb @@ -0,0 +1,26 @@ +name = 'HDF5' +version = '1.8.16' + +homepage = 'http://www.hdfgroup.org/HDF5/' +description = """HDF5 is a unique technology suite that makes possible the management of + extremely large and complex data collections.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'optarch': True, 'pic': True, 'usempi': True} + +source_urls = ['http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'HDF5-1.8.15_configure_intel.patch', + 'configure_libtool.patch', +] + +buildopts = 'CXXFLAGS="$CXXFLAGS -DMPICH_IGNORE_CXX_SEEK"' + +dependencies = [ + ('zlib', '1.2.8'), + ('Szip', '2.1'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.2.0.eb b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.2.0.eb index 01668228092cc45c17dc45c3a7a5ba3cada9528e..7cd6cdf595c010a08fbf05315e0bc94e352bad16 100644 --- a/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/h/HDF5/HDF5-1.8.9-ictce-5.2.0.eb @@ -18,8 +18,8 @@ patches = [ ] dependencies = [ - ('zlib','1.2.7'), - ('Szip','2.1'), + ('zlib', '1.2.7'), + ('Szip', '2.1'), ] moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb index c29c1cc257be4a19b851286f946db2f1baf28a9f..9bc25a507114b8c75309d4389e804822118361cb 100644 --- a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goalf-1.1.0-no-OFED.eb @@ -28,8 +28,8 @@ skipsteps = ['configure'] installopts = "INSTALL_DIR=%(installdir)s" sanity_check_paths = { - 'files': ["bin/hhalign", "bin/hhblits", "bin/hhconsensus", "bin/hhfilter", "bin/hhmake", "bin/hhsearch"], - 'dirs': [] - } + 'files': ["bin/hhalign", "bin/hhblits", "bin/hhconsensus", "bin/hhfilter", "bin/hhmake", "bin/hhsearch"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb index 6fd5c2e8bfc395919ae72fa9d922aef274f60617..562e5955579d97f4435fd6b8307457ff03a1c1cd 100644 --- a/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HH-suite/HH-suite-2.0.16-goolf-1.4.10.eb @@ -28,8 +28,8 @@ skipsteps = ['configure'] installopts = "INSTALL_DIR=%(installdir)s" sanity_check_paths = { - 'files': ["bin/hhalign", "bin/hhblits", "bin/hhconsensus", "bin/hhfilter", "bin/hhmake", "bin/hhsearch"], - 'dirs': [] - } + 'files': ["bin/hhalign", "bin/hhblits", "bin/hhconsensus", "bin/hhfilter", "bin/hhmake", "bin/hhsearch"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb index 3879fe81ad06dbe531e29b4bf96a315229bcbdb8..9f844f7f8c0b817a5d2427ba6b17da1cc22f5949 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goalf-1.1.0-no-OFED.eb @@ -33,8 +33,8 @@ sources = ['hmmer-%s-linux-intel-x86_64.tar.gz' % version] source_urls = ['http://selab.janelia.org/software/%s/%s/' % (versiondir, version)] sanity_check_paths = { - 'files': ["bin/hmmemit", "bin/hmmsearch", "bin/hmmscan"], - 'dirs': [] - } + 'files': ["bin/hmmemit", "bin/hmmsearch", "bin/hmmscan"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb index 2c24669f8fc5c9b67fc91d198623720d6008dd37..ac2ff916ef27a8d5fe2d372342bcccd7035baabc 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-goolf-1.4.10.eb @@ -32,8 +32,8 @@ sources = ['hmmer-%s-linux-intel-x86_64.tar.gz' % version] source_urls = ['http://selab.janelia.org/software/%s/%s/' % (versiondir, version)] sanity_check_paths = { - 'files': ["bin/hmmemit", "bin/hmmsearch", "bin/hmmscan"], - 'dirs': [] - } + 'files': ["bin/hmmemit", "bin/hmmsearch", "bin/hmmscan"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb index 43301b81dcfae3558e831b904bc97251fbf4359f..4f2f846bc8dee0d57a914f07dc53dc6c1a636f7f 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-4.0.6.eb @@ -33,8 +33,8 @@ sources = ['hmmer-%s-linux-intel-x86_64.tar.gz' % version] source_urls = ['http://selab.janelia.org/software/%s/%s/' % (versiondir, version)] sanity_check_paths = { - 'files': ["bin/hmmemit", "bin/hmmsearch", "bin/hmmscan"], - 'dirs': [] - } + 'files': ["bin/hmmemit", "bin/hmmsearch", "bin/hmmscan"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb index 11e40f315c84681d4fe4818cc28a6d16c2fc9e40..52d15716803d368ab966c8e6b09891388fe31ef7 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.0-ictce-5.3.0.eb @@ -34,8 +34,8 @@ sources = ['hmmer-%s-linux-intel-x86_64.tar.gz' % version] source_urls = ['http://selab.janelia.org/software/%s/%s/' % (versiondir, version)] sanity_check_paths = { - 'files': ["bin/hmmemit", "bin/hmmsearch", "bin/hmmscan"], - 'dirs': [] - } + 'files': ["bin/hmmemit", "bin/hmmsearch", "bin/hmmscan"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb index 35d93e8b65b8611dcb589564e63e925ce6f5579b..7b6ea628da41335a95395e8ce6f5349d6d4860b7 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-goolf-1.4.10.eb @@ -35,7 +35,7 @@ installopts = ' && cd easel && make install' sanity_check_paths = { 'files': ["bin/%s" % x for x in ["hmmemit", "hmmsearch", "hmmscan", - "esl-alimap", "esl-cluster", "esl-mask"]], + "esl-alimap", "esl-cluster", "esl-mask"]], 'dirs': [] } diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb index 6b7248a777fe59c9cdbec725c6fdcd8bdf5139c9..65bc990310d9509ec8279b60ec1ede5e45b58278 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-5.3.0.eb @@ -35,7 +35,7 @@ installopts = ' && cd easel && make install' sanity_check_paths = { 'files': ["bin/%s" % x for x in ["hmmemit", "hmmsearch", "hmmscan", - "esl-alimap", "esl-cluster", "esl-mask"]], + "esl-alimap", "esl-cluster", "esl-mask"]], 'dirs': [] } diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb index b56baf902e770cfe966e1549053e9554f9a5a052..9a8eaafde67a75860f1a7956ca1fdddc76d5867e 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b1-ictce-6.2.5.eb @@ -35,7 +35,7 @@ installopts = ' && cd easel && make install' sanity_check_paths = { 'files': ["bin/%s" % x for x in ["hmmemit", "hmmsearch", "hmmscan", - "esl-alimap", "esl-cluster", "esl-mask"]], + "esl-alimap", "esl-cluster", "esl-mask"]], 'dirs': [] } diff --git a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2015a.eb b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2015a.eb index 5255f85ddcd37709b77b7063e1420b3759793394..36707aa8fe6a15212d908d36948a09704da18975 100644 --- a/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HMMER/HMMER-3.1b2-intel-2015a.eb @@ -34,7 +34,7 @@ installopts = ' && cd easel && make install' sanity_check_paths = { 'files': ["bin/%s" % x for x in ["hmmemit", "hmmsearch", "hmmscan", - "esl-alimap", "esl-cluster", "esl-mask"]], + "esl-alimap", "esl-cluster", "esl-mask"]], 'dirs': [] } diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb index b103b8110ee4e86d6b0825f45fce6739624e8c39..05c50b39b973ccb460ca143de66968375064d8c2 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-goolf-1.4.10.eb @@ -19,7 +19,7 @@ homepage = 'http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html' description = """Bioinformatics & Computational Biology productivity environment includes a set of HPC tools, which are needed for scientific computing and visualization in the respective domain. """ -toolchain = {'name': 'goolf', 'version': '1.4.10'} # ie. build against the GNU compilers & OpenMPI stack +toolchain = {'name': 'goolf', 'version': '1.4.10'} # ie. build against the GNU compilers & OpenMPI stack dependencies = [ ('ALLPATHS-LG', '46968'), @@ -33,7 +33,7 @@ dependencies = [ ('Bowtie2', '2.0.2'), ('bam2fastq', '1.1.0'), ('biodeps', '1.6'), -# ('CD-HIT', '4.5.4', '-2011-03-07'), + # ('CD-HIT', '4.5.4', '-2011-03-07'), ('ClustalW2', '2.1'), ('Cufflinks', '2.0.2'), ('EMBOSS', '6.5.7'), @@ -57,7 +57,7 @@ dependencies = [ ('NEURON', '7.2'), ('Oases', '0.2.08'), ('PAML', '4.7'), -# ('PLINK', '1.07'), + # ('PLINK', '1.07'), ('Pasha', '1.0.3'), ('Primer3', '2.3.0'), ('RAxML', '7.7.5', '-hybrid-sse3'), diff --git a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb index e1d3fd7aa1b0356dd97b50a1d98f317b3922fe3c..a420531caeabaa0c752c7b91d7bc73128d98fc7f 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Bioinfo/HPCBIOS_Bioinfo-20130829-ictce-5.3.0.eb @@ -19,10 +19,10 @@ homepage = 'http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html' description = """Bioinformatics & Computational Biology productivity environment includes a set of HPC tools, which are needed for scientific computing and visualization in the respective domain. """ -toolchain = {'name': 'ictce', 'version': '5.3.0'} # ie. build against the INTEL compilers & MPI stack / March 2013 +toolchain = {'name': 'ictce', 'version': '5.3.0'} # ie. build against the INTEL compilers & MPI stack / March 2013 dependencies = [ -# ('ALLPATHS-LG', '46968'), + # ('ALLPATHS-LG', '46968'), ('AMOS', '3.1.0'), ('BFAST', '0.7.0a'), ('BLAST+', '2.2.28', '-Python-2.7.3'), @@ -43,7 +43,7 @@ dependencies = [ ('GLIMMER', '3.02b'), ('GROMACS', '4.6.1', '-hybrid'), ('HMMER', '3.0'), -# ('HH-suite', '2.0.16'), + # ('HH-suite', '2.0.16'), ('Infernal', '1.1rc1'), ('libgtextutils', '0.6.1'), ('libharu', '2.2.0'), diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb index 3925d6593373142e00c8c96d7106fffe961163ae..ac9bda6d5df60cbb34ad2f5e13c0c0e5405c3ffb 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-goolf-1.4.10.eb @@ -31,7 +31,7 @@ dependencies = [ ('HMMER', '3.0'), ('MrBayes', '3.1.2'), ('mpiBLAST', '1.6.0'), -# ('Rosetta', '3.5'), + # ('Rosetta', '3.5'), ] moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb index fc1b20fc8e7ea913ff324a432680086e0b72b3c4..a4a4c517a0d8e9c63bbfd01c998cb65476fb9782 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_LifeSciences/HPCBIOS_LifeSciences-20130829-ictce-5.3.0.eb @@ -31,7 +31,7 @@ dependencies = [ ('HMMER', '3.0'), ('MrBayes', '3.1.2'), ('mpiBLAST', '1.6.0'), -# ('Rosetta', '3.5'), + # ('Rosetta', '3.5'), ] moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb index b2b1287193dd38e2f262d1adc85113ef5f4fc1bc..53cb50514fe45c529df44c6dbad251c1525acd43 100644 --- a/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/HPCBIOS_Math/HPCBIOS_Math-20130829-ictce-5.3.0.eb @@ -23,9 +23,9 @@ description = """Common Set of Open Source Math Libraries includes a set of HPC toolchain = {'name': 'ictce', 'version': '5.3.0'} dependencies = [ - ('PETSc', '3.3-p2', '-Python-2.7.3'), - ('GSL', '1.15'), - ('SPRNG', '2.0b'), + ('PETSc', '3.3-p2', '-Python-2.7.3'), + ('GSL', '1.15'), + ('SPRNG', '2.0b'), ] moduleclass = 'math' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.1.29.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-2015.06-XC.eb similarity index 91% rename from easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.1.29.eb rename to easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-2015.06-XC.eb index a7abc8534e34afb8081bfa5007baef3af27ba083..845802b50453459a0037378e23af09ca6ad9405d 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.1.29.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-2015.06-XC.eb @@ -6,7 +6,7 @@ description = """HPL is a software package that solves a (random) dense linear s on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.""" -toolchain = {'name': 'CrayCCE', 'version': '5.1.29'} +toolchain = {'name': 'CrayCCE', 'version': '2015.06-XC'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.25.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-2015.11-XC.eb similarity index 91% rename from easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.25.eb rename to easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-2015.11-XC.eb index 109c7ddafc5bc64b7cd9ae15da082863cb2930fe..f4a0256f792ccb59850cab642b040dcce744c346 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.25.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-2015.11-XC.eb @@ -6,7 +6,7 @@ description = """HPL is a software package that solves a (random) dense linear s on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.""" -toolchain = {'name': 'CrayCCE', 'version': '5.2.25'} +toolchain = {'name': 'CrayCCE', 'version': '2015.11-XC'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.40.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.40.eb deleted file mode 100644 index b91a1eb4990f64887a63a6fd07aa9af228ad401c..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayCCE-5.2.40.eb +++ /dev/null @@ -1,22 +0,0 @@ -name = 'HPL' -version = '2.1' - -homepage = 'http://www.netlib.org/benchmark/hpl/' -description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic - on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the - High Performance Computing Linpack Benchmark.""" - -toolchain = {'name': 'CrayCCE', 'version': '5.2.40'} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] - -patches = [ - # fix Make dependencies, so parallel build also works - 'HPL_parallel-make.patch', - 'HPL-2.1_LINKER-ld.patch', -] - -parallel = 1 - -moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.1.29.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-2015.06-XC.eb similarity index 91% rename from easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.1.29.eb rename to easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-2015.06-XC.eb index c8cac688c8e6e2a9df5e1c5bd75dfd2ec190f568..fe0de8812c09e89270bcd9e93f493d9b8d9857a9 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.1.29.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-2015.06-XC.eb @@ -6,7 +6,7 @@ description = """HPL is a software package that solves a (random) dense linear s on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.""" -toolchain = {'name': 'CrayIntel', 'version': '5.1.29'} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} toolchainopts = {'optarch': True, 'usempi': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-2015.11-XC.eb similarity index 91% rename from easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.1.29.eb rename to easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-2015.11-XC.eb index 806d976659065169b36f0fdb31fb8e353981bd83..ecd5998b8d6a52014e0fb7fed6fd9d0e03cae82d 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-2015.11-XC.eb @@ -6,7 +6,7 @@ description = """HPL is a software package that solves a (random) dense linear s on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.""" -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} toolchainopts = {'optarch': True, 'usempi': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-2015.06-XC.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-2015.06-XC.eb new file mode 100644 index 0000000000000000000000000000000000000000..32e943a8d6e9be4c4dad2d6db3c6c23d6857d5ef --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-2015.06-XC.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'CrayIntel', 'version': '2015.06-XC'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-2015.11-XC.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-2015.11-XC.eb new file mode 100644 index 0000000000000000000000000000000000000000..370ce49b4cf7cb051b02d4f1763140117941e9ce --- /dev/null +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-2015.11-XC.eb @@ -0,0 +1,18 @@ +name = 'HPL' +version = '2.1' + +homepage = 'http://www.netlib.org/benchmark/hpl/' +description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic + on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the + High Performance Computing Linpack Benchmark.""" + +toolchain = {'name': 'CrayIntel', 'version': '2015.11-XC'} +toolchainopts = {'optarch': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] + +# fix Make dependencies, so parallel build also works +patches = ['HPL_parallel-make.patch'] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.25.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.25.eb deleted file mode 100644 index 0344d227a57c76d8bdf6e263263d106c3127ec63..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.25.eb +++ /dev/null @@ -1,18 +0,0 @@ -name = 'HPL' -version = '2.1' - -homepage = 'http://www.netlib.org/benchmark/hpl/' -description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic - on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the - High Performance Computing Linpack Benchmark.""" - -toolchain = {'name': 'CrayIntel', 'version': '5.2.25'} -toolchainopts = {'optarch': True, 'usempi': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] - -# fix Make dependencies, so parallel build also works -patches = ['HPL_parallel-make.patch'] - -moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.40.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.40.eb deleted file mode 100644 index 8a33b68ad9dcb2f756de287cb4479082304842d9..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayIntel-5.2.40.eb +++ /dev/null @@ -1,18 +0,0 @@ -name = 'HPL' -version = '2.1' - -homepage = 'http://www.netlib.org/benchmark/hpl/' -description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic - on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the - High Performance Computing Linpack Benchmark.""" - -toolchain = {'name': 'CrayIntel', 'version': '5.2.40'} -toolchainopts = {'optarch': True, 'usempi': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] - -# fix Make dependencies, so parallel build also works -patches = ['HPL_parallel-make.patch'] - -moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2016a.eb similarity index 92% rename from easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.25.eb rename to easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2016a.eb index b4acf0c1bcaf70031d31fe2d2fb00c7d83e08a27..e43e4270ddec3ee1d1dbd17f9618c578aef2610d 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-foss-2016a.eb @@ -6,7 +6,7 @@ description = """HPL is a software package that solves a (random) dense linear s on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchain = {'name': 'foss', 'version': '2016a'} toolchainopts = {'optarch': True, 'usempi': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-gpsolf-2014.12.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-gpsolf-2014.12.eb index 26abf7963c7d3f98b8443b31af1afec3949e1ba6..8b166299eb8f86be5b04bef894b5c60bc1b557a1 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-gpsolf-2014.12.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-gpsolf-2014.12.eb @@ -5,7 +5,7 @@ homepage = 'http://www.netlib.org/benchmark/hpl/' description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.""" -toolchain = {'name': 'gpsolf', 'version': '2014.12'} +toolchain = {'name': 'gpsolf', 'version': '2014.12'} toolchainopts = {'optarch': True, 'usempi': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2016a.eb similarity index 92% rename from easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.40.eb rename to easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2016a.eb index dcfcc5ca6e5847bd5738fc11a2fadc254bf327ce..a3af786ca9b1ffb63b6a7bafdf7fa91941026405 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-CrayGNU-5.2.40.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-2016a.eb @@ -6,7 +6,7 @@ description = """HPL is a software package that solves a (random) dense linear s on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchain = {'name': 'intel', 'version': '2016a'} toolchainopts = {'optarch': True, 'usempi': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-para-2014.12.eb b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-para-2014.12.eb index b56af425fea1870530acec7386bba8aa81403fef..96acd937257084be9791e3c65ac63861d1f15959 100644 --- a/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-para-2014.12.eb +++ b/easybuild/easyconfigs/h/HPL/HPL-2.1-intel-para-2014.12.eb @@ -5,7 +5,7 @@ homepage = 'http://www.netlib.org/benchmark/hpl/' description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.""" -toolchain = {'name': 'intel-para', 'version': '2014.12'} +toolchain = {'name': 'intel-para', 'version': '2014.12'} toolchainopts = {'optarch': True, 'usempi': True} sources = [SOURCELOWER_TAR_GZ] @@ -15,4 +15,3 @@ source_urls = ['http://www.netlib.org/benchmark/%(namelower)s'] patches = ['HPL_parallel-make.patch'] moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/h/HTSeq/HTSeq-0.6.1p1-foss-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.6.1p1-foss-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..84e43a6849626458d771e6e850147a34e9485208 --- /dev/null +++ b/easybuild/easyconfigs/h/HTSeq/HTSeq-0.6.1p1-foss-2015b-Python-2.7.10.eb @@ -0,0 +1,32 @@ +easyblock = "PythonPackage" + +name = 'HTSeq' +version = '0.6.1p1' + +homepage = 'http://www-huber.embl.de/users/anders/HTSeq/' +description = """A framework to process and analyze data from high-throughput sequencing (HTS) assays""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonver = '2.7.10' +pyshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) +eggname = '%%(name)s-%%(version)s-py%s-linux-x86_64.egg' % pyshortver + +dependencies = [ + (python, pythonver), + ('matplotlib', '1.5.1', versionsuffix), +] + +sanity_check_paths = { + 'files': ["bin/htseq-count", "bin/htseq-qa"], + 'dirs': ["lib/python%s/site-packages/%s" % (pyshortver, eggname)], +} + +options = {'modulename': '%(name)s'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb index 93dfcd4cac2fa659f57632f554352a104177403f..2f2abef4e6730210c5180cb11d88aadb90dd0e49 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.1-goolf-1.4.10.eb @@ -3,14 +3,14 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -easyblock = 'ConfigureMake' +easyblock = 'ConfigureMake' name = 'HTSlib' version = '1.1' homepage = 'http://www.htslib.org/' -description = """ A C library for reading/writing high-throughput sequencing data. - This package includes the utilities bgzip and tabix """ +description = """A C library for reading/writing high-throughput sequencing data. + This package includes the utilities bgzip and tabix""" toolchain = {'name': 'goolf', 'version': '1.4.10'} @@ -26,7 +26,7 @@ skipsteps = ['configure'] installopts = ' prefix=%(installdir)s' sanity_check_paths = { - 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.so"], + 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.%s" % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-foss-2015a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-foss-2015a.eb index 000a05482bd524282521b799d49dfaf53379b100..36facf37a3ef9b2c65348ee18dde0f7af6878cde 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-foss-2015a.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-foss-2015a.eb @@ -9,8 +9,8 @@ name = 'HTSlib' version = '1.2.1' homepage = "http://www.htslib.org/" -description = """ A C library for reading/writing high-throughput sequencing data. - This package includes the utilities bgzip and tabix """ +description = """A C library for reading/writing high-throughput sequencing data. + This package includes the utilities bgzip and tabix""" toolchain = {'name': 'foss', 'version': '2015a'} @@ -20,7 +20,7 @@ sources = [SOURCELOWER_TAR_BZ2] dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.so"], + 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.%s" % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-goolf-1.7.20.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-goolf-1.7.20.eb index b266c4f0a2a0aca044bbe73e30dd31515a9f5632..7f25a2acfbdbdb35e19dce92a5250eefa82df132 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-goolf-1.7.20.eb @@ -11,8 +11,8 @@ name = 'HTSlib' version = '1.2.1' homepage = "http://www.htslib.org/" -description = """ A C library for reading/writing high-throughput sequencing data. - This package includes the utilities bgzip and tabix """ +description = """A C library for reading/writing high-throughput sequencing data. + This package includes the utilities bgzip and tabix""" toolchain = {'name': 'goolf', 'version': '1.7.20'} @@ -22,7 +22,7 @@ sources = [SOURCELOWER_TAR_BZ2] dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.so"], + 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.%s" % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb index 3963d9e53913585e17e33c234062242636de3a2d..258f48d92ee736ca140bfea003d76557916b5220 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015a.eb @@ -9,8 +9,8 @@ name = 'HTSlib' version = '1.2.1' homepage = "http://www.htslib.org/" -description = """ A C library for reading/writing high-throughput sequencing data. - This package includes the utilities bgzip and tabix """ +description = """A C library for reading/writing high-throughput sequencing data. + This package includes the utilities bgzip and tabix""" toolchain = {'name': 'intel', 'version': '2015a'} @@ -20,7 +20,7 @@ sources = [SOURCELOWER_TAR_BZ2] dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.so"], + 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.%s" % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015b.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015b.eb index 465b0a7d53d7e7213cff80e758080e7de1f6444f..8c0f7d5ac6f056394b9053626ab410b7fc1ac82a 100644 --- a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015b.eb +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.2.1-intel-2015b.eb @@ -9,8 +9,8 @@ name = 'HTSlib' version = '1.2.1' homepage = "http://www.htslib.org/" -description = """ A C library for reading/writing high-throughput sequencing data. - This package includes the utilities bgzip and tabix """ +description = """A C library for reading/writing high-throughput sequencing data. + This package includes the utilities bgzip and tabix""" toolchain = {'name': 'intel', 'version': '2015b'} @@ -20,7 +20,7 @@ sources = [SOURCELOWER_TAR_BZ2] dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.so"], + 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.%s" % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-intel-2016a.eb b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..7b22333e99d996afb643dd7358c076ef67ce7b08 --- /dev/null +++ b/easybuild/easyconfigs/h/HTSlib/HTSlib-1.3-intel-2016a.eb @@ -0,0 +1,27 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'ConfigureMake' + +name = 'HTSlib' +version = '1.3' + +homepage = "http://www.htslib.org/" +description = """A C library for reading/writing high-throughput sequencing data. + This package includes the utilities bgzip and tabix""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s/'] +sources = [SOURCELOWER_TAR_BZ2] + +dependencies = [('zlib', '1.2.8')] + +sanity_check_paths = { + 'files': ["bin/bgzip", "bin/tabix", "lib/libhts.%s" % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb index ba609bc0fdba65c496d6deae0d5e944f6c127c16..473cec461ab62c9d121d9dfcfa52f35142e7976e 100644 --- a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb +++ b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.35-intel-2014b.eb @@ -12,8 +12,8 @@ source_urls = ['http://www.freedesktop.org/software/harfbuzz/release/'] sources = [SOURCELOWER_TAR_BZ2] dependencies = [ - ('cairo', '1.12.18'), - ('GObject-Introspection', '1.42.0'), + ('cairo', '1.12.18'), + ('GObject-Introspection', '1.42.0'), ] patches = ['HarfBuzz-%(version)s_config.patch'] @@ -21,7 +21,7 @@ patches = ['HarfBuzz-%(version)s_config.patch'] configopts = '--with-gobject --enable-introspection=yes ' sanity_check_paths = { - 'files': ['lib/libharfbuzz.so', 'bin/hb-view'], + 'files': ['lib/libharfbuzz.%s' % SHLIB_EXT, 'bin/hb-view'], 'dirs': [] } diff --git a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.41-intel-2015a.eb b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.41-intel-2015a.eb index 30ed702ef86d44117360b5f12f6125071e4e9670..aa9159ceb503e8b5d94cd83cc2692882ffcc73a8 100644 --- a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.41-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.41-intel-2015a.eb @@ -18,9 +18,9 @@ dependencies = [ ('GLib', '2.41.2'), ] -sanity_check_paths = { - 'files': ["lib/libharfbuzz.so"], - 'dirs': [""], +sanity_check_paths = { + 'files': ['lib/libharfbuzz.%s' % SHLIB_EXT], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.41-intel-2015b.eb b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.41-intel-2015b.eb index f814340bb54dd6d9d0952d9ef4584b27ab6a2cb0..82ca87f89c920965b7d45c1051ea404001d3a7e4 100644 --- a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.41-intel-2015b.eb +++ b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-0.9.41-intel-2015b.eb @@ -18,9 +18,9 @@ dependencies = [ ('GLib', '2.41.2'), ] -sanity_check_paths = { - 'files': ["lib/libharfbuzz.so"], - 'dirs': [""], +sanity_check_paths = { + 'files': ['lib/libharfbuzz.%s' % SHLIB_EXT], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.0.1-intel-2015a.eb b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.0.1-intel-2015a.eb index d96b54ef9349e23496e8739ddc6cad9ac3def7d0..8537af8ca5cf98bb96e012279b708718bffe66ec 100644 --- a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.0.1-intel-2015a.eb +++ b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.0.1-intel-2015a.eb @@ -12,14 +12,14 @@ source_urls = ['http://www.freedesktop.org/software/harfbuzz/release/'] sources = [SOURCELOWER_TAR_BZ2] dependencies = [ - ('cairo', '1.14.2'), - ('GObject-Introspection', '1.44.0'), + ('cairo', '1.14.2'), + ('GObject-Introspection', '1.44.0'), ] configopts = '--with-gobject --enable-introspection=yes ' sanity_check_paths = { - 'files': ['lib/libharfbuzz.so', 'bin/hb-view'], + 'files': ['lib/libharfbuzz.%s' % SHLIB_EXT, 'bin/hb-view'], 'dirs': [] } diff --git a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.1.0-intel-2015b.eb b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.1.0-intel-2015b.eb index 9ed292cff80f05415286b9e8dd8547b7aedaf9a3..4669cfc27fb9790f67457a4258804d97a2f1036f 100644 --- a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.1.0-intel-2015b.eb +++ b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.1.0-intel-2015b.eb @@ -12,14 +12,14 @@ source_urls = ['http://www.freedesktop.org/software/harfbuzz/release/'] sources = [SOURCELOWER_TAR_BZ2] dependencies = [ - ('cairo', '1.14.4'), - ('GObject-Introspection', '1.47.1'), + ('cairo', '1.14.4'), + ('GObject-Introspection', '1.47.1'), ] configopts = '--with-gobject --enable-introspection=yes ' sanity_check_paths = { - 'files': ['lib/libharfbuzz.so', 'bin/hb-view'], + 'files': ['lib/libharfbuzz.%s' % SHLIB_EXT, 'bin/hb-view'], 'dirs': [] } diff --git a/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.1.3-intel-2016a.eb b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.1.3-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..050ccb78582b68da1600c975effd2ef2ca17e806 --- /dev/null +++ b/easybuild/easyconfigs/h/HarfBuzz/HarfBuzz-1.1.3-intel-2016a.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'HarfBuzz' +version = '1.1.3' + +homepage = 'http://www.freedesktop.org/wiki/Software/HarfBuzz' +description = """HarfBuzz is an OpenType text shaping engine.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['http://www.freedesktop.org/software/harfbuzz/release/'] +sources = [SOURCELOWER_TAR_BZ2] + +glibver = '2.47.5' +dependencies = [ + ('GLib', glibver), + ('cairo', '1.14.6'), + ('freetype', '2.6.2'), + ('GObject-Introspection', '1.47.1') +] + +configopts = "--enable-introspection=yes --with-gobject=yes --enable-static --enable-shared --with-cairo " + +modextrapaths = { + 'GI_TYPELIB_PATH': 'share', + 'XDG_DATA_DIRS': 'share', +} + +sanity_check_paths = { + 'files': ['lib/libharfbuzz.%s' % SHLIB_EXT, 'bin/hb-view'], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb b/easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb index 229cf3a9baaee4c576b999160dd62d1b392f49bd..80e0503ba7c1e8356b383b5cfb5341acada999e6 100644 --- a/easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb +++ b/easybuild/easyconfigs/h/Hoard/Hoard-3.10-intel-2015a.eb @@ -17,13 +17,13 @@ start_dir = 'src' buildopts = 'linux-gcc-x86-64' -files_to_copy = [(['libhoard.so'], 'lib')] +files_to_copy = [(['libhoard.%s' % SHLIB_EXT], 'lib')] sanity_check_paths = { - 'files': ['lib/libhoard.so'], + 'files': ['lib/libhoard.%s' % SHLIB_EXT], 'dirs': [], } -modextrapaths = {'LD_PRELOAD': ['lib/libhoard.so']} +modextrapaths = {'LD_PRELOAD': ['lib/libhoard.%s' % SHLIB_EXT]} moduleclass = 'lib' diff --git a/easybuild/easyconfigs/h/Hypre/Hypre-2.8.0b-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/Hypre/Hypre-2.8.0b-goalf-1.1.0-no-OFED.eb index 964e73f35c3d38fbc63ca2160acb35645d44af55..8348598dca6ce17646f1e1cd245dc8d0e0913ad6 100644 --- a/easybuild/easyconfigs/h/Hypre/Hypre-2.8.0b-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/Hypre/Hypre-2.8.0b-goalf-1.1.0-no-OFED.eb @@ -15,8 +15,8 @@ sources = [SOURCELOWER_TAR_GZ] start_dir = "src" sanity_check_paths = { - 'files': ['lib/libHYPRE.a'], - 'dirs': ['include'] - } + 'files': ['lib/libHYPRE.a'], + 'dirs': ['include'] +} moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/h/Hypre/Hypre-2.8.0b-goolf-1.4.10.eb b/easybuild/easyconfigs/h/Hypre/Hypre-2.8.0b-goolf-1.4.10.eb index 57e599416bf75f22f7f93007e823bfb375ce3881..8022f1e636d6567bc823d769ca82b29ddf332a4d 100644 --- a/easybuild/easyconfigs/h/Hypre/Hypre-2.8.0b-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/Hypre/Hypre-2.8.0b-goolf-1.4.10.eb @@ -14,8 +14,8 @@ sources = [SOURCELOWER_TAR_GZ] start_dir = "src" sanity_check_paths = { - 'files': ['lib/libHYPRE.a'], - 'dirs': ['include'] - } + 'files': ['lib/libHYPRE.a'], + 'dirs': ['include'] +} moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/h/Hypre/Hypre-2.8.0b-ictce-4.0.6.eb b/easybuild/easyconfigs/h/Hypre/Hypre-2.8.0b-ictce-4.0.6.eb index 1e62113c7c8ebf6bd8b90db86ce5d5ad6ff5a355..4d7372a276e9ba33731f1b4055b3731388002bc2 100644 --- a/easybuild/easyconfigs/h/Hypre/Hypre-2.8.0b-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/h/Hypre/Hypre-2.8.0b-ictce-4.0.6.eb @@ -15,8 +15,8 @@ sources = [SOURCELOWER_TAR_GZ] start_dir = "src" sanity_check_paths = { - 'files': ['lib/libHYPRE.a'], - 'dirs': ['include'] - } + 'files': ['lib/libHYPRE.a'], + 'dirs': ['include'] +} moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/h/Hypre/Hypre-2.8.0b-ictce-5.3.0.eb b/easybuild/easyconfigs/h/Hypre/Hypre-2.8.0b-ictce-5.3.0.eb index c7c83dd59eb46d83c188aa24ff68861bd1a7dc2d..a01d7fbee86abe4e22a80acbb4eb88892ee53178 100644 --- a/easybuild/easyconfigs/h/Hypre/Hypre-2.8.0b-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/Hypre/Hypre-2.8.0b-ictce-5.3.0.eb @@ -16,8 +16,8 @@ sources = [SOURCELOWER_TAR_GZ] start_dir = "src" sanity_check_paths = { - 'files': ['lib/libHYPRE.a'], - 'dirs': ['include'] - } + 'files': ['lib/libHYPRE.a'], + 'dirs': ['include'] +} moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.2.1-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-goolf-1.4.10-Python-2.7.3.eb index 9852693c1580b5bcca42c37d7cee17cdd71eb5ce..c9f750bf701fa7a6c0a9e089bac71d38bf29b996 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.2.1-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-goolf-1.4.10-Python-2.7.3.eb @@ -26,7 +26,7 @@ dependencies = [ (python, pythonver), ('HDF5', '1.8.12', '-zlib-1.2.7'), ('mpi4py', '1.3', versionsuffix), # required for MPI support - ('Cython', '0.19.1', versionsuffix), # required to build h5py with MPI support + ('Cython', '0.19.1', versionsuffix), # required to build h5py with MPI support ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-4.1.13-Python-2.7.3.eb index 7f4bdd782b9df3a9aa303f2b97efb61e3c3c7935..eb868b185c4586ac381b576191f6d3ef2f11022b 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.2.1-ictce-4.1.13-Python-2.7.3.eb @@ -26,7 +26,7 @@ dependencies = [ (python, pythonver), ('HDF5', '1.8.12', '-zlib-1.2.7'), ('mpi4py', '1.3', versionsuffix), # required for MPI support - ('Cython', '0.19.1', versionsuffix), # required to build h5py with MPI support + ('Cython', '0.19.1', versionsuffix), # required to build h5py with MPI support ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015a-Python-2.7.9.eb index 41181b753b862cabffe2dfbb31616f77a2cfeb4a..4bd7c5cc0eaaeb1fbe1f02064bf1764228e7269b 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015a-Python-2.7.9.eb @@ -25,6 +25,7 @@ prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' dependencies = [ (python, pyver), ('HDF5', '1.8.14'), + ('pkgconfig', '1.1.0', '-Python-%(pyver)s'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015b-Python-2.7.10-HDF5-1.8.15-patch1-serial.eb b/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015b-Python-2.7.10-HDF5-1.8.15-patch1-serial.eb index 8cfa9b21c9334a707585a8ec2e4924d7621fe386..f070e8c2260357de11cfbdabe63ef51e5e89f9c6 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015b-Python-2.7.10-HDF5-1.8.15-patch1-serial.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015b-Python-2.7.10-HDF5-1.8.15-patch1-serial.eb @@ -22,6 +22,7 @@ versionsuffix = '-Python-%s-HDF5-%s-serial' % (pyver, hdf5ver) dependencies = [ ('Python', pyver), ('HDF5', hdf5ver), + ('pkgconfig', '1.1.0', '-Python-%(pyver)s'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015b-Python-2.7.10-HDF5-1.8.15-patch1.eb b/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015b-Python-2.7.10-HDF5-1.8.15-patch1.eb index d9106c2244978870521f148d089628445a1f95a0..bb6d007d2c7d099319ac40c403e10d95c9a87d3e 100644 --- a/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015b-Python-2.7.10-HDF5-1.8.15-patch1.eb +++ b/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015b-Python-2.7.10-HDF5-1.8.15-patch1.eb @@ -25,6 +25,7 @@ prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' dependencies = [ ('Python', pyver), ('HDF5', hdf5ver), + ('pkgconfig', '1.1.0', '-Python-%(pyver)s'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015b-Python-2.7.11-HDF5-1.8.16.eb b/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015b-Python-2.7.11-HDF5-1.8.16.eb new file mode 100644 index 0000000000000000000000000000000000000000..eb3653329e84e2a831b13199e75131c0698ab8f0 --- /dev/null +++ b/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2015b-Python-2.7.11-HDF5-1.8.16.eb @@ -0,0 +1,34 @@ +easyblock = "PythonPackage" + +name = 'h5py' +version = '2.5.0' + +homepage = 'http://www.h5py.org/' +description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, + version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous + amounts of data.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +hdf5ver = '1.8.16' +versionsuffix = '-Python-%%(pyver)s-HDF5-%s' % hdf5ver + +# to really use mpi enabled hdf5 we now seem to need a configure step +prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' + +dependencies = [ + ('Python', '2.7.11'), + ('HDF5', hdf5ver), + ('pkgconfig', '1.1.0', '-Python-%(pyver)s'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2016a-Python-2.7.11-HDF5-1.8.16.eb b/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2016a-Python-2.7.11-HDF5-1.8.16.eb new file mode 100644 index 0000000000000000000000000000000000000000..40b2a15fa2d79579f7a6b5715d454a50ccbbf1dd --- /dev/null +++ b/easybuild/easyconfigs/h/h5py/h5py-2.5.0-intel-2016a-Python-2.7.11-HDF5-1.8.16.eb @@ -0,0 +1,34 @@ +easyblock = "PythonPackage" + +name = 'h5py' +version = '2.5.0' + +homepage = 'http://www.h5py.org/' +description = """HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, + version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous + amounts of data.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +hdf5ver = '1.8.16' +versionsuffix = '-Python-%%(pyver)s-HDF5-%s' % hdf5ver + +# to really use mpi enabled hdf5 we now seem to need a configure step +prebuildopts = ' python setup.py configure --mpi --hdf5=$EBROOTHDF5 && ' + +dependencies = [ + ('Python', '2.7.11'), + ('HDF5', hdf5ver), + ('pkgconfig', '1.1.0', '-Python-%(pyver)s'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goalf-1.1.0-no-OFED.eb index c8bbf3c141ce322fc4afd23c07c16bb09e709162..a9fe70521e38038fe8f3e3f0478deb68a619a8e6 100644 --- a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goalf-1.1.0-no-OFED.eb @@ -18,11 +18,11 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'usempi': True} dependencies = [ - ('zlib', '1.2.7'), - ('libpng', '1.5.11'), - ('libmatheval', '1.1.8'), - ('HDF5', '1.8.7'), - ] + ('zlib', '1.2.7'), + ('libpng', '1.5.11'), + ('libmatheval', '1.1.8'), + ('HDF5', '1.8.7'), +] sanity_check_paths = { diff --git a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goolf-1.4.10.eb b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goolf-1.4.10.eb index 2c3932e7b7e9860908d2b2199c233fe356149b1f..2efbe0acabd470b26af0e7db9aced31f25ed6f76 100644 --- a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-goolf-1.4.10.eb @@ -16,11 +16,11 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'usempi': True} dependencies = [ - ('zlib', '1.2.7'), - ('libpng', '1.5.11'), - ('libmatheval', '1.1.8'), - ('HDF5', '1.8.7'), - ] + ('zlib', '1.2.7'), + ('libpng', '1.5.11'), + ('libmatheval', '1.1.8'), + ('HDF5', '1.8.7'), +] sanity_check_paths = { diff --git a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-4.0.6.eb b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-4.0.6.eb index ed7d1cacaa3e1de5ca1c6f85aba0920b354ad377..a75aef9437d7db14ad124315e374ff4d5e2fcbac 100644 --- a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-4.0.6.eb @@ -17,11 +17,11 @@ toolchain = {'name': 'ictce', 'version': '4.0.6'} toolchainopts = {'usempi': True} dependencies = [ - ('zlib', '1.2.7'), - ('libpng', '1.5.11'), - ('libmatheval', '1.1.8'), - ('HDF5', '1.8.7'), - ] + ('zlib', '1.2.7'), + ('libpng', '1.5.11'), + ('libmatheval', '1.1.8'), + ('HDF5', '1.8.7'), +] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['h5fromtxt', 'h5math', 'h5topng', 'h5totxt', 'h5tovtk']], diff --git a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-5.3.0.eb b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-5.3.0.eb index 975690f50fde970d48d2f5fadcfa069d31bc7a6f..09424f6b1b6c5faa243e38c8292a11c17e900f9f 100644 --- a/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/h5utils/h5utils-1.12.1-ictce-5.3.0.eb @@ -18,11 +18,11 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'usempi': True} dependencies = [ - ('zlib', '1.2.7'), - ('libpng', '1.5.11'), - ('libmatheval', '1.1.8'), - ('HDF5', '1.8.7'), - ] + ('zlib', '1.2.7'), + ('libpng', '1.5.11'), + ('libmatheval', '1.1.8'), + ('HDF5', '1.8.7'), +] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['h5fromtxt', 'h5math', 'h5topng', 'h5totxt', 'h5tovtk']], diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.1-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.1-intel-2015a-Python-2.7.9.eb index 241e630c3511382a15e91c6a4591d50c9f813062..9272f98ff5844cc20f84e07fb940380ea9ed819c 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.1-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.1-intel-2015a-Python-2.7.9.eb @@ -19,7 +19,7 @@ pythonver = '2.7.9' pythonshortver = '.'.join(pythonver.split('.')[:2]) versionsuffix = '-%s-%s' % (python, pythonver) -# a Python version with mpi4py and pbs_python (vsc.fancylogger) is required at runtime +# a Python version with mpi4py and pbs_python (vsc.utils.fancylogger) is required at runtime dependencies = [ (python, pythonver), ('pbs_python', '4.6.0', versionsuffix), diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.2-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.2-intel-2015a-Python-2.7.9.eb index f6063d9ec35a143e9b23bae2bc733ae1d1949d8f..a096633f0b1e4bc3555054d39894800d1ac002c4 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.2-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.2-intel-2015a-Python-2.7.9.eb @@ -19,7 +19,7 @@ pythonver = '2.7.9' pythonshortver = '.'.join(pythonver.split('.')[:2]) versionsuffix = '-%s-%s' % (python, pythonver) -# a Python version with mpi4py and pbs_python (vsc.fancylogger) is required at runtime +# a Python version with mpi4py and pbs_python (vsc.utils.fancylogger) is required at runtime dependencies = [ (python, pythonver), ('pbs_python', '4.6.0', versionsuffix), diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.3-intel-2015a-Python-2.7.9.eb index 9182229d2c9e1f13e0d42aaf6cd73d6df89c6bc2..c0a03ce83e57dc6b32c09fc19107d0230bb1f7a3 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.3-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.3-intel-2015a-Python-2.7.9.eb @@ -19,7 +19,7 @@ pythonver = '2.7.9' pythonshortver = '.'.join(pythonver.split('.')[:2]) versionsuffix = '-%s-%s' % (python, pythonver) -# a Python version with mpi4py and pbs_python (vsc.fancylogger) is required at runtime +# a Python version with mpi4py and pbs_python (vsc.utils.fancylogger) is required at runtime dependencies = [ (python, pythonver), ('pbs_python', '4.6.0', versionsuffix), diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.4-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.4-intel-2015a-Python-2.7.9.eb index 73433b308159d427ef171befba8b28610014dbe4..b6761f74452293996a6bed9c1c0af68e7cb20399 100644 --- a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.4-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-2.2.4-intel-2015a-Python-2.7.9.eb @@ -19,7 +19,7 @@ pythonver = '2.7.9' pythonshortver = '.'.join(pythonver.split('.')[:2]) versionsuffix = '-%s-%s' % (python, pythonver) -# a Python version with mpi4py and pbs_python (vsc.fancylogger) is required at runtime +# a Python version with mpi4py and pbs_python (vsc.utils.fancylogger) is required at runtime dependencies = [ (python, pythonver), ('pbs_python', '4.6.0', versionsuffix), diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.4-cli.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.4-cli.eb new file mode 100644 index 0000000000000000000000000000000000000000..754319d620b8688bcbe1fd8e7b4068a73624ecff --- /dev/null +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.4-cli.eb @@ -0,0 +1,42 @@ +easyblock = 'PythonPackage' + +name = 'hanythingondemand' +version = '3.0.4' +versionsuffix = '-cli' + +homepage = 'https://github.com/hpcugent/hanythingondemand' +description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +It uses the Torque resource manager to do node allocation.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +# minimal version for interactive use: just uses system Python (netaddr/netifaces/mpi4py not required) +dependencies = [ + ('pbs_python', '4.6.0'), + ('vsc-base', '2.4.2'), +] + +use_easy_install = True +zipped_egg = True + +# use 'hod' rather than 'hanythingondemand' in module name +modaltsoftname = 'hod' + +options = {'modulename': 'hod'} + +modextravars = { + # site-specific settings, hence commented out + # specify HOD module to use in jobs (*full* HOD installation, not a minimal one) + #'HOD_BATCH_HOD_MODULE': 'hanythingondemand/%(version)s-intel-2015b-Python-2.7.10', + #'HOD_CREATE_HOD_MODULE': 'hanythingondemand/%(version)s-intel-2015b-Python-2.7.10', + # specify location on shared 'scratch' filesystem for HOD working directories + #'HOD_BATCH_WORKDIR': '\$VSC_SCRATCH/hod', + #'HOD_CREATE_WORKDIR': '\$VSC_SCRATCH/hod', +} + +sanity_check_commands = [('hod', '--help'), ('hod', 'dists')] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.4-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.4-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..a9eb0b66e93d0e6fde9b46a5f5799c37c2124dd3 --- /dev/null +++ b/easybuild/easyconfigs/h/hanythingondemand/hanythingondemand-3.0.4-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,35 @@ +easyblock = 'PythonPackage' + +name = 'hanythingondemand' +version = '3.0.4' + +homepage = 'https://github.com/hpcugent/hanythingondemand' +description = """HanythingOnDemand (HOD) is a system for provisioning virtual Hadoop clusters over a large physical cluster. +It uses the Torque resource manager to do node allocation.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pythonver = '2.7.10' +pythonshortver = '.'.join(pythonver.split('.')[:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +# a Python version with netaddr/netifaces/mpi4py + pbs_python and vsc-base/vsc-mympirun is required at runtime +dependencies = [ + (python, pythonver), # provides netaddr, netifaces, mpi4py + ('pbs_python', '4.6.0', versionsuffix), + ('vsc-mympirun', '3.4.2', versionsuffix + '-vsc-base-2.4.2'), + ('setuptools', '1.4.2', '', True), +] + +use_easy_install = True +zipped_egg = True + +options = {'modulename': 'hod'} + +sanity_check_commands = [('hod', '--help'), ('hod', 'dists')] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/hisat/hisat-0.1.5-beta-goolf-1.7.20.eb b/easybuild/easyconfigs/h/hisat/hisat-0.1.5-beta-goolf-1.7.20.eb index bd8c70bf67223e9464b03585ce21bfc46b274acd..bece15fbe37e5fae55bd11916c37fc4dd17900b0 100644 --- a/easybuild/easyconfigs/h/hisat/hisat-0.1.5-beta-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/h/hisat/hisat-0.1.5-beta-goolf-1.7.20.eb @@ -19,7 +19,7 @@ source_urls = ['http://ccb.jhu.edu/software/hisat/downloads/'] checksums = ['9524a0170d85c5b560b51e0087f4cf46'] -executables = [name, 'hisat-build', 'hisat-inspect', 'hisat-build-s', 'hisat-inspect-s', 'hisat-align-s', +executables = [name, 'hisat-build', 'hisat-inspect', 'hisat-build-s', 'hisat-inspect-s', 'hisat-align-s', 'hisat-build-l', 'hisat-inspect-l', 'hisat-align-l'] files_to_copy = [(executables, 'bin')] diff --git a/easybuild/easyconfigs/h/horton/horton-2.0.0-intel-2015b-Python-2.7.10-HDF5-1.8.15-patch1-serial.eb b/easybuild/easyconfigs/h/horton/horton-2.0.0-intel-2015b-Python-2.7.10-HDF5-1.8.15-patch1-serial.eb new file mode 100644 index 0000000000000000000000000000000000000000..ab045435b2d788e53e24fafa580d5cc816d9b00a --- /dev/null +++ b/easybuild/easyconfigs/h/horton/horton-2.0.0-intel-2015b-Python-2.7.10-HDF5-1.8.15-patch1-serial.eb @@ -0,0 +1,53 @@ +easyblock = 'PythonPackage' + +name = 'horton' +version = '2.0.0' + +homepage = 'http://theochem.github.io/horton' +description = """HORTON is a Helpful Open-source Research TOol for N-fermion systems, written + primarily in the Python programming language. (HORTON is named after the helpful + pachyderm, not the Canadian caffeine supply store.) The ultimate goal of HORTON + is to provide a platform for testing new ideas on the quantum many-body problem + at a reasonable computational cost. Although HORTON is primarily designed to be + a quantum-chemistry program, it can perform computations involving model + Hamiltonians, and could be extended for computations in nuclear physics.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['https://github.com/theochem/horton/releases/download/%s' % version] +sources = [SOURCE_TAR_GZ] + +pyver = '2.7.10' +hdf5ver = '1.8.15-patch1' +versionsuffix = '-Python-%s-HDF5-%s-serial' % (pyver, hdf5ver) + +dependencies = [ + ('Python', pyver), + ('h5py', '2.5.0', versionsuffix), + ('matplotlib', '1.4.3', '-Python-%s' % pyver), + ('sympy', '0.7.6.1', '-Python-%s' % pyver), + ('Libint', '2.0.3'), + ('libxc', '2.2.2'), +] + +prebuildopts = ' '.join([ + 'BLAS_EXTRA_COMPILE_ARGS=-DMKL_ILP64:-I${MKLROOT}/include', + 'BLAS_LIBRARY_DIRS=${MKLROOT}/lib/intel64', + 'BLAS_LIBRARIES=mkl_intel_ilp64:mkl_core:mkl_sequential:pthread:m:mkl_def', +]) + +# Avoid need for X11 in tests by specifying "backend: agg" in matplotlibrc +runtest = ' '.join([ + 'export MATPLOTLIBRC=$PWD;', + 'echo "backend: agg" > $MATPLOTLIBRC/matplotlibrc;', + '%s python setup.py build_ext -i; ' % prebuildopts, + 'nosetests -v', +]) + +pyshortver = '.'.join(pyver.split('.')[:2]) +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/horton' % pyshortver], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/h/htop/htop-2.0.0.eb b/easybuild/easyconfigs/h/htop/htop-2.0.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..cadc02fadc298e9991d9d132795fd3e2b5f8694f --- /dev/null +++ b/easybuild/easyconfigs/h/htop/htop-2.0.0.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'htop' +version = '2.0.0' + +homepage = 'http://hisham.hm/htop/' +description = """An interactive process viewer for Unix""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['http://hisham.hm/htop/releases/%(version)s/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [('ncurses', '6.0')] + +sanity_check_paths = { + 'files': ['bin/htop'], + 'dirs': ['share'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/hub/hub-2.2.2-linux-amd64.eb b/easybuild/easyconfigs/h/hub/hub-2.2.2-linux-amd64.eb new file mode 100644 index 0000000000000000000000000000000000000000..b96b5278710421da4042862bedae243e2248eef6 --- /dev/null +++ b/easybuild/easyconfigs/h/hub/hub-2.2.2-linux-amd64.eb @@ -0,0 +1,22 @@ +easyblock = 'PackedBinary' + +name = 'hub' +version = '2.2.2' +versionsuffix = '-linux-amd64' + +homepage = 'https://hub.github.com/' +description = """hub is a command-line wrapper for git that makes you better at GitHub.""" + +source_urls = ['https://github.com/github/hub/releases/download/v%(version)s/'] +sources = ['%(namelower)s%(versionsuffix)s-%(version)s.tgz'] + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +postinstallcmds = ['chmod -x %(installdir)s/install'] + +sanity_check_paths = { + 'files': ['bin/hub'], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.9.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.9.2.eb index f86d5d11abd0a82d2b52d52b4dc0f689ca1240cb..24816732939841a25717f291461d908009b267ac 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-GCC-4.9.2.eb @@ -16,7 +16,7 @@ toolchain = {'name': 'GCC', 'version': '4.9.2'} dependencies = [('numactl', '2.0.10')] configopts = "--enable-libnuma=$EBROOTNUMACTL" - + source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.1.133-GCC-4.9.2.eb index 6adec23e7104d57098d8b5e48ca9b961af8da3d6..3ecf13cb7d26ee7a46bcbccc59f68b97232356d9 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.1.133-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.1.133-GCC-4.9.2.eb @@ -17,4 +17,3 @@ source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/ sources = [SOURCE_TAR_GZ] moduleclass = 'system' - diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.2.164-GCC-4.9.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.2.164-GCC-4.9.2.eb index 6a875c1d323b57fa49a66b1698c9ab169f83e8d0..c0454d96329c395a280bd032ee65c63bfe813c76 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.2.164-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.0-iccifort-2015.2.164-GCC-4.9.2.eb @@ -17,4 +17,3 @@ source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/ sources = [SOURCE_TAR_GZ] moduleclass = 'system' - diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GCC-4.8.4.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GCC-4.8.4.eb index 6adedf3a5dd1de5e83439e455ff3ce5499a0dd71..ec2211254799f3c3ff9697e1afa4b19c4b49be7f 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GCC-4.8.4.eb @@ -19,5 +19,5 @@ sources = [SOURCE_TAR_GZ] dependencies = [('numactl', '2.0.10')] configopts = "--enable-libnuma=$EBROOTNUMACTL" - + moduleclass = 'system' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GNU-4.9.2-2.25.eb index 33b2aeafd6639d9f349403cd6d394393a9c0af3c..afa499ff97a0b05160efb746cd9ab31687e508cc 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GNU-4.9.2-2.25.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.10.1-GNU-4.9.2-2.25.eb @@ -16,7 +16,7 @@ toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} dependencies = [('numactl', '2.0.10')] configopts = "--enable-libnuma=$EBROOTNUMACTL" - + source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.11.0-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.0-GNU-4.9.3-2.25.eb index 086602c3aaf50781106cfef41fc7f86d4fbcfcea..5b67b5f49085a0f77cfbc12d44152c1806d61ff4 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.11.0-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.0-GNU-4.9.3-2.25.eb @@ -16,7 +16,7 @@ toolchain = {'name': 'GNU', 'version': '4.9.3-2.25'} dependencies = [('numactl', '2.0.10')] configopts = "--enable-libnuma=$EBROOTNUMACTL" - + source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.11.1-GCC-4.9.3.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.1-GCC-4.9.3.eb index a63d6bae6e7dc5ff9f0c2c800dad7f7b8a2a2517..4d49031a3a4a897bf3a9834da7e7c796abe11116 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.11.1-GCC-4.9.3.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.1-GCC-4.9.3.eb @@ -21,4 +21,3 @@ dependencies = [('numactl', '2.0.11')] configopts = "--enable-libnuma=$EBROOTNUMACTL" moduleclass = 'system' - diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.11.1-iccifort-2015.3.187-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.1-iccifort-2015.3.187-GNU-4.9.3-2.25.eb index e2d5ab4c7f9859b2bdc839e5156479b9e157c53b..d803930b96c3f4386b5c5815b7db3b09b2f8d2ef 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.11.1-iccifort-2015.3.187-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.1-iccifort-2015.3.187-GNU-4.9.3-2.25.eb @@ -16,9 +16,8 @@ toolchain = {'name': 'iccifort', 'version': '2015.3.187-GNU-4.9.3-2.25'} dependencies = [('numactl', '2.0.10')] configopts = "--enable-libnuma=$EBROOTNUMACTL" - + source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] sources = [SOURCE_TAR_GZ] moduleclass = 'system' - diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.11.2-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.2-GCC-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..0af84a15f7c3684590e672f1cd8edeec75634169 --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.2-GCC-4.9.3-2.25.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.11.2' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +dependencies = [('numactl', '2.0.11')] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.11.2-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.2-GNU-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..41a09546a092fc36e6e1e097cba4708962f552b9 --- /dev/null +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.11.2-GNU-4.9.3-2.25.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'hwloc' +version = '1.11.2' + +homepage = 'http://www.open-mpi.org/projects/hwloc/' +description = """The Portable Hardware Locality (hwloc) software package provides a portable abstraction + (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including + NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various + system attributes such as cache and memory information as well as the locality of I/O devices such as + network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering + information about modern computing hardware so as to exploit it accordingly and efficiently.""" + +toolchain = {'name': 'GNU', 'version': '4.9.3-2.25'} + +dependencies = [('numactl', '2.0.10')] + +configopts = "--enable-libnuma=$EBROOTNUMACTL" + +source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] +sources = [SOURCE_TAR_GZ] + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ClangGCC-1.1.3.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ClangGCC-1.1.3.eb index 21df4831304fd179be5b7874aa2a1f83f618f92b..3e12868a7814648a03355bd311f3501b6b114f38 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ClangGCC-1.1.3.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ClangGCC-1.1.3.eb @@ -12,7 +12,7 @@ description = """The Portable Hardware Locality (hwloc) software package provide information about modern computing hardware so as to exploit it accordingly and efficiently.""" toolchain = {'name': 'ClangGCC', 'version': '1.1.3'} - + source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.6.4.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.6.4.eb index 3c07bbe6148ecc49ba35e2788c09e9ed7d10dc31..ca74b09ce12d502346c92e5368f401074a62fa12 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.6.4.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.6.4.eb @@ -12,7 +12,7 @@ description = """The Portable Hardware Locality (hwloc) software package provide information about modern computing hardware so as to exploit it accordingly and efficiently.""" toolchain = {'name': 'GCC', 'version': '4.6.4'} - + source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.7.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.7.2.eb index 19d34c3d1a3869cf8c17db553dc21e4a7c8bc9a4..58f69d8db5b1ae2e4341379d468a4b91c68dcb1c 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.7.2.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-GCC-4.7.2.eb @@ -12,7 +12,7 @@ description = """The Portable Hardware Locality (hwloc) software package provide information about modern computing hardware so as to exploit it accordingly and efficiently.""" toolchain = {'name': 'GCC', 'version': '4.7.2'} - + source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ictce-5.3.0.eb index 35e5b4d3bc88cdbafb5d6223c9b63344d7240446..4a1f0300da7427caf218ed1a3c49fe8edb138f53 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.6.2-ictce-5.3.0.eb @@ -12,7 +12,7 @@ description = """The Portable Hardware Locality (hwloc) software package provide information about modern computing hardware so as to exploit it accordingly and efficiently.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} - + source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-GCC-4.8.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-GCC-4.8.2.eb index ade75969bd51fa1e6a6039caf37957578f519de3..13051e6d8152e4a0c9d7cf63a9124dcef4273940 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-GCC-4.8.2.eb @@ -12,7 +12,7 @@ description = """The Portable Hardware Locality (hwloc) software package provide information about modern computing hardware so as to exploit it accordingly and efficiently.""" toolchain = {'name': 'GCC', 'version': '4.8.2'} - + source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-ictce-5.3.0.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-ictce-5.3.0.eb index bbe1c894d7b4aa84facd9222337e531ebc597639..459fa88c69ebf6df9e527e59eeb48426b93023b2 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.7.2-ictce-5.3.0.eb @@ -12,7 +12,7 @@ description = """The Portable Hardware Locality (hwloc) software package provide information about modern computing hardware so as to exploit it accordingly and efficiently.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} - + source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.8-gcccuda-2.6.10.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.8-gcccuda-2.6.10.eb index b8de1f4777b877e6637eac355f27c7f73a51ef6f..b61501e14182cb4fde080f4fcc582559deff11f2 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.8-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.8-gcccuda-2.6.10.eb @@ -12,7 +12,7 @@ description = """The Portable Hardware Locality (hwloc) software package provide information about modern computing hardware so as to exploit it accordingly and efficiently.""" toolchain = {'name': 'gcccuda', 'version': '2.6.10'} - + source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.2.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.2.eb index cb11169e9229014039a5b17c66639748b09857b6..ea7fbe41ddd44b144df98802edc9d7412fc20aad 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.2.eb @@ -12,7 +12,7 @@ description = """The Portable Hardware Locality (hwloc) software package provide information about modern computing hardware so as to exploit it accordingly and efficiently.""" toolchain = {'name': 'GCC', 'version': '4.8.2'} - + source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.3.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.3.eb index dd1343eaa7596f44e5cf116b3a560cd150b61b9f..82f551b2472717ba7ffe776a20974c3991f5b598 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.8.1-GCC-4.8.3.eb @@ -12,7 +12,7 @@ description = """The Portable Hardware Locality (hwloc) software package provide information about modern computing hardware so as to exploit it accordingly and efficiently.""" toolchain = {'name': 'GCC', 'version': '4.8.3'} - + source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.9-GCC-4.8.3.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.9-GCC-4.8.3.eb index c21425bb3c717135c77ff674e13477b6df7c821e..5353d4e58c45e74817f63e5a488a3e1496908f3e 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.9-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.9-GCC-4.8.3.eb @@ -16,7 +16,7 @@ toolchain = {'name': 'GCC', 'version': '4.8.3'} dependencies = [('numactl', '2.0.9')] configopts = "--enable-libnuma=$EBROOTNUMACTL" - + source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/downloads/'] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/h/hwloc/hwloc-1.9-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/h/hwloc/hwloc-1.9-iccifort-2013_sp1.4.211.eb index 528befdb9af0c1e277656fd08222686850b56194..c4ebd968ce52902297e78e3297e81ada3e860666 100644 --- a/easybuild/easyconfigs/h/hwloc/hwloc-1.9-iccifort-2013_sp1.4.211.eb +++ b/easybuild/easyconfigs/h/hwloc/hwloc-1.9-iccifort-2013_sp1.4.211.eb @@ -17,4 +17,3 @@ source_urls = ['http://www.open-mpi.org/software/hwloc/v%(version_major_minor)s/ sources = [SOURCE_TAR_GZ] moduleclass = 'system' - diff --git a/easybuild/easyconfigs/i/IDBA-UD/IDBA-UD-1.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/IDBA-UD/IDBA-UD-1.1.1-goolf-1.4.10.eb index 0ee4a4f74034fad3f36869481aeeec6c9b721695..70a1e78b616072617f59452b60faaf654c8d2571 100644 --- a/easybuild/easyconfigs/i/IDBA-UD/IDBA-UD-1.1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/IDBA-UD/IDBA-UD-1.1.1-goolf-1.4.10.eb @@ -8,7 +8,7 @@ easyblock = 'MakeCp' name = 'IDBA-UD' -version = '1.1.1' +version = '1.1.1' homepage = 'http://i.cs.hku.hk/~alse/hkubrg/projects/idba_ud/' description = """ IDBA-UD is a iterative De Bruijn Graph De Novo Assembler for Short Reads @@ -31,10 +31,10 @@ prebuildopts = './configure && ' buildopts = ' && rm -fr bin/*.o && rm -fr bin/Makefile*' files_to_copy = ["bin", "script", "README", "ChangeLog", "NEWS"] - + sanity_check_paths = { 'files': ["bin/%s" % x for x in ["idba", "idba_hybrid", "idba_tran", - "idba_ud", "parallel_blat", "idba_tran_test"]], + "idba_ud", "parallel_blat", "idba_tran_test"]], 'dirs': [""], } diff --git a/easybuild/easyconfigs/i/IGV/IGV-2.3.68-Java-1.7.0_80.eb b/easybuild/easyconfigs/i/IGV/IGV-2.3.68-Java-1.7.0_80.eb new file mode 100644 index 0000000000000000000000000000000000000000..faccbfa2f16a5ec4601089e37631785770dbb3e5 --- /dev/null +++ b/easybuild/easyconfigs/i/IGV/IGV-2.3.68-Java-1.7.0_80.eb @@ -0,0 +1,38 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'Tarball' + +name = 'IGV' +version = '2.3.68' + +homepage = 'http://www.broadinstitute.org/software/igv/' +description = """ The Integrative Genomics Viewer (IGV) is a high-performance visualization + tool for interactive exploration of large, integrated genomic datasets. It supports a wide + variety of data types, including array-based and next-generation sequence data, and genomic annotations. """ + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['http://data.broadinstitute.org/igv/projects/downloads/'] +sources = ['%(name)s_%(version)s.zip'] + +java = 'Java' +javaver = '1.7.0_80' +versionsuffix = '-%s-%s' % (java, javaver) +dependencies = [(java, javaver)] + +# add the installation dir to PATH +modextrapaths = { + 'PATH': '', +} + +modloadmsg = """ To execute IGV run igv.sh """ + +sanity_check_paths = { + 'files': ["igv.sh"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.68-Java-1.7.0_80.eb b/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.68-Java-1.7.0_80.eb new file mode 100644 index 0000000000000000000000000000000000000000..bc16033a08ab3d4e855b1803f2dd3492f4c69c2f --- /dev/null +++ b/easybuild/easyconfigs/i/IGVTools/IGVTools-2.3.68-Java-1.7.0_80.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'Tarball' + +name = 'IGVTools' +version = '2.3.68' + +homepage = 'http://www.broadinstitute.org/software/igv/' +description = """ This package contains command line utilities for preprocessing, + computing feature count density (coverage), sorting, and indexing data files. + See also http://www.broadinstitute.org/software/igv/igvtools_commandline. """ + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['http://data.broadinstitute.org/igv/projects/downloads/'] +sources = ['%(namelower)s_%(version)s.zip'] + +java = 'Java' +javaver = '1.7.0_80' +versionsuffix = '-%s-%s' % (java, javaver) +dependencies = [(java, javaver)] + +# add the installation dir to PATH +modextrapaths = { + 'PATH': '', +} + +sanity_check_paths = { + 'files': ["igvtools.jar", "igvtools"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_dynamic.eb b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_dynamic.eb index 0c2d1cc059f006bddc7a05b94fb798a5367e0932..03ab71fb0938194dd8c4586db01bb866c3d7aa8c 100644 --- a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_dynamic.eb +++ b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_dynamic.eb @@ -29,4 +29,3 @@ modextrapaths = { } moduleclass = 'bio' - diff --git a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_static.eb b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_static.eb index 0fb795f7ebb564400e36a11a7e35d953cd58f5a7..ba5278c5407ab2b5b8661243d3ceb01035754f3d 100644 --- a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_static.eb +++ b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.0_x86_64_static.eb @@ -29,4 +29,3 @@ modextrapaths = { } moduleclass = 'bio' - diff --git a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_dynamic.eb b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_dynamic.eb new file mode 100644 index 0000000000000000000000000000000000000000..4a7086b810d79990f1551423c09324397d3983a6 --- /dev/null +++ b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_dynamic.eb @@ -0,0 +1,31 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = "Tarball" + +name = 'IMPUTE2' +version = '2.3.2' +versionsuffix = '_x86_64_dynamic' + +homepage = 'http://mathgen.stats.ox.ac.uk/impute/impute_v2.html' +description = """ IMPUTE version 2 (also known as IMPUTE2) is a genotype imputation + and haplotype phasing program based on ideas from Howie et al. 2009 """ + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['https://mathgen.stats.ox.ac.uk/impute/'] +sources = ['%s_v%%(version)s%%(versionsuffix)s.tgz' % name.lower()[:-1]] + +sanity_check_paths = { + 'files': ["impute2"], + 'dirs': ["Example"] +} + +# add the top dir to PATH +modextrapaths = { + 'PATH': '' +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_static.eb b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_static.eb new file mode 100644 index 0000000000000000000000000000000000000000..2f68d383ff68d065fbad7b90c9dd4e4e41dab133 --- /dev/null +++ b/easybuild/easyconfigs/i/IMPUTE2/IMPUTE2-2.3.2_x86_64_static.eb @@ -0,0 +1,31 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = "Tarball" + +name = 'IMPUTE2' +version = '2.3.2' +versionsuffix = '_x86_64_static' + +homepage = 'http://mathgen.stats.ox.ac.uk/impute/impute_v2.html' +description = """ IMPUTE version 2 (also known as IMPUTE2) is a genotype imputation + and haplotype phasing program based on ideas from Howie et al. 2009 """ + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['https://mathgen.stats.ox.ac.uk/impute/'] +sources = ['%s_v%%(version)s%%(versionsuffix)s.tgz' % name.lower()[:-1]] + +sanity_check_paths = { + 'files': ["impute2"], + 'dirs': ["Example"] +} + +# add the top dir to PATH +modextrapaths = { + 'PATH': '' +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb index 2aebd3c1b6e14103d7d31c650df4c1d3274e13a8..da34c32da193b97cabe603aaadcf049c49a58fa7 100644 --- a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb +++ b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-goolf-1.4.10-mpiio.eb @@ -7,7 +7,7 @@ easyblock = 'MakeCp' name = "IOR" version = "2.10.3" -versionsuffix= "-mpiio" +versionsuffix = "-mpiio" homepage = 'http://sourceforge.net/projects/ior-sio/' description = """ The IOR software is used for benchmarking parallel file systems @@ -25,8 +25,8 @@ sources = [SOURCE_TGZ] # gmake all -- IOR with POSIX, MPIIO, HDF5, and NCMPI interfaces buildopts = ' mpiio' -files_to_copy = [(['src/C/IOR'], 'bin'), - "README", "RELEASE_LOG", "UNDOCUMENTED_OPTIONS", "USER_GUIDE", "scripts", "testing"] +files_to_copy = [(['src/C/IOR'], 'bin'), + "README", "RELEASE_LOG", "UNDOCUMENTED_OPTIONS", "USER_GUIDE", "scripts", "testing"] sanity_check_paths = { 'files': ["bin/IOR"], diff --git a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb index 50f1a0bd7d86b32ff54d47b359de794b1b9235d6..7502a94f7139039b50633e00aa3ad0ac5086a84a 100644 --- a/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb +++ b/easybuild/easyconfigs/i/IOR/IOR-2.10.3-intel-2014b-mpiio.eb @@ -7,7 +7,7 @@ easyblock = 'MakeCp' name = "IOR" version = "2.10.3" -versionsuffix= "-mpiio" +versionsuffix = "-mpiio" homepage = 'http://sourceforge.net/projects/ior-sio/' description = """ The IOR software is used for benchmarking parallel file systems @@ -25,8 +25,8 @@ sources = [SOURCE_TGZ] # gmake all -- IOR with POSIX, MPIIO, HDF5, and NCMPI interfaces buildopts = ' mpiio' -files_to_copy = [(['src/C/IOR'], 'bin'), - "README", "RELEASE_LOG", "UNDOCUMENTED_OPTIONS", "USER_GUIDE", "scripts", "testing"] +files_to_copy = [(['src/C/IOR'], 'bin'), + "README", "RELEASE_LOG", "UNDOCUMENTED_OPTIONS", "USER_GUIDE", "scripts", "testing"] sanity_check_paths = { 'files': ["bin/IOR"], diff --git a/easybuild/easyconfigs/i/IPython/IPython-1.1.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/i/IPython/IPython-1.1.0-goolf-1.4.10-Python-2.7.3.eb index 92f605169bdefe0d13a2793776b66062185261b6..8f516796f672c20d4cd04a84e929b88b222ea0db 100644 --- a/easybuild/easyconfigs/i/IPython/IPython-1.1.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/i/IPython/IPython-1.1.0-goolf-1.4.10-Python-2.7.3.eb @@ -37,6 +37,6 @@ sanity_check_paths = { 'dirs': ['lib/python%s/site-packages/IPython' % pyshortver], } -sanity_check_commands = [('iptest','')] +sanity_check_commands = [('iptest', '')] moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/IPython/IPython-3.1.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/i/IPython/IPython-3.1.0-intel-2015a-Python-2.7.9.eb index 4ddce0d14217ddea9252339d3f412bfbf3096dc5..97bb8abc4463542880ad9bdcf4703627237ec3de 100644 --- a/easybuild/easyconfigs/i/IPython/IPython-3.1.0-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/i/IPython/IPython-3.1.0-intel-2015a-Python-2.7.9.eb @@ -40,6 +40,6 @@ sanity_check_paths = { 'dirs': ['lib/python%s/site-packages/IPython' % pyshortver], } -sanity_check_commands = [('iptest','')] +sanity_check_commands = [('iptest', '')] moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/IPython/IPython-3.2.0-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/i/IPython/IPython-3.2.0-foss-2015a-Python-2.7.9.eb index ca831cfe277d6b150831f9d9ed43addffeb5ac45..f7ae347c5ebc5059734e908fe3e8770f054187be 100644 --- a/easybuild/easyconfigs/i/IPython/IPython-3.2.0-foss-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/i/IPython/IPython-3.2.0-foss-2015a-Python-2.7.9.eb @@ -40,6 +40,6 @@ sanity_check_paths = { 'dirs': ['lib/python%s/site-packages/IPython' % pyshortver], } -sanity_check_commands = [('iptest','')] +sanity_check_commands = [('iptest', '')] moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/IPython/IPython-3.2.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/i/IPython/IPython-3.2.0-intel-2015a-Python-2.7.9.eb index 5b0893e10be373866c73d86d2eb56554615bc7b7..57149b7b99d5a0a6c72d76855d182e8ca2a8fb40 100644 --- a/easybuild/easyconfigs/i/IPython/IPython-3.2.0-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/i/IPython/IPython-3.2.0-intel-2015a-Python-2.7.9.eb @@ -40,6 +40,6 @@ sanity_check_paths = { 'dirs': ['lib/python%s/site-packages/IPython' % pyshortver], } -sanity_check_commands = [('iptest','')] +sanity_check_commands = [('iptest', '')] moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/IPython/IPython-3.2.3-foss-2015a-Python-2.7.11.eb b/easybuild/easyconfigs/i/IPython/IPython-3.2.3-foss-2015a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..6a2901ff52a1797d22ba3a8af5a5ae668b2fb4d5 --- /dev/null +++ b/easybuild/easyconfigs/i/IPython/IPython-3.2.3-foss-2015a-Python-2.7.11.eb @@ -0,0 +1,90 @@ +easyblock = 'Bundle' + +name = 'IPython' +version = '3.2.3' + +homepage = 'http://ipython.org/index.html' +description = """IPython provides a rich architecture for interactive computing with: + Powerful interactive shells (terminal and Qt-based). + A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. + Support for interactive data visualization and use of GUI toolkits. + Flexible, embeddable interpreters to load into your own projects. + Easy to use, high performance tools for parallel computing.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +python = 'Python' +pyver = '2.7.11' +pyshortver = '.'.join(pyver.split('.')[:2]) +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), + ('PyZMQ', '15.2.0', '%s-zmq4' % versionsuffix), +] + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' +exts_filter = ("python -c 'import %(ext_name)s'", '') + +exts_list = [ + ('pysqlite', '2.8.1', { + 'modulename': 'pysqlite2', + 'source_urls': ['https://pypi.python.org/packages/source/p/pysqlite/'], + }), + ('requests', '2.9.1', { + 'source_urls': ['https://pypi.python.org/packages/source/r/requests/'], + }), + ('Pygments', '2.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/P/Pygments/'], + }), + ('singledispatch', '3.4.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/s/singledispatch/'], + }), + ('backports.ssl_match_hostname', '3.5.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/b/backports.ssl_match_hostname/'], + }), + ('certifi', '2015.11.20.1', { + 'source_urls': ['https://pypi.python.org/packages/source/c/certifi/'], + }), + ('backports_abc', '0.4', { + 'source_urls': ['https://pypi.python.org/packages/source/b/backports_abc/'], + }), + ('tornado', '4.3', { + 'source_urls': ['https://pypi.python.org/packages/source/t/tornado/'], + }), + ('Jinja2', '2.8', { + 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2/'], + }), + ('jsonschema', '2.5.1', { + 'source_urls': ['https://pypi.python.org/packages/source/j/jsonschema/'], + }), + ('mistune', '0.7.1', { + 'source_urls': ['https://pypi.python.org/packages/source/m/mistune/'], + }), + ('ptyprocess', '0.5', { + 'source_urls': ['https://pypi.python.org/packages/source/p/ptyprocess/'], + }), + ('terminado', '0.6', { + 'source_urls': ['https://pypi.python.org/packages/source/t/terminado/'], + }), + ('ipython', version, { + 'source_urls': ['https://pypi.python.org/packages/source/i/ipython/'], + 'modulename': 'IPython', + }), +] + +modextrapaths = {'PYTHONPATH': ['lib/python%s/site-packages' % pyshortver]} + +sanity_check_paths = { + 'files': ['bin/ipython'], + 'dirs': ['lib/python%s/site-packages/IPython' % pyshortver], +} + +sanity_check_commands = [ + ('ipython -h', ''), + ('ipython notebook --help', ''), + ('iptest', ''), +] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/IPython/IPython-3.2.3-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/i/IPython/IPython-3.2.3-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..fd3e839da8d3eb686b8b3de324ca76daf1b04802 --- /dev/null +++ b/easybuild/easyconfigs/i/IPython/IPython-3.2.3-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,90 @@ +easyblock = 'Bundle' + +name = 'IPython' +version = '3.2.3' + +homepage = 'http://ipython.org/index.html' +description = """IPython provides a rich architecture for interactive computing with: + Powerful interactive shells (terminal and Qt-based). + A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. + Support for interactive data visualization and use of GUI toolkits. + Flexible, embeddable interpreters to load into your own projects. + Easy to use, high performance tools for parallel computing.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +python = 'Python' +pyver = '2.7.10' +pyshortver = '.'.join(pyver.split('.')[:2]) +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), + ('PyZMQ', '15.1.0', '%s-zmq4' % versionsuffix), +] + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' +exts_filter = ("python -c 'import %(ext_name)s'", '') + +exts_list = [ + ('pysqlite', '2.8.1', { + 'modulename': 'pysqlite2', + 'source_urls': ['https://pypi.python.org/packages/source/p/pysqlite/'], + }), + ('requests', '2.9.1', { + 'source_urls': ['https://pypi.python.org/packages/source/r/requests/'], + }), + ('Pygments', '2.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/P/Pygments/'], + }), + ('singledispatch', '3.4.0.3', { + 'source_urls': ['https://pypi.python.org/packages/source/s/singledispatch/'], + }), + ('backports.ssl_match_hostname', '3.5.0.1', { + 'source_urls': ['https://pypi.python.org/packages/source/b/backports.ssl_match_hostname/'], + }), + ('certifi', '2015.11.20.1', { + 'source_urls': ['https://pypi.python.org/packages/source/c/certifi/'], + }), + ('backports_abc', '0.4', { + 'source_urls': ['https://pypi.python.org/packages/source/b/backports_abc/'], + }), + ('tornado', '4.3', { + 'source_urls': ['https://pypi.python.org/packages/source/t/tornado/'], + }), + ('Jinja2', '2.8', { + 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2/'], + }), + ('jsonschema', '2.5.1', { + 'source_urls': ['https://pypi.python.org/packages/source/j/jsonschema/'], + }), + ('mistune', '0.7.1', { + 'source_urls': ['https://pypi.python.org/packages/source/m/mistune/'], + }), + ('ptyprocess', '0.5', { + 'source_urls': ['https://pypi.python.org/packages/source/p/ptyprocess/'], + }), + ('terminado', '0.6', { + 'source_urls': ['https://pypi.python.org/packages/source/t/terminado/'], + }), + ('ipython', version, { + 'source_urls': ['https://pypi.python.org/packages/source/i/ipython/'], + 'modulename': 'IPython', + }), +] + +modextrapaths = {'PYTHONPATH': ['lib/python%s/site-packages' % pyshortver]} + +sanity_check_paths = { + 'files': ['bin/ipython'], + 'dirs': ['lib/python%s/site-packages/IPython' % pyshortver], +} + +sanity_check_commands = [ + ('ipython -h', ''), + ('ipython notebook --help', ''), + ('iptest', ''), +] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb b/easybuild/easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb index f6423e5d6eb43d9926048ed3846f1c38e871353e..a303238f9baa35fbc99998108c12930223c78d20 100644 --- a/easybuild/easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/ISL/ISL-0.14-GCC-4.9.2.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_BZ2] dependencies = [('GMP', '6.0.0a')] sanity_check_paths = { - 'files': ['lib/libisl.so', 'lib/libisl.a'], + 'files': ['lib/libisl.%s' % SHLIB_EXT, 'lib/libisl.a'], 'dirs': ['include/isl'] } diff --git a/easybuild/easyconfigs/i/ISL/ISL-0.15-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ISL/ISL-0.15-GCC-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..e711a7699f943604f90fb879c2b6bee8ce487fb6 --- /dev/null +++ b/easybuild/easyconfigs/i/ISL/ISL-0.15-GCC-4.9.3-2.25.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'ISL' +version = '0.15' + +homepage = 'http://isl.gforge.inria.fr/' +description = """isl is a library for manipulating sets and relations of integer points bounded by linear constraints.""" + +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} + +source_urls = ['http://isl.gforge.inria.fr/'] +sources = [SOURCELOWER_TAR_BZ2] + +dependencies = [('GMP', '6.1.0')] + +sanity_check_paths = { + 'files': ['lib/libisl.%s' % SHLIB_EXT, 'lib/libisl.a'], + 'dirs': ['include/isl'] +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/i/ISL/ISL-0.15-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ISL/ISL-0.15-GNU-4.9.3-2.25.eb index d4fff8d35c421405a762cf15c30cdfaace024811..5ae9fcabbc1acb996a8a8a62bfbe85039c8e214a 100644 --- a/easybuild/easyconfigs/i/ISL/ISL-0.15-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ISL/ISL-0.15-GNU-4.9.3-2.25.eb @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_BZ2] dependencies = [('GMP', '6.0.0a')] sanity_check_paths = { - 'files': ['lib/libisl.so', 'lib/libisl.a'], + 'files': ['lib/libisl.%s' % SHLIB_EXT, 'lib/libisl.a'], 'dirs': ['include/isl'] } diff --git a/easybuild/easyconfigs/i/ImageMagick/ImageMagick-6.9.3-3-goolf-1.4.10.eb b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-6.9.3-3-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..8b641aebb3fb7d26671219c614371b582c2eb26f --- /dev/null +++ b/easybuild/easyconfigs/i/ImageMagick/ImageMagick-6.9.3-3-goolf-1.4.10.eb @@ -0,0 +1,40 @@ +easyblock = 'ConfigureMake' + +name = 'ImageMagick' +version = '6.9.3-3' + +homepage = 'http://www.imagemagick.org/' +description = """ImageMagick is a software suite to create, edit, compose, or convert bitmap images""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['https://launchpad.net/imagemagick/main/%(version)s/+download/'] + +dependencies = [ + ('bzip2', '1.0.6'), + ('freetype', '2.5.0.1'), + ('Ghostscript', '9.10'), + ('JasPer', '1.900.1'), + ('libjpeg-turbo', '1.4.2'), + ('LibTIFF', '4.0.3'), + ('libX11', '1.6.1'), + ('libXext', '1.3.2'), + ('libXt', '1.1.4'), + ('LittleCMS', '2.7'), +] + +builddependencies = [ + ('pkg-config', '0.27.1'), +] + +configopts = "--with-gslib --with-x" + +sanity_check_paths = { + 'files': [], + 'dirs': ['bin', 'etc/%(name)s-%(version_major)s', 'include/%(name)s-%(version_major)s', 'lib', 'share'], +} + +modextravars = {'MAGICK_HOME': '%(installdir)s'} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb index cd6c0100f08f2c509b80b82fc15bc10e391e2247..807ce3ee014df080a94e553bfaf42693b716fe69 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goalf-1.1.0-no-OFED.eb @@ -26,9 +26,9 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['ftp://selab.janelia.org/pub/software/%s' % name.lower()] sanity_check_paths = { - 'files': ['bin/cm%s' % x for x in ['align', 'build', 'calibrate', 'convert', 'emit', - 'fetch', 'press', 'scan', 'search', 'stat']], - 'dirs': [] - } + 'files': ['bin/cm%s' % x for x in ['align', 'build', 'calibrate', 'convert', 'emit', + 'fetch', 'press', 'scan', 'search', 'stat']], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb index 051737c067f876345f8d748afa269a0b836ce56e..9c4049ce58e9998e3929e18da57dd8adfc8fb4f1 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-goolf-1.4.10.eb @@ -26,9 +26,9 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['ftp://selab.janelia.org/pub/software/%s' % name.lower()] sanity_check_paths = { - 'files': ['bin/cm%s' % x for x in ['align', 'build', 'calibrate', 'convert', 'emit', - 'fetch', 'press', 'scan', 'search', 'stat']], - 'dirs': [] - } + 'files': ['bin/cm%s' % x for x in ['align', 'build', 'calibrate', 'convert', 'emit', + 'fetch', 'press', 'scan', 'search', 'stat']], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb index 6c6330c16bc26fbc8d3752b75f212ddb119f06f9..3fb03037b9e60388f189914d9a25de3ec6c6c21d 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-4.0.6.eb @@ -26,9 +26,9 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['ftp://selab.janelia.org/pub/software/%s' % name.lower()] sanity_check_paths = { - 'files': ['bin/cm%s' % x for x in ['align', 'build', 'calibrate', 'convert', 'emit', - 'fetch', 'press', 'scan', 'search', 'stat']], - 'dirs': [] - } + 'files': ['bin/cm%s' % x for x in ['align', 'build', 'calibrate', 'convert', 'emit', + 'fetch', 'press', 'scan', 'search', 'stat']], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb index d47730c4ff6f64a8614939def0b35c0fc7b6b670..ee33a329e8a21c174f556b90b892f29c9a35f60f 100644 --- a/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Infernal/Infernal-1.1rc1-ictce-5.3.0.eb @@ -26,9 +26,9 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['ftp://selab.janelia.org/pub/software/%s' % name.lower()] sanity_check_paths = { - 'files': ['bin/cm%s' % x for x in ['align', 'build', 'calibrate', 'convert', 'emit', - 'fetch', 'press', 'scan', 'search', 'stat']], - 'dirs': [] - } + 'files': ['bin/cm%s' % x for x in ['align', 'build', 'calibrate', 'convert', 'emit', + 'fetch', 'press', 'scan', 'search', 'stat']], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/i/Inspector/Inspector-2013_update6.eb b/easybuild/easyconfigs/i/Inspector/Inspector-2013_update6.eb index 21b9d17975bb49c26f2174232ca5c8d1e390adce..6959edee5c90246e162d2b19969f05f84f7e7752 100644 --- a/easybuild/easyconfigs/i/Inspector/Inspector-2013_update6.eb +++ b/easybuild/easyconfigs/i/Inspector/Inspector-2013_update6.eb @@ -4,7 +4,7 @@ version = '2013_update6' homepage = 'http://software.intel.com/en-us/intel-inspector-xe' description = "Intel Inspector XE 2013 is an easy to use memory error checker and thread checker for serial and parallel applications" -toolchain = {'name':'dummy','version':'dummy'} +toolchain = {'name': 'dummy', 'version': 'dummy'} sources = ['inspector_xe_%s.tar.gz' % version] diff --git a/easybuild/easyconfigs/i/Instant/Instant-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/i/Instant/Instant-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 277a6eef32f513f2be4e5b1a007a60e01a326aea..538671288fccd2774215f3b9370b79f716776f50 100644 --- a/easybuild/easyconfigs/i/Instant/Instant-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/i/Instant/Instant-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -20,13 +20,13 @@ pythonshortversion = ".".join(pythonversion.split(".")[:-1]) versionsuffix = '-%s-%s' % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('SWIG', '2.0.4', versionsuffix), - ] + (python, pythonversion), + ('SWIG', '2.0.4', versionsuffix), +] sanity_check_paths = { - 'files': [], - 'dirs': ['bin', 'lib/python%s/site-packages/instant' % pythonshortversion] - } + 'files': [], + 'dirs': ['bin', 'lib/python%s/site-packages/instant' % pythonshortversion] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/i/Instant/Instant-1.0.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/i/Instant/Instant-1.0.0-goolf-1.4.10-Python-2.7.3.eb index 03e594c798ae49f2bfecd067559042d34c918cff..6966353326c301fb1382196161665d667cf7b8a4 100644 --- a/easybuild/easyconfigs/i/Instant/Instant-1.0.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/i/Instant/Instant-1.0.0-goolf-1.4.10-Python-2.7.3.eb @@ -19,13 +19,13 @@ pythonshortversion = ".".join(pythonversion.split(".")[:-1]) versionsuffix = '-%s-%s' % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('SWIG', '2.0.4', versionsuffix), - ] + (python, pythonversion), + ('SWIG', '2.0.4', versionsuffix), +] sanity_check_paths = { - 'files': [], - 'dirs': ['bin', 'lib/python%s/site-packages/instant' % pythonshortversion] - } + 'files': [], + 'dirs': ['bin', 'lib/python%s/site-packages/instant' % pythonshortversion] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/i/Instant/Instant-1.0.0-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/i/Instant/Instant-1.0.0-ictce-4.0.6-Python-2.7.3.eb index 564d83ba0f2533a916e13f7b7f9a1b4904d0e29a..9177b94846d4cc5b29c501415e4d281cfbab1239 100644 --- a/easybuild/easyconfigs/i/Instant/Instant-1.0.0-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/i/Instant/Instant-1.0.0-ictce-4.0.6-Python-2.7.3.eb @@ -20,13 +20,13 @@ pythonshortversion = ".".join(pythonversion.split(".")[:-1]) versionsuffix = '-%s-%s' % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('SWIG', '2.0.4', versionsuffix), - ] + (python, pythonversion), + ('SWIG', '2.0.4', versionsuffix), +] sanity_check_paths = { - 'files': [], - 'dirs': ['bin', 'lib/python%s/site-packages/instant' % pythonshortversion] - } + 'files': [], + 'dirs': ['bin', 'lib/python%s/site-packages/instant' % pythonshortversion] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/i/Instant/Instant-1.0.0-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/i/Instant/Instant-1.0.0-ictce-5.3.0-Python-2.7.3.eb index bc7d16b9ba7a19318f30fc0b39979a8e38080993..4e88df40472d2e7b4eb64f1edc2f0f0848b3c8a3 100644 --- a/easybuild/easyconfigs/i/Instant/Instant-1.0.0-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/i/Instant/Instant-1.0.0-ictce-5.3.0-Python-2.7.3.eb @@ -21,13 +21,13 @@ pythonshortversion = ".".join(pythonversion.split(".")[:-1]) versionsuffix = '-%s-%s' % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('SWIG', '2.0.4', versionsuffix), - ] + (python, pythonversion), + ('SWIG', '2.0.4', versionsuffix), +] sanity_check_paths = { - 'files': [], - 'dirs': ['bin', 'lib/python%s/site-packages/instant' % pythonshortversion] - } + 'files': [], + 'dirs': ['bin', 'lib/python%s/site-packages/instant' % pythonshortversion] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/i/Instant/Instant-1.6.0-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/i/Instant/Instant-1.6.0-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..84082aadb44eb9d5e7b54734e43f2a84a9daa9ef --- /dev/null +++ b/easybuild/easyconfigs/i/Instant/Instant-1.6.0-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,36 @@ +easyblock = 'PythonPackage' + +name = 'Instant' +version = '1.6.0' + +homepage = 'https://bitbucket.org/fenics-project/instant' +description = """Instant is a Python module that allows for instant inlining of C and C++ code in Python. + It is a small Python module built on top of SWIG and Distutils.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['https://bitbucket.org/fenics-project/instant/downloads/'] +sources = [SOURCELOWER_TAR_GZ] + +pyver = '2.7.11' +versionsuffix = '-Python-%s' % pyver + +dependencies = [ + ('Python', pyver), + ('SWIG', '3.0.8', versionsuffix), + ('CMake', '3.4.1'), # runtime dep! +] + +# compiler-related variables *must* be set, since Instant does runtime compilation and remembers $CFLAGS/$CXXFLAGS +modextravars = { + 'CC': 'icc', + 'CXX': 'icpc', +} + +pyshortver = '.'.join(pyver.split('.')[:2]) +sanity_check_paths = { + 'files': [], + 'dirs': ['bin', 'lib/python%s/site-packages' % pyshortver] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb index 2bd2eaa62000aa71e4d71fd365fb24780a3c3172..974a5d000e3e345cdd6519e45c80a39f54d5a898 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goalf-1.1.0-no-OFED.eb @@ -24,8 +24,8 @@ source_urls = [('http://sourceforge.net/projects/iperf/files', 'download')] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sanity_check_paths = { - 'files': ['bin/iperf'], - 'dirs': [] - } + 'files': ['bin/iperf'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb index c1d7b2439f9586ed6c8257b0d0cddf92a2adfd74..68b608ac4bd2e8724d8e03501997b0fbebc56811 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-goolf-1.4.10.eb @@ -23,8 +23,8 @@ source_urls = [('http://sourceforge.net/projects/iperf/files', 'download')] toolchain = {'name': 'goolf', 'version': '1.4.10'} sanity_check_paths = { - 'files': ['bin/iperf'], - 'dirs': [] - } + 'files': ['bin/iperf'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb index 27fbe32e7f7c55f88c0bff11ae35e78845f1d041..c6a180825f846625321f0cb27ca3c5b4161347d5 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-4.0.6.eb @@ -24,8 +24,8 @@ source_urls = [('http://sourceforge.net/projects/iperf/files', 'download')] toolchain = {'version': '4.0.6', 'name': 'ictce'} sanity_check_paths = { - 'files': ['bin/iperf'], - 'dirs': [] - } + 'files': ['bin/iperf'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb index a244a5f6bbeaabcee0778766366a4af0cd766c7a..3bbd50af7cec28fa0df6e687ceb9b31f76a64db0 100644 --- a/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/i/Iperf/Iperf-2.0.5-ictce-5.3.0.eb @@ -25,8 +25,8 @@ source_urls = [('http://sourceforge.net/projects/iperf/files', 'download')] toolchain = {'name': 'ictce', 'version': '5.3.0'} sanity_check_paths = { - 'files': ['bin/iperf'], - 'dirs': [] - } + 'files': ['bin/iperf'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-goolf-1.4.10.eb b/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-goolf-1.4.10.eb index 7dc3787320bc598d08a264e33b4b08762faf3e69..5f710302572515b9ff700697fed00fb8a2abd76e 100644 --- a/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-goolf-1.4.10.eb @@ -20,7 +20,7 @@ sources = [ ] source_urls = ['http://www.cs.ucr.edu/~jianxing'] -dependencies = [ +dependencies = [ ('QuadProg++', '1.2.1'), ('GLPK', '4.53'), ('GSL', '1.16') diff --git a/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-ictce-6.2.5.eb b/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-ictce-6.2.5.eb index 436dd9a680a2451f2d7f6ce26212a76346e6fe97..10342bedf08e9c840b57a8350355ce41e929627e 100644 --- a/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/i/IsoInfer/IsoInfer-0.9.1-ictce-6.2.5.eb @@ -20,7 +20,7 @@ sources = [ ] source_urls = ['http://www.cs.ucr.edu/~jianxing'] -dependencies = [ +dependencies = [ ('QuadProg++', '1.2.1'), ('GLPK', '4.53'), ('GSL', '1.16') diff --git a/easybuild/easyconfigs/i/icc/icc-2013.5.192-GCC-4.8.3.eb b/easybuild/easyconfigs/i/icc/icc-2013.5.192-GCC-4.8.3.eb index 23b5d632b056950be2a140e46945cd265f8f3c0f..446396ee03bca9646ad8dc1b95f4e1ecd10deb25 100644 --- a/easybuild/easyconfigs/i/icc/icc-2013.5.192-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/i/icc/icc-2013.5.192-GCC-4.8.3.eb @@ -4,7 +4,7 @@ version = '2013.5.192' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2013_sp1.4.211.eb b/easybuild/easyconfigs/i/icc/icc-2013_sp1.4.211.eb index f375c6b518c03a1a48d1bb1c5f4ff85007b2df55..5850a5593b8fa689aa19f82bb6218802df3e914d 100644 --- a/easybuild/easyconfigs/i/icc/icc-2013_sp1.4.211.eb +++ b/easybuild/easyconfigs/i/icc/icc-2013_sp1.4.211.eb @@ -17,4 +17,3 @@ dontcreateinstalldir = 'True' # license file import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") - diff --git a/easybuild/easyconfigs/i/icc/icc-2015.0.090-GCC-4.9.2.eb b/easybuild/easyconfigs/i/icc/icc-2015.0.090-GCC-4.9.2.eb index 1c9509e4eddf61c8ff69d179a19edaf32013882a..d02dca7d2281aaedc0546b3524d6173c5d37f562 100644 --- a/easybuild/easyconfigs/i/icc/icc-2015.0.090-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/icc/icc-2015.0.090-GCC-4.9.2.eb @@ -4,7 +4,7 @@ version = '2015.0.090' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/i/icc/icc-2015.1.133-GCC-4.9.2.eb index b54726809800307d62205b10bb84334e340ae16d..368b594177c120009bb61d4e425661a0b21dd4a1 100644 --- a/easybuild/easyconfigs/i/icc/icc-2015.1.133-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/icc/icc-2015.1.133-GCC-4.9.2.eb @@ -4,7 +4,7 @@ version = '2015.1.133' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2015.2.164-GCC-4.9.2.eb b/easybuild/easyconfigs/i/icc/icc-2015.2.164-GCC-4.9.2.eb index edbddbc36da3ea72a3c2074c557f206da85f78e8..8439c044f45586a1956d414446ce6cdeaa1d896d 100644 --- a/easybuild/easyconfigs/i/icc/icc-2015.2.164-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/icc/icc-2015.2.164-GCC-4.9.2.eb @@ -4,7 +4,7 @@ version = '2015.2.164' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%(version)s.tgz'] @@ -21,4 +21,3 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") moduleclass = 'compiler' - diff --git a/easybuild/easyconfigs/i/icc/icc-2015.3.187-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2015.3.187-GNU-4.9.3-2.25.eb index aca2626f977b0f84d2108eff3c8aaaaf53b859ee..37331a148806eae1f491109ae7e963dd503e9318 100644 --- a/easybuild/easyconfigs/i/icc/icc-2015.3.187-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2015.3.187-GNU-4.9.3-2.25.eb @@ -4,7 +4,7 @@ version = '2015.3.187' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%(version)s.tgz'] @@ -21,4 +21,3 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") moduleclass = 'compiler' - diff --git a/easybuild/easyconfigs/i/icc/icc-2015.5.223-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2015.5.223-GCC-4.9.3-2.25.eb index 3a9d4088aee0c036ec6a4522167fbdbb75fe1c94..1ca6568cb7049f00c1696a87484efb06caaf1028 100644 --- a/easybuild/easyconfigs/i/icc/icc-2015.5.223-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2015.5.223-GCC-4.9.3-2.25.eb @@ -4,7 +4,7 @@ version = '2015.5.223' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_ccompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2016.0.109-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2016.0.109-GCC-4.9.3-2.25.eb index 7354472c7ec882d2363fbbdcfce80a8f9425dbc0..4ec5788f7fdff6ec2071dfef95b8dfdce4b6aac8 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.0.109-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.0.109-GCC-4.9.3-2.25.eb @@ -6,7 +6,7 @@ version = '2016.0.109' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_cpp.tgz'] diff --git a/easybuild/easyconfigs/i/icc/icc-2016.1.150-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/icc/icc-2016.1.150-GCC-4.9.3-2.25.eb index 0748e2d4000b52a9699fdbddd005d5f74a4a11bd..2a840e4a5b01583ad4b9547930a707cce737e556 100644 --- a/easybuild/easyconfigs/i/icc/icc-2016.1.150-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/icc/icc-2016.1.150-GCC-4.9.3-2.25.eb @@ -6,7 +6,7 @@ version = '2016.1.150' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_cpp_update%(version_minor)s.tgz'] diff --git a/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.4.211.eb index 767174222ae249727ee00f448200c54f3bb3a5ad..8132cf523d42e81c9337b31aa0df90e9657b9abb 100644 --- a/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.4.211.eb +++ b/easybuild/easyconfigs/i/iccifort/iccifort-2013_sp1.4.211.eb @@ -15,4 +15,3 @@ dependencies = [ ] moduleclass = 'toolchain' - diff --git a/easybuild/easyconfigs/i/ictce/ictce-4.0.6.eb b/easybuild/easyconfigs/i/ictce/ictce-4.0.6.eb index 72df26b46c7617793222c179184769ae1946eaaa..77fb61dc74e09ef57ba0fc218f3e1238e68913bc 100644 --- a/easybuild/easyconfigs/i/ictce/ictce-4.0.6.eb +++ b/easybuild/easyconfigs/i/ictce/ictce-4.0.6.eb @@ -9,7 +9,7 @@ description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and toolchain = {'name': 'dummy', 'version': 'dummy'} compver = '2011.6.233' -dependencies = [ +dependencies = [ ('icc', compver), ('ifort', compver), ('impi', '4.0.2.003', '', ('iccifort', compver)), diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013.5.192-GCC-4.8.3.eb b/easybuild/easyconfigs/i/ifort/ifort-2013.5.192-GCC-4.8.3.eb index cba97b45a2ca9094278809183f3bf838fe62b109..901fc019cc7f3ba3dc4097b62266d151ff9a4297 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2013.5.192-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2013.5.192-GCC-4.8.3.eb @@ -4,7 +4,7 @@ version = '2013.5.192' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.4.211.eb index e3dcbcdd250a63992f2df915f8f6ba40c46ec63b..4e061aba7c0fdce3297312b90923f47b6d7234a5 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.4.211.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.4.211.eb @@ -17,4 +17,3 @@ dontcreateinstalldir = 'True' # license file import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") - diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.0.090-GCC-4.9.2.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.0.090-GCC-4.9.2.eb index 6f1139a94c33e3ceeadb501d842063a6ee29c779..a94df9884bd0363204bda12daba89bf92a9dd2cb 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2015.0.090-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.0.090-GCC-4.9.2.eb @@ -4,7 +4,7 @@ version = '2015.0.090' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.1.133-GCC-4.9.2.eb index b653c4f8582b152d712ff61bb3e36bdd92730358..419e0257c0918bc09851082a152b1a35a3cf4cfb 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2015.1.133-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.1.133-GCC-4.9.2.eb @@ -4,7 +4,7 @@ version = '2015.1.133' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.2.164-GCC-4.9.2.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.2.164-GCC-4.9.2.eb index 4f376249d8f9c0f98cc9237ea557ef87d07bd90e..5767d1400f2405ac64a1aa5fcc1520ec39404aa3 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2015.2.164-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.2.164-GCC-4.9.2.eb @@ -4,7 +4,7 @@ version = '2015.2.164' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.3.187-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.3.187-GNU-4.9.3-2.25.eb index f944202e890a53a19f790165d933071c3bb78cc6..0f54df3a82e9919122dd17cf8d1cdcc8a7c74f83 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2015.3.187-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.3.187-GNU-4.9.3-2.25.eb @@ -4,7 +4,7 @@ version = '2015.3.187' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2015.5.223-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2015.5.223-GCC-4.9.3-2.25.eb index faee88adb1dbf888676eeaaae52029a34a2654a8..2fd9b5a9467ab1b0bf0b4a2f56bbf539d2d3863a 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2015.5.223-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2015.5.223-GCC-4.9.3-2.25.eb @@ -4,7 +4,7 @@ version = '2015.5.223' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "Fortran compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_fcompxe_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.0.109-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.0.109-GCC-4.9.3-2.25.eb index c188753ac5274d0fe96de44d731c5e5f5049528c..930a3dc326c96245d2e4e712421822273ba855bf 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.0.109-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.0.109-GCC-4.9.3-2.25.eb @@ -6,7 +6,7 @@ version = '2016.0.109' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_fortran.tgz'] diff --git a/easybuild/easyconfigs/i/ifort/ifort-2016.1.150-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/ifort/ifort-2016.1.150-GCC-4.9.3-2.25.eb index f961cef224fc6092654905862e8fd7afc6b55f4e..dd3cee42fa29a7920144a99e0b66e7e9c2d78a77 100644 --- a/easybuild/easyconfigs/i/ifort/ifort-2016.1.150-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/ifort/ifort-2016.1.150-GCC-4.9.3-2.25.eb @@ -6,7 +6,7 @@ version = '2016.1.150' homepage = 'http://software.intel.com/en-us/intel-compilers/' description = "C and C++ compiler from Intel" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['parallel_studio_xe_%(version_major)s_composer_edition_for_fortran_update%(version_minor)s.tgz'] diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.00-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.00-GCC-4.9.3-2.25.eb index b4eb7cc8a8ed06d954fcb37b88836d76a9fda902..73e504fad6c83d8d3425e40d8a6c2274c1ffc7bd 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.00-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.00-GCC-4.9.3-2.25.eb @@ -18,4 +18,3 @@ dependencies = [ ] moduleclass = 'toolchain' - diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-2016.01-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iimpi/iimpi-2016.01-GCC-4.9.3-2.25.eb index 7d57b6f4a503caeff8ff5d34a3a2c0eb98fc1e41..5df1cad542eb747b126a74da8d82ff446871c7fe 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-2016.01-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-2016.01-GCC-4.9.3-2.25.eb @@ -20,4 +20,3 @@ dependencies = [ ] moduleclass = 'toolchain' - diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-4.0.6.eb b/easybuild/easyconfigs/i/iimpi/iimpi-4.0.6.eb index ffa9bd38436d4745dbdef967a3befcb5553a62f0..51b3aa5c0ff843a35c7b386faab80f6f07797828 100644 --- a/easybuild/easyconfigs/i/iimpi/iimpi-4.0.6.eb +++ b/easybuild/easyconfigs/i/iimpi/iimpi-4.0.6.eb @@ -9,7 +9,7 @@ description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" toolchain = {'name': 'dummy', 'version': 'dummy'} compver = '2011.6.233' -dependencies = [ +dependencies = [ ('icc', compver), ('ifort', compver), ('impi', '4.0.2.003', '', ('iccifort', compver)), diff --git a/easybuild/easyconfigs/i/iimpi/iimpi-8.1.5-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/iimpi/iimpi-8.1.5-GCC-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..43b5e47c98624b655a14eb5d4ecee475b1c60e71 --- /dev/null +++ b/easybuild/easyconfigs/i/iimpi/iimpi-8.1.5-GCC-4.9.3-2.25.eb @@ -0,0 +1,19 @@ +easyblock = "Toolchain" + +name = 'iimpi' +version = '8.1.5' +versionsuffix = '-GCC-4.9.3-2.25' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel C/C++ and Fortran compilers, alongside Intel MPI.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2016.1.150' +dependencies = [ + ('icc', compver, versionsuffix), + ('ifort', compver, versionsuffix), + ('impi', '5.1.2.150', '', ('iccifort', '%s%s' % (compver, versionsuffix))), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iiqmpi/iiqmpi-3.3.0.eb b/easybuild/easyconfigs/i/iiqmpi/iiqmpi-3.3.0.eb index 3044633d52d2542dfdc16fd1ecf2ebe9553e897d..fc4f68936d46cfdf857774aaaa859d3bfdbec427 100644 --- a/easybuild/easyconfigs/i/iiqmpi/iiqmpi-3.3.0.eb +++ b/easybuild/easyconfigs/i/iiqmpi/iiqmpi-3.3.0.eb @@ -17,9 +17,9 @@ dependencies = [ ] modextravars = { - 'MPICH_CC':'icc', - 'MPICH_F77':'ifort', - 'MPICH_F90':'ifort', + 'MPICH_CC': 'icc', + 'MPICH_F77': 'ifort', + 'MPICH_F90': 'ifort', } moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iiqmpi/iiqmpi-4.4.13.eb b/easybuild/easyconfigs/i/iiqmpi/iiqmpi-4.4.13.eb index 1091bb646e31d91f130d8c2b6e724c825c20084e..df8e9f4731bd1e508cbeba20db1b3488303ebf4a 100644 --- a/easybuild/easyconfigs/i/iiqmpi/iiqmpi-4.4.13.eb +++ b/easybuild/easyconfigs/i/iiqmpi/iiqmpi-4.4.13.eb @@ -17,9 +17,9 @@ dependencies = [ ] modextravars = { - 'MPICH_CC':'icc', - 'MPICH_F77':'ifort', - 'MPICH_F90':'ifort', + 'MPICH_CC': 'icc', + 'MPICH_F77': 'ifort', + 'MPICH_F90': 'ifort', } moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/imkl/imkl-10.2.6.038-32bit.eb b/easybuild/easyconfigs/i/imkl/imkl-10.2.6.038-32bit.eb index 4619863d5f6fa7ed01867589d4e2ccc329137a7a..2312f4b3889a5dd8cb9fefcf2406c648e81fe10e 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-10.2.6.038-32bit.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-10.2.6.038-32bit.eb @@ -8,7 +8,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_p_%(version)s.tar.gz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-10.2.6.038.eb b/easybuild/easyconfigs/i/imkl/imkl-10.2.6.038.eb index a693a15b86e5bea1a74d8f001c0ca55265aa5f78..b1eb6ee6e39a4eb88b1bebf927538eb0614aa1c2 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-10.2.6.038.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-10.2.6.038.eb @@ -7,7 +7,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_p_%(version)s.tar.gz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-10.3.10.319.eb b/easybuild/easyconfigs/i/imkl/imkl-10.3.10.319.eb index b3d47b810d819ea6215aa3ac419b9787dae38bdc..91c64cfa0d5e70274c1d330775139846049a4c00 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-10.3.10.319.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-10.3.10.319.eb @@ -7,7 +7,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_%(version)s_intel64.tgz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361-MVAPICH2-1.9.eb b/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361-MVAPICH2-1.9.eb index 078c8848d8acf44b3b6f12d9bee16aa32ce0773e..4d5ef42fcf1ae19862198e6890807257f9e08ad7 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361-MVAPICH2-1.9.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361-MVAPICH2-1.9.eb @@ -6,7 +6,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, ext for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361-OpenMPI-1.6.3.eb b/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361-OpenMPI-1.6.3.eb index 725bb2b396fbafc7d4beb94cd82ea146f0c4fb69..2bd88ac625c46afa75b23783cd16177323c9645e 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361-OpenMPI-1.6.3.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361-OpenMPI-1.6.3.eb @@ -6,7 +6,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, ext for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361.eb b/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361.eb index 0db4c8f64f6c6056b4f60e2cbc0eba91bd806a6a..b8769ef805f7da0f9c00d64151c423d5b5d01b04 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-10.3.12.361.eb @@ -7,7 +7,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-10.3.6.233.eb b/easybuild/easyconfigs/i/imkl/imkl-10.3.6.233.eb index c3fb0d1e8e6395e28e82ca47fc659f2a77c6bfc4..b5b58cc1885370919e49fdb7da5a54164cf8788e 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-10.3.6.233.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-10.3.6.233.eb @@ -7,7 +7,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_%(version)s_intel64.tgz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.0.1.117.eb b/easybuild/easyconfigs/i/imkl/imkl-11.0.1.117.eb index 209f8143d8827a7dd885b295d02ad019628091a7..8adf971a63b6e0daa8529ac8eeab1d4ac589732d 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.0.1.117.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.0.1.117.eb @@ -7,7 +7,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.0.2.146.eb b/easybuild/easyconfigs/i/imkl/imkl-11.0.2.146.eb index 94a66c877fd17be0c8f8ba015b6f4d519638f436..ccd95b2a7ac92e3db34fd79f9d813a4f47c88b27 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.0.2.146.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.0.2.146.eb @@ -7,7 +7,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.0.3.163.eb b/easybuild/easyconfigs/i/imkl/imkl-11.0.3.163.eb index 14cee4947923aa4506f96de31f0cdd02fa7bd78f..8b97b3ff265166f10c5fac0f5854499a4144c1d9 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.0.3.163.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.0.3.163.eb @@ -7,7 +7,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.0.4.183.eb b/easybuild/easyconfigs/i/imkl/imkl-11.0.4.183.eb index 339abe07e2a548331a9dc404764c96c5c438b72f..98e5ffd25fb55b8a5289f64b0d79f61743c64c10 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.0.4.183.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.0.4.183.eb @@ -7,7 +7,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.0.5.192.eb b/easybuild/easyconfigs/i/imkl/imkl-11.0.5.192.eb index 5b2f5de9a8c79590be954a87f0a5a04ed1fad6dd..0fe1b14e46ecd70eecb2ac8446a47d8c0688d434 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.0.5.192.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.0.5.192.eb @@ -7,7 +7,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.0.080.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.0.080.eb index ca26f636cc8ff29112a43c276fdd0fab49f4bf5b..7b7f159547c27c6f4dba8d1e67410c708ddb1792 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.1.0.080.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.0.080.eb @@ -7,7 +7,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.1.106.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.1.106.eb index 6c2f677c6cf499b7e6cc79da525d4ad0ad99850c..cc9f1d89b5d1922fc0ab58e82a75f98c59dd4d5b 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.1.1.106.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.1.106.eb @@ -7,7 +7,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-2013.5.192-GCC-4.8.3.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-2013.5.192-GCC-4.8.3.eb index 716cd4b3dded05f3b681cb161d69e4289b4f64b8..3b9cb14613ed640f57ef0823ffa3bb005afc27dc 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-2013.5.192-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-2013.5.192-GCC-4.8.3.eb @@ -7,7 +7,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-GCC-4.8.3.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-GCC-4.8.3.eb index d1128e779927c19929a355da72ec7daf894a1dc3..4843fd2442624f5d51bf92e118acbad744d00de2 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-GCC-4.8.3.eb @@ -7,7 +7,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-OpenMPI-1.6.5.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-OpenMPI-1.6.5.eb index 7c293cda0abd7751a7fb4af5ef646884a0d64b9a..3ad520461af4c20ceb2643c59e868d02ce774cd7 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-OpenMPI-1.6.5.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144-OpenMPI-1.6.5.eb @@ -6,7 +6,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, ext for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144.eb index 03e70ed442f9e0a1156f3b1efa826b377b2915cc..47e59ba9fcd62671a8c558d951bed0558d1e4f9f 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144.eb @@ -7,7 +7,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.3.174.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.3.174.eb index 3f03a3bd36f01702d5463dee76c423f14469ece5..bd599cfe0d4df98d14fa27f7b33de0e9871f276f 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.1.3.174.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.3.174.eb @@ -7,7 +7,7 @@ description = """Intel Math Kernel Library is a library of highly optimized, applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['l_mkl_%(version)s.tgz'] diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.1.4.211-iompi-6.6.4.eb b/easybuild/easyconfigs/i/imkl/imkl-11.1.4.211-iompi-6.6.4.eb index c7ad8e1fbd6686dae36f62536b027b1f3f934ae7..11818df67591a35b760f64cc95a62a450baf4d7d 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.1.4.211-iompi-6.6.4.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.1.4.211-iompi-6.6.4.eb @@ -20,4 +20,3 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") moduleclass = 'numlib' - diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-ipsmpi-2014.12.eb b/easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-ipsmpi-2014.12.eb index a44565b87fc364da49b420300f5d42f4b198186b..83e7ad590dedc36f63a0e8969c9a80d014fceddf 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-ipsmpi-2014.12.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.2.1.133-ipsmpi-2014.12.eb @@ -1,12 +1,12 @@ name = 'imkl' -version = "11.2.1.133" +version = "11.2.1.133" homepage = 'http://software.intel.com/en-us/intel-mkl/' description = """Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" -toolchain = {'name': 'ipsmpi', 'version': '2014.12'} +toolchain = {'name': 'ipsmpi', 'version': '2014.12'} sources = ['l_mkl_%(version)s.tgz'] @@ -19,4 +19,3 @@ license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic interfaces = True moduleclass = 'numlib' - diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.0.109-iimpi-2016.00-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.0.109-iimpi-2016.00-GCC-4.9.3-2.25.eb index 3b5d9dbf2b2cd5e14e28c48ac529e24c3ef72a59..f295b509252320d7bfd2ebd0a0337b848e6bbbfc 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.0.109-iimpi-2016.00-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.0.109-iimpi-2016.00-GCC-4.9.3-2.25.eb @@ -16,7 +16,7 @@ checksums = ['47567e38801efe273b36b5250c759af7'] dontcreateinstalldir = 'True' -#license file +# license file import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25.eb index ea1d887cb59610d5f06376e6a357c9da0ba7005a..e40fb8448adef7a614579bc5a10a9b19c02fb5fa 100644 --- a/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-2016.01-GCC-4.9.3-2.25.eb @@ -16,7 +16,7 @@ checksums = ['b57ff502b5f97f2f783e4bbda7ce42b3'] dontcreateinstalldir = 'True' -#license file +# license file import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") @@ -34,5 +34,5 @@ postinstallcmds = [ ] modextravars = { - 'MKL_EXAMPLES' : '%(installdir)s/mkl/examples/', + 'MKL_EXAMPLES': '%(installdir)s/mkl/examples/', } diff --git a/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-8.1.5-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-8.1.5-GCC-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..de96c38b1596997999c83be982936497ffc4abcf --- /dev/null +++ b/easybuild/easyconfigs/i/imkl/imkl-11.3.1.150-iimpi-8.1.5-GCC-4.9.3-2.25.eb @@ -0,0 +1,22 @@ +name = 'imkl' +version = '11.3.1.150' + +homepage = 'http://software.intel.com/en-us/intel-mkl/' +description = """Intel Math Kernel Library is a library of highly optimized, + extensively threaded math routines for science, engineering, and financial + applications that require maximum performance. Core math functions include + BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.""" + +toolchain = {'name': 'iimpi', 'version': '8.1.5-GCC-4.9.3-2.25'} + +sources = ['l_mkl_%(version)s.tgz'] + +dontcreateinstalldir = 'True' + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") + +interfaces = True + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/i/impi/impi-3.2.2.006.eb b/easybuild/easyconfigs/i/impi/impi-3.2.2.006.eb index e0aa55d8e10dfa8996f32c5f53af1f9ddef1e502..6a204cb330d2e870733ddfaca1420e2ee16b8d31 100644 --- a/easybuild/easyconfigs/i/impi/impi-3.2.2.006.eb +++ b/easybuild/easyconfigs/i/impi/impi-3.2.2.006.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.0.0.028-32bit.eb b/easybuild/easyconfigs/i/impi/impi-4.0.0.028-32bit.eb index ed9f544efda8e76fcb5ddb1b2629a558dd400850..4c78a146fe847df2693187cb1092e41c7ef25fb3 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.0.0.028-32bit.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.0.0.028-32bit.eb @@ -20,6 +20,6 @@ license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic m32 = True # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.0.0.028-iccifort-11.1.073-32bit.eb b/easybuild/easyconfigs/i/impi/impi-4.0.0.028-iccifort-11.1.073-32bit.eb index cdfb37e60d4dcc453dc912194f3f6ad523607e56..08072ed0bafbdcddfb79585810e77be1c4eab040 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.0.0.028-iccifort-11.1.073-32bit.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.0.0.028-iccifort-11.1.073-32bit.eb @@ -19,6 +19,6 @@ license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic m32 = True # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.0.0.028-iccifort-11.1.073.eb b/easybuild/easyconfigs/i/impi/impi-4.0.0.028-iccifort-11.1.073.eb index 05a3dcd5242f446c626d51dca9270a1528e5967d..511d688de0feb41e1101ccd0df1151c7903fb328 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.0.0.028-iccifort-11.1.073.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.0.0.028-iccifort-11.1.073.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.0.0.028.eb b/easybuild/easyconfigs/i/impi/impi-4.0.0.028.eb index 6a5c58b965a5e6f8fdcc6f86717eb6b1367160cc..c44ccfe556db5081717276ddbd2b3c0003a683c0 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.0.0.028.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.0.0.028.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.0.2.003-iccifort-2011.10.319.eb b/easybuild/easyconfigs/i/impi/impi-4.0.2.003-iccifort-2011.10.319.eb index 32c938b850a847594f09070fa4304b9cc580d9d8..ed02f9aae2af3fc2fc7005c98e611678be65ee05 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.0.2.003-iccifort-2011.10.319.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.0.2.003-iccifort-2011.10.319.eb @@ -19,6 +19,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.0.2.003-iccifort-2011.6.233.eb b/easybuild/easyconfigs/i/impi/impi-4.0.2.003-iccifort-2011.6.233.eb index c9a73b1fbdf5bfe297bb1ba43aa370ef9a9d8f04..74988d9060a5be8864075781a9ed4b752430bbf2 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.0.2.003-iccifort-2011.6.233.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.0.2.003-iccifort-2011.6.233.eb @@ -19,6 +19,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.0.2.003.eb b/easybuild/easyconfigs/i/impi/impi-4.0.2.003.eb index 321fcf953c4ddb596d7d4ee1153ff88ef870ec72..001ee2403f61fcd804fdb3933913630e568640f0 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.0.2.003.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.0.2.003.eb @@ -19,6 +19,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.0.027-iccifort-2011.13.367.eb b/easybuild/easyconfigs/i/impi/impi-4.1.0.027-iccifort-2011.13.367.eb index 03f1826816789abec94c4bfb56363d4d2092dd87..8fec7946395f0c0fb0c12b25b36e1241063251af 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.0.027-iccifort-2011.13.367.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.0.027-iccifort-2011.13.367.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.0.027-iccifort-2013.1.117.eb b/easybuild/easyconfigs/i/impi/impi-4.1.0.027-iccifort-2013.1.117.eb index 61d1d122580027cebc3c781bc12045d3d7b8fdbf..1aa67b0e91611a6500603e4483159d1eb18e6552 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.0.027-iccifort-2013.1.117.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.0.027-iccifort-2013.1.117.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.0.027.eb b/easybuild/easyconfigs/i/impi/impi-4.1.0.027.eb index 52c561052296eb08d575e13fbc256fdd80701b13..6178aa2f65b40ccc344f54fa9a71ae984b5f688f 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.0.027.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.0.027.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.2.146.eb b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.2.146.eb index 10206cc86fdb1523153e1e13955db7e332b7b661..99cabee972a90f554bd776a148892b405c045992 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.2.146.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.2.146.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.3.163.eb b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.3.163.eb index 14cfad4a95fb037c70d2147f2d09944e757aa95a..c4adbe0ae3d04e6cdf7bcda3cd6a9a379e5aad0d 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.3.163.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.3.163.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.4.183.eb b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.4.183.eb index 5e54731d6a6a248dc9a4b6c9fbdedf5be7894bdb..2121a1a6d970db3d7ee1fce8ef5217395e8ee332 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.4.183.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.0.030-iccifort-2013.4.183.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.0.030.eb b/easybuild/easyconfigs/i/impi/impi-4.1.0.030.eb index 9d7dcdffc597e7e30d6c66ce91ef1a9533fe3598..92c9a61b43d435239cb6842062493ce7d727e4c6 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.0.030.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.0.030.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192-GCC-4.8.3.eb b/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192-GCC-4.8.3.eb index 5b383c2276ae68082139398ec4593e8c4d9d8eb6..3cd6a1805520e1a3a56ba8d18e4c4b9f5f9d4afa 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192-GCC-4.8.3.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192.eb b/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192.eb index 2aeefc2cd908f2fc832088258ea7c22392ae26f7..22f06996499109fac8f8d176334110a37ac5f868 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013.5.192.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013_sp1.0.080.eb b/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013_sp1.0.080.eb index 6f91af21b338e5394291a178c67501fcb2d25890..6357cd563473132123106586748db5899755fdd7 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013_sp1.0.080.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.1.036-iccifort-2013_sp1.0.080.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.1.036.eb b/easybuild/easyconfigs/i/impi/impi-4.1.1.036.eb index 48ea7b9ce580731d0df7fbddfafea24e70b3c343..922aa7934403f90b408e5e5dc91e7a8ffe870e7b 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.1.036.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.1.036.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.2.040.eb b/easybuild/easyconfigs/i/impi/impi-4.1.2.040.eb index d88a37c91f84cbb1f2dfd6a3c71802e669018c97..b7639d24d107fa60b148b16ec7dc3df2d1c2a8e3 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.2.040.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.2.040.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.045-iccifort-2013_sp1.1.106.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.045-iccifort-2013_sp1.1.106.eb index 048251c331ae1486d20bb8c2118c43ae41cb1370..21ed19633fa70499ca256135c91eb55a05258b72 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.3.045-iccifort-2013_sp1.1.106.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.045-iccifort-2013_sp1.1.106.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.045.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.045.eb index 5843dfe20093c8bf455ba0f90ed8771bf58cf331..da5a2ab9be42e9c5ffb09be5545117290b39fbdc 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.3.045.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.045.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-GCC-4.8.3.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-GCC-4.8.3.eb index 9e56e74b2d2ec897605056ddb6cb385851aa4d08..9e61812d8f1b1a77516a1fbccb6a50b3651e1603 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-GCC-4.8.3.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013.5.192-GCC-4.8.3.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013.5.192-GCC-4.8.3.eb index 07bd2d77cd46d9a9b7a3a849390951f0e43b1dd6..9a3879ee53e8476716666986083a725186585a87 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013.5.192-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013.5.192-GCC-4.8.3.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.2.144.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.2.144.eb index d3e34f99af61e979bb818acc023c55c082dda51a..5e4968df608158a37166339daf1984cbdbc3d6bf 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.2.144.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.2.144.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.3.174.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.3.174.eb index 54e5d17b0fa8386d395426ea23675c041b970f49..033aabd2c035a282e24c57c1e2fb931608e43200 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.3.174.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.049-iccifort-2013_sp1.3.174.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-4.1.3.049.eb b/easybuild/easyconfigs/i/impi/impi-4.1.3.049.eb index 23f4c4874467e9e694bd6c0eb221ad69ebad8ed9..43cd007ba43bd6bf2411ba2ebcb287cdb0c02fb0 100644 --- a/easybuild/easyconfigs/i/impi/impi-4.1.3.049.eb +++ b/easybuild/easyconfigs/i/impi/impi-4.1.3.049.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090-GCC-4.9.2.eb b/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090-GCC-4.9.2.eb index 57ed02ab9ad3369924f5c137e45a2a8bd90656ce..28ece27457b57d106e842e82d4eec2d87bfa5a23 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090-GCC-4.9.2.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090.eb b/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090.eb index 107a4290a36bea440320068c53e4b04153b1c1b0..6f2bcda1cb37274a73384bc0acd4bd9231cfeb45 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.0.1.035-iccifort-2015.0.090.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.1.133-GCC-4.9.2.eb index 85451943cd1eda1d79b720ed736594ff0b2cccda..a9d198b99f773ec4b52ff95b7a79b82ff96cef2b 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.1.133-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.0.2.044-iccifort-2015.1.133-GCC-4.9.2.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-GCC-4.9.3.eb b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-GCC-4.9.3.eb index 0272634c212fa9cef9a41aa0a41f741bda753e47..25f7950baeafb7667c77626ef2db9e323e0f0902 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-GCC-4.9.3.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-GCC-4.9.3.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.2.164-GCC-4.9.2.eb b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.2.164-GCC-4.9.2.eb index 0bd01e5fe2b5c8ede0ae36fc473877c2a4d00451..df72fa53c0c27b8446a3db9f8662a14bc3761102 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.2.164-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.2.164-GCC-4.9.2.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187-GNU-4.9.3-2.25.eb index 7b891134eb4bc5a82bbe4f0d3fa3bef2c6af606e..4b32c5dbb286f49d4bd015024ddc00aadbef27a2 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187-GNU-4.9.3-2.25.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187.eb b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187.eb index baf8e132f9ad902849d92abc719d695cd1961a30..c247bd8cc678cf1dc8255a6a5a30c563e27c49d6 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.0.3.048-iccifort-2015.3.187.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.0.079-iccifort-2015.3.187.eb b/easybuild/easyconfigs/i/impi/impi-5.1.0.079-iccifort-2015.3.187.eb index 10fe208f63220697300a147f9c364309effcb959..362bb90b08c99b2bc0fc95ca8f6ee9c928acffc2 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.0.079-iccifort-2015.3.187.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.0.079-iccifort-2015.3.187.eb @@ -18,6 +18,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2015.5.223-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2015.5.223-GCC-4.9.3-2.25.eb index 3c0b578af02eba98840d1e644acf32c90e40cc6a..9e343efe2eef59f2bed2040ef5b44c3426453923 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2015.5.223-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2015.5.223-GCC-4.9.3-2.25.eb @@ -17,6 +17,6 @@ import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") # set up all the mpi wrappers to work as expected with intel compilers (e.g. mpicc wraps icc not the default gcc) -# set_mpi_wrappers_all = 'True' +# set_mpi_wrappers_all = 'True' moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25.eb index 73e4fbb0275023c75eae0ccb11ea76399fc033f8..da4a9937801dbeff8aa6dfdaa45c8dae4c7a19da 100644 --- a/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/i/impi/impi-5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25.eb @@ -19,6 +19,9 @@ dontcreateinstalldir = 'True' import os license_file = os.path.join(os.getenv('HOME'), "licenses", "intel", "license.lic") +# set up all the mpi commands to default to intel compilers +# set_mpi_wrappers_all = 'True' + moduleclass = 'mpi' postinstallcmds = [ diff --git a/easybuild/easyconfigs/i/inputproto/inputproto-2.3.1-intel-2016a.eb b/easybuild/easyconfigs/i/inputproto/inputproto-2.3.1-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..323816dd0b58c3ada562ced00e0ad65885aeced6 --- /dev/null +++ b/easybuild/easyconfigs/i/inputproto/inputproto-2.3.1-intel-2016a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'inputproto' +version = '2.3.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org InputProto protocol headers.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in ['XI2.h', 'XI.h', 'XIproto.h', 'XI2proto.h']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/i/intel-para/intel-para-2014.12.eb b/easybuild/easyconfigs/i/intel-para/intel-para-2014.12.eb index 071bb1cdbbc69ada362a71de4e46bca58b3056e8..d41e8ec2507cd7f500488d0f9bc8d5db9c4a86ba 100644 --- a/easybuild/easyconfigs/i/intel-para/intel-para-2014.12.eb +++ b/easybuild/easyconfigs/i/intel-para/intel-para-2014.12.eb @@ -25,4 +25,3 @@ dependencies = [ moduleclass = 'toolchain' - diff --git a/easybuild/easyconfigs/i/intel/intel-2016.00.eb b/easybuild/easyconfigs/i/intel/intel-2016.00.eb index 0b62fdc0f41ff35029660f42a82e772c56ca07e8..241463337ade35a799291414d6639fae0179ae29 100644 --- a/easybuild/easyconfigs/i/intel/intel-2016.00.eb +++ b/easybuild/easyconfigs/i/intel/intel-2016.00.eb @@ -19,7 +19,7 @@ dependencies = [ ('icc', compver, gccsuff), ('ifort', compver, gccsuff), ('impi', '5.1.1.109', '', ('iccifort', '%s%s' % (compver, gccsuff))), - ('imkl', '11.3.0.109', '', ('iimpi', '%s%s' % (version,gccsuff))), + ('imkl', '11.3.0.109', '', ('iimpi', '%s%s' % (version, gccsuff))), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/intel/intel-2016.01.eb b/easybuild/easyconfigs/i/intel/intel-2016.01.eb index 766d5b1fdaf706af4a33e19bca11f076567966e5..37f96fa0142f3ec8c62dccdc39faa7e88ad2c41c 100644 --- a/easybuild/easyconfigs/i/intel/intel-2016.01.eb +++ b/easybuild/easyconfigs/i/intel/intel-2016.01.eb @@ -19,7 +19,7 @@ dependencies = [ ('icc', compver, gccsuff), ('ifort', compver, gccsuff), ('impi', '5.1.2.150', '', ('iccifort', '%s%s' % (compver, gccsuff))), - ('imkl', '11.3.1.150', '', ('iimpi', '%s%s' % (version,gccsuff))), + ('imkl', '11.3.1.150', '', ('iimpi', '%s%s' % (version, gccsuff))), ] moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/intel/intel-2016a.eb b/easybuild/easyconfigs/i/intel/intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..c858c20f5337f66f7869cbd5b86943700d454df2 --- /dev/null +++ b/easybuild/easyconfigs/i/intel/intel-2016a.eb @@ -0,0 +1,21 @@ +easyblock = 'Toolchain' + +name = 'intel' +version = '2016a' + +homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' +description = """Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +compver = '2016.1.150' +gccsuff = '-GCC-4.9.3-2.25' + +dependencies = [ + ('icc', compver, gccsuff), + ('ifort', compver, gccsuff), + ('impi', '5.1.2.150', '', ('iccifort', '%s%s' % (compver, gccsuff))), + ('imkl', '11.3.1.150', '', ('iimpi', '8.1.5%s' % gccsuff)), +] + +moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/intltool/intltool-0.51.0-intel-2015b.eb b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-intel-2015b.eb index 42ab6e143c6d366304bf4781e43d4a79cb77fba3..722616eb78e66e70a7b2847a2e89d91903d19518 100644 --- a/easybuild/easyconfigs/i/intltool/intltool-0.51.0-intel-2015b.eb +++ b/easybuild/easyconfigs/i/intltool/intltool-0.51.0-intel-2015b.eb @@ -9,7 +9,7 @@ description = """intltool is a set of tools to centralize translation of toolchain = {'name': 'intel', 'version': '2015b'} -source_urls = ['http://launchpad.net/intltool/trunk/%(version)s/+download/'] +source_urls = ['http://launchpad.net/intltool/trunk/%(version)s/+download/'] sources = [SOURCE_TAR_GZ] dependencies = [ diff --git a/easybuild/easyconfigs/i/iompi/iompi-2015.01.eb b/easybuild/easyconfigs/i/iompi/iompi-2015.01.eb index 6392c4027f4719c8f2a5a4b2d5ee861dbd16e3da..5bd039e031d1d9b81bd68d8302836b7057393d64 100644 --- a/easybuild/easyconfigs/i/iompi/iompi-2015.01.eb +++ b/easybuild/easyconfigs/i/iompi/iompi-2015.01.eb @@ -17,4 +17,3 @@ dependencies = [ ] moduleclass = 'toolchain' - diff --git a/easybuild/easyconfigs/i/iompi/iompi-2015.02.eb b/easybuild/easyconfigs/i/iompi/iompi-2015.02.eb index 698ba1f804b44960f8d2b7bf77fc35ae4a60f9a6..726413e1620d9f00a0ec6d0deefcfc7db9a32de6 100644 --- a/easybuild/easyconfigs/i/iompi/iompi-2015.02.eb +++ b/easybuild/easyconfigs/i/iompi/iompi-2015.02.eb @@ -17,4 +17,3 @@ dependencies = [ ] moduleclass = 'toolchain' - diff --git a/easybuild/easyconfigs/i/iompi/iompi-2015.03.eb b/easybuild/easyconfigs/i/iompi/iompi-2015.03.eb index 539222425a997343fcd105f2de49c9e2d9c95676..83b42beffd48b78817872743ad564905d448149e 100644 --- a/easybuild/easyconfigs/i/iompi/iompi-2015.03.eb +++ b/easybuild/easyconfigs/i/iompi/iompi-2015.03.eb @@ -17,4 +17,3 @@ dependencies = [ ] moduleclass = 'toolchain' - diff --git a/easybuild/easyconfigs/i/iompi/iompi-6.6.4-no-OFED.eb b/easybuild/easyconfigs/i/iompi/iompi-6.6.4-no-OFED.eb index 091224afc0d8a6d35538bf8112cf2351d6ccc296..50058717bb4d9d496adee575f9791e4514aa0732 100644 --- a/easybuild/easyconfigs/i/iompi/iompi-6.6.4-no-OFED.eb +++ b/easybuild/easyconfigs/i/iompi/iompi-6.6.4-no-OFED.eb @@ -20,4 +20,3 @@ dependencies = [ ] moduleclass = 'toolchain' - diff --git a/easybuild/easyconfigs/i/iompi/iompi-6.6.4.eb b/easybuild/easyconfigs/i/iompi/iompi-6.6.4.eb index 8dccca825e5820df9f580374a15a3520eb1e7f42..a2a368a96a6a6435f4faa43bd56a2cffe192368c 100644 --- a/easybuild/easyconfigs/i/iompi/iompi-6.6.4.eb +++ b/easybuild/easyconfigs/i/iompi/iompi-6.6.4.eb @@ -19,4 +19,3 @@ dependencies = [ ] moduleclass = 'toolchain' - diff --git a/easybuild/easyconfigs/i/ipsmpi/ipsmpi-2014.12.eb b/easybuild/easyconfigs/i/ipsmpi/ipsmpi-2014.12.eb index 4a33e11b3a0cab0b4513204c967976c4a2b80e8d..6aff711eb4f8b55b4c97590926638194022952af 100644 --- a/easybuild/easyconfigs/i/ipsmpi/ipsmpi-2014.12.eb +++ b/easybuild/easyconfigs/i/ipsmpi/ipsmpi-2014.12.eb @@ -24,4 +24,3 @@ dependencies = [ ] moduleclass = 'toolchain' - diff --git a/easybuild/easyconfigs/i/iqacml/iqacml-3.7.3.eb b/easybuild/easyconfigs/i/iqacml/iqacml-3.7.3.eb index 09d75e1ad88d2d537f873d65cafb8c63109e8ed4..14df692f5cae49e079933f430e67c32fb8905a4d 100644 --- a/easybuild/easyconfigs/i/iqacml/iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/i/iqacml/iqacml-3.7.3.eb @@ -34,9 +34,9 @@ dependencies = [ ] modextravars = { - 'MPICH_CC':'icc', - 'MPICH_F77':'ifort', - 'MPICH_F90':'ifort', + 'MPICH_CC': 'icc', + 'MPICH_F77': 'ifort', + 'MPICH_F90': 'ifort', } moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/iqacml/iqacml-4.4.13.eb b/easybuild/easyconfigs/i/iqacml/iqacml-4.4.13.eb index 3027178ee50bd728636a2e047c111cc1c71583c1..1c12d8bcc8d2c9931d723308453e0ff45d6e2e4f 100644 --- a/easybuild/easyconfigs/i/iqacml/iqacml-4.4.13.eb +++ b/easybuild/easyconfigs/i/iqacml/iqacml-4.4.13.eb @@ -6,7 +6,7 @@ version = '4.4.13' homepage = 'http://software.intel.com/en-us/intel-cluster-toolkit-compiler/' description = """Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, QLogic MPI and AMD Core Math Library (ACML).""" -toolchain = {'name':'dummy','version':'dummy'} +toolchain = {'name': 'dummy', 'version': 'dummy'} compv = '2011.13.367' @@ -19,7 +19,7 @@ tcname = 'iiqmpi' tcver = '4.4.13' tc = (tcname, tcver) -## deps for interface build +# deps for interface build dependencies = [ ('icc', compv), ('ifort', compv), @@ -31,8 +31,8 @@ dependencies = [ modextravars = { 'MPICH_CC': 'icc', - 'MPICH_F77':'ifort', - 'MPICH_F90':'ifort' + 'MPICH_F77': 'ifort', + 'MPICH_F90': 'ifort' } moduleclass = 'toolchain' diff --git a/easybuild/easyconfigs/i/ispc/ispc-1.6.0.eb b/easybuild/easyconfigs/i/ispc/ispc-1.6.0.eb index 5f9a44b8c20215b44e09a24f5c7d5313391da265..0e49c82636cdaebede9fc57366267411ffc97116 100644 --- a/easybuild/easyconfigs/i/ispc/ispc-1.6.0.eb +++ b/easybuild/easyconfigs/i/ispc/ispc-1.6.0.eb @@ -17,7 +17,7 @@ sources = ['ispc-v%(version)s-linux.tar.gz'] source_urls = [('http://sourceforge.net/projects/ispcmirror/files/v%(version)s', 'download')] sanity_check_paths = { - 'files': ["ispc"], + 'files': ["ispc"], 'dirs': [] } diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb index f0fdf4369d997e32351d4995530249abc529fdd0..d0c11088720ecb2ffd4e9ae566d9cc388e72a6a1 100644 --- a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-goolf-1.4.10.eb @@ -20,7 +20,7 @@ sources = [SOURCE_TAR_GZ] configopts = ' --with-blas="-lopenblas" --with-lapack="-llapack" ' sanity_check_paths = { - 'files': ["bin/jags", "libexec/jags-terminal", "lib/libjags.so"], + 'files': ["bin/jags", "libexec/jags-terminal", "lib/libjags.%s" % SHLIB_EXT], 'dirs': [] } @@ -30,4 +30,3 @@ modextrapaths = { } moduleclass = 'math' - diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb index 9b984fa0fd1b1a1dcc2cf5e717aa663035ea8379..9e1ed006d540b8c1df786dfc450dacaa29647008 100644 --- a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-ictce-6.2.5.eb @@ -20,7 +20,7 @@ sources = [SOURCE_TAR_GZ] configopts = ' --with-blas="-lmkl" --with-lapack="-lmkl" ' sanity_check_paths = { - 'files': ["bin/jags", "libexec/jags-terminal", "lib/libjags.so"], + 'files': ["bin/jags", "libexec/jags-terminal", "lib/libjags.%s" % SHLIB_EXT], 'dirs': [] } @@ -30,4 +30,3 @@ modextrapaths = { } moduleclass = 'math' - diff --git a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb index a19a5f06c5a0269ab40104e8fcaa55dfbc94662a..76755f474c05c93b67b16766b62b0a7bc0df9870 100644 --- a/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb +++ b/easybuild/easyconfigs/j/JAGS/JAGS-3.4.0-intel-2014b.eb @@ -20,7 +20,7 @@ sources = [SOURCE_TAR_GZ] configopts = ' --with-blas="-lmkl" --with-lapack="-lmkl" ' sanity_check_paths = { - 'files': ["bin/jags", "libexec/jags-terminal", "lib/libjags.so"], + 'files': ["bin/jags", "libexec/jags-terminal", "lib/libjags.%s" % SHLIB_EXT], 'dirs': [] } @@ -30,4 +30,3 @@ modextrapaths = { } moduleclass = 'math' - diff --git a/easybuild/easyconfigs/j/JUBE/JUBE-2.0.3.eb b/easybuild/easyconfigs/j/JUBE/JUBE-2.0.3.eb index 903be570eba76b8d092434cb05f7d7991af2b900..9ff6f83aaf37d802da09b8d38e21dbb3abf005b0 100644 --- a/easybuild/easyconfigs/j/JUBE/JUBE-2.0.3.eb +++ b/easybuild/easyconfigs/j/JUBE/JUBE-2.0.3.eb @@ -16,8 +16,8 @@ checksums = ['8afc5e3959752e7541f5f59b07fd1e1c'] options = {'modulename': 'jube2'} sanity_check_paths = { - 'files': ['bin/jube'], - 'dirs': [] + 'files': ['bin/jube'], + 'dirs': [] } moduleclass = 'tools' diff --git a/easybuild/easyconfigs/j/JUBE/JUBE-2.0.4.eb b/easybuild/easyconfigs/j/JUBE/JUBE-2.0.4.eb index 545b5785eada40b34061adf8097d4741040ecd91..6a73bae83a701fe5eba9f5b519bb6a56e24077cc 100644 --- a/easybuild/easyconfigs/j/JUBE/JUBE-2.0.4.eb +++ b/easybuild/easyconfigs/j/JUBE/JUBE-2.0.4.eb @@ -16,8 +16,8 @@ checksums = ['96a7946d38d678b25ba4bbd539482a14'] options = {'modulename': 'jube2'} sanity_check_paths = { - 'files': ['bin/jube'], - 'dirs': [] + 'files': ['bin/jube'], + 'dirs': [] } moduleclass = 'tools' diff --git a/easybuild/easyconfigs/j/JUBE/JUBE-2.0.5.eb b/easybuild/easyconfigs/j/JUBE/JUBE-2.0.5.eb index b270f53d57e3e3d997743f6207a0f4a5e01843dd..0d36653ae0e25dc85f5e088ebee83c353e64a267 100644 --- a/easybuild/easyconfigs/j/JUBE/JUBE-2.0.5.eb +++ b/easybuild/easyconfigs/j/JUBE/JUBE-2.0.5.eb @@ -16,8 +16,8 @@ checksums = ['f506e9f39898af3d7456890ba219ab90'] options = {'modulename': 'jube2'} sanity_check_paths = { - 'files': ['bin/jube'], - 'dirs': [] + 'files': ['bin/jube'], + 'dirs': [] } moduleclass = 'tools' diff --git a/easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_75.eb b/easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_75.eb new file mode 100644 index 0000000000000000000000000000000000000000..73ee3252a1a7b1581ca2fa1f4b0bd7bee4fc12c7 --- /dev/null +++ b/easybuild/easyconfigs/j/JUnit/JUnit-4.11-Java-1.7.0_75.eb @@ -0,0 +1,25 @@ +easyblock = 'JAR' + +name = 'JUnit' +version = '4.11' + +homepage = 'http://sourceforge.net/projects/junit' +description = """A programmer-oriented testing framework for Java.""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['%(namelower)s-%(version)s.jar'] +source_urls = ['http://search.maven.org/remotecontent?filepath=junit/junit/%(version)s/'] + +java = 'Java' +javaver = '1.7.0_75' +versionsuffix = '-%s-%s' % (java, javaver) + +dependencies = [(java, javaver)] + +sanity_check_paths = { + 'files': sources, + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/j/JUnit/JUnit-4.12-Java-1.7.0_80.eb b/easybuild/easyconfigs/j/JUnit/JUnit-4.12-Java-1.7.0_80.eb new file mode 100644 index 0000000000000000000000000000000000000000..c0074dc071dc8fe7f7dd5855ccfca431e6fb26c6 --- /dev/null +++ b/easybuild/easyconfigs/j/JUnit/JUnit-4.12-Java-1.7.0_80.eb @@ -0,0 +1,22 @@ +easyblock = 'JAR' + +name = 'JUnit' +version = '4.12' +versionsuffix = '-Java-%(javaver)s' + +homepage = 'http://sourceforge.net/projects/junit' +description = """A programmer-oriented testing framework for Java.""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['%(namelower)s-%(version)s.jar'] +source_urls = ['http://search.maven.org/remotecontent?filepath=junit/junit/%(version)s/'] + +dependencies = [('Java', '1.7.0_80')] + +sanity_check_paths = { + 'files': sources, + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/j/JUnit/JUnit-4.12-Java-1.8.0_66.eb b/easybuild/easyconfigs/j/JUnit/JUnit-4.12-Java-1.8.0_66.eb new file mode 100644 index 0000000000000000000000000000000000000000..5ad39de4e08ad0bedad45beee7507fe9af698ccf --- /dev/null +++ b/easybuild/easyconfigs/j/JUnit/JUnit-4.12-Java-1.8.0_66.eb @@ -0,0 +1,25 @@ +easyblock = 'JAR' + +name = 'JUnit' +version = '4.12' + +homepage = 'http://sourceforge.net/projects/junit' +description = """A programmer-oriented testing framework for Java.""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['%(namelower)s-%(version)s.jar'] +source_urls = ['http://search.maven.org/remotecontent?filepath=junit/junit/%(version)s/'] + +java = 'Java' +javaver = '1.8.0_66' +versionsuffix = '-%s-%s' % (java, javaver) + +dependencies = [(java, javaver)] + +sanity_check_paths = { + 'files': sources, + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/j/Jansson/Jansson-2.5-gcccuda-2.6.10.eb b/easybuild/easyconfigs/j/Jansson/Jansson-2.5-gcccuda-2.6.10.eb index d889b3d0b2cfe510b836ecf74b145984749e0bad..949fa049839f1fa4544ce14085451293ae86c09e 100644 --- a/easybuild/easyconfigs/j/Jansson/Jansson-2.5-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/j/Jansson/Jansson-2.5-gcccuda-2.6.10.eb @@ -13,7 +13,7 @@ description = """Jansson is a C library for encoding, decoding and manipulating * Extensive test suite""" toolchain = {'name': 'gcccuda', 'version': '2.6.10'} - + # fi. https://github.com/akheron/jansson/archive/2.5.zip source_urls = ['https://github.com/akheron/jansson/archive/'] sources = ['%(version)s.tar.gz'] diff --git a/easybuild/easyconfigs/j/Jansson/Jansson-2.6-GCC-4.8.3.eb b/easybuild/easyconfigs/j/Jansson/Jansson-2.6-GCC-4.8.3.eb index 0803b327c8a29a3e70bd02f80eab3d6037a97aa0..6da2045abd99ed7c0c227886d2f9c0e8222de5fa 100644 --- a/easybuild/easyconfigs/j/Jansson/Jansson-2.6-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/j/Jansson/Jansson-2.6-GCC-4.8.3.eb @@ -13,7 +13,7 @@ description = """Jansson is a C library for encoding, decoding and manipulating * Extensive test suite""" toolchain = {'name': 'GCC', 'version': '4.8.3'} - + # fi. https://github.com/akheron/jansson/archive/2.5.zip source_urls = ['https://github.com/akheron/jansson/archive/'] sources = ['%(version)s.tar.gz'] diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-2015.06-XC.eb similarity index 90% rename from easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.1.29.eb rename to easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-2015.06-XC.eb index feca7c584a414ef52eb3b8880a6fd04cf646dc54..057b6423c3e3539141a6b95ce97c57bba6bcfaa1 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-2015.06-XC.eb @@ -7,7 +7,7 @@ homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' description = """The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} toolchainopts = {'pic': True} sources = [SOURCELOWER_ZIP] diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-2015.11-XC.eb similarity index 90% rename from easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.25.eb rename to easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-2015.11-XC.eb index 606c94876ce68c925106b0330656cf55463dd8ca..b3d235faba5503d382fbb74229d517b70325e45c 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-2015.11-XC.eb @@ -7,7 +7,7 @@ homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' description = """The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} toolchainopts = {'pic': True} sources = [SOURCELOWER_ZIP] diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.40.eb deleted file mode 100644 index cef32fd43d8333a8283e01e55c21ce7eeeff8cb1..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-CrayGNU-5.2.40.eb +++ /dev/null @@ -1,21 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'JasPer' -version = '1.900.1' - -homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' -description = """The JasPer Project is an open-source initiative to provide a free - software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.""" - -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} -toolchainopts = {'pic': True} - -sources = [SOURCELOWER_ZIP] -source_urls = ['http://www.ece.uvic.ca/~frodo/jasper/software/'] - -sanity_check_paths = { - 'files': ["bin/jasper", "lib/libjasper.a"], - 'dirs': ["include"], -} - -moduleclass = 'vis' diff --git a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.5.14.eb b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.5.14.eb index e398d414f130934f827046cc1f3801dc86df059e..8d3aa6f5feb82fd109aac7d0a0bc8ab035ac82d6 100644 --- a/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/j/JasPer/JasPer-1.900.1-goolf-1.5.14.eb @@ -6,7 +6,7 @@ version = '1.900.1' homepage = 'http://www.ece.uvic.ca/~frodo/jasper/' description = "gzip (GNU zip) is a popular data compression program as a replacement for compress" -toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchain = {'name': 'goolf', 'version': '1.5.14'} toolchainopts = {'pic': True} sources = [SOURCELOWER_ZIP] diff --git a/easybuild/easyconfigs/j/Java/Java-1.8.0_72.eb b/easybuild/easyconfigs/j/Java/Java-1.8.0_72.eb new file mode 100644 index 0000000000000000000000000000000000000000..9d370ddcef09f879c99ab2f5f57c1107c5332edf --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.8.0_72.eb @@ -0,0 +1,15 @@ +name = 'Java' +version = "1.8.0_72" + +homepage = 'http://java.com/' +description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/j/Java/Java-1.8.0_74.eb b/easybuild/easyconfigs/j/Java/Java-1.8.0_74.eb new file mode 100644 index 0000000000000000000000000000000000000000..c9ef30b97eeb95921f0e5d799bfc96b67d61b97f --- /dev/null +++ b/easybuild/easyconfigs/j/Java/Java-1.8.0_74.eb @@ -0,0 +1,15 @@ +name = 'Java' +version = '1.8.0_74' + +homepage = 'http://java.com/' +description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy + Java applications on desktops and servers.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download the tar.gz directly from http://www.oracle.com/technetwork/java/javase/downloads/index.html +(vp, vs) = version.split('_') +altver = '%su%s' % (vp.split('.')[1], vs) +sources = ['jdk-%s-linux-x64.tar.gz' % altver] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-foss-2015b.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..ff49f091da98425a8b32389beb028f8a42dacf73 --- /dev/null +++ b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.2.4-foss-2015b.eb @@ -0,0 +1,32 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +easyblock = 'ConfigureMake' + +name = 'Jellyfish' +version = '2.2.4' + +homepage = 'http://www.genome.umd.edu/jellyfish.html' +description = """ Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = ['https://github.com/gmarcais/Jellyfish/releases/download/v%(version)s'] +sources = [SOURCELOWER_TAR_GZ] + +parallel = 1 + +# The tests for the Bloom filter are statistical tests and can randomly fail, they actually don't make a lot of sense +runtest = "check GTEST_FILTER=-'*Bloom*'" + +postinstallcmds = ["cp config.h %(installdir)s/include/%(namelower)s-%(version)s/%(namelower)s/"] + +sanity_check_paths = { + 'files': ['bin/jellyfish'], + 'dirs': [] +} + +modextrapaths = {'CPATH': 'include/%(namelower)s-%(version)s'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 46c4f977e8c60159001cb4a9dc1ecdf5084be5f3..5d9c1fff84ad74918c40f4680ba46f8bd52f86e0 100644 --- a/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -18,16 +18,16 @@ pythonversion = "2.7.3" versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('setuptools', '0.6c11', versionsuffix) - ] + (python, pythonversion), + ('setuptools', '0.6c11', versionsuffix) +] py_short_ver = ".".join(pythonversion.split(".")[0:2]) pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) sanity_check_paths = { - 'files': [], - 'dirs': ["%s-%s-py%s.egg" % (pylibdir, version, py_short_ver)] - } + 'files': [], + 'dirs': ["%s-%s-py%s.egg" % (pylibdir, version, py_short_ver)] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-goolf-1.4.10-Python-2.7.3.eb index e37ffbc4e200b2442519fcfb932711f027575f65..2e7f9bf5822285fb1651c654559bc05365e1a4c8 100644 --- a/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-goolf-1.4.10-Python-2.7.3.eb @@ -17,16 +17,16 @@ pythonversion = "2.7.3" versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('setuptools', '0.6c11', versionsuffix) - ] + (python, pythonversion), + ('setuptools', '0.6c11', versionsuffix) +] py_short_ver = ".".join(pythonversion.split(".")[0:2]) pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) sanity_check_paths = { - 'files': [], - 'dirs': ["%s-%s-py%s.egg" % (pylibdir, version, py_short_ver)] - } + 'files': [], + 'dirs': ["%s-%s-py%s.egg" % (pylibdir, version, py_short_ver)] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-ictce-4.0.6-Python-2.7.3.eb index 191856a900b64cc36bb0f071978369ac2e9650a3..6ac06a966d290969bd24c111b01c4e2a79f6b58b 100644 --- a/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-ictce-4.0.6-Python-2.7.3.eb @@ -18,16 +18,16 @@ pythonversion = "2.7.3" versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('setuptools', '0.6c11', versionsuffix) - ] + (python, pythonversion), + ('setuptools', '0.6c11', versionsuffix) +] py_short_ver = ".".join(pythonversion.split(".")[0:2]) pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) sanity_check_paths = { - 'files': [], - 'dirs': ["%s-%s-py%s.egg" % (pylibdir, version, py_short_ver)] - } + 'files': [], + 'dirs': ["%s-%s-py%s.egg" % (pylibdir, version, py_short_ver)] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-ictce-5.3.0-Python-2.7.3.eb index 9711dba080d22d65d1138b2658f583a361ec302e..64c7c6c2448f571b3306473aa6356b1aa40b48b7 100644 --- a/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/j/Jinja2/Jinja2-2.6-ictce-5.3.0-Python-2.7.3.eb @@ -18,16 +18,16 @@ pythonversion = "2.7.3" versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('setuptools', '0.6c11', versionsuffix) - ] + (python, pythonversion), + ('setuptools', '0.6c11', versionsuffix) +] py_short_ver = ".".join(pythonversion.split(".")[0:2]) pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) sanity_check_paths = { - 'files': [], - 'dirs': ["%s-%s-py%s.egg" % (pylibdir, version, py_short_ver)] - } + 'files': [], + 'dirs': ["%s-%s-py%s.egg" % (pylibdir, version, py_short_ver)] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.9r20160115-goolf-1.4.10-Java-1.7.0_75.eb b/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.9r20160115-goolf-1.4.10-Java-1.7.0_75.eb new file mode 100644 index 0000000000000000000000000000000000000000..91946b388ee31943ab198bea6c2eb14bad9ec950 --- /dev/null +++ b/easybuild/easyconfigs/j/jModelTest/jModelTest-2.1.9r20160115-goolf-1.4.10-Java-1.7.0_75.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'PackedBinary' + +name = 'jModelTest' +version = '2.1.9r20160115' + +homepage = 'https://github.com/ddarriba/jmodeltest2' +description="""jModelTest is a tool to carry out statistical selection of best-fit models of nucleotide substitution.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['https://github.com/ddarriba/jmodeltest2/archive/'] +sources = ['v%(version)s.tar.gz'] + +java = 'Java' +javaver = '1.7.0_75' +versionsuffix = '-%s-%s' % (java, javaver) + +builddependencies = [('ant', '1.9.6', '-Java-1.7.0_75', True)] + +dependencies = [('MPJ-Express', '0.44', '%(versionsuffix)s')] + +install_cmd = "cd jmodeltest2-%(version)s && ant -Ddist.dir=%(installdir)s jar" + +modloadmsg = """To execute jModelTest run: java -jar \\$EBROOTJMODELTEST/jModelTest.jar""" + +sanity_check_paths = { + 'files': ['jModelTest.jar'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-foss-2015a.eb b/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-foss-2015a.eb index b9fa5705295ca629a151410b07ea096ff684d318..9511dfc3743ad074124f0c056afd30689a40ec01 100644 --- a/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-foss-2015a.eb +++ b/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-foss-2015a.eb @@ -13,7 +13,7 @@ source_urls = ['http://www.canonware.com/download/jemalloc/'] sources = [SOURCE_TAR_BZ2] sanity_check_paths = { - 'files': ['bin/pprof', 'lib/libjemalloc.a', 'lib/libjemalloc_pic.a', 'lib/libjemalloc.so', + 'files': ['bin/pprof', 'lib/libjemalloc.a', 'lib/libjemalloc_pic.a', 'lib/libjemalloc.%s' % SHLIB_EXT, 'lib/libjemalloc.so.1', 'include/jemalloc/jemalloc.h'], 'dirs': ['share'], } diff --git a/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb b/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb index f80ef5fcba3caea9613b4208213b6b216028e36f..f5af407ce7abe53e4a450e9eb72ea8a375fec62b 100644 --- a/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb +++ b/easybuild/easyconfigs/j/jemalloc/jemalloc-3.6.0-intel-2015a.eb @@ -13,7 +13,7 @@ source_urls = ['http://www.canonware.com/download/jemalloc/'] sources = [SOURCE_TAR_BZ2] sanity_check_paths = { - 'files': ['bin/pprof', 'lib/libjemalloc.a', 'lib/libjemalloc_pic.a', 'lib/libjemalloc.so', + 'files': ['bin/pprof', 'lib/libjemalloc.a', 'lib/libjemalloc_pic.a', 'lib/libjemalloc.%s' % SHLIB_EXT, 'lib/libjemalloc.so.1', 'include/jemalloc/jemalloc.h'], 'dirs': ['share'], } diff --git a/easybuild/easyconfigs/k/KEALib/KEALib-1.4.4-foss-2015a.eb b/easybuild/easyconfigs/k/KEALib/KEALib-1.4.4-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..6d613af708e89963abceae014ce51e41162d3f07 --- /dev/null +++ b/easybuild/easyconfigs/k/KEALib/KEALib-1.4.4-foss-2015a.eb @@ -0,0 +1,36 @@ +easyblock = 'CMakeMake' + +name = 'KEALib' +version = '1.4.4' + +homepage = 'http://www.kealib.org' +description = """KEALib provides an implementation of the GDAL data model. The +format supports raster attribute tables, image pyramids, meta-data and in-built +statistics while also handling very large files and compression throughout. +Based on the HDF5 standard, it also provides a base from which other formats +can be derived and is a good choice for long term data archiving. An +independent software library (libkea) provides complete access to the KEA image +format and a GDAL driver allowing KEA images to be used from any GDAL supported +software.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['https://bitbucket.org/chchrsc/kealib/downloads'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('HDF5', '1.8.16'), +] + +builddependencies = [ + ('CMake', '3.4.1'), +] + +start_dir = 'trunk' + +sanity_check_paths = { + 'files': ['lib/libkea.%s' % SHLIB_EXT, 'bin/kea-config'], + 'dirs': ['bin', 'include', 'lib'] +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb b/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb index 9315d81b5a2e47d426503496ddc88cafd7d49900..7e7833875f8cb76e094284da377ba01aaac62b92 100644 --- a/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb +++ b/easybuild/easyconfigs/k/Kerberos_V5/Kerberos_V5-1.12.2-intel-2014b.eb @@ -24,9 +24,9 @@ preconfigopts = "tar xvf krb5-%(version)s.tar.gz && " + prebuildopts sanity_check_paths = { 'files': ['bin/krb5-config', 'bin/gss-client', 'bin/kadmin', 'sbin/kdb5_util', 'sbin/gss-server', 'sbin/kadmind', - 'lib/libkrb5.so', 'lib/libgssapi_krb5.so', 'lib/libkadm5clnt.so', - 'lib/libkadm5srv.so', 'lib/libkdb5.so', 'lib/libk5crypto.so', - ], + 'lib/libkrb5.%s' % SHLIB_EXT, 'lib/libgssapi_krb5.%s' % SHLIB_EXT, 'lib/libkadm5clnt.%s' % SHLIB_EXT, + 'lib/libkadm5srv.%s' % SHLIB_EXT, 'lib/libkdb5.%s' % SHLIB_EXT, 'lib/libk5crypto.%s' % SHLIB_EXT, + ], 'dirs': ['lib/krb5'] } diff --git a/easybuild/easyconfigs/k/kbproto/kbproto-1.0.7-intel-2016a.eb b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.7-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..29d6a6987afc6b9f25d2a4204ea8d31df8204b6d --- /dev/null +++ b/easybuild/easyconfigs/k/kbproto/kbproto-1.0.7-intel-2016a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'kbproto' +version = '1.0.7' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X.org KBProto protocol headers.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in ['XKBgeom.h', 'XKB.h', 'XKBproto.h', 'XKBsrv.h', 'XKBstr.h']], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/LLVM/LLVM-3.6.2-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/l/LLVM/LLVM-3.6.2-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000000000000000000000000000000000..222230619c8e4adf6bc09d3196ffa0c4e0398bb5 --- /dev/null +++ b/easybuild/easyconfigs/l/LLVM/LLVM-3.6.2-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,42 @@ +easyblock = 'CMakeMake' + +name = 'LLVM' +version = '3.6.2' +python = 'Python' +pyver = '2.7.9' +versionsuffix = '-%s-%s' % (python, pyver) + +homepage = "http://llvm.org/" +description = """The LLVM Core libraries provide a modern source- and target-independent + optimizer, along with code generation support for many popular CPUs + (as well as some less common ones!) These libraries are built around a well + specified code representation known as the LLVM intermediate representation + ("LLVM IR"). The LLVM Core libraries are well documented, and it is + particularly easy to invent your own language (or port an existing compiler) + to use LLVM as an optimizer and code generator.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'cstd': 'gnu++11'} + +source_urls = ["http://llvm.org/releases/%(version)s"] +sources = ["llvm-%(version)s.src.tar.xz"] + +builddependencies = [ + ('CMake', '3.2.3'), + (python, pyver), +] + +dependencies = [ + ('ncurses', '5.9'), +] + +configopts = '-DBUILD_SHARED_LIBS=ON ' + +sanity_check_paths = { + 'files': ['bin/llvm-ar'], + 'dirs': ['include/llvm', 'include/llvm-c'], +} + +separate_build_dir = True + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/l/LLVM/LLVM-3.6.2-intel-2015a.eb b/easybuild/easyconfigs/l/LLVM/LLVM-3.6.2-intel-2015a.eb index 0e2be216c94c5ae847a28bccbafc9b00711ebf4e..7c0771c0833d615bd7360a06c59c9665aaf37153 100644 --- a/easybuild/easyconfigs/l/LLVM/LLVM-3.6.2-intel-2015a.eb +++ b/easybuild/easyconfigs/l/LLVM/LLVM-3.6.2-intel-2015a.eb @@ -23,11 +23,15 @@ builddependencies = [ ('Python', '2.7.10'), ] +dependencies = [ + ('ncurses', '5.9'), +] + configopts = '-DBUILD_SHARED_LIBS=ON ' sanity_check_paths = { - 'files' : ['bin/llvm-ar'], - 'dirs' : ['include/llvm', 'include/llvm-c'], + 'files': ['bin/llvm-ar'], + 'dirs': ['include/llvm', 'include/llvm-c'], } separate_build_dir = True diff --git a/easybuild/easyconfigs/l/LLVM/LLVM-3.6.2-intel-2015b.eb b/easybuild/easyconfigs/l/LLVM/LLVM-3.6.2-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..ab41e5094e10ff5cc3d07ac5b028c91f77a3a2e6 --- /dev/null +++ b/easybuild/easyconfigs/l/LLVM/LLVM-3.6.2-intel-2015b.eb @@ -0,0 +1,39 @@ +easyblock = 'CMakeMake' + +name = 'LLVM' +version = '3.6.2' + +homepage = "http://llvm.org/" +description = """The LLVM Core libraries provide a modern source- and target-independent + optimizer, along with code generation support for many popular CPUs + (as well as some less common ones!) These libraries are built around a well + specified code representation known as the LLVM intermediate representation + ("LLVM IR"). The LLVM Core libraries are well documented, and it is + particularly easy to invent your own language (or port an existing compiler) + to use LLVM as an optimizer and code generator.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'cstd': 'gnu++11'} + +source_urls = ["http://llvm.org/releases/%(version)s"] +sources = ["llvm-%(version)s.src.tar.xz"] + +builddependencies = [ + ('CMake', '3.2.3'), + ('Python', '2.7.11'), +] + +dependencies = [ + ('ncurses', '5.9'), +] + +configopts = '-DBUILD_SHARED_LIBS=ON ' + +sanity_check_paths = { + 'files': ['bin/llvm-ar'], + 'dirs': ['include/llvm', 'include/llvm-c'], +} + +separate_build_dir = True + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/l/LLVM/LLVM-3.7.0-intel-2015a.eb b/easybuild/easyconfigs/l/LLVM/LLVM-3.7.0-intel-2015a.eb index 622b77ee482378dbd02727ca5412e6bf82c328c4..40c74c411b9392c8ef5c214555c1fc3adc3b665e 100644 --- a/easybuild/easyconfigs/l/LLVM/LLVM-3.7.0-intel-2015a.eb +++ b/easybuild/easyconfigs/l/LLVM/LLVM-3.7.0-intel-2015a.eb @@ -23,11 +23,15 @@ builddependencies = [ ('Python', '2.7.10'), ] +dependencies = [ + ('ncurses', '5.9'), +] + configopts = '-DBUILD_SHARED_LIBS=ON ' sanity_check_paths = { - 'files' : ['bin/llvm-ar'], - 'dirs' : ['include/llvm', 'include/llvm-c'], + 'files': ['bin/llvm-ar'], + 'dirs': ['include/llvm', 'include/llvm-c'], } separate_build_dir = True diff --git a/easybuild/easyconfigs/l/LLVM/LLVM-3.7.0-intel-2015b.eb b/easybuild/easyconfigs/l/LLVM/LLVM-3.7.0-intel-2015b.eb index b7b0fd0d07c8f0ab1280f74047cea5370969f3df..b307f91c101ca694b2aa88f4a9babc165d36e8e0 100644 --- a/easybuild/easyconfigs/l/LLVM/LLVM-3.7.0-intel-2015b.eb +++ b/easybuild/easyconfigs/l/LLVM/LLVM-3.7.0-intel-2015b.eb @@ -23,11 +23,15 @@ builddependencies = [ ('Python', '2.7.10'), ] +dependencies = [ + ('ncurses', '5.9'), +] + configopts = '-DBUILD_SHARED_LIBS=ON -DCMAKE_EXE_LINKER_FLAGS="$LDFLAGS -shared-intel" ' sanity_check_paths = { - 'files' : ['bin/llvm-ar'], - 'dirs' : ['include/llvm', 'include/llvm-c'], + 'files': ['bin/llvm-ar'], + 'dirs': ['include/llvm', 'include/llvm-c'], } separate_build_dir = True diff --git a/easybuild/easyconfigs/l/LLVM/LLVM-3.7.1-foss-2016a.eb b/easybuild/easyconfigs/l/LLVM/LLVM-3.7.1-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..4228c8e8243c4ddc393194e9a4d8788c23a7060a --- /dev/null +++ b/easybuild/easyconfigs/l/LLVM/LLVM-3.7.1-foss-2016a.eb @@ -0,0 +1,38 @@ +easyblock = 'CMakeMake' + +name = 'LLVM' +version = '3.7.1' + +homepage = "http://llvm.org/" +description = """The LLVM Core libraries provide a modern source- and target-independent + optimizer, along with code generation support for many popular CPUs + (as well as some less common ones!) These libraries are built around a well + specified code representation known as the LLVM intermediate representation + ("LLVM IR"). The LLVM Core libraries are well documented, and it is + particularly easy to invent your own language (or port an existing compiler) + to use LLVM as an optimizer and code generator.""" + +toolchain = {'name': 'foss', 'version': '2016a'} + +source_urls = ["http://llvm.org/releases/%(version)s"] +sources = ["llvm-%(version)s.src.tar.xz"] + +builddependencies = [ + ('CMake', '3.4.3'), + ('Python', '2.7.11'), +] + +dependencies = [ + ('ncurses', '6.0'), +] + +configopts = '-DBUILD_SHARED_LIBS=ON' + +sanity_check_paths = { + 'files' : ['bin/llvm-ar'], + 'dirs' : ['include/llvm', 'include/llvm-c'], +} + +separate_build_dir = True + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/l/LLVM/LLVM-3.7.1-intel-2015b.eb b/easybuild/easyconfigs/l/LLVM/LLVM-3.7.1-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..79c6af91209557c1250d697b129c1a7a7d8a413e --- /dev/null +++ b/easybuild/easyconfigs/l/LLVM/LLVM-3.7.1-intel-2015b.eb @@ -0,0 +1,39 @@ +easyblock = 'CMakeMake' + +name = 'LLVM' +version = '3.7.1' + +homepage = "http://llvm.org/" +description = """The LLVM Core libraries provide a modern source- and target-independent + optimizer, along with code generation support for many popular CPUs + (as well as some less common ones!) These libraries are built around a well + specified code representation known as the LLVM intermediate representation + ("LLVM IR"). The LLVM Core libraries are well documented, and it is + particularly easy to invent your own language (or port an existing compiler) + to use LLVM as an optimizer and code generator.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'cstd': 'gnu++11'} + +source_urls = ["http://llvm.org/releases/%(version)s"] +sources = ["llvm-%(version)s.src.tar.xz"] + +builddependencies = [ + ('CMake', '3.4.1'), + ('Python', '2.7.11'), +] + +dependencies = [ + ('ncurses', '5.9'), +] + +configopts = '-DBUILD_SHARED_LIBS=ON -DCMAKE_EXE_LINKER_FLAGS="$LDFLAGS -shared-intel" ' + +sanity_check_paths = { + 'files': ['bin/llvm-ar'], + 'dirs': ['include/llvm', 'include/llvm-c'], +} + +separate_build_dir = True + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/l/LLVM/LLVM-3.7.1-intel-2016a.eb b/easybuild/easyconfigs/l/LLVM/LLVM-3.7.1-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..24445c47fb7302a327157a8f2175e25d374e3018 --- /dev/null +++ b/easybuild/easyconfigs/l/LLVM/LLVM-3.7.1-intel-2016a.eb @@ -0,0 +1,39 @@ +easyblock = 'CMakeMake' + +name = 'LLVM' +version = '3.7.1' + +homepage = "http://llvm.org/" +description = """The LLVM Core libraries provide a modern source- and target-independent + optimizer, along with code generation support for many popular CPUs + (as well as some less common ones!) These libraries are built around a well + specified code representation known as the LLVM intermediate representation + ("LLVM IR"). The LLVM Core libraries are well documented, and it is + particularly easy to invent your own language (or port an existing compiler) + to use LLVM as an optimizer and code generator.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'cstd': 'gnu++11'} + +source_urls = ["http://llvm.org/releases/%(version)s"] +sources = ["llvm-%(version)s.src.tar.xz"] + +builddependencies = [ + ('CMake', '3.4.3'), + ('Python', '2.7.11'), +] + +dependencies = [ + ('ncurses', '6.0'), +] + +configopts = '-DBUILD_SHARED_LIBS=ON -DCMAKE_EXE_LINKER_FLAGS="$LDFLAGS -shared-intel" ' + +sanity_check_paths = { + 'files': ['bin/llvm-ar'], + 'dirs': ['include/llvm', 'include/llvm-c'], +} + +separate_build_dir = True + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb index 01b0d95ad8f754c6941bbe4405748e3bfcaad3d1..94a0908fdcc1054a4d760a06914c9033c6ec0573 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-goalf-1.1.0-no-OFED.eb @@ -21,11 +21,11 @@ source_urls = [homepage + 'download/'] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sanity_check_paths = { - 'files': [], - 'dirs': ['lib', 'include'] - } + 'files': [], + 'dirs': ['lib', 'include'] +} -runtest= 'test' +runtest = 'test' parallel = 1 # this is a very conservative choice diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb index 4244d4fadb4a68e79bb0c397734a6c253c226d93..82b1a9bd7b38c44492a92f66060823e101955a1d 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-goolf-1.4.10.eb @@ -21,11 +21,11 @@ source_urls = [homepage + 'download/'] toolchain = {'name': 'goolf', 'version': '1.4.10'} sanity_check_paths = { - 'files': [], - 'dirs': ['lib', 'include'] - } + 'files': [], + 'dirs': ['lib', 'include'] +} -runtest= 'test' +runtest = 'test' parallel = 1 # this is a very conservative choice diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb index 115d1188ad4fef8b3801d19cfc2ede260a2291b2..3dc6b8939e99b2dab5168fd4013122d4324bdeaf 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-4.0.6.eb @@ -21,11 +21,11 @@ source_urls = [homepage + 'download/'] toolchain = {'name': 'ictce', 'version': '4.0.6'} sanity_check_paths = { - 'files': [], - 'dirs': ['lib', 'include'] - } + 'files': [], + 'dirs': ['lib', 'include'] +} -runtest= 'test' +runtest = 'test' parallel = 1 # this is a very conservative choice diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb index 266ce97e2594b5250d65392e23b855937d53e2af..91bc730999e90b356f9e90766951d30c17c4f105 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.1.1.eb @@ -21,11 +21,11 @@ source_urls = [homepage + 'download/'] toolchain = {'name': 'ictce', 'version': '5.1.1'} sanity_check_paths = { - 'files': [], - 'dirs': ['lib', 'include'] - } + 'files': [], + 'dirs': ['lib', 'include'] +} -runtest= 'test' +runtest = 'test' parallel = 1 # this is a very conservative choice diff --git a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb index d1e8d56383e4ec42535975179f32cd5050132d56..5b7a6a1f5c6cac6779c4402d8c2e5dea42fa3f2e 100644 --- a/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/LZO/LZO-2.06-ictce-5.3.0.eb @@ -21,11 +21,11 @@ source_urls = [homepage + 'download/'] toolchain = {'name': 'ictce', 'version': '5.3.0'} sanity_check_paths = { - 'files': [], - 'dirs': ['lib', 'include'] - } + 'files': [], + 'dirs': ['lib', 'include'] +} -runtest= 'test' +runtest = 'test' parallel = 1 # this is a very conservative choice diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2015a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..68f9ad3dc97fc0d8db8af1ad630c8f88b647f312 --- /dev/null +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-foss-2015a.eb @@ -0,0 +1,34 @@ +# Built with EasyBuild version 2.2.0dev on 2015-06-16_10-51-42 +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## +easyblock = 'ConfigureMake' + +name = 'LibTIFF' +version = '4.0.6' + +homepage = 'http://www.remotesensing.org/libtiff/' +description = "tiff: Library and tools for reading and writing TIFF data files" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = [ + 'http://download.osgeo.org/libtiff/', + 'ftp://ftp.remotesensing.org/pub/libtiff/', +] +sources = ['tiff-%(version)s.tar.gz'] + +sanity_check_paths = { + 'files': ['bin/tiffinfo'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016a.eb b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..ed490e66de6f7d517217c815e217ea5fd187210a --- /dev/null +++ b/easybuild/easyconfigs/l/LibTIFF/LibTIFF-4.0.6-intel-2016a.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos , Alan O'Cais (JSC) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## +easyblock = 'ConfigureMake' + +name = 'LibTIFF' +version = '4.0.6' + +homepage = 'http://www.remotesensing.org/libtiff/' +description = "tiff: Library and tools for reading and writing TIFF data files" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [ + 'http://download.osgeo.org/libtiff/', + 'ftp://ftp.remotesensing.org/pub/libtiff/', +] +sources = ['tiff-%(version)s.tar.gz'] + +sanity_check_paths = { + 'files': ['bin/tiffinfo'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/LibUUID/LibUUID-1.0.3-intel-2015a.eb b/easybuild/easyconfigs/l/LibUUID/LibUUID-1.0.3-intel-2015a.eb index e1a2ccf7bb7ade1ef02142b41632711a197a08f4..4d767e1cf33b46708709a59c26dd87298df65576 100644 --- a/easybuild/easyconfigs/l/LibUUID/LibUUID-1.0.3-intel-2015a.eb +++ b/easybuild/easyconfigs/l/LibUUID/LibUUID-1.0.3-intel-2015a.eb @@ -8,11 +8,11 @@ description = """Portable uuid C library""" toolchain = {'name': 'intel', 'version': '2015a'} -source_urls = [SOURCEFORGE_SOURCE] +source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files' : ['include/uuid/uuid.h', 'lib/libuuid.a','lib/libuuid.so'], + 'files': ['include/uuid/uuid.h', 'lib/libuuid.a', 'lib/libuuid.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/LibUUID/LibUUID-1.0.3-intel-2015b.eb b/easybuild/easyconfigs/l/LibUUID/LibUUID-1.0.3-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..d231b0ce29995cd28e93f9bbe4e1c6344561a35a --- /dev/null +++ b/easybuild/easyconfigs/l/LibUUID/LibUUID-1.0.3-intel-2015b.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'LibUUID' +version = '1.0.3' + +homepage = 'http://sourceforge.net/projects/libuuid/' +description = """Portable uuid C library""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['include/uuid/uuid.h', 'lib/libuuid.a', 'lib/libuuid.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-2015.06-XC.eb similarity index 93% rename from easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.1.29.eb rename to easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-2015.06-XC.eb index 7d4d9128c9401b9150ee0ccf2d47274e571349f3..8c50a3c76663a9a59af1e22330ab069ae7131e94 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-2015.06-XC.eb @@ -5,7 +5,7 @@ homepage = 'https://sourceforge.net/p/libint/' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} toolchainopts = {'opt': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-2015.11-XC.eb similarity index 93% rename from easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.25.eb rename to easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-2015.11-XC.eb index e7bca79f1d79fda628bdc5418373ca92cf68ef98..ba7eabefb47f123a89805401b19bb9da7ec00c43 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-2015.11-XC.eb @@ -5,7 +5,7 @@ homepage = 'https://sourceforge.net/p/libint/' description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} toolchainopts = {'opt': True, 'pic': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.40.eb deleted file mode 100644 index 4f2df4435212a833351fb15915b6d8d3f2c1320f..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-CrayGNU-5.2.40.eb +++ /dev/null @@ -1,24 +0,0 @@ -name = 'Libint' -version = '1.1.4' - -homepage = 'https://sourceforge.net/p/libint/' -description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body - matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" - -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} -toolchainopts = {'opt': True, 'pic': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = ('http://sourceforge.net/projects/libint/files/v1-releases/', 'download') - -configopts = "--enable-deriv --enable-r12" - -sanity_check_paths = { - 'files': ['include/lib%(x)s/lib%(x)s.h' % {'x': x} for x in ['deriv', 'int', 'r12']] + - ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + - ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + - ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], - 'dirs':[], -} - -moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-foss-2015b.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-foss-2015b.eb index ba9b735bea8175f438671d27fa45c371e20354a5..8892a51e3b462c14419c1eb7de4186849269c054 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-foss-2015b.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-foss-2015b.eb @@ -18,7 +18,7 @@ sanity_check_paths = { ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], - 'dirs':[], + 'dirs': [], } moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb index 2c0f30db6f2ffeb1bd29599452e66d6b379ba345..d9c94abb26021d005b454d7694cb9fe8b3199311 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-gmacml-1.7.0.eb @@ -18,7 +18,7 @@ sanity_check_paths = { ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], - 'dirs':[], + 'dirs': [], } moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb index 03c9b2dc7a7b076ebb51e9005a4fa43c5953a7b2..c04b9aefa2dd85df30cd9d601fca97bbd50419e0 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goalf-1.1.0-no-OFED.eb @@ -18,7 +18,7 @@ sanity_check_paths = { ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], - 'dirs':[], + 'dirs': [], } moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb index 730a15d185cecbc1d6bf034318679ddf15b8ebf7..2a492f12bccd33c643905bb739a16e8249838321 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-goolf-1.4.10.eb @@ -17,7 +17,7 @@ sanity_check_paths = { ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], - 'dirs':[], + 'dirs': [], } moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb index f3c3b23d4adb62c1e3a4c3ddd3c1f5976654331b..43b19b6334b5a344e38b7f756c9343ee8f93582f 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-3.2.2.u3.eb @@ -18,7 +18,7 @@ sanity_check_paths = { ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], - 'dirs':[], + 'dirs': [], } moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb index 4e57ea250063a2c3db802b1e7cf413fddac53f2d..148e3670c0d67ac55ebdfcab2948c35a6012d692 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-4.1.13.eb @@ -18,7 +18,7 @@ sanity_check_paths = { ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], - 'dirs':[], + 'dirs': [], } moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb index 785e595968d71797d4aa007af6ac2af4c9e4bffe..df06fc7ec9d254858e2ba6cb1358093eeb418616 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.3.0.eb @@ -18,7 +18,7 @@ sanity_check_paths = { ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], - 'dirs':[], + 'dirs': [], } moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb index 401ec7cb9e47739b5a9c4bfb5c8ddbb617f4de9e..edcbb88f18c52a059bc6c5c2507643a5c261e8c7 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-ictce-5.5.0.eb @@ -18,7 +18,7 @@ sanity_check_paths = { ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], - 'dirs':[], + 'dirs': [], } moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb index e84c9a7220ec3db189163a600de0e656b4dbd379..e0416eeeb5da0cbf48842f3b4b4bc3d7c669acb7 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2014b.eb @@ -18,7 +18,7 @@ sanity_check_paths = { ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], - 'dirs':[], + 'dirs': [], } moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2015a.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2015a.eb index 2cf26e1b10bdc05493e6407c1a399996d2445506..eff3b17ce61100bfcf9f04f0e1c8d5f570fde1d0 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2015a.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2015a.eb @@ -18,7 +18,7 @@ sanity_check_paths = { ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], - 'dirs':[], + 'dirs': [], } moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2015b.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2015b.eb index 1e71a38b555915bd997380294f0e7a6549acb613..0728b4341fa0725445a9a9768f2f9d968a5e5642 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2015b.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-2015b.eb @@ -18,7 +18,7 @@ sanity_check_paths = { ['include/libint/hrr_header.h', 'include/libint/vrr_header.h'] + ['lib/lib%s.a' % x for x in ['deriv', 'int', 'r12']] + ['lib/lib%s.so' % x for x in ['deriv', 'int', 'r12']], - 'dirs':[], + 'dirs': [], } moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-para-2014.12.eb b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-para-2014.12.eb index 131e4988f11c6622eefb3c256c1026d1b0ca6fa2..44424f9578343e28658d9dbfceab984169890a8c 100644 --- a/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-para-2014.12.eb +++ b/easybuild/easyconfigs/l/Libint/Libint-1.1.4-intel-para-2014.12.eb @@ -17,7 +17,7 @@ sanity_check_paths = { 'files': ["include/lib%(x)s/lib%(x)s.h" % {'x': x} for x in ["deriv", "int", "r12"]] + ["include/libint/hrr_header.h", "include/libint/vrr_header.h"] + ["lib/lib%s.a" % x for x in ["deriv", "int", "r12"]], - 'dirs':[], + 'dirs': [], } moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2015b.eb b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..114eb8bcef1f95d972a011f9cf885de387e7192c --- /dev/null +++ b/easybuild/easyconfigs/l/Libint/Libint-2.0.3-intel-2015b.eb @@ -0,0 +1,14 @@ +name = 'Libint' +version = '2.0.3' + +homepage = 'https://sourceforge.net/p/libint' +description = """Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body + matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'pic': True} + +sources = ['libint-%(version)s-stable.tgz'] +source_urls = ['http://downloads.sourceforge.net/project/libint/libint-for-mpqc'] + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/LittleCMS/LittleCMS-2.7-goolf-1.4.10.eb b/easybuild/easyconfigs/l/LittleCMS/LittleCMS-2.7-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..bea932c18dc0429462c8d32777e5589208096495 --- /dev/null +++ b/easybuild/easyconfigs/l/LittleCMS/LittleCMS-2.7-goolf-1.4.10.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'LittleCMS' +version = '2.7' + +homepage = 'http://www.littlecms.com/' +description = """ Little CMS intends to be an OPEN SOURCE small-footprint color management engine, + with special focus on accuracy and performance. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://sourceforge.net/projects/lcms/files/lcms/%(version)s/'] +sources = ['lcms2-%(version)s.tar.gz'] + +dependencies = [('libjpeg-turbo', '1.4.2')] + +sanity_check_paths = { + 'files': ['bin/jpgicc', 'bin/linkicc', 'bin/psicc', 'bin/transicc', 'include/lcms2.h', 'include/lcms2_plugin.h', + 'lib/liblcms2.a', 'lib/liblcms2.%s' % SHLIB_EXT, 'lib/pkgconfig/lcms2.pc'], + 'dirs': ['share/man'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb index 36b7df3cbbbfa1e5659c2b02b80195cbd77c3d45..143cec914499e94920e6bc42271f4fdd68367912 100644 --- a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goalf-1.1.0-no-OFED.eb @@ -26,15 +26,15 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} # fi. http://ftp.yar.ru/pub/source/lftp/lftp-4.4.1.tar.bz2 sources = [SOURCE_TAR_BZ2] source_urls = [ - 'http://ftp.yar.ru/pub/source/lftp/', - 'http://ftp.yar.ru/pub/source/lftp/old/', - ] + 'http://ftp.yar.ru/pub/source/lftp/', + 'http://ftp.yar.ru/pub/source/lftp/old/', +] dependencies = [('gnutls', '3.1.8')] sanity_check_paths = { - 'files': ['bin/lftp'], - 'dirs': [] - } + 'files': ['bin/lftp'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb index 9d1f79e19b05d2611b7ec05f73f4869f827c8503..e96735ec2cf1d29cb7687c0356336456731fab88 100644 --- a/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/lftp/lftp-4.4.1-goolf-1.4.10.eb @@ -25,15 +25,15 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} # fi. http://ftp.yar.ru/pub/source/lftp/lftp-4.4.1.tar.bz2 sources = [SOURCE_TAR_BZ2] source_urls = [ - 'http://ftp.yar.ru/pub/source/lftp/', - 'http://ftp.yar.ru/pub/source/lftp/old/', - ] + 'http://ftp.yar.ru/pub/source/lftp/', + 'http://ftp.yar.ru/pub/source/lftp/old/', +] dependencies = [('gnutls', '3.1.8')] sanity_check_paths = { - 'files': ['bin/lftp'], - 'dirs': [] - } + 'files': ['bin/lftp'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-intel-2015a-Python-2.7.10.eb index 8b9006f86dfeda097f60c6aae03b405ba772e972..c4c01e4178269838fbe4dfeaffe20fd30400f176 100644 --- a/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-intel-2015a-Python-2.7.10.eb @@ -18,8 +18,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['lib/libGLU.so.1'], - 'dirs' : [], + 'files': ['lib/libGLU.so.1'], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-intel-2015b-Mesa-11.0.8.eb b/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-intel-2015b-Mesa-11.0.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..1d535efa3e46b37f9b4852c9fa5c7f0af5c43067 --- /dev/null +++ b/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-intel-2015b-Mesa-11.0.8.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'libGLU' +version = '9.0.0' + +homepage = 'ftp://ftp.freedesktop.org/pub/mesa/glu/' +description = """The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL. """ + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'pic': True} + +source_urls = ['ftp://ftp.freedesktop.org/pub/mesa/glu/'] +sources = ['glu-%(version)s.tar.bz2'] + +mesaver = '11.0.8' +versionsuffix = '-Mesa-%s' % mesaver + +dependencies = [ + ('Mesa', mesaver, '-Python-2.7.11'), +] + +sanity_check_paths = { + 'files': ['lib/libGLU.so.1'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-intel-2015b.eb b/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-intel-2015b.eb index c0145295eb1fbb6545f945df2bfa680827188dc9..bc9de7e0c8f1d5a05639800c6bd89417bb14e4b7 100644 --- a/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libGLU/libGLU-9.0.0-intel-2015b.eb @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['lib/libGLU.so.1'], - 'dirs' : [], + 'files': ['lib/libGLU.so.1'], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-goolf-1.4.10.eb index e1317b6a068d5a7d4881024fc0c9ecac35b331bb..42c22fbb11b28fda991e666236c50ccba4306efd 100644 --- a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-goolf-1.4.10.eb @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/ICE/ICE%s.h' % x for x in ['', 'conn', 'lib', 'msg', 'proto', 'util']], - 'dirs' : [], + 'files': ['include/X11/ICE/ICE%s.h' % x for x in ['', 'conn', 'lib', 'msg', 'proto', 'util']], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-goolf-1.5.14.eb index fad83246f3a50415beaa72e7101a3dc38c2b03c3..45efaa2f599ab0b35d150aa75ffaef59646f8ac3 100644 --- a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-goolf-1.5.14.eb @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/ICE/ICE%s.h' % x for x in ['', 'conn', 'lib', 'msg', 'proto', 'util']], - 'dirs' : [], + 'files': ['include/X11/ICE/ICE%s.h' % x for x in ['', 'conn', 'lib', 'msg', 'proto', 'util']], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-4.1.13.eb index a224ca2f47bbf8b98502d087b2e00b659be3149d..cbf26ccb0e33cdcd5bba6a20441469eed960d27c 100644 --- a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-4.1.13.eb @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/ICE/ICE%s.h' % x for x in ['', 'conn', 'lib', 'msg', 'proto', 'util']], - 'dirs' : [], + 'files': ['include/X11/ICE/ICE%s.h' % x for x in ['', 'conn', 'lib', 'msg', 'proto', 'util']], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-5.3.0.eb index 84dfd42c65de33f08ed5aa160c6b6443a92a7841..c6c611bb2bf77dd77872709def3c66292d293d3f 100644 --- a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-ictce-5.3.0.eb @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/ICE/ICE%s.h' % x for x in ['', 'conn', 'lib', 'msg', 'proto', 'util']], - 'dirs' : [], + 'files': ['include/X11/ICE/ICE%s.h' % x for x in ['', 'conn', 'lib', 'msg', 'proto', 'util']], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-intel-2014b.eb b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-intel-2014b.eb index d296c6ae8cb5f908c920013f904fba246d58eac8..bb3839e6a656332beb122593752b4cd2aaaf64ef 100644 --- a/easybuild/easyconfigs/l/libICE/libICE-1.0.8-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libICE/libICE-1.0.8-intel-2014b.eb @@ -6,7 +6,7 @@ version = '1.0.8' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """X Inter-Client Exchange library for freedesktop.org""" -toolchain = {'name': 'intel', 'version': '2014b'} +toolchain = {'name': 'intel', 'version': '2014b'} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] @@ -21,8 +21,8 @@ builddependencies = [ sanity_check_paths = { - 'files' : ['include/X11/ICE/ICE%s.h' % x for x in ['', 'conn', 'lib', 'msg', 'proto', 'util']], - 'dirs' : [], + 'files': ['include/X11/ICE/ICE%s.h' % x for x in ['', 'conn', 'lib', 'msg', 'proto', 'util']], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libICE/libICE-1.0.9-intel-2015a.eb b/easybuild/easyconfigs/l/libICE/libICE-1.0.9-intel-2015a.eb index 57f6a9f4e3f631531f27facbf86040b16e92fdf6..0fb685525a9ab458f3e046a77cddb9c6b605bd98 100644 --- a/easybuild/easyconfigs/l/libICE/libICE-1.0.9-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libICE/libICE-1.0.9-intel-2015a.eb @@ -6,7 +6,7 @@ version = '1.0.9' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """X Inter-Client Exchange library for freedesktop.org""" -toolchain = {'name': 'intel', 'version': '2015a'} +toolchain = {'name': 'intel', 'version': '2015a'} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] @@ -20,8 +20,8 @@ builddependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/ICE/ICE%s.h' % x for x in ['', 'conn', 'lib', 'msg', 'proto', 'util']], - 'dirs' : [], + 'files': ['include/X11/ICE/ICE%s.h' % x for x in ['', 'conn', 'lib', 'msg', 'proto', 'util']], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libICE/libICE-1.0.9-intel-2015b.eb b/easybuild/easyconfigs/l/libICE/libICE-1.0.9-intel-2015b.eb index 061d77840dd2f63c5f0db8a2bd02120e1f051a1b..d28d3a6e76598182c9fe359a02891d3a95faa57f 100644 --- a/easybuild/easyconfigs/l/libICE/libICE-1.0.9-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libICE/libICE-1.0.9-intel-2015b.eb @@ -6,7 +6,7 @@ version = '1.0.9' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """X Inter-Client Exchange library for freedesktop.org""" -toolchain = {'name': 'intel', 'version': '2015b'} +toolchain = {'name': 'intel', 'version': '2015b'} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] @@ -20,8 +20,8 @@ builddependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/ICE/ICE%s.h' % x for x in ['', 'conn', 'lib', 'msg', 'proto', 'util']], - 'dirs' : [], + 'files': ['include/X11/ICE/ICE%s.h' % x for x in ['', 'conn', 'lib', 'msg', 'proto', 'util']], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-goolf-1.4.10.eb index aa6111e5a0718ca96a1d47028b23c6bf236b3c57..69237fa741e4848a9a18f3bf4f3ac2c95210c16e 100644 --- a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-goolf-1.4.10.eb @@ -21,8 +21,8 @@ builddependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/SM/%s' % x for x in ['SM.h', 'SMlib.h', 'SMproto.h']], - 'dirs' : [], + 'files': ['include/X11/SM/%s' % x for x in ['SM.h', 'SMlib.h', 'SMproto.h']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-goolf-1.5.14.eb index c115e440d52ef3bf6ef78a8d92099f8da116ab71..e7ecc39a17ff381aa4789b92bfbe824ae8fcdb72 100644 --- a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-goolf-1.5.14.eb @@ -21,8 +21,8 @@ builddependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/SM/%s' % x for x in ['SM.h', 'SMlib.h', 'SMproto.h']], - 'dirs' : [], + 'files': ['include/X11/SM/%s' % x for x in ['SM.h', 'SMlib.h', 'SMproto.h']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-4.1.13.eb index 14074eae88feec15f0c0215d24bd47045e6096db..de61279284a7f280c60177e66ee4f7326f0c15da 100644 --- a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-4.1.13.eb @@ -21,8 +21,8 @@ builddependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/SM/%s' % x for x in ['SM.h', 'SMlib.h', 'SMproto.h']], - 'dirs' : [], + 'files': ['include/X11/SM/%s' % x for x in ['SM.h', 'SMlib.h', 'SMproto.h']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-5.3.0.eb index ee47bc867f3c8eb5a2d1fa28bf640603a0602e4f..b2524399f7847b742508431c3a2cdbc696e70082 100644 --- a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-ictce-5.3.0.eb @@ -21,8 +21,8 @@ builddependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/SM/%s' % x for x in ['SM.h', 'SMlib.h', 'SMproto.h']], - 'dirs' : [], + 'files': ['include/X11/SM/%s' % x for x in ['SM.h', 'SMlib.h', 'SMproto.h']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-intel-2014b.eb b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-intel-2014b.eb index 8182108112cee23c2ae5bfc0e334c939b66ad825..a15bba69ef0ac314ec20b4812bcab675c87addf0 100644 --- a/easybuild/easyconfigs/l/libSM/libSM-1.2.1-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libSM/libSM-1.2.1-intel-2014b.eb @@ -21,8 +21,8 @@ builddependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/SM/%s' % x for x in ['SM.h', 'SMlib.h', 'SMproto.h']], - 'dirs' : [], + 'files': ['include/X11/SM/%s' % x for x in ['SM.h', 'SMlib.h', 'SMproto.h']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/libSM/libSM-1.2.2-intel-2015a.eb b/easybuild/easyconfigs/l/libSM/libSM-1.2.2-intel-2015a.eb index 7d8fcfe61addb4eda143576e468742909975f991..2a2391d84707047a1c92746781d8beb9550b813f 100644 --- a/easybuild/easyconfigs/l/libSM/libSM-1.2.2-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libSM/libSM-1.2.2-intel-2015a.eb @@ -21,8 +21,8 @@ builddependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/SM/%s' % x for x in ['SM.h', 'SMlib.h', 'SMproto.h']], - 'dirs' : [], + 'files': ['include/X11/SM/%s' % x for x in ['SM.h', 'SMlib.h', 'SMproto.h']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/libSM/libSM-1.2.2-intel-2015b.eb b/easybuild/easyconfigs/l/libSM/libSM-1.2.2-intel-2015b.eb index 3cd80afcd1e3a89b3f5ed96393f65d023b626c90..641ea444768c8466cb450155f6ba31748e645a4c 100644 --- a/easybuild/easyconfigs/l/libSM/libSM-1.2.2-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libSM/libSM-1.2.2-intel-2015b.eb @@ -21,8 +21,8 @@ builddependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/SM/%s' % x for x in ['SM.h', 'SMlib.h', 'SMproto.h']], - 'dirs' : [], + 'files': ['include/X11/SM/%s' % x for x in ['SM.h', 'SMlib.h', 'SMproto.h']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.4.10.eb index 520bd74e88bf64c372bad405f73b3717ce4dc429..90e0e2d976ce7cd89dc8c00249de974eeec57a18 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.4.10.eb @@ -27,9 +27,9 @@ dependencies = [ sanity_check_paths = { 'files': ['include/X11/%s' % x for x in [ - 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', - 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', - ] + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.5.14.eb index aee383b326ddb3e1d26de090713aee611b84663a..b7f55fcda109b0ee0160f27f842e4bb0142e6d5e 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-goolf-1.5.14.eb @@ -27,9 +27,9 @@ dependencies = [ sanity_check_paths = { 'files': ['include/X11/%s' % x for x in [ - 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', - 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', - ] + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-4.1.13.eb index 693be4e80907f1b05908777f8821c90805ce69ff..89a1e29d9be7edb38d44c6b861e773d569527658 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-4.1.13.eb @@ -27,9 +27,9 @@ dependencies = [ sanity_check_paths = { 'files': ['include/X11/%s' % x for x in [ - 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', - 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', - ] + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-5.3.0.eb index 0e6ea38eed897d61bc3403952abf528980fad74f..fddb03dd7fe61aca2952f1a3469097f29364a3ba 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-ictce-5.3.0.eb @@ -27,9 +27,9 @@ dependencies = [ sanity_check_paths = { 'files': ['include/X11/%s' % x for x in [ - 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', - 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', - ] + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2014b.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2014b.eb index 893f0011c60909bfa8ead8684422b4ccf5cb7120..3522b7de999bcd34f1608722b5ebd4d85ca5cd52 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.1-intel-2014b.eb @@ -27,9 +27,9 @@ dependencies = [ sanity_check_paths = { 'files': ['include/X11/%s' % x for x in [ - 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', - 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', - ] + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-foss-2014b-Python-2.7.8.eb index 2f11de33483964c14e4a0f1287258a86c0965701..01231ac64085fdbcead80f0e55961556e99dbccb 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-foss-2014b-Python-2.7.8.eb @@ -27,9 +27,9 @@ dependencies = [ sanity_check_paths = { 'files': ['include/X11/%s' % x for x in [ - 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', - 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', - ] + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb index 491d7b754b38a597c70a5246bd00bdae495e294b..09325945908fc8623b0da6cd47d55e4dceaf8b31 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2014b-Python-2.7.8.eb @@ -7,7 +7,7 @@ versionsuffix = '-Python-2.7.8' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """X11 client-side library""" -toolchain = {'name': 'intel', 'version': '2014b'} +toolchain = {'name': 'intel', 'version': '2014b'} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] @@ -27,9 +27,9 @@ dependencies = [ sanity_check_paths = { 'files': ['include/X11/%s' % x for x in [ - 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', - 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', - ] + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2015a-Python-2.7.9.eb index 3f72262d57dd754c01e3452d7251b5d8e03f9f20..ef095b7705be01bc762b280f8357bc04c931e2ea 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.2-intel-2015a-Python-2.7.9.eb @@ -7,7 +7,7 @@ versionsuffix = '-Python-2.7.9' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """X11 client-side library""" -toolchain = {'name': 'intel', 'version': '2015a'} +toolchain = {'name': 'intel', 'version': '2015a'} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] @@ -27,9 +27,9 @@ dependencies = [ sanity_check_paths = { 'files': ['include/X11/%s' % x for x in [ - 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', - 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', - ] + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.3-goolf-1.5.14-Python-2.7.9.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.3-goolf-1.5.14-Python-2.7.9.eb index 7e6d887343b3f7e54d5d735cfca461b98e232b76..9826dc599df3c0f2b3a27e07edc8d630fe633239 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.3-goolf-1.5.14-Python-2.7.9.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.3-goolf-1.5.14-Python-2.7.9.eb @@ -27,9 +27,9 @@ dependencies = [ sanity_check_paths = { 'files': ['include/X11/%s' % x for x in [ - 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', - 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', - ] + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015a-Python-2.7.10.eb index 9c513d4634cfe420d8a127ad8c7c8408ed7539c3..f3cc16617c92074bd184ded48da2f8705de6185f 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015a-Python-2.7.10.eb @@ -7,7 +7,7 @@ versionsuffix = '-Python-2.7.10' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """X11 client-side library""" -toolchain = {'name': 'intel', 'version': '2015a'} +toolchain = {'name': 'intel', 'version': '2015a'} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] @@ -27,9 +27,9 @@ dependencies = [ sanity_check_paths = { 'files': ['include/X11/%s' % x for x in [ - 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', - 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', - ] + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015a-Python-2.7.9.eb index aec9e4570d870e8e3ab88d3e0dba95965e9e163f..f4b3c5923c6a57fd226f6d6909b92a6b821ef1bb 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015a-Python-2.7.9.eb @@ -7,7 +7,7 @@ versionsuffix = '-Python-2.7.9' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """X11 client-side library""" -toolchain = {'name': 'intel', 'version': '2015a'} +toolchain = {'name': 'intel', 'version': '2015a'} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] @@ -27,9 +27,9 @@ dependencies = [ sanity_check_paths = { 'files': ['include/X11/%s' % x for x in [ - 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', - 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', - ] + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015b-Python-2.7.10.eb index 81992bc475333e49f16d338459c7febc26447dd4..57e06f392acb24d96db6a25abdda8af16ffee58e 100644 --- a/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015b-Python-2.7.10.eb @@ -7,7 +7,7 @@ versionsuffix = '-Python-2.7.10' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """X11 client-side library""" -toolchain = {'name': 'intel', 'version': '2015b'} +toolchain = {'name': 'intel', 'version': '2015b'} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] @@ -27,9 +27,9 @@ dependencies = [ sanity_check_paths = { 'files': ['include/X11/%s' % x for x in [ - 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', - 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', - ] + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..3280e3a1e6468d205b2e814b927c5360ef20b5d8 --- /dev/null +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'libX11' +version = '1.6.3' +versionsuffix = '-Python-2.7.11' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('xextproto', '7.3.0'), + ('xcb-proto', '1.11', versionsuffix), + ('inputproto', '2.3.1'), + ('xproto', '7.0.28'), + ('kbproto', '1.0.7'), +] + +dependencies = [ + ('libxcb', '1.11.1', versionsuffix), + ('xtrans', '1.3.5'), +] + +sanity_check_paths = { + 'files': ['include/X11/%s' % x for x in [ + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2016a.eb b/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..5df5e13e4384191b805c2779f3afd5e1e101b8e1 --- /dev/null +++ b/easybuild/easyconfigs/l/libX11/libX11-1.6.3-intel-2016a.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'libX11' +version = '1.6.3' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('xextproto', '7.3.0'), + ('xcb-proto', '1.11', '', True), + ('inputproto', '2.3.1'), + ('xproto', '7.0.28'), + ('libpthread-stubs', '0.3'), + ('kbproto', '1.0.7'), + ('xtrans', '1.3.5'), +] + +dependencies = [ + ('libxcb', '1.11.1'), +] + +sanity_check_paths = { + 'files': ['include/X11/%s' % x for x in [ + 'cursorfont.h', 'ImUtil.h', 'Xcms.h', 'XKBlib.h', 'XlibConf.h', 'Xlib.h', 'Xlibint.h', 'Xlib-xcb.h', + 'Xlocale.h', 'Xregion.h', 'Xresource.h', 'Xutil.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXScrnSaver/libXScrnSaver-1.2.2-intel-2015a.eb b/easybuild/easyconfigs/l/libXScrnSaver/libXScrnSaver-1.2.2-intel-2015a.eb index 0889930509402b0b32bc7a0bd8de6ba4c9cfdf34..964480ee2ec681b2d65f4f8ee779f4d122b0ce8a 100644 --- a/easybuild/easyconfigs/l/libXScrnSaver/libXScrnSaver-1.2.2-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libXScrnSaver/libXScrnSaver-1.2.2-intel-2015a.eb @@ -17,7 +17,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libXss.a', 'lib/libXss.so', 'include/X11/extensions/scrnsaver.h'], + 'files': ['lib/libXss.a', 'lib/libXss.%s' % SHLIB_EXT, 'include/X11/extensions/scrnsaver.h'], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-foss-2014b.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-foss-2014b.eb index 26a7c1bcad481d2485123a5899dcd0d51f3e7b9d..7a01f9c781681b7d8c4946d00b9825cb8d8a003f 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-foss-2014b.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-foss-2014b.eb @@ -18,7 +18,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXau.a', 'libXau.so']], + 'files': ['lib/libXau.a', 'lib/libXau.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.4.10.eb index 1cbc16e8bbedd82a071f983c86248a78211de0c0..12dd6869a6c837e108a445c5789f92c16404e726 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.4.10.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXau.a', 'libXau.so']], + 'files': ['lib/libXau.a', 'lib/libXau.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.5.14.eb index 2de39a52c7c7f3d73462ee78fea927a353c89b5d..f1bc2bfb36875150420155b91c7a9d1722f124cd 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-goolf-1.5.14.eb @@ -18,7 +18,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXau.a', 'libXau.so']], + 'files': ['lib/libXau.a', 'lib/libXau.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-4.1.13.eb index aa72c34e220a493a372528b2a97cce0dae9e5d55..2131263c1d694a07eead2ae716a5746c6296ca82 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-4.1.13.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXau.a', 'libXau.so']], + 'files': ['lib/libXau.a', 'lib/libXau.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-5.3.0.eb index 61b3a03f5e6b606424c10ae74efff628d4d3b791..6493f4c619a8ea9635e974e367d742d3fe2af078 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-ictce-5.3.0.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXau.a', 'libXau.so']], + 'files': ['lib/libXau.a', 'lib/libXau.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb index de6588743754866b920e33e1520fd285f1f1c950..22bf8016cf0fdc86c152fe18f46913fd5eee4b88 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2014b.eb @@ -18,7 +18,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXau.a', 'libXau.so']], + 'files': ['lib/libXau.a', 'lib/libXau.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2015a.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2015a.eb index 03dfe7dd925c47d3bbaab09dd10c32f39415128a..408dc4aede5be980d0830bd718f95963e3351909 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2015a.eb @@ -18,7 +18,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXau.a', 'libXau.so']], + 'files': ['lib/libXau.a', 'lib/libXau.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2015b.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2015b.eb index fae47f9348b7d0db24d1e41a9a334f3e0d3f5797..9304d0fc7923a5a9e3a090ac67aed9a4dfd402c5 100644 --- a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2015b.eb @@ -18,7 +18,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXau.a', 'libXau.so']], + 'files': ['lib/libXau.a', 'lib/libXau.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2016a.eb b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..243dbd6f22b4c08fdf9b93aec56d036ffc025ea3 --- /dev/null +++ b/easybuild/easyconfigs/l/libXau/libXau-1.0.8-intel-2016a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libXau' +version = '1.0.8' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """The libXau package contains a library implementing the X11 Authorization Protocol. +This is useful for restricting client access to the display.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +builddependencies = [ + ('xproto', '7.0.28'), +] + +sanity_check_paths = { + 'files': ['lib/libXau.a', 'lib/libXau.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-goolf-1.4.10.eb index 0afe4224f62594cfdec81c2dd8a005c8f3ae3e92..f340efd9304f50795692e5d943feadcd922bfa0e 100644 --- a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-goolf-1.4.10.eb @@ -17,7 +17,7 @@ dependencies = [ ('libXpm', '3.5.11'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXaw6.a', 'libXaw7.a', 'libXaw.so']], + 'files': ['lib/%s' % x for x in ['libXaw6.a', 'libXaw7.a', 'libXaw.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-goolf-1.5.14.eb index 9a8e4a899f936bc8ea9998bda0c6e45ce99c683d..cd2a86aaa78816ad5befaecb161c0c8a081a289b 100644 --- a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-goolf-1.5.14.eb @@ -17,7 +17,7 @@ dependencies = [ ('libXpm', '3.5.11'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXaw6.a', 'libXaw7.a', 'libXaw.so']], + 'files': ['lib/%s' % x for x in ['libXaw6.a', 'libXaw7.a', 'libXaw.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-4.1.13.eb index dbbc5cbafd704f941994bfbf3a00ff29f464ea0d..392e94c34121abb380fac24c8624717a5e4188ab 100644 --- a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-4.1.13.eb @@ -17,7 +17,7 @@ dependencies = [ ('libXpm', '3.5.11'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXaw6.a', 'libXaw7.a', 'libXaw.so']], + 'files': ['lib/%s' % x for x in ['libXaw6.a', 'libXaw7.a', 'libXaw.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-5.3.0.eb index ab991baeb12777a32be65fbf0ae6e07fa4fa6a24..df9ea11747f57ad93d5231153e1fc3d70a7f9e1c 100644 --- a/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXaw/libXaw-1.0.12-ictce-5.3.0.eb @@ -17,7 +17,7 @@ dependencies = [ ('libXpm', '3.5.11'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXaw6.a', 'libXaw7.a', 'libXaw.so']], + 'files': ['lib/%s' % x for x in ['libXaw6.a', 'libXaw7.a', 'libXaw.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXcursor/libXcursor-1.1.14-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/l/libXcursor/libXcursor-1.1.14-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..0eefe006cb7966070c31a2748bd2813846b268a6 --- /dev/null +++ b/easybuild/easyconfigs/l/libXcursor/libXcursor-1.1.14-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'libXcursor' +version = '1.1.14' +versionsuffix = '-Python-2.7.11' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X Cursor management library""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('fixesproto', '5.0'), +] + +dependencies = [ + ('libX11', '1.6.3', versionsuffix), + ('libXfixes', '5.0.1'), + ('libXrender', '0.9.9', versionsuffix), +] + +sanity_check_paths = { + 'files': ['include/X11/Xcursor/Xcursor.h', 'lib/libXcursor.so', 'lib/libXcursor.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXcursor/libXcursor-1.1.14-intel-2015b.eb b/easybuild/easyconfigs/l/libXcursor/libXcursor-1.1.14-intel-2015b.eb index b03a386fb2bb2240bfbbcb59c3b553fab95e5cd2..4da67074115b28cf8c8de5957f128a98939575c8 100644 --- a/easybuild/easyconfigs/l/libXcursor/libXcursor-1.1.14-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libXcursor/libXcursor-1.1.14-intel-2015b.eb @@ -22,7 +22,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['include/X11/Xcursor/Xcursor.h', 'lib/libXcursor.so', 'lib/libXcursor.a'], + 'files': ['include/X11/Xcursor/Xcursor.h', 'lib/libXcursor.%s' % SHLIB_EXT, 'lib/libXcursor.a'], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXdamage/libXdamage-1.1.4-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/l/libXdamage/libXdamage-1.1.4-intel-2015a-Python-2.7.10.eb index 0cb53836e382ccebf106804266a25f116b16dd6e..74d7162e6f9800d734a77d246a72090599c94b38 100644 --- a/easybuild/easyconfigs/l/libXdamage/libXdamage-1.1.4-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/l/libXdamage/libXdamage-1.1.4-intel-2015a-Python-2.7.10.eb @@ -19,7 +19,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['include/X11/extensions/Xdamage.h', 'lib/libXdamage.so', 'lib/libXdamage.a'], + 'files': ['include/X11/extensions/Xdamage.h', 'lib/libXdamage.%s' % SHLIB_EXT, 'lib/libXdamage.a'], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXdamage/libXdamage-1.1.4-intel-2015a.eb b/easybuild/easyconfigs/l/libXdamage/libXdamage-1.1.4-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..afb05aa782d999e92299ebde8e5ac513457a86e2 --- /dev/null +++ b/easybuild/easyconfigs/l/libXdamage/libXdamage-1.1.4-intel-2015a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'libXdamage' +version = '1.1.4' +pyver = '-Python-2.7.9' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X Damage extension library""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +dependencies = [ + ('libX11', '1.6.3', pyver), + ('libxcb', '1.11', pyver), + ('libXau', '1.0.8'), +] + +sanity_check_paths = { + 'files': ['include/X11/extensions/Xdamage.h', 'lib/libXdamage.so', 'lib/libXdamage.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXdamage/libXdamage-1.1.4-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/l/libXdamage/libXdamage-1.1.4-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..8cb91c68012a7ee3adc9f8a0fe1247ad945fc3b0 --- /dev/null +++ b/easybuild/easyconfigs/l/libXdamage/libXdamage-1.1.4-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'libXdamage' +version = '1.1.4' +versionsuffix = '-Python-2.7.11' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X Damage extension library""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +dependencies = [ + ('libX11', '1.6.3', versionsuffix), + ('libxcb', '1.11.1', versionsuffix), + ('libXau', '1.0.8'), +] + +sanity_check_paths = { + 'files': ['include/X11/extensions/Xdamage.h', 'lib/libXdamage.so', 'lib/libXdamage.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXdamage/libXdamage-1.1.4-intel-2015b.eb b/easybuild/easyconfigs/l/libXdamage/libXdamage-1.1.4-intel-2015b.eb index b2eabd0f14c09e664e42ede65169653d2fc432ea..1ede837784e448a3b39a70bcee3fef0bd0a5de7a 100644 --- a/easybuild/easyconfigs/l/libXdamage/libXdamage-1.1.4-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libXdamage/libXdamage-1.1.4-intel-2015b.eb @@ -18,7 +18,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['include/X11/extensions/Xdamage.h', 'lib/libXdamage.so', 'lib/libXdamage.a'], + 'files': ['include/X11/extensions/Xdamage.h', 'lib/libXdamage.%s' % SHLIB_EXT, 'lib/libXdamage.a'], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXdamage/libXdamage-1.1.4-intel-2016a.eb b/easybuild/easyconfigs/l/libXdamage/libXdamage-1.1.4-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..bc72561b6e0a46282df0e90e2d59abd0eb44deea --- /dev/null +++ b/easybuild/easyconfigs/l/libXdamage/libXdamage-1.1.4-intel-2016a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libXdamage' +version = '1.1.4' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X Damage extension library""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +dependencies = [ + ('libX11', '1.6.3'), + ('libxcb', '1.11.1'), + ('libXau', '1.0.8'), +] + +sanity_check_paths = { + 'files': ['include/X11/extensions/Xdamage.h', 'lib/libXdamage.%s' % SHLIB_EXT, 'lib/libXdamage.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2014b.eb b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2014b.eb index a15cb924db694aad5db4845a8d283fb7b0b0d219..735a0391abffd08d8c9c8d6a79dd8bcaea45739d 100644 --- a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.1-intel-2014b.eb @@ -18,7 +18,7 @@ builddependencies = [ ('xproto', '7.0.26'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['%(name)s.a', '%(name)s.so']], + 'files': ['lib/%(name)s.a', 'lib/%%(name)s.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-goolf-1.5.14.eb index dfac851674132272e7ce692adefc3d8950ba0768..cc513f2315aedf275183f042cf6dd839d6626ad8 100644 --- a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-goolf-1.5.14.eb @@ -18,7 +18,7 @@ builddependencies = [ ('xproto', '7.0.27'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['%(name)s.a', '%(name)s.so']], + 'files': ['lib/%(name)s.a', 'lib/%%(name)s.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-intel-2015a.eb b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-intel-2015a.eb index 0bcd783d04cc0dad4ef71781c53254cbaed0e26b..79416debddbfd359a5066c65424137059358e1f9 100644 --- a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-intel-2015a.eb @@ -18,7 +18,7 @@ builddependencies = [ ('xproto', '7.0.27'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['%(name)s.a', '%(name)s.so']], + 'files': ['lib/%(name)s.a', 'lib/%%(name)s.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-intel-2015b.eb b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-intel-2015b.eb index e4f8395c43f0bc6ac521b639e45cb01b18dcb46b..93de3908f000986abdaeb6fc0ad9ccfd0341ebfb 100644 --- a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-intel-2015b.eb @@ -18,7 +18,7 @@ builddependencies = [ ('xproto', '7.0.28'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['%(name)s.a', '%(name)s.so']], + 'files': ['lib/%(name)s.a', 'lib/%%(name)s.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-intel-2016a.eb b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..24fc239d5ebde295fab3546a4a1a758b9600c629 --- /dev/null +++ b/easybuild/easyconfigs/l/libXdmcp/libXdmcp-1.1.2-intel-2016a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libXdmcp' +version = '1.1.2' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """The libXdmcp package contains a library implementing the X Display Manager Control Protocol. This is +useful for allowing clients to interact with the X Display Manager. +""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +builddependencies = [ + ('xproto', '7.0.28'), +] +sanity_check_paths = { + 'files': ['lib/%(name)s.a', 'lib/%%(name)s.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-foss-2014b-Python-2.7.8.eb index 2ed55c95cd52ea153b6e654a2a77d48739448f26..4ef33fe4796e32a8f15e6abddcca6f158b7d592a 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-foss-2014b-Python-2.7.8.eb @@ -17,16 +17,16 @@ builddependencies = [ ('kbproto', '1.0.6'), ] dependencies = [ - ('xproto','7.0.26'), + ('xproto', '7.0.26'), ('libX11', '1.6.2', versionsuffix), ('xextproto', '7.3.0'), ] sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', - 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', - ] + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.4.10.eb index 4a8d61c2665b6d1c722e76524f00832847d27dd3..2584eff6b6155b4e72af31dae625f1654fec9eb1 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-goolf-1.4.10.eb @@ -13,16 +13,16 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] dependencies = [ - ('xproto','7.0.23'), + ('xproto', '7.0.23'), ('libX11', '1.6.1'), ('xextproto', '7.2.1'), ] sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', - 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', - ] + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-4.1.13.eb index 638857be648ec6115e505f38a324b3ed9125e985..b016a23bf82b388746f9121731131ce5fa515c39 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-4.1.13.eb @@ -13,16 +13,16 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] dependencies = [ - ('xproto','7.0.23'), + ('xproto', '7.0.23'), ('libX11', '1.6.1'), ('xextproto', '7.2.1'), ] sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', - 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', - ] + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-5.3.0.eb index c45e32b915b9378754d5048c2ac24ea954b9cd57..e25402f03d5ad2628ddcc48f65f0e2c63ecc57b1 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-ictce-5.3.0.eb @@ -13,16 +13,16 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] dependencies = [ - ('xproto','7.0.23'), + ('xproto', '7.0.23'), ('libX11', '1.6.1'), ('xextproto', '7.2.1'), ] sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', - 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', - ] + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b-Python-2.7.8.eb index 4dd886a4bf04af97f8d91858786c645be62d5b0a..70f0ca40eab609f67e764c1edd28f64c66836e10 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b-Python-2.7.8.eb @@ -15,7 +15,7 @@ source_urls = [XORG_LIB_SOURCE] versionsuffix = '-Python-2.7.8' builddependencies = [ ('kbproto', '1.0.6'), - ('xproto','7.0.26'), + ('xproto', '7.0.26'), ('xextproto', '7.3.0'), ] dependencies = [ @@ -24,9 +24,9 @@ dependencies = [ sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', - 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', - ] + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b.eb index 8ff72de9ba57e171f53f1ed993c948f5f0bba37c..1eeae06c66d2b5b79961527fc7b1668ffcd3b04a 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.2-intel-2014b.eb @@ -18,15 +18,15 @@ dependencies = [ ] builddependencies = [ - ('xproto','7.0.26'), + ('xproto', '7.0.26'), ('xextproto', '7.2.1'), ] sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', - 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', - ] + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.3-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-goolf-1.5.14.eb index 63124eca9a2591adea655b2cfe0369868a432725..f5d31320ddbee49261ed4016dcf4f41c24f5c000 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-goolf-1.5.14.eb @@ -24,9 +24,9 @@ dependencies = [ sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', - 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', - ] + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015a-Python-2.7.10.eb index a959a12b0ade1d798c8452b1a08e98d1e73b845e..fea0b330b99710ce3e39220e175ae7aaf70974ac 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015a-Python-2.7.10.eb @@ -25,9 +25,9 @@ dependencies = [ sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', - 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', - ] + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015a.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015a.eb index 7499144fec3c55bd573806143ae5e2d69204efa7..c076690abe4da871c64288d82729c17c1924848b 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015a.eb @@ -24,9 +24,9 @@ dependencies = [ sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', - 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', - ] + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..23544e2ee33727185a21dda798561a31e8754b36 --- /dev/null +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'libXext' +version = '1.3.3' +versionsuffix = '-Python-2.7.11' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """Common X Extensions library""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +builddependencies = [ + ('xproto', '7.0.28'), + ('xextproto', '7.3.0'), +] + +dependencies = [ + ('libX11', '1.6.3', versionsuffix), + ('libXdmcp', '1.1.2'), +] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015b.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015b.eb index 3b75bb1efad209ff6ae2acb2d9993c248ed11e51..93ffb79a95543fc3edab3697f6d404b61a979720 100644 --- a/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2015b.eb @@ -24,9 +24,9 @@ dependencies = [ sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', - 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', - ] + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] ], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2016a.eb b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..3e89327b588652cdf88285d9f631460b8e3b4eb4 --- /dev/null +++ b/easybuild/easyconfigs/l/libXext/libXext-1.3.3-intel-2016a.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'libXext' +version = '1.3.3' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """Common X Extensions library""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/lib/'] + +builddependencies = [ + ('xproto', '7.0.28'), + ('xextproto', '7.3.0'), +] + +dependencies = [ + ('libX11', '1.6.3'), +] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'dpms.h', 'extutil.h', 'MITMisc.h', 'multibuf.h', 'security.h', 'shape.h', 'sync.h', 'Xag.h', 'Xcup.h', + 'Xdbe.h', 'XEVI.h', 'Xext.h', 'Xge.h', 'XLbx.h', 'XShm.h', 'xtestext1.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-goolf-1.4.10.eb index 4f783695b31421045c09129c577d854c84b2ba1d..aa1121d88143051fc2b3caf2e89ac7e376279902 100644 --- a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-goolf-1.4.10.eb @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/extensions/Xfixes.h', 'lib/libXfixes.a', 'lib/libXfixes.so'], - 'dirs' : [], + 'files': ['include/X11/extensions/Xfixes.h', 'lib/libXfixes.a', 'lib/libXfixes.%s' % SHLIB_EXT], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-4.1.13.eb index 9fb8e9f3f9d9ad498ae9e3a8a34fde57efa8f4dd..67b2754c020a45257cce8444bbb0fd847af17d49 100644 --- a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-4.1.13.eb @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/extensions/Xfixes.h', 'lib/libXfixes.a', 'lib/libXfixes.so'], - 'dirs' : [], + 'files': ['include/X11/extensions/Xfixes.h', 'lib/libXfixes.a', 'lib/libXfixes.%s' % SHLIB_EXT], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-5.3.0.eb index adfb7e8af0c3b165a4b22c95561ae0da05446f10..e22050059eaf8daf45732dafd09ac20cc6fe081e 100644 --- a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-ictce-5.3.0.eb @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/extensions/Xfixes.h', 'lib/libXfixes.a', 'lib/libXfixes.so'], - 'dirs' : [], + 'files': ['include/X11/extensions/Xfixes.h', 'lib/libXfixes.a', 'lib/libXfixes.%s' % SHLIB_EXT], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-intel-2015a.eb b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-intel-2015a.eb index 3129ec62b114c097d13f74a946cd86458666f6f6..fd77718af896d91da7e63ed593149bd7ef7e74a5 100644 --- a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-intel-2015a.eb @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/extensions/Xfixes.h', 'lib/libXfixes.a', 'lib/libXfixes.so'], - 'dirs' : [], + 'files': ['include/X11/extensions/Xfixes.h', 'lib/libXfixes.a', 'lib/libXfixes.%s' % SHLIB_EXT], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-intel-2015b.eb b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-intel-2015b.eb index 6a78af91162f19957d54ed8ee563a8d087490ec5..35d7f6f2848a57080aa914f0ea7fd457e4c72bf2 100644 --- a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-intel-2015b.eb @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/extensions/Xfixes.h', 'lib/libXfixes.a', 'lib/libXfixes.so'], - 'dirs' : [], + 'files': ['include/X11/extensions/Xfixes.h', 'lib/libXfixes.a', 'lib/libXfixes.%s' % SHLIB_EXT], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-intel-2016a.eb b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..3dd084da608f66d69538186f7f973b7c6a84e14b --- /dev/null +++ b/easybuild/easyconfigs/l/libXfixes/libXfixes-5.0.1-intel-2016a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libXfixes' +version = '5.0.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X Fixes extension library""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('fixesproto', '5.0'), + ('xextproto', '7.3.0'), +] + +sanity_check_paths = { + 'files': ['include/X11/extensions/Xfixes.h', 'lib/libXfixes.a', 'lib/libXfixes.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXfont/libXfont-1.5.1-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/l/libXfont/libXfont-1.5.1-intel-2015a-Python-2.7.10.eb index c14d0fe75e7fcc8fcae9ff657274648ee461d4ef..e90ae888d780c7b2bddac25f65eaea11fd7403c9 100644 --- a/easybuild/easyconfigs/l/libXfont/libXfont-1.5.1-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/l/libXfont/libXfont-1.5.1-intel-2015a-Python-2.7.10.eb @@ -23,7 +23,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libXfont.so', 'lib/libXfont.a'], + 'files': ['lib/libXfont.%s' % SHLIB_EXT, 'lib/libXfont.a'], 'dirs': ['include/X11/fonts'], } diff --git a/easybuild/easyconfigs/l/libXfont/libXfont-1.5.1-intel-2015a.eb b/easybuild/easyconfigs/l/libXfont/libXfont-1.5.1-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..662f56c3c5d9f91745dc68703e53ca260a77ba55 --- /dev/null +++ b/easybuild/easyconfigs/l/libXfont/libXfont-1.5.1-intel-2015a.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'libXfont' +version = '1.5.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X font libary""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('fontsproto', '2.1.3'), + ('xproto', '7.0.27'), + ('xtrans', '1.3.5'), + ('libfontenc', '1.1.3'), +] +dependencies = [ + ('libX11', '1.6.3', '-Python-2.7.9'), +] + +sanity_check_paths = { + 'files': ['lib/libXfont.so', 'lib/libXfont.a'], + 'dirs': ['include/X11/fonts'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXfont/libXfont-1.5.1-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/l/libXfont/libXfont-1.5.1-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..41f49602df8c56b27f62289ef624c005e2de412e --- /dev/null +++ b/easybuild/easyconfigs/l/libXfont/libXfont-1.5.1-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libXfont' +version = '1.5.1' +versionsuffix = '-Python-2.7.11' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X font libary""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('fontsproto', '2.1.3'), + ('xproto', '7.0.28'), + ('xtrans', '1.3.5'), + ('xorg-macros', '1.19.0'), + ('libfontenc', '1.1.3'), +] +dependencies = [ + ('libX11', '1.6.3', versionsuffix), + ('freetype', '2.6.1'), +] + +sanity_check_paths = { + 'files': ['lib/libXfont.so', 'lib/libXfont.a'], + 'dirs': ['include/X11/fonts'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXfont/libXfont-1.5.1-intel-2015b.eb b/easybuild/easyconfigs/l/libXfont/libXfont-1.5.1-intel-2015b.eb index 8d3a7d49e988b4d9b8f2816c961a383ed918db44..964bfb9cde466954dbab50e6032ce2ffdfdc867a 100644 --- a/easybuild/easyconfigs/l/libXfont/libXfont-1.5.1-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libXfont/libXfont-1.5.1-intel-2015b.eb @@ -24,7 +24,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libXfont.so', 'lib/libXfont.a'], + 'files': ['lib/libXfont.%s' % SHLIB_EXT, 'lib/libXfont.a'], 'dirs': ['include/X11/fonts'], } diff --git a/easybuild/easyconfigs/l/libXfont/libXfont-1.5.1-intel-2016a.eb b/easybuild/easyconfigs/l/libXfont/libXfont-1.5.1-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..027bd58513374efc8332c4f17f8c0c47b60ce4da --- /dev/null +++ b/easybuild/easyconfigs/l/libXfont/libXfont-1.5.1-intel-2016a.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'libXfont' +version = '1.5.1' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X font libary""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('fontsproto', '2.1.3'), + ('xproto', '7.0.28'), + ('xtrans', '1.3.5'), + ('xorg-macros', '1.19.0'), + ('libfontenc', '1.1.3'), +] +dependencies = [ + ('libX11', '1.6.3'), + ('freetype', '2.6.2'), +] + +sanity_check_paths = { + 'files': ['lib/libXfont.%s' % SHLIB_EXT, 'lib/libXfont.a'], + 'dirs': ['include/X11/fonts'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-goolf-1.4.10.eb index 989ca225d4c2ed489c806054ca10671e093aff32..8b0e336093596de3b852b87c8fc84d6244ebe118 100644 --- a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-goolf-1.4.10.eb @@ -20,8 +20,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/extensions/XInput.h', 'include/X11/extensions/XInput2.h', 'lib/libXi.so', 'lib/libXi.a'], - 'dirs' : [], + 'files': ['include/X11/extensions/XInput.h', 'include/X11/extensions/XInput2.h', 'lib/libXi.%s' % SHLIB_EXT, 'lib/libXi.a'], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-4.1.13.eb index f1233c793cc0480af2b8237ae9cb48504a8a304e..dc21c6f8e90969ae7206b2fbcc6182238dffd577 100644 --- a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-4.1.13.eb @@ -20,8 +20,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/extensions/XInput.h', 'include/X11/extensions/XInput2.h', 'lib/libXi.so', 'lib/libXi.a'], - 'dirs' : [], + 'files': ['include/X11/extensions/XInput.h', 'include/X11/extensions/XInput2.h', 'lib/libXi.%s' % SHLIB_EXT, 'lib/libXi.a'], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-5.3.0.eb index 1fc075646238f712f34a5568569f4ba375cc0920..0f718686632e59a349ead0592226301dae3d44e0 100644 --- a/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXi/libXi-1.7.2-ictce-5.3.0.eb @@ -20,8 +20,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/extensions/XInput.h', 'include/X11/extensions/XInput2.h', 'lib/libXi.so', 'lib/libXi.a'], - 'dirs' : [], + 'files': ['include/X11/extensions/XInput.h', 'include/X11/extensions/XInput2.h', 'lib/libXi.%s' % SHLIB_EXT, 'lib/libXi.a'], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015a.eb b/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015a.eb index 20988d4e6e69b2efc0e0d25e070b2e45710d4e18..6943d3e084c3390e2243d96887d7cf344f1a29c5 100644 --- a/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015a.eb @@ -19,8 +19,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/extensions/XInput.h', 'include/X11/extensions/XInput2.h', 'lib/libXi.so', 'lib/libXi.a'], - 'dirs' : [], + 'files': ['include/X11/extensions/XInput.h', 'include/X11/extensions/XInput2.h', 'lib/libXi.%s' % SHLIB_EXT, 'lib/libXi.a'], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..eaa232fe89b5623e244200c86516ddb54de93610 --- /dev/null +++ b/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' +name = 'libXi' +version = '1.7.4' +versionsuffix = '-Python-2.7.11' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """LibXi provides an X Window System client interface to the XINPUT extension to the X protocol.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +dependencies = [ + ('xproto', '7.0.28'), + ('xextproto', '7.3.0'), + ('libXext', '1.3.3', versionsuffix), + ('inputproto', '2.3.1'), + ('libXfixes', '5.0.1'), +] + +sanity_check_paths = { + 'files': ['include/X11/extensions/XInput.h', 'include/X11/extensions/XInput2.h', 'lib/libXi.so', 'lib/libXi.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015b.eb b/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015b.eb index 05e88b068fd44d6cb7ef6bb7aa7a943275208897..0ed8e42a2078618241a5c260eead5a7814d8ef01 100644 --- a/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libXi/libXi-1.7.4-intel-2015b.eb @@ -19,8 +19,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/extensions/XInput.h', 'include/X11/extensions/XInput2.h', 'lib/libXi.so', 'lib/libXi.a'], - 'dirs' : [], + 'files': ['include/X11/extensions/XInput.h', 'include/X11/extensions/XInput2.h', 'lib/libXi.%s' % SHLIB_EXT, 'lib/libXi.a'], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-foss-2014b.eb b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-foss-2014b.eb index aa81cc7f3c341ba863ba8eabc61e8ca6c141526b..0364d9613fce81cd6baec874ce5baf706d843d61 100644 --- a/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-foss-2014b.eb +++ b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-foss-2014b.eb @@ -18,8 +18,8 @@ builddependencies = [ ('xextproto', '7.3.0'), ] dependencies = [ - ('xproto','7.0.26'), - ('libX11', '1.6.2', pythonversion ), + ('xproto', '7.0.26'), + ('libX11', '1.6.2', pythonversion), ('libXext', '1.3.2', pythonversion), ] diff --git a/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2014b.eb b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2014b.eb index bb8afc5c0c5e41db225db4a04039fcf3f80f5f79..5df23592a5d362b4fe237d351cb3eb84bde7ff59 100644 --- a/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2014b.eb @@ -18,8 +18,8 @@ builddependencies = [ ('xextproto', '7.3.0'), ] dependencies = [ - ('xproto','7.0.26'), - ('libX11', '1.6.2', pythonversion ), + ('xproto', '7.0.26'), + ('libX11', '1.6.2', pythonversion), ('libXext', '1.3.2', pythonversion), ] diff --git a/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..0dc7137ea0068d09e7c64364bfbbc9f7150597d7 --- /dev/null +++ b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libXinerama' +version = '1.1.3' +versionsuffix = '-Python-2.7.11' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """Xinerama multiple monitor library""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('kbproto', '1.0.7'), + ('xineramaproto', '1.2.1'), + ('xextproto', '7.3.0'), +] + +dependencies = [ + ('xproto', '7.0.28'), + ('libX11', '1.6.3', versionsuffix), + ('libXext', '1.3.3', versionsuffix), +] + +sanity_check_paths = { + 'files': ['lib/libXinerama.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2015b.eb b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2015b.eb index c836ab425a772d1dba0c93194cd4463d7b000ca3..0325a41bd381900a2aa838987168332c1fa25d70 100644 --- a/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libXinerama/libXinerama-1.1.3-intel-2015b.eb @@ -18,7 +18,7 @@ builddependencies = [ ] dependencies = [ - ('xproto','7.0.28'), + ('xproto', '7.0.28'), ('libX11', '1.6.3', '-Python-2.7.10'), ('libXext', '1.3.3'), ] diff --git a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-goolf-1.4.10.eb index 8db3290cf386fb1b6b66d4f76590bf14db251719..2aab0fa578ed82bc9f88c6df81014f8d92098f00 100644 --- a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-goolf-1.4.10.eb @@ -18,11 +18,8 @@ dependencies = [ ('libXt', '1.1.4'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in [ - '%(name)s.a', '%(name)s.so', - ] - ], - 'dirs': [] + 'files': ['lib/%s' % x for x in ['%(name)s.a', '%%(name)s.%s' % SHLIB_EXT]], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-goolf-1.5.14.eb index 2c502db1e90f938684d142a1d7d70ab0516a2339..f13c6ad715ca2d2e7ab1993fe5e4c0cf6cd2532d 100644 --- a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-goolf-1.5.14.eb @@ -18,11 +18,8 @@ dependencies = [ ('libXt', '1.1.4'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in [ - '%(name)s.a', '%(name)s.so', - ] - ], - 'dirs': [] + 'files': ['lib/%s' % x for x in ['%(name)s.a', '%%(name)s.%s' % SHLIB_EXT]], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-4.1.13.eb index 5ab7c61a441e5916f149617e91ee7d348ed850fa..3bb4dae2016fcbe96ad56d8a7d49f1201d989e56 100644 --- a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-4.1.13.eb @@ -18,7 +18,7 @@ dependencies = [ ('libXpm', '3.5.11'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['%(name)s.a', '%(name)s.so']], + 'files': ['lib/%s' % x for x in ['%(name)s.a', '%%(name)s.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-5.3.0.eb index df5f4eeafacdd1fc621cef9b92f6120c80b6e926..2f2b809d1760208026e046cf52041e565dbebab0 100644 --- a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-ictce-5.3.0.eb @@ -18,7 +18,7 @@ dependencies = [ ('libXpm', '3.5.11'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['%(name)s.a', '%(name)s.so']], + 'files': ['lib/%s' % x for x in ['%(name)s.a', '%%(name)s.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-intel-2015a-libX11-1.6.3.eb b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-intel-2015a-libX11-1.6.3.eb index 083f86b1a3805db508cf9038bf42d57e7d772ff9..de13f643a237f41f52b46e2eca47599c8426295a 100644 --- a/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-intel-2015a-libX11-1.6.3.eb +++ b/easybuild/easyconfigs/l/libXmu/libXmu-1.1.2-intel-2015a-libX11-1.6.3.eb @@ -19,7 +19,7 @@ dependencies = [ ('libXpm', '3.5.11'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['%(name)s.a', '%(name)s.so']], + 'files': ['lib/%s' % x for x in ['%(name)s.a', '%%(name)s.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.4.10.eb index b54fb5d0e063b595394dd995a00d860170dad62b..cd4cbda0f259428e6841d0c174d913959dd9f07a 100644 --- a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-goolf-1.4.10.eb @@ -13,17 +13,17 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] builddependencies = [ - ('xextproto', '7.2.1'), - ('printproto', '1.0.5'), + ('xextproto', '7.2.1'), + ('printproto', '1.0.5'), ] dependencies = [ - ('libX11', '1.6.1'), - ('libXext', '1.3.2'), - ('libXau', '1.0.8'), + ('libX11', '1.6.1'), + ('libXext', '1.3.2'), + ('libXau', '1.0.8'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXp.a', 'libXp.so']], + 'files': ['lib/%s' % x for x in ['libXp.a', 'libXp.%s' % SHLIB_EXT]], 'dirs': [] } diff --git a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-4.1.13.eb index aafb0c89662f0a37c287e48344b45086d39c722d..fcb4c60df7a4d92e4608134529e2ff031a00e824 100644 --- a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-4.1.13.eb @@ -13,17 +13,17 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] builddependencies = [ - ('xextproto', '7.2.1'), - ('printproto', '1.0.5'), + ('xextproto', '7.2.1'), + ('printproto', '1.0.5'), ] dependencies = [ - ('libX11', '1.6.1'), - ('libXext', '1.3.2'), - ('libXau', '1.0.8'), + ('libX11', '1.6.1'), + ('libXext', '1.3.2'), + ('libXau', '1.0.8'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXp.a', 'libXp.so']], + 'files': ['lib/%s' % x for x in ['libXp.a', 'libXp.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-5.3.0.eb index 2adf08884bc5110891b78a3345bc6214709959ef..88ac2990ec411219ea4cf59fc82633a307d6b14e 100644 --- a/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXp/libXp-1.0.2-ictce-5.3.0.eb @@ -13,17 +13,17 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] builddependencies = [ - ('xextproto', '7.2.1'), - ('printproto', '1.0.5'), + ('xextproto', '7.2.1'), + ('printproto', '1.0.5'), ] dependencies = [ - ('libX11', '1.6.1'), - ('libXext', '1.3.2'), - ('libXau', '1.0.8'), + ('libX11', '1.6.1'), + ('libXext', '1.3.2'), + ('libXau', '1.0.8'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXp.a', 'libXp.so']], + 'files': ['lib/%s' % x for x in ['libXp.a', 'libXp.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXp/libXp-1.0.3-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXp/libXp-1.0.3-goolf-1.5.14.eb index 9da42c6bbb4edeec019ea6fa348ccddbf22db1c8..e680164e0bcbef4705f58e0ada17ee65d7232782 100644 --- a/easybuild/easyconfigs/l/libXp/libXp-1.0.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libXp/libXp-1.0.3-goolf-1.5.14.eb @@ -13,17 +13,17 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] builddependencies = [ - ('xextproto', '7.3.0'), - ('printproto', '1.0.5'), + ('xextproto', '7.3.0'), + ('printproto', '1.0.5'), ] dependencies = [ - ('libX11', '1.6.3', '-Python-2.7.9'), - ('libXext', '1.3.3'), - ('libXau', '1.0.8'), + ('libX11', '1.6.3', '-Python-2.7.9'), + ('libXext', '1.3.3'), + ('libXau', '1.0.8'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXp.a', 'libXp.so']], + 'files': ['lib/%s' % x for x in ['libXp.a', 'libXp.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXp/libXp-1.0.3-intel-2015a.eb b/easybuild/easyconfigs/l/libXp/libXp-1.0.3-intel-2015a.eb index fe0d5183a55f006871b9afcf11bb52f8653c2aab..da13ac755aa61f2defe8a5be0eec23f08fb293f9 100644 --- a/easybuild/easyconfigs/l/libXp/libXp-1.0.3-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libXp/libXp-1.0.3-intel-2015a.eb @@ -13,18 +13,18 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] builddependencies = [ - ('xextproto', '7.3.0'), - ('printproto', '1.0.5'), + ('xextproto', '7.3.0'), + ('printproto', '1.0.5'), ] dependencies = [ - ('libX11', '1.6.3', '-Python-2.7.9'), - ('libXext', '1.3.3'), - ('libXau', '1.0.8'), + ('libX11', '1.6.3', '-Python-2.7.9'), + ('libXext', '1.3.3'), + ('libXau', '1.0.8'), ] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXp.a', 'libXp.so']], + 'files': ['lib/%s' % x for x in ['libXp.a', 'libXp.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-goolf-1.4.10.eb index 0840f6e06d458849b62d2c4d777bea8da9fea9b0..1e6eb0a853c1c4aa999642e4b2c5d3bb96d4bbe5 100644 --- a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-goolf-1.4.10.eb @@ -15,7 +15,7 @@ source_urls = [XORG_LIB_SOURCE] builddependencies = [('gettext', '0.18.2')] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXpm.a', 'libXpm.so']], + 'files': ['lib/%s' % x for x in ['libXpm.a', 'libXpm.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-goolf-1.5.14.eb index 885a79da5324f5d56807636593d9e73107601d8e..8c000c36ade218c74609897862896cb7f0e2dbab 100644 --- a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-goolf-1.5.14.eb @@ -15,7 +15,7 @@ source_urls = [XORG_LIB_SOURCE] builddependencies = [('gettext', '0.18.2')] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXpm.a', 'libXpm.so']], + 'files': ['lib/%s' % x for x in ['libXpm.a', 'libXpm.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-4.1.13.eb index 076cc39edb1d049bd20c31c3005f9bd56e695186..0d4cd1cee7eb5f91e963d093053578189a80e90a 100644 --- a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-4.1.13.eb @@ -15,7 +15,7 @@ source_urls = [XORG_LIB_SOURCE] builddependencies = [('gettext', '0.18.2')] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXpm.a', 'libXpm.so']], + 'files': ['lib/%s' % x for x in ['libXpm.a', 'libXpm.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-5.3.0.eb index 5bb46ff15c9319db7f7ce76f6241df41b30b2080..306a9bf1d29b4b417d8d7bd995e2a1aad37e81ce 100644 --- a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-ictce-5.3.0.eb @@ -15,7 +15,7 @@ source_urls = [XORG_LIB_SOURCE] builddependencies = [('gettext', '0.18.2')] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXpm.a', 'libXpm.so']], + 'files': ['lib/%s' % x for x in ['libXpm.a', 'libXpm.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-intel-2015a.eb b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-intel-2015a.eb index 69fda1c84a0f87d164d49cfc10c227069788092e..b38602a722f9dda0cd31a0d39453afcd015f7006 100644 --- a/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libXpm/libXpm-3.5.11-intel-2015a.eb @@ -15,7 +15,7 @@ source_urls = [XORG_LIB_SOURCE] builddependencies = [('gettext', '0.19.4', '', ('GCC', '4.9.2'))] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXpm.a', 'libXpm.so']], + 'files': ['lib/%s' % x for x in ['libXpm.a', 'libXpm.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXrandr/libXrandr-1.5.0-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/l/libXrandr/libXrandr-1.5.0-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..6b526bdf5290088842e50c6f51a08cfffc08ffb3 --- /dev/null +++ b/easybuild/easyconfigs/l/libXrandr/libXrandr-1.5.0-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'libXrandr' +version = '1.5.0' +versionsuffix = '-Python-2.7.11' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X Resize, Rotate and Reflection extension library""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('randrproto', '1.5.0'), + ('renderproto', '0.11'), + ('xextproto', '7.3.0'), +] + +dependencies = [ + ('libX11', '1.6.3', versionsuffix), + ('libXext', '1.3.3', versionsuffix), + ('libXrender', '0.9.9', versionsuffix), +] + +sanity_check_paths = { + 'files': ['lib/libXrandr.so', 'lib/libXrandr.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXrandr/libXrandr-1.5.0-intel-2015b.eb b/easybuild/easyconfigs/l/libXrandr/libXrandr-1.5.0-intel-2015b.eb index 400d476d8db91e046557033a0da8edbf445f3de1..e95be8e09d0617c51ae3ab2580fad2b7f5c18837 100644 --- a/easybuild/easyconfigs/l/libXrandr/libXrandr-1.5.0-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libXrandr/libXrandr-1.5.0-intel-2015b.eb @@ -24,7 +24,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libXrandr.so', 'lib/libXrandr.a'], + 'files': ['lib/libXrandr.%s' % SHLIB_EXT, 'lib/libXrandr.a'], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXrender/libXrender-0.9.9-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/l/libXrender/libXrender-0.9.9-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..5d4c3536fb9117c6dcf5fb32b21fa5c8004a6888 --- /dev/null +++ b/easybuild/easyconfigs/l/libXrender/libXrender-0.9.9-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'libXrender' +version = '0.9.9' +versionsuffix = '-Python-2.7.11' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """X11 client-side library""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('kbproto', '1.0.7'), + ('renderproto', '0.11'), +] + +dependencies = [ + ('libX11', '1.6.3', versionsuffix), +] + +sanity_check_paths = { + 'files': ['lib/libXrender.a'], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-goolf-1.4.10.eb index 0a3d6df938d58c146e2af5072712e1647ad97682..a620b54e1373b0166c5215b645027755c8d1d1e6 100644 --- a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-goolf-1.4.10.eb @@ -22,15 +22,15 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in [ + 'files': ['include/X11/%s' % x for x in [ 'CallbackI.h', 'CompositeP.h', 'Constraint.h', 'Core.h', 'CreateI.h', 'HookObjI.h', 'Intrinsic.h', 'IntrinsicP.h', 'ObjectP.h', 'RectObj.h', 'ResConfigP.h', 'SelectionI.h', 'ShellI.h', 'StringDefs.h', 'TranslateI.h', 'Vendor.h', 'Xtos.h', 'Composite.h', 'ConstrainP.h', 'ConvertI.h', 'CoreP.h', 'EventI.h', 'InitialI.h', 'IntrinsicI.h', 'Object.h', 'PassivGraI.h', 'RectObjP.h', 'ResourceI.h', 'Shell.h', 'ShellP.h', 'ThreadsI.h', 'VarargsI.h', 'VendorP.h', - ] + ] ], - 'dirs' : [], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-goolf-1.5.14.eb index d22341b9fce55af2032261d8c2a6aadf70bd9535..a04d9667434eb9e4eb820360e75ccfbcfcf13245 100644 --- a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-goolf-1.5.14.eb @@ -22,15 +22,15 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in [ + 'files': ['include/X11/%s' % x for x in [ 'CallbackI.h', 'CompositeP.h', 'Constraint.h', 'Core.h', 'CreateI.h', 'HookObjI.h', 'Intrinsic.h', 'IntrinsicP.h', 'ObjectP.h', 'RectObj.h', 'ResConfigP.h', 'SelectionI.h', 'ShellI.h', 'StringDefs.h', 'TranslateI.h', 'Vendor.h', 'Xtos.h', 'Composite.h', 'ConstrainP.h', 'ConvertI.h', 'CoreP.h', 'EventI.h', 'InitialI.h', 'IntrinsicI.h', 'Object.h', 'PassivGraI.h', 'RectObjP.h', 'ResourceI.h', 'Shell.h', 'ShellP.h', 'ThreadsI.h', 'VarargsI.h', 'VendorP.h', - ] + ] ], - 'dirs' : [], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-4.1.13.eb index 0419ecbed294a040af05fc75e833a8012a1e5e39..6224c7a3e21815aff26ed7fee3256f3eacee13d9 100644 --- a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-4.1.13.eb @@ -22,15 +22,15 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in [ + 'files': ['include/X11/%s' % x for x in [ 'CallbackI.h', 'CompositeP.h', 'Constraint.h', 'Core.h', 'CreateI.h', 'HookObjI.h', 'Intrinsic.h', 'IntrinsicP.h', 'ObjectP.h', 'RectObj.h', 'ResConfigP.h', 'SelectionI.h', 'ShellI.h', 'StringDefs.h', 'TranslateI.h', 'Vendor.h', 'Xtos.h', 'Composite.h', 'ConstrainP.h', 'ConvertI.h', 'CoreP.h', 'EventI.h', 'InitialI.h', 'IntrinsicI.h', 'Object.h', 'PassivGraI.h', 'RectObjP.h', 'ResourceI.h', 'Shell.h', 'ShellP.h', 'ThreadsI.h', 'VarargsI.h', 'VendorP.h', - ] + ] ], - 'dirs' : [], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-5.3.0.eb index 978dd4006b61d796d528fd51b8d68536238144c7..6fbde3ec7e2bc00f8b0c56e83209fb1413f3f565 100644 --- a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-ictce-5.3.0.eb @@ -22,15 +22,15 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in [ + 'files': ['include/X11/%s' % x for x in [ 'CallbackI.h', 'CompositeP.h', 'Constraint.h', 'Core.h', 'CreateI.h', 'HookObjI.h', 'Intrinsic.h', 'IntrinsicP.h', 'ObjectP.h', 'RectObj.h', 'ResConfigP.h', 'SelectionI.h', 'ShellI.h', 'StringDefs.h', 'TranslateI.h', 'Vendor.h', 'Xtos.h', 'Composite.h', 'ConstrainP.h', 'ConvertI.h', 'CoreP.h', 'EventI.h', 'InitialI.h', 'IntrinsicI.h', 'Object.h', 'PassivGraI.h', 'RectObjP.h', 'ResourceI.h', 'Shell.h', 'ShellP.h', 'ThreadsI.h', 'VarargsI.h', 'VendorP.h', - ] + ] ], - 'dirs' : [], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2014b.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2014b.eb index f903c018725dc61eaaa3d4700809914e277f9d21..6f7913580175e47fb1fdc3415c4a5831f52773a5 100644 --- a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2014b.eb @@ -25,15 +25,15 @@ builddependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in [ + 'files': ['include/X11/%s' % x for x in [ 'CallbackI.h', 'CompositeP.h', 'Constraint.h', 'Core.h', 'CreateI.h', 'HookObjI.h', 'Intrinsic.h', 'IntrinsicP.h', 'ObjectP.h', 'RectObj.h', 'ResConfigP.h', 'SelectionI.h', 'ShellI.h', 'StringDefs.h', 'TranslateI.h', 'Vendor.h', 'Xtos.h', 'Composite.h', 'ConstrainP.h', 'ConvertI.h', 'CoreP.h', 'EventI.h', 'InitialI.h', 'IntrinsicI.h', 'Object.h', 'PassivGraI.h', 'RectObjP.h', 'ResourceI.h', 'Shell.h', 'ShellP.h', 'ThreadsI.h', 'VarargsI.h', 'VendorP.h', - ] + ] ], - 'dirs' : [], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2015a-Python-2.7.10.eb index 85062e12a32c37d19f07dd2c2f912d6151858df3..ba1f626efba94730ada6fda5eed070691ff65cfb 100644 --- a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2015a-Python-2.7.10.eb @@ -26,15 +26,15 @@ builddependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in [ + 'files': ['include/X11/%s' % x for x in [ 'CallbackI.h', 'CompositeP.h', 'Constraint.h', 'Core.h', 'CreateI.h', 'HookObjI.h', 'Intrinsic.h', 'IntrinsicP.h', 'ObjectP.h', 'RectObj.h', 'ResConfigP.h', 'SelectionI.h', 'ShellI.h', 'StringDefs.h', 'TranslateI.h', 'Vendor.h', 'Xtos.h', 'Composite.h', 'ConstrainP.h', 'ConvertI.h', 'CoreP.h', 'EventI.h', 'InitialI.h', 'IntrinsicI.h', 'Object.h', 'PassivGraI.h', 'RectObjP.h', 'ResourceI.h', 'Shell.h', 'ShellP.h', 'ThreadsI.h', 'VarargsI.h', 'VendorP.h', - ] + ] ], - 'dirs' : [], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2015a-libX11-1.6.3.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2015a-libX11-1.6.3.eb index 507c378340f0f54124909e8297dd53ea7202c3dc..60c2f3530476cc6fca92bfe59335138114ecad3e 100644 --- a/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2015a-libX11-1.6.3.eb +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.4-intel-2015a-libX11-1.6.3.eb @@ -27,15 +27,15 @@ builddependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in [ + 'files': ['include/X11/%s' % x for x in [ 'CallbackI.h', 'CompositeP.h', 'Constraint.h', 'Core.h', 'CreateI.h', 'HookObjI.h', 'Intrinsic.h', 'IntrinsicP.h', 'ObjectP.h', 'RectObj.h', 'ResConfigP.h', 'SelectionI.h', 'ShellI.h', 'StringDefs.h', 'TranslateI.h', 'Vendor.h', 'Xtos.h', 'Composite.h', 'ConstrainP.h', 'ConvertI.h', 'CoreP.h', 'EventI.h', 'InitialI.h', 'IntrinsicI.h', 'Object.h', 'PassivGraI.h', 'RectObjP.h', 'ResourceI.h', 'Shell.h', 'ShellP.h', 'ThreadsI.h', 'VarargsI.h', 'VendorP.h', - ] + ] ], - 'dirs' : [], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.5-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.5-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..347a5460d3b864943646cf7a621ef369a07f9255 --- /dev/null +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.5-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,40 @@ +easyblock = 'ConfigureMake' + +name = 'libXt' +version = '1.1.5' +versionsuffix = '-Python-2.7.11' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """libXt provides the X Toolkit Intrinsics, an abstract widget library upon which other toolkits are + based. Xt is the basis for many toolkits, including the Athena widgets (Xaw), and LessTif (a Motif implementation).""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'optarch': True} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +dependencies = [ + ('libSM', '1.2.2'), + ('libICE', '1.0.9'), + ('libX11', '1.6.3', versionsuffix), +] + +builddependencies = [ + ('xproto', '7.0.28'), + ('kbproto', '1.0.7'), +] + +sanity_check_paths = { + 'files': ['include/X11/%s' % x for x in [ + 'CallbackI.h', 'CompositeP.h', 'Constraint.h', 'Core.h', 'CreateI.h', 'HookObjI.h', 'Intrinsic.h', + 'IntrinsicP.h', 'ObjectP.h', 'RectObj.h', 'ResConfigP.h', 'SelectionI.h', 'ShellI.h', 'StringDefs.h', + 'TranslateI.h', 'Vendor.h', 'Xtos.h', 'Composite.h', 'ConstrainP.h', 'ConvertI.h', 'CoreP.h', 'EventI.h', + 'InitialI.h', 'IntrinsicI.h', 'Object.h', 'PassivGraI.h', 'RectObjP.h', 'ResourceI.h', 'Shell.h', 'ShellP.h', + 'ThreadsI.h', 'VarargsI.h', 'VendorP.h', + ] + ], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXt/libXt-1.1.5-intel-2015b.eb b/easybuild/easyconfigs/l/libXt/libXt-1.1.5-intel-2015b.eb index 9454e5904b7222317864e8a455dcc01e58d3c8f3..c0989734a0af507061cf51a422a15fb81270a6b2 100644 --- a/easybuild/easyconfigs/l/libXt/libXt-1.1.5-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libXt/libXt-1.1.5-intel-2015b.eb @@ -25,15 +25,15 @@ builddependencies = [ ] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in [ + 'files': ['include/X11/%s' % x for x in [ 'CallbackI.h', 'CompositeP.h', 'Constraint.h', 'Core.h', 'CreateI.h', 'HookObjI.h', 'Intrinsic.h', 'IntrinsicP.h', 'ObjectP.h', 'RectObj.h', 'ResConfigP.h', 'SelectionI.h', 'ShellI.h', 'StringDefs.h', 'TranslateI.h', 'Vendor.h', 'Xtos.h', 'Composite.h', 'ConstrainP.h', 'ConvertI.h', 'CoreP.h', 'EventI.h', 'InitialI.h', 'IntrinsicI.h', 'Object.h', 'PassivGraI.h', 'RectObjP.h', 'ResourceI.h', 'Shell.h', 'ShellP.h', 'ThreadsI.h', 'VarargsI.h', 'VendorP.h', - ] + ] ], - 'dirs' : [], + 'dirs': [], } moduleclass = 'vis' diff --git a/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-goolf-1.4.10.eb index 21b73fce1cec78b60ffc6c9705a72a21b4993740..e9f3a54d522929fbe72995b3b23cccc23e9f583a 100644 --- a/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-goolf-1.4.10.eb @@ -13,7 +13,7 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXtst.a', 'libXtst.so']], + 'files': ['lib/%s' % x for x in ['libXtst.a', 'libXtst.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-goolf-1.5.14.eb index 9bf21bea7e284aa7d45598abcab2e7ee216d361b..4d722525170fbf86230df7d70197655ea7b3e93b 100644 --- a/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-goolf-1.5.14.eb @@ -13,7 +13,7 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXtst.a', 'libXtst.so']], + 'files': ['lib/%s' % x for x in ['libXtst.a', 'libXtst.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-ictce-4.1.13.eb index 9713052fb643ae878ea284f0fbf247f2a87cc16c..207ab0872f7e51cd970f07d2d2aaa737c4f3d7b7 100644 --- a/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-ictce-4.1.13.eb @@ -13,7 +13,7 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXtst.a', 'libXtst.so']], + 'files': ['lib/%s' % x for x in ['libXtst.a', 'libXtst.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-ictce-5.3.0.eb index 86028b462b8b70635e7fa815e990ae20cc496d3b..fa74f41bf7646909e62b7e6bc98238bb09413517 100644 --- a/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-ictce-5.3.0.eb @@ -13,7 +13,7 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXtst.a', 'libXtst.so']], + 'files': ['lib/%s' % x for x in ['libXtst.a', 'libXtst.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-intel-2015a.eb b/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-intel-2015a.eb index 9bd6332adcfa0b0397fc133ff11da036606b6621..0f5a6e9ec2763f593631027ec1198310b61d08a6 100644 --- a/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libXtst/libXtst-1.2.2-intel-2015a.eb @@ -13,7 +13,7 @@ sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files': ['lib/%s' % x for x in ['libXtst.a', 'libXtst.so']], + 'files': ['lib/%s' % x for x in ['libXtst.a', 'libXtst.%s' % SHLIB_EXT]], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-goolf-1.4.10.eb index 0a754ead09b0687ddc568833da828715cf5d9f75..c1628b831384195a805b0a50588628f0c422ad9e 100644 --- a/easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-goolf-1.4.10.eb @@ -1,5 +1,5 @@ # With <3 for EasyBuild -# +# # EasyConfig for libcircle: # ---------------------------------------------------------------------------- # Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH @@ -23,7 +23,7 @@ sources = ['%(version)s.tar.gz'] source_urls = ['https://github.com/hpc/libcircle/archive/'] sanity_check_paths = { - 'files': ['include/libcircle.h', 'lib/libcircle.a', 'lib/libcircle.so'], + 'files': ['include/libcircle.h', 'lib/libcircle.a', 'lib/libcircle.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-ictce-5.3.0.eb index b03276694bb0ac6fa0dbd651d87c88804a40e0cc..feda1f649b17800bd0263ff4d2716593b8477a9f 100644 --- a/easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libcircle/libcircle-0.2.0-rc.1-ictce-5.3.0.eb @@ -1,5 +1,5 @@ # With <3 for EasyBuild -# +# # EasyConfig for libcircle: # ---------------------------------------------------------------------------- # Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH @@ -23,7 +23,7 @@ sources = ['%(version)s.tar.gz'] source_urls = ['https://github.com/hpc/libcircle/archive/'] sanity_check_paths = { - 'files': ['include/libcircle.h', 'lib/libcircle.a', 'lib/libcircle.so'], + 'files': ['include/libcircle.h', 'lib/libcircle.a', 'lib/libcircle.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libdap/libdap-3.14.0-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/l/libdap/libdap-3.14.0-intel-2015a-Python-2.7.10.eb index 6b99d4fd62ae5601a9e2b7424022ce35893e232d..05588e3a1b286dea34b7c46960476a47695da07c 100644 --- a/easybuild/easyconfigs/l/libdap/libdap-3.14.0-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/l/libdap/libdap-3.14.0-intel-2015a-Python-2.7.10.eb @@ -2,7 +2,7 @@ easyblock = 'ConfigureMake' name = 'libdap' version = '3.14.0' -versionsuffix = "-Python-2.7.10" +versionsuffix = "-Python-2.7.10" homepage = 'http://opendap.org/download/libdap' description = """A C++ SDK which contains an implementation of DAP 2.0 @@ -11,7 +11,7 @@ description = """A C++ SDK which contains an implementation of DAP 2.0 toolchain = {'name': 'intel', 'version': '2015a'} -source_urls = ['http://www.opendap.org/pub/source/'] +source_urls = ['http://www.opendap.org/pub/source/'] sources = [SOURCE_TAR_GZ] patches = ['%(name)s-%(version)s_flex.patch'] @@ -28,7 +28,7 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['bin/getdap', 'bin/getdap4', 'bin/dap-config', 'lib/libdap.a', 'lib/libdap.so'], + 'files': ['bin/getdap', 'bin/getdap4', 'bin/dap-config', 'lib/libdap.a', 'lib/libdap.%s' % SHLIB_EXT], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libdap/libdap-3.14.0-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/l/libdap/libdap-3.14.0-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..7cb10045044af4b9dccbe1bb25f4c6391ed9c9a2 --- /dev/null +++ b/easybuild/easyconfigs/l/libdap/libdap-3.14.0-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'libdap' +version = '3.14.0' +versionsuffix = "-Python-2.7.10" + +homepage = 'http://opendap.org/download/libdap' +description = """A C++ SDK which contains an implementation of DAP 2.0 + and the development versions of DAP3, up to 3.4. + This includes both Client- and Server-side support classes.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://www.opendap.org/pub/source/'] +sources = [SOURCE_TAR_GZ] + +patches = ['%(name)s-%(version)s_flex.patch'] + +builddependencies = [ + ('Bison', '3.0.4'), + ('flex', '2.5.39'), +] + +dependencies = [ + ('cURL', '7.43.0'), + ('libxml2', '2.9.3', versionsuffix), + ('LibUUID', '1.0.3'), +] + +sanity_check_paths = { + 'files': ['bin/getdap', 'bin/getdap4', 'bin/dap-config', 'lib/libdap.a', 'lib/libdap.%s' % SHLIB_EXT], + 'dirs': ['include'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goalf-1.1.0-no-OFED.eb index 92ffc337ddd59b79bfe0667b79d77a7aa1551748..35962e9634d0b963c58eec1948cfe5a121c4fed7 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goalf-1.1.0-no-OFED.eb @@ -8,7 +8,7 @@ description = """Direct Rendering Manager runtime library.""" toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} -source_urls = ['http://dri.freedesktop.org/libdrm/'] +source_urls = ['http://dri.freedesktop.org/libdrm/'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.so', - 'lib/libdrm_radeon.so', 'lib/libdrm.so', 'lib/libkms.so'], + 'files': ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.%s' % SHLIB_EXT, + 'lib/libdrm_radeon.%s' % SHLIB_EXT, 'lib/libdrm.%s' % SHLIB_EXT, 'lib/libkms.%s' % SHLIB_EXT], 'dirs': ['include/libdrm', 'include/libkms', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goolf-1.4.10.eb index b1d2fbfdf4022b01eef815daaa39b934300b2896..81433d6c74758251a983b46c4ed2e35e874b16c4 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-goolf-1.4.10.eb @@ -8,7 +8,7 @@ description = """Direct Rendering Manager runtime library.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} -source_urls = ['http://dri.freedesktop.org/libdrm/'] +source_urls = ['http://dri.freedesktop.org/libdrm/'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.so', - 'lib/libdrm_radeon.so', 'lib/libdrm.so', 'lib/libkms.so'], + 'files': ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.%s' % SHLIB_EXT, + 'lib/libdrm_radeon.%s' % SHLIB_EXT, 'lib/libdrm.%s' % SHLIB_EXT, 'lib/libkms.%s' % SHLIB_EXT], 'dirs': ['include/libdrm', 'include/libkms', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.0.6.eb index c3030842e986744a09fdbfe8795ee9bfcc3dedc4..928624815ade0945e27043b260963d7526b023de 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.0.6.eb @@ -8,7 +8,7 @@ description = """Direct Rendering Manager runtime library.""" toolchain = {'name': 'ictce', 'version': '4.0.6'} -source_urls = ['http://dri.freedesktop.org/libdrm/'] +source_urls = ['http://dri.freedesktop.org/libdrm/'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.so', - 'lib/libdrm_radeon.so', 'lib/libdrm.so', 'lib/libkms.so'], + 'files': ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.%s' % SHLIB_EXT, + 'lib/libdrm_radeon.%s' % SHLIB_EXT, 'lib/libdrm.%s' % SHLIB_EXT, 'lib/libkms.%s' % SHLIB_EXT], 'dirs': ['include/libdrm', 'include/libkms', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.1.13.eb index 153b29cec154354e3bdc86f0afee51fe0a0db864..726eea719ea6473b7499133782e82fcd7af7e77c 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-4.1.13.eb @@ -8,7 +8,7 @@ description = """Direct Rendering Manager runtime library.""" toolchain = {'name': 'ictce', 'version': '4.1.13'} -source_urls = ['http://dri.freedesktop.org/libdrm/'] +source_urls = ['http://dri.freedesktop.org/libdrm/'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.so', - 'lib/libdrm_radeon.so', 'lib/libdrm.so', 'lib/libkms.so'], + 'files': ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.%s' % SHLIB_EXT, + 'lib/libdrm_radeon.%s' % SHLIB_EXT, 'lib/libdrm.%s' % SHLIB_EXT, 'lib/libkms.%s' % SHLIB_EXT], 'dirs': ['include/libdrm', 'include/libkms', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.3.0.eb index c5883cb6dbd425f4eebbbaca2fca21d40a29b304..b3743448e486ffd617cfc5aec84621a2b9d02d03 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.3.0.eb @@ -8,7 +8,7 @@ description = """Direct Rendering Manager runtime library.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} -source_urls = ['http://dri.freedesktop.org/libdrm/'] +source_urls = ['http://dri.freedesktop.org/libdrm/'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.so', - 'lib/libdrm_radeon.so', 'lib/libdrm.so', 'lib/libkms.so'], + 'files': ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.%s' % SHLIB_EXT, + 'lib/libdrm_radeon.%s' % SHLIB_EXT, 'lib/libdrm.%s' % SHLIB_EXT, 'lib/libkms.%s' % SHLIB_EXT], 'dirs': ['include/libdrm', 'include/libkms', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.5.0.eb index d46e9edefed2775fd9b3cc54a18a7de2fff32b24..1d6950b4e90e90295d79a38873c89588a0263d67 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.27-ictce-5.5.0.eb @@ -8,7 +8,7 @@ description = """Direct Rendering Manager runtime library.""" toolchain = {'name': 'ictce', 'version': '5.5.0'} -source_urls = ['http://dri.freedesktop.org/libdrm/'] +source_urls = ['http://dri.freedesktop.org/libdrm/'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.so', - 'lib/libdrm_radeon.so', 'lib/libdrm.so', 'lib/libkms.so'], + 'files': ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.%s' % SHLIB_EXT, + 'lib/libdrm_radeon.%s' % SHLIB_EXT, 'lib/libdrm.%s' % SHLIB_EXT, 'lib/libkms.%s' % SHLIB_EXT], 'dirs': ['include/libdrm', 'include/libkms', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.59-intel-2015a.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.59-intel-2015a.eb index 3b516fcaacf3904c52e285f395cc002771916ecf..a9bc97da287cfb78e808619aa0339b7c953eed7f 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.59-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.59-intel-2015a.eb @@ -6,7 +6,7 @@ version = '2.4.59' homepage = 'http://dri.freedesktop.org' description = """Direct Rendering Manager runtime library.""" -source_urls = ['http://dri.freedesktop.org/libdrm/'] +source_urls = ['http://dri.freedesktop.org/libdrm/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'intel', 'version': '2015a'} @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.so', - 'lib/libdrm_radeon.so', 'lib/libdrm.so', 'lib/libkms.so'], + 'files': ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.%s' % SHLIB_EXT, + 'lib/libdrm_radeon.%s' % SHLIB_EXT, 'lib/libdrm.%s' % SHLIB_EXT, 'lib/libkms.%s' % SHLIB_EXT], 'dirs': ['include/libdrm', 'include/libkms', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.64-intel-2015b.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.64-intel-2015b.eb index 957d926dae82d928953f8d4b578464dc2aa8ca24..699155c11d4bc4d7fece0c39d8c5b4c63f894553 100644 --- a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.64-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.64-intel-2015b.eb @@ -6,7 +6,7 @@ version = '2.4.64' homepage = 'http://dri.freedesktop.org' description = """Direct Rendering Manager runtime library.""" -source_urls = ['http://dri.freedesktop.org/libdrm/'] +source_urls = ['http://dri.freedesktop.org/libdrm/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'intel', 'version': '2015b'} @@ -17,8 +17,8 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.so', - 'lib/libdrm_radeon.so', 'lib/libdrm.so', 'lib/libkms.so'], + 'files': ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.%s' % SHLIB_EXT, + 'lib/libdrm_radeon.%s' % SHLIB_EXT, 'lib/libdrm.%s' % SHLIB_EXT, 'lib/libkms.%s' % SHLIB_EXT], 'dirs': ['include/libdrm', 'include/libkms', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libdrm/libdrm-2.4.66-intel-2015b.eb b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.66-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..c3b9d88a242030e7c406437cb974274bcfc60f6e --- /dev/null +++ b/easybuild/easyconfigs/l/libdrm/libdrm-2.4.66-intel-2015b.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libdrm' +version = '2.4.66' + +homepage = 'http://dri.freedesktop.org' +description = """Direct Rendering Manager runtime library.""" + +source_urls = ['http://dri.freedesktop.org/libdrm/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'intel', 'version': '2015b'} + +dependencies = [ + ('libpthread-stubs', '0.3'), + ('libpciaccess', '0.13.4'), +] + +sanity_check_paths = { + 'files': ['include/xf86drm.h', 'include/xf86drmMode.h', 'lib/libdrm_intel.so', + 'lib/libdrm_radeon.so', 'lib/libdrm.so', 'lib/libkms.so'], + 'dirs': ['include/libdrm', 'include/libkms', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805-GCC-4.9.2.eb index c4e1b21a2a84822782defa64c40b0aabb6678868..cc9e86a7d03a48197779f067635ad063ca4d8da0 100644 --- a/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/l/libdwarf/libdwarf-20140805-GCC-4.9.2.eb @@ -23,7 +23,7 @@ prebuildopts = ' LD_LIBRARY_PATH="../libdwarf:$LD_LIBRARY_PATH" ' files_to_copy = [ (["dwarfdump2/dwarfdump"], "bin"), - (["libdwarf/libdwarf.a", "libdwarf/libdwarf.so"], "lib"), + (["libdwarf/libdwarf.a", "libdwarf/libdwarf.%s" % SHLIB_EXT], "lib"), (["libdwarf/libdwarf.h", "libdwarf/dwarf.h"], "include"), ] diff --git a/easybuild/easyconfigs/l/libedit/libedit-20150325-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/l/libedit/libedit-20150325-GNU-4.9.3-2.25.eb index fe54474a05f46484d6a53eb80628a3c46bc00c4c..20fc94afcc87965b02435ca352c2cc6a46ac70b4 100644 --- a/easybuild/easyconfigs/l/libedit/libedit-20150325-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/l/libedit/libedit-20150325-GNU-4.9.3-2.25.eb @@ -17,7 +17,7 @@ source_urls = ['http://thrysoee.dk/editline/'] dependencies = [('ncurses', '5.9')] sanity_check_paths = { - 'files': ['include/editline/readline.h', 'lib/libedit.so', 'lib/libedit.a'], + 'files': ['include/editline/readline.h', 'lib/libedit.%s' % SHLIB_EXT, 'lib/libedit.a'], 'dirs': [] } diff --git a/easybuild/easyconfigs/l/libelf/libelf-0.8.13-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libelf/libelf-0.8.13-GCC-4.9.2.eb index f0033e4acfb0604108c2f2ce7f77130e60a3af1e..9babe1877c9ef230910b0577610b4573492a5ad7 100644 --- a/easybuild/easyconfigs/l/libelf/libelf-0.8.13-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/l/libelf/libelf-0.8.13-GCC-4.9.2.eb @@ -12,7 +12,7 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://www.mr511.de/software/'] sanity_check_paths = { - 'files': ['lib/libelf.a', 'lib/libelf.so', 'lib/libelf.so.0', 'include/libelf.h'], + 'files': ['lib/libelf.a', 'lib/libelf.%s' % SHLIB_EXT, 'lib/libelf.so.0', 'include/libelf.h'], 'dirs': ['lib/pkgconfig'] } diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-foss-2015b.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..e22ff76c36b92ba940867aebd1c99ea0dbefc3a9 --- /dev/null +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-foss-2015b.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'libffi' +version = '3.0.13' + +homepage = 'http://sourceware.org/libffi/' +description = """The libffi library provides a portable, high level programming interface to various calling +conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = [ + 'ftp://sourceware.org/pub/libffi/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', +] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.0.13-intel-2015b.eb b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..01fb77588ecbb8c7aea50d25e3dd4c784b8c0b5e --- /dev/null +++ b/easybuild/easyconfigs/l/libffi/libffi-3.0.13-intel-2015b.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libffi' +version = '3.0.13' + +homepage = 'http://sourceware.org/libffi/' +description = """The libffi library provides a portable, high level programming interface to various calling +conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [ + 'ftp://sourceware.org/pub/libffi/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', +] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['libffi-%(version)s_include-xmmintrin.patch'] + +sanity_check_paths = { + 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2016a.eb b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..2096059a85ccdd386fb925f71b5157c2cc18b651 --- /dev/null +++ b/easybuild/easyconfigs/l/libffi/libffi-3.2.1-intel-2016a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'libffi' +version = '3.2.1' + +homepage = 'http://sourceware.org/libffi/' +description = """The libffi library provides a portable, high level programming interface to various calling +conventions. This allows a programmer to call any function specified by a call interface description at run-time.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [ + 'ftp://sourceware.org/pub/libffi/', + 'http://www.mirrorservice.org/sites/sourceware.org/pub/libffi/', +] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': [('lib/libffi.%s' % SHLIB_EXT, 'lib64/libffi.%s' % SHLIB_EXT), ('lib/libffi.a', 'lib64/libffi.a')], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libfontenc/libfontenc-1.1.3-intel-2015a.eb b/easybuild/easyconfigs/l/libfontenc/libfontenc-1.1.3-intel-2015a.eb index b6a5cba0dbc9b17505219d9bd09369ecf2e9297b..f206e4360114c9610a1c8aaec316d32c6a31493d 100644 --- a/easybuild/easyconfigs/l/libfontenc/libfontenc-1.1.3-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libfontenc/libfontenc-1.1.3-intel-2015a.eb @@ -16,7 +16,7 @@ builddependencies = [ ] sanity_check_paths = { - 'files': ['include/X11/fonts/fontenc.h', 'lib/libfontenc.so', 'lib/libfontenc.a'], + 'files': ['include/X11/fonts/fontenc.h', 'lib/libfontenc.%s' % SHLIB_EXT, 'lib/libfontenc.a'], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libfontenc/libfontenc-1.1.3-intel-2015b.eb b/easybuild/easyconfigs/l/libfontenc/libfontenc-1.1.3-intel-2015b.eb index 1804b5383febb3104d35ef196e12de4de59a69cf..c5a467f31b6cb87ac264708f29bd8d25c0792fe0 100644 --- a/easybuild/easyconfigs/l/libfontenc/libfontenc-1.1.3-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libfontenc/libfontenc-1.1.3-intel-2015b.eb @@ -16,7 +16,7 @@ builddependencies = [ ] sanity_check_paths = { - 'files': ['include/X11/fonts/fontenc.h', 'lib/libfontenc.so', 'lib/libfontenc.a'], + 'files': ['include/X11/fonts/fontenc.h', 'lib/libfontenc.%s' % SHLIB_EXT, 'lib/libfontenc.a'], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libfontenc/libfontenc-1.1.3-intel-2016a.eb b/easybuild/easyconfigs/l/libfontenc/libfontenc-1.1.3-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..458d0fa78b28b783fe667bfb6acca1f91fb4d89a --- /dev/null +++ b/easybuild/easyconfigs/l/libfontenc/libfontenc-1.1.3-intel-2016a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'libfontenc' +version = '1.1.3' + +homepage = 'http://www.freedesktop.org/wiki/Software/xlibs/' +description = """X11 font encoding library""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +builddependencies = [ + ('xproto', '7.0.28'), +] + +sanity_check_paths = { + 'files': ['include/X11/fonts/fontenc.h', 'lib/libfontenc.%s' % SHLIB_EXT, 'lib/libfontenc.a'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libgd/libgd-2.1.0-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libgd/libgd-2.1.0-ictce-5.5.0.eb index 610b070a4fc1d50a4c55067f2259a0c9f5963b4c..5b28873de211d1835aed8ce6e3ff0815603094f5 100644 --- a/easybuild/easyconfigs/l/libgd/libgd-2.1.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libgd/libgd-2.1.0-ictce-5.5.0.eb @@ -19,7 +19,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ["lib/libgd.a", "lib/libgd.so"], + 'files': ["lib/libgd.a", "lib/libgd.%s" % SHLIB_EXT], 'dirs': ["bin", "include"], } diff --git a/easybuild/easyconfigs/l/libgd/libgd-2.1.1-intel-2015b.eb b/easybuild/easyconfigs/l/libgd/libgd-2.1.1-intel-2015b.eb index 27e5a0a02e061f4ede1ed3f4a17108684bf70437..3714305afd9fcc3d49c28a76c279e814ade6d5e1 100644 --- a/easybuild/easyconfigs/l/libgd/libgd-2.1.1-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libgd/libgd-2.1.1-intel-2015b.eb @@ -20,7 +20,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ["lib/libgd.a", "lib/libgd.so"], + 'files': ["lib/libgd.a", "lib/libgd.%s" % SHLIB_EXT], 'dirs': ["bin", "include"], } diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb index b7b2e2fbc538bae7c735decb7a5a0385368a8298..6aabc3ac11770d3a0ca4607479324fbe929f6e66 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goalf-1.1.0-no-OFED.eb @@ -25,8 +25,8 @@ sources = [SOURCE_TAR_BZ2] source_urls = ['http://hannonlab.cshl.edu/fastx_toolkit'] sanity_check_paths = { - 'files': ['lib/libgtextutils.so', 'lib/libgtextutils.a'], - 'dirs': ['lib/pkgconfig'] - } + 'files': ['lib/libgtextutils.%s' % SHLIB_EXT, 'lib/libgtextutils.a'], + 'dirs': ['lib/pkgconfig'] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb index 4dccc15fd5e321fc5341752be38750e168dc050f..2f55afa678e0406fc14c3f4398bd411be544820d 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.4.10.eb @@ -24,8 +24,8 @@ sources = [SOURCE_TAR_BZ2] source_urls = ['http://hannonlab.cshl.edu/fastx_toolkit'] sanity_check_paths = { - 'files': ['lib/libgtextutils.so', 'lib/libgtextutils.a'], - 'dirs': ['lib/pkgconfig'] - } + 'files': ['lib/libgtextutils.%s' % SHLIB_EXT, 'lib/libgtextutils.a'], + 'dirs': ['lib/pkgconfig'] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.7.20.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.7.20.eb index b5f853d5af4fcb0651cb8fceb9c37f813438c254..1b5c00b84c6b29173fac7a4ad0a2180323eeabd9 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-goolf-1.7.20.eb @@ -25,7 +25,7 @@ sources = [SOURCE_TAR_BZ2] source_urls = ['http://hannonlab.cshl.edu/fastx_toolkit'] sanity_check_paths = { - 'files': ['lib/libgtextutils.so', 'lib/libgtextutils.a'], + 'files': ['lib/libgtextutils.%s' % SHLIB_EXT, 'lib/libgtextutils.a'], 'dirs': ['lib/pkgconfig'] } diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb index 0ac17949f1e06e594c65a1f7696d9ac5396a0214..ded865424087c822cb3419ebee3dd85fea33535f 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-4.0.6.eb @@ -25,8 +25,8 @@ sources = [SOURCE_TAR_BZ2] source_urls = ['http://hannonlab.cshl.edu/fastx_toolkit'] sanity_check_paths = { - 'files': ['lib/libgtextutils.so', 'lib/libgtextutils.a'], - 'dirs': ['lib/pkgconfig'] - } + 'files': ['lib/libgtextutils.%s' % SHLIB_EXT, 'lib/libgtextutils.a'], + 'dirs': ['lib/pkgconfig'] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb index dc2903782e64c4fbf85fa66c16e6477575e858a3..7ff4a544d309a49e7440b3a1631d0dd78f6a2139 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-ictce-5.3.0.eb @@ -26,8 +26,8 @@ sources = [SOURCE_TAR_BZ2] source_urls = ['http://hannonlab.cshl.edu/fastx_toolkit'] sanity_check_paths = { - 'files': ['lib/libgtextutils.so', 'lib/libgtextutils.a'], - 'dirs': ['lib/pkgconfig'] - } + 'files': ['lib/libgtextutils.%s' % SHLIB_EXT, 'lib/libgtextutils.a'], + 'dirs': ['lib/pkgconfig'] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-intel-2015a.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-intel-2015a.eb index 16d490f92bf2bccaa322f74f12cf17471598c078..a911adbdf645ddb7e3fcbd05f9c5040fb1e5c2be 100644 --- a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.6.1-intel-2015a.eb @@ -25,7 +25,7 @@ sources = [SOURCE_TAR_BZ2] source_urls = ['http://hannonlab.cshl.edu/fastx_toolkit'] sanity_check_paths = { - 'files': ['lib/libgtextutils.so', 'lib/libgtextutils.a'], + 'files': ['lib/libgtextutils.%s' % SHLIB_EXT, 'lib/libgtextutils.a'], 'dirs': ['lib/pkgconfig'] } diff --git a/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2015b.eb b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..733d12d5e4b8358f6d61d678f3796b761baaac3e --- /dev/null +++ b/easybuild/easyconfigs/l/libgtextutils/libgtextutils-0.7-foss-2015b.eb @@ -0,0 +1,32 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +easyblock = 'ConfigureMake' + +name = 'libgtextutils' +version = '0.7' + +homepage = 'http://hannonlab.cshl.edu/fastx_toolkit/' +description = """ligtextutils is a dependency of fastx-toolkit and is provided via the same upstream""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['https://github.com/agordon/libgtextutils/releases/download/%(version)s'] +sources = [SOURCE_TAR_GZ] + +sanity_check_paths = { + 'files': ['lib/libgtextutils.so', 'lib/libgtextutils.a'], + 'dirs': ['lib/pkgconfig'] +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libidn/libidn-1.32-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/l/libidn/libidn-1.32-GNU-4.9.3-2.25.eb index f2f84be803f02327f3abf280b988da35fac3cdb6..7f81586dbbe14b113bd699ba71553c83e196f442 100644 --- a/easybuild/easyconfigs/l/libidn/libidn-1.32-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/l/libidn/libidn-1.32-GNU-4.9.3-2.25.eb @@ -13,7 +13,7 @@ source_urls = [GNU_SOURCE] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['bin/idn', 'lib/libidn.so'], + 'files': ['bin/idn', 'lib/libidn.%s' % SHLIB_EXT], 'dirs': ['include'], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-ictce-4.1.13.eb index 7289b72f8d74df00faade96ff20eddea694f3ad2..2fd1231c7acf7927c50b4ac454d9eab824cad61a 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-ictce-4.1.13.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-intel-2014b.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-intel-2014b.eb index 97496de156c0140d8501071c84e011574304a0da..d23e5354dd1b96fa872dd08f48943206bdaf42a1 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.0-intel-2014b.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-goolf-1.7.20.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-goolf-1.7.20.eb index d2b54d01ffffcd7378cc4f9c50b53ab0222acd4d..4a756d191d0d6353829854e246caf9383e7a0fa4 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-goolf-1.7.20.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-5.5.0.eb index f611dfc78de7304d975b18520f3d5db147a10ffd..53e32391dcc40116017a7618128c401125ca03bc 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-5.5.0.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.2.5.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.2.5.eb index ecec75e2301e62ab83a2271a728134b27f86650b..1f077dd9e46effddab794ae20f7f707f32677887 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.2.5.eb @@ -22,4 +22,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.3.5.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.3.5.eb index f987aae4d5e8dbf3acbd86cb1a0f908554836a0f..bdd416258ad4f694fcbd01baf3d2ca4d707be971 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.3.5.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-ictce-6.3.5.eb @@ -22,4 +22,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014.06.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014.06.eb index c76e470179f8b40856715ca806c15b5e4250563a..9186528df63602891bdfd3ecb1ea009df5dd5ea4 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014.06.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014.06.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014b.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014b.eb index 70fac12c9e17f65a112db217b12ad3e6b6683c2e..8e30c1bc84df2c549542fbf9714f6201193cd149 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2014b.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2015a.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2015a.eb index d6bc643d578d7a83bb3cb8b97749e7681fe92881..ad986ffea8da379c8c81b63260b505c353b7153b 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.3.1-intel-2015a.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-foss-2015a.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-foss-2015a.eb index 57eea7cba0e29b79f3f0990099af6574f2e1bf70..5e83491d3f0aa4c6c79a473d2980a31e44522a48 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-foss-2015a.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-foss-2015a.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.5.14.eb index 6af6464ee63d3801bef90d025cf0fa5653741d79..85a9c802fa2d1aa1e193bcaf7ff6f082de838f86 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.5.14.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.7.20.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.7.20.eb index 4197b7c6358b2d6621a0b6789dee75b0a9fe7fd9..e148186d4c5444c88c5ea5e6f32b7bf8275b62ea 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-goolf-1.7.20.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-ictce-7.3.5.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-ictce-7.3.5.eb index 24b1cf1a07384678a528f0a37f68701277867390..f76124a8a3c4a1e9e3839f693d9474474931390f 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-ictce-7.3.5.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-ictce-7.3.5.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015a.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015a.eb index 765e1c4ea1d6d8bd7f5b713ee50a9f1ff206de81..e15ae065d4497161a8e3d51bd17ad7dc240d596f 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015a.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015b.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015b.eb index 2bb0e8f9bccece1ea83e7d126a4c4333511223da..eab64da24e2dbff8d15ddd5fe2b448063237e1fa 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.0-intel-2015b.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.1-foss-2015b.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.1-foss-2015b.eb index eb2697c94d08b4710f1cffa66b8fce30553cdaa9..eb2ff2229c0c40014ed92185a9c26f6af5c05f9e 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.1-foss-2015b.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.1-foss-2015b.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.1-goolf-1.7.20.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.1-goolf-1.7.20.eb index af63e0180b6b98482efd3f63120aa269b0e705cb..fb752c1fdd663bb56a755663923ec1969468eca7 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.1-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.1-goolf-1.7.20.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.1-intel-2015a.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.1-intel-2015a.eb index 3f922516d94cf412d1116db53cd2f7f811bdac65..76f9c8ecfe962888f330058de7a0e883789c1c63 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.1-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.1-intel-2015a.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.1-intel-2015b.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.1-intel-2015b.eb index 49b99b98b32ddc0fbac101c331e38e452186e871..312b7f35a9c9349792b33c557a791f7c69cb4231 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.1-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.1-intel-2015b.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.2-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..c9cc4d2e6fc67d244b3acef1099d72eef0698c10 --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.2-goolf-1.4.10.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.4.2' + +homepage = 'http://sourceforge.net/libjpeg-turbo/' +description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG +compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('NASM', '2.11.08'), +] + +configopts = "--with-jpeg8" +runtest = "test" + +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share/man'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.2-intel-2015b.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.2-intel-2015b.eb index 11356694c2a864036d8023db60b344af5c1495c0..a9bd6e350023fc349170dd5b4a22d8d2059d74d0 100644 --- a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.2-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.2-intel-2015b.eb @@ -21,4 +21,10 @@ dependencies = [ configopts = "--with-jpeg8" runtest = "test" +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.2-intel-2016a.eb b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.2-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..c23fea50a0e1b67b6c1591b71a1c81b85bbe3913 --- /dev/null +++ b/easybuild/easyconfigs/l/libjpeg-turbo/libjpeg-turbo-1.4.2-intel-2016a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'libjpeg-turbo' +version = '1.4.2' + +homepage = 'http://sourceforge.net/projects/libjpeg-turbo/' +description = """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG +compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding. +""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('NASM', '2.11.08'), +] + +configopts = "--with-jpeg8" +runtest = "test" + +sanity_check_paths = { + 'files': ['bin/cjpeg', 'bin/djpeg', 'bin/jpegtran', 'bin/rdjpgcom', 'bin/tjbench', 'bin/wrjpgcom', + 'lib/libjpeg.a', 'lib/libjpeg.%s' % SHLIB_EXT, 'lib/libturbojpeg.a', 'lib/libturbojpeg.%s' % SHLIB_EXT], + 'dirs': ['include', 'share'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.11-foss-2015b.eb b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.11-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..2fd935d0b5e5b5100d7893e711c282d54c805e23 --- /dev/null +++ b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.11-foss-2015b.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'libmatheval' +version = '1.1.11' + +homepage = 'http://www.gnu.org/software/libmatheval/' +description = """GNU libmatheval is a library (callable from C and Fortran) to parse + and evaluate symbolic expressions input as text.""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.4'), + ('byacc', '20150711'), + ('guile', '1.8.8'), +] + +configopts = '--with-pic ' + +# fix for guile-config being broken because shebang line contains full path to bin/guile +configopts += 'GUILE_CONFIG="$EBROOTGUILE/bin/guile -e main -s $EBROOTGUILE/bin/guile-config"' + +sanity_check_paths = { + 'files': ['lib/libmatheval.a', 'include/matheval.h'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.11-intel-2015b.eb b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.11-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..5c07ab422c00b5f43f6641ccebbd687d59137667 --- /dev/null +++ b/easybuild/easyconfigs/l/libmatheval/libmatheval-1.1.11-intel-2015b.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'libmatheval' +version = '1.1.11' + +homepage = 'http://www.gnu.org/software/libmatheval/' +description = """GNU libmatheval is a library (callable from C and Fortran) to parse + and evaluate symbolic expressions input as text.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.4'), + ('byacc', '20150711'), + ('guile', '1.8.8'), +] + +configopts = '--with-pic ' + +# fix for guile-config being broken because shebang line contains full path to bin/guile +configopts += 'GUILE_CONFIG="$EBROOTGUILE/bin/guile -e main -s $EBROOTGUILE/bin/guile-config"' + +sanity_check_paths = { + 'files': ['lib/libmatheval.a', 'include/matheval.h'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.3-intel-2015a.eb b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.3-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..e28f16cff6c3aedfb3731be4ae131774dafbe438 --- /dev/null +++ b/easybuild/easyconfigs/l/libpciaccess/libpciaccess-0.13.3-intel-2015a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'libpciaccess' +version = '0.13.3' + +homepage = 'http://cgit.freedesktop.org/xorg/lib/libpciaccess/' +description = """Generic PCI access library.""" + +source_urls = ['http://cgit.freedesktop.org/xorg/lib/libpciaccess/snapshot'] +sources = [SOURCE_TAR_GZ] + +toolchain = {'name': 'intel', 'version': '2015a'} + +builddependencies = [ + ('Autoconf', '2.69'), + ('xorg-macros', '1.19.0'), +] + +preconfigopts = "ACLOCAL='aclocal -I $EBROOTXORGMINMACROS/share/aclocal' ./autogen.sh && " + +sanity_check_paths = { + 'files': ['include/pciaccess.h', 'lib/libpciaccess.a'], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goalf-1.1.0-no-OFED.eb index d8f3d31c2c98819cc680df7103c198d23e1f4171..9f8c965936b25419967bec34e05b8d9191683ee3 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goalf-1.1.0-no-OFED.eb @@ -17,9 +17,9 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.so', - 'lib/pkgconfig/libpng.pc'], - 'dirs': ['include'] - } + 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.%s' % SHLIB_EXT, + 'lib/pkgconfig/libpng.pc'], + 'dirs': ['include'] +} moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goolf-1.4.10.eb index 848af67ab2b8d9dcaa9a3a54d6683d268fda0a00..026279ea98cb4f2ef2244f5a4b9961c6b6b18002 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-goolf-1.4.10.eb @@ -16,9 +16,9 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.so', - 'lib/pkgconfig/libpng.pc'], - 'dirs': ['include'] - } + 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.%s' % SHLIB_EXT, + 'lib/pkgconfig/libpng.pc'], + 'dirs': ['include'] +} moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.10.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.10.eb index 79eddf253709fb24b4f79e6222f1c066c2aa5442..3869d59df91ef2c0d2b3f370e780cd75a3e4d22f 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.10.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.10.eb @@ -17,9 +17,9 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.so', - 'lib/pkgconfig/libpng.pc'], - 'dirs': ['include'] - } + 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.%s' % SHLIB_EXT, + 'lib/pkgconfig/libpng.pc'], + 'dirs': ['include'] +} moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.6.eb index fbcb722f706725d4250b72cf5134ecf45d816544..4375a4e72529a2c07a9133b4db3c05e6cac02842 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.0.6.eb @@ -17,9 +17,9 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.so', - 'lib/pkgconfig/libpng.pc'], - 'dirs': ['include'] - } + 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.%s' % SHLIB_EXT, + 'lib/pkgconfig/libpng.pc'], + 'dirs': ['include'] +} moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.1.13.eb index cf81907b250b69ddb944532abdaaa5d5bb6b7b0c..0d7b0e835c18832a842cf50ca77d9060538d6095 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-4.1.13.eb @@ -17,9 +17,9 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.so', - 'lib/pkgconfig/libpng.pc'], - 'dirs': ['include'] - } + 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.%s' % SHLIB_EXT, + 'lib/pkgconfig/libpng.pc'], + 'dirs': ['include'] +} moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-5.3.0.eb index 615cbae8c64f36fd231d60b7e2390d2b8a3c3004..b67cbf0ac01d47ebc079225a09bd5e00c3d18a0e 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.13-ictce-5.3.0.eb @@ -17,9 +17,9 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.so', - 'lib/pkgconfig/libpng.pc'], - 'dirs': ['include'] - } + 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.%s' % SHLIB_EXT, + 'lib/pkgconfig/libpng.pc'], + 'dirs': ['include'] +} moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goalf-1.1.0-no-OFED.eb index 3b118ba80640b1fb53f3dec25aed3df4b429a66b..75db89f06cf8f0baa6788d7770f73c269917d960 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goalf-1.1.0-no-OFED.eb @@ -17,7 +17,7 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.so', 'lib/pkgconfig/libpng.pc'], + 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.%s' % SHLIB_EXT, 'lib/pkgconfig/libpng.pc'], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goolf-1.4.10.eb index 9e16b44ccb5594b11d9e0dd6410b1461e3f233e6..9c74dd0a4a5dfeed63dbc88271bd14f1c34da613 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-goolf-1.4.10.eb @@ -17,7 +17,7 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.so', 'lib/pkgconfig/libpng.pc'], + 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.%s' % SHLIB_EXT, 'lib/pkgconfig/libpng.pc'], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-3.2.2.u3.eb index c67d2249d57513b5c5c1540e2d951a6b73847619..0e161c68b9639a28b3df2f1443732b99af948bd7 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-3.2.2.u3.eb @@ -17,7 +17,7 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.so', 'lib/pkgconfig/libpng.pc'], + 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.%s' % SHLIB_EXT, 'lib/pkgconfig/libpng.pc'], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-4.1.13.eb index dfc6f1d8048cf2347d5388364647c496ed60c2c6..3e3a08adaacbcb381d6520374566e43f8053132d 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-4.1.13.eb @@ -17,7 +17,7 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.so', 'lib/pkgconfig/libpng.pc'], + 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.%s' % SHLIB_EXT, 'lib/pkgconfig/libpng.pc'], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-5.3.0.eb index 93ce285e5484d89ca93d10073b112f83c3bfc9e2..6aeef2a9a29abc41b1c83711bd97eb957bbd5d94 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-ictce-5.3.0.eb @@ -17,7 +17,7 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.so', 'lib/pkgconfig/libpng.pc'], + 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.%s' % SHLIB_EXT, 'lib/pkgconfig/libpng.pc'], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-iqacml-3.7.3.eb b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-iqacml-3.7.3.eb index a7a887af098e64dd4c44c3fc3f37d8646b3ca6a2..83d95fbd12cd19a36daa2c8141a6e095459c2b72 100644 --- a/easybuild/easyconfigs/l/libpng/libpng-1.5.14-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/l/libpng/libpng-1.5.14-iqacml-3.7.3.eb @@ -17,7 +17,7 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.so', 'lib/pkgconfig/libpng.pc'], + 'files': ['bin/libpng-config', 'lib/libpng.a', 'lib/libpng.%s' % SHLIB_EXT, 'lib/pkgconfig/libpng.pc'], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.20-foss-2015a.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.20-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..94bb4e0c8fe2b61a46e3184e22cf904966931b9f --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.20-foss-2015a.eb @@ -0,0 +1,19 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.20' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.21-foss-2015b.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.21-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..03fb87f59f38f8ab3afe0137b7e6c904b246effd --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.21-foss-2015b.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.21' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +majminver = ''.join(version.split('.')[:2]) +sanity_check_paths = { + 'files': ['include/pngconf.h', 'include/png.h', 'include/pnglibconf.h', 'lib/libpng.a', + 'lib/libpng.%s' % SHLIB_EXT, 'lib/libpng%s.a' % majminver, 'lib/libpng%s.%s' % (majminver, SHLIB_EXT)], + 'dirs': ['bin', 'include/libpng%s' % majminver, 'share/man'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.21-intel-2015b.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.21-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..b76c98f402c7edf7b69faf1a9aa3066c2151dfba --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.21-intel-2015b.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.21' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +majminver = ''.join(version.split('.')[:2]) +sanity_check_paths = { + 'files': ['include/pngconf.h', 'include/png.h', 'include/pnglibconf.h', 'lib/libpng.a', + 'lib/libpng.%s' % SHLIB_EXT, 'lib/libpng%s.a' % majminver, 'lib/libpng%s.%s' %(majminver, SHLIB_EXT)], + 'dirs': ['bin', 'include/libpng%s' % majminver, 'share/man'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpng/libpng-1.6.21-intel-2016a.eb b/easybuild/easyconfigs/l/libpng/libpng-1.6.21-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..db360bc83f648592127172590029b4a9c92e01fd --- /dev/null +++ b/easybuild/easyconfigs/l/libpng/libpng-1.6.21-intel-2016a.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'libpng' +version = '1.6.21' + +homepage = 'http://www.libpng.org/pub/png/libpng.html' +description = "libpng is the official PNG reference library" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('zlib', '1.2.8')] + +configopts = "--with-pic" + +majminver = ''.join(version.split('.')[:2]) +sanity_check_paths = { + 'files': ['include/pngconf.h', 'include/png.h', 'include/pnglibconf.h', 'lib/libpng.a', + 'lib/libpng.%s' % SHLIB_EXT, 'lib/libpng%s.a' % majminver, 'lib/libpng%s.%s' % (majminver, SHLIB_EXT)], + 'dirs': ['bin', 'include/libpng%s' % majminver, 'share/man'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb index 9e928c536ded433eff3f4f66653ad708399fde6d..a10468dde6a6c0cd2307787b8dbb409a1d7dce43 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-foss-2014b.eb @@ -7,14 +7,14 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'foss', 'version': '2014b'} sanity_check_paths = { - 'files' : ['lib/pkgconfig/pthread-stubs.pc'], - 'dirs': [] , + 'files': ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goalf-1.1.0-no-OFED.eb index f829f915ab6597136901000c734dc83d981a6a43..511ed358b04b4fd63f36fa164aa2c6e9fb5787e9 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goalf-1.1.0-no-OFED.eb @@ -7,14 +7,14 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sanity_check_paths = { - 'files' : ['lib/pkgconfig/pthread-stubs.pc'], - 'dirs': [] - } + 'files': ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [] +} moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goolf-1.4.10.eb index 1b25208919d5b1d5a6427f76cd979908683ad8e6..211abf16ff97787cac29f6a27529049720435f6a 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-goolf-1.4.10.eb @@ -7,13 +7,13 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'goolf', 'version': '1.4.10'} sanity_check_paths = { - 'files' : ['lib/pkgconfig/pthread-stubs.pc'], - 'dirs': [] - } + 'files': ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [] +} moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.0.6.eb index 9f980a8c825637ab625cecdac48d3ae7fee1c24e..1ab3a5ccf45b964edcd45d9663e688e29965f865 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.0.6.eb @@ -7,14 +7,14 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'ictce', 'version': '4.0.6'} sanity_check_paths = { - 'files' : ['lib/pkgconfig/pthread-stubs.pc'], - 'dirs': [] - } + 'files': ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [] +} moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.1.13.eb index f73ab22a6e0cb10e444f4e441f4b24f911227d63..8d7fb1e79f2c73f4fd8bc2e615e8d81488a8937f 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-4.1.13.eb @@ -7,14 +7,14 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'ictce', 'version': '4.1.13'} sanity_check_paths = { - 'files' : ['lib/pkgconfig/pthread-stubs.pc'], - 'dirs': [] , + 'files': ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.3.0.eb index 1c780648c6cb3a3d8ed1ef54650a2b11fb87fa5a..ea261c17d214ff71069e1e6fa84ecb8aa27f1f21 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.3.0.eb @@ -7,15 +7,15 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'ictce', 'version': '5.3.0'} sanity_check_paths = { - 'files' : ['lib/pkgconfig/pthread-stubs.pc'], - 'dirs': [] - } + 'files': ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [] +} moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.5.0.eb index 718b266c0abb9341e2150eb827c82e976c757da1..ef620135593732f4b0a007fe6765425dfb9130f4 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-ictce-5.5.0.eb @@ -7,14 +7,14 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'ictce', 'version': '5.5.0'} sanity_check_paths = { - 'files' : ['lib/pkgconfig/pthread-stubs.pc'], - 'dirs': [] , + 'files': ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb index 46dee523f9afb65b6caf1a994885c3cb04202f40..6b19a1bcd1da0224ec05a357c514462174d72ce8 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2014b.eb @@ -7,14 +7,14 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'intel', 'version': '2014b'} sanity_check_paths = { - 'files' : ['lib/pkgconfig/pthread-stubs.pc'], - 'dirs': [] , + 'files': ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2015a.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2015a.eb index 36651021047a5a4d6bce58f1a6dd71ca348dd741..fca6a0816804debe642f9c6a45bd2fb94931ed7e 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2015a.eb @@ -7,14 +7,14 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'intel', 'version': '2015a'} sanity_check_paths = { - 'files' : ['lib/pkgconfig/pthread-stubs.pc'], - 'dirs': [] , + 'files': ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2015b.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2015b.eb index aec5e572ed621a14dd644e4a636d761790e40515..b147185e9d1957110eef6d4b174825b4e4df5af7 100644 --- a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2015b.eb @@ -7,14 +7,14 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'intel', 'version': '2015b'} sanity_check_paths = { - 'files' : ['lib/pkgconfig/pthread-stubs.pc'], - 'dirs': [] , + 'files': ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2016a.eb b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..afc122569086b97a439c77b83eab22e8af82a98f --- /dev/null +++ b/easybuild/easyconfigs/l/libpthread-stubs/libpthread-stubs-0.3-intel-2016a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'libpthread-stubs' +version = '0.3' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'intel', 'version': '2016a'} + +sanity_check_paths = { + 'files': ['lib/pkgconfig/pthread-stubs.pc'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmpolf-1.1.6.eb index f9b6b2a61b0745d7c93e5e557a180aaa176d313a..17ca0fce10780c03c992cf8f78ff36459e4eab0e 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmpolf-1.1.6.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9-20130406')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.1.12rc1.eb index 3eb170a630489045f58a27ee3d9de5a763d4d574..8d2ea29b4ccb46917e2fb6b1aba8bb3791c309ae 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.1.12rc1.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9-20130406')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.2.7.eb index b1fad1251e52a9a7bbdea99c5f7c70b85967f7f7..aea7099ee49367d5d3ac4f4284a74fd2900710a0 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgmvolf-1.2.7.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9-20130406')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgoolf-1.1.7.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgoolf-1.1.7.eb index f943ccf7e0aed1bae0d11fb9ffba6495b6756389..7216c9ca1c0b1062947134f1b0e5a45aae88e03a 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-cgoolf-1.1.7.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9-20130406')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmpolf-1.4.8.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmpolf-1.4.8.eb index d504b4bb9d260334e0fe8de22b9d9a3eb6dcc5fe..a36ac06d7496201adeb72f7268a69c7caa5aaa53 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmpolf-1.4.8.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12.eb index 1c4ed7503785da31282cd0653ba3abe8f19155c0..44256963645070ebc9397f8f754f7a7c06e64003 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9-20130406')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12rc1.eb index 763615c3b80ae9dd9ee928e2f3e2d4c82baeed9d..8892dfc907e2ffe7fec8ea376d8bc81dd23d936a 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gmvolf-1.7.12rc1.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9-20130406')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.1.0-no-OFED.eb index 0a9aa5e42cc91a184c337e00fe756976087c9c1b..7778abffff5dda0354515b41f0432ed3a473929e 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.1.0-no-OFED.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.5.12-no-OFED.eb index 7f0acba39d6333a128ebdebf2a0517cc20f4d85b..157a15b6bbc87d4d5911bffeccfcdcbcca0a8598 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goalf-1.5.12-no-OFED.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.4.12-no-OFED.eb index 9d6b94d269cf4db1ac94a5f26e73a185a83f9fec..6a9bcf9cdd20df999f2d5d4e5eb7d9757f482b44 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-gompi-1.4.12-no-OFED.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.4.10.eb index a2a91a97835ab079e3ca22bafa4bd32fd685c4e2..c5324cbad17bf175b5edf389d2d1137c3b7cd8d2 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.4.10.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.5.14.eb index 82d3bb3ea36b95a45307a78d3acca11c6eae7f19..b07b7634b9378a6e3cc51067addf0af43f2682f2 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-goolf-1.5.14.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.10.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.10.eb index 0ea31c36445a67f24573f91cc69d57464380e8e5..853816b19b74252c39cd4f68750b6a32c459a7d2 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.10.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.10.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.6.eb index d91a3d0cbdeac3d116cd3872055d25a28c78f598..26cadb84b9a2e811c060b66e5287914f7b23480c 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.0.6.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.1.13.eb index 85c94bcdf611c927d5a818fdb9db6afd8fdaeeee..055d457da0daf5dcb7f56dcfe9ea760607859dbd 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-4.1.13.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.2.0.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.2.0.eb index 7b606618cdb8f0e3bc8c45337f3c35072df76e6a..6f9a153abf6d4091831d18e02db1b0a2cc1ed77b 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.2.0.eb @@ -9,7 +9,7 @@ allow users to edit command lines as they are typed in. Both Emacs and vi editin The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" -toolchain = {'name': 'ictce', 'version' : '5.2.0'} +toolchain = {'name': 'ictce', 'version': '5.2.0'} toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.3.0.eb index 569becdb9b6b11ca9eba206f9b0d64f11ce20f76..a4bce470a581a429d2db91ccbd4dfb427d16ecc2 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.3.0.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.4.0.eb similarity index 94% rename from easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.1.29.eb rename to easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.4.0.eb index 106937558998f9776c6ed41a58c352d020bffcea..8003f03676c67211eddf93fa2cfb6f4fa325002c 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.4.0.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'libreadline' -version = '6.3' +version = '6.2' homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' description = """The GNU Readline library provides a set of functions for use by applications that @@ -9,7 +9,7 @@ description = """The GNU Readline library provides a set of functions for use by The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchain = {'name': 'ictce', 'version': '5.4.0'} toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.5.0.eb index c0482afd8005dd6c7d3a576e83927837b295679b..15a227218e589f36cad4c80cfe1033487c5775a9 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-ictce-5.5.0.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-intel-2015a.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-intel-2015a.eb index d963e36805f569579a0e694759075834e597ec67..9236fd84d0e29a2f4e2c0d827be11f8afe2eed1e 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-intel-2015a.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iomkl-4.6.13.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iomkl-4.6.13.eb index 9554501c1932495ae653233b4733e363a2865ad2..7435fb5029668831e02b53a1b22fe8729a85e617 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iomkl-4.6.13.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iomkl-4.6.13.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-3.7.3.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-3.7.3.eb index e5a19f2764c06a4b8d6d9849a89f424c823d44a4..a669b4f5be98d4f4d08ca6e5f4b73cc1d3cf987e 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-3.7.3.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-4.4.13.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-4.4.13.eb index 6c11c363a65dfceebb428bc9e2722c9e7c544f7e..a120dd43072133e15932f1ecc39c22507677fd92 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-4.4.13.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.2-iqacml-4.4.13.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-2015.06-XC.eb similarity index 95% rename from easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.25.eb rename to easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-2015.06-XC.eb index 33f071a9b30fdeca19ada53dc58f4b985b74b14f..86d953546093074483e92d1bdae54f37a3b5ece0 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-2015.06-XC.eb @@ -9,7 +9,7 @@ description = """The GNU Readline library provides a set of functions for use by The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-2015.11-XC.eb similarity index 95% rename from easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.40.eb rename to easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-2015.11-XC.eb index 18966e66069c3e8392ad4fbc10b7a580b3e1ba61..9f6f591568a4b93d96818b3004837bcc5e0c9ab4 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-5.2.40.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-CrayGNU-2015.11-XC.eb @@ -9,7 +9,7 @@ description = """The GNU Readline library provides a set of functions for use by The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} toolchainopts = {'pic': True} sources = ['readline-%(version)s.tar.gz'] diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.8.2.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.8.2.eb index c91b6b94701ad1d2c0bb8e49b2052552597182d7..252a86c5272777c1e73cb40a1b2157a44f522ec0 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.8.2.eb @@ -20,10 +20,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.9.2.eb index 10721a76588cc69e39798185f01804b989179cd3..afd0f9f313dd4937045b4ab3c5509f01bca1ba7b 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCC-4.9.2.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCCcore-4.9.3.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCCcore-4.9.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..46e89b5a9631cb5358043e3ac5817d97f33b546b --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GCCcore-4.9.3.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'GCCcore', 'version': '4.9.3'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +builddependencies = [('binutils', '2.25')] +dependencies = [('ncurses', '6.0')] + +# for the termcap symbols, use EB ncurses +preconfigopts = "LDFLAGS='-lncurses'" + +sanity_check_paths = { + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GNU-4.9.3-2.25.eb index c63d31b97cf1d56ec92510109fbae33363346e53..05d84769350f732f669f87267245163622ce84c2 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-GNU-4.9.3-2.25.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2014b.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2014b.eb index 8b18b445d2207cd51d55099d61b480c07204900c..362df4f9bdb1c527421254122e94a0d4d0d33f98 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2014b.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2014b.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb index 8985f04b52d215ec9539e3a86d5519a8f3f9dfbc..763ccd948895bc5c2f4a8bf79edce3ed7bcbc06a 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015.05.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015a.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015a.eb index 505614848ebbd4d4fb93c0961bbfbd48d69816a4..d3b76459b6d44c14213c55fcfe4732b0a9f6881d 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015a.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015a.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015b.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015b.eb index 12cfef1cc3cdd1fe0dd739d5b178fcf316cbff91..66ecad79ff5cb8aab4c9881ac3b3b40065bbe447 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015b.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2015b.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2016a.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..037141ab778ea9d9405bc2774f34d54c103c75f3 --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-foss-2016a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'foss', 'version': '2016a'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '6.0')] + +# for the termcap symbols, use EB ncurses +preconfigopts = "LDFLAGS='-lncurses'" + +sanity_check_paths = { + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-gimkl-2.11.5.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-gimkl-2.11.5.eb index 7eea47c4c649d50f87aa98f84e11692ac9750a42..fb2145ca857437d4442fcb075c14d247c0a96c58 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-gimkl-2.11.5.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-gompi-1.5.16.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-gompi-1.5.16.eb index 77b77c5ab34618778edd1046ab9af7f9b2b4d19c..8845b7c009d1113640f85777f69d7906534f8b77 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-gompi-1.5.16.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-gompi-1.5.16.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.4.10.eb index a703a43f652db2496efb6a8cbc1806caaba10f84..793dcaf0af9d518ec1a17da92d992c39914f9853 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.4.10.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.5.14.eb index 3b29814b1f6e51f83f16455e821ecf75258f3d90..e594babc962286447e5cf8a60625ed8d96ad63e6 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.5.14.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.7.20.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.7.20.eb index 1b6851f0cd04fc79be43f6ace7c24d3c44d47733..ec5413615c6946b0b1f010599aaa86f039b41fbb 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-goolf-1.7.20.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.2.5.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.2.5.eb index bf05a3f8b5abb317ea3ce0a6ef77a1c3308c6f8e..35af50be83bdce6ffaf60f2c5bea696c9622cd54 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.2.5.eb @@ -24,9 +24,8 @@ preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in - ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', - 'rlconf.h', 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.3.5.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.3.5.eb index ae449f5493d59c25183756afdaaad7d5faf671e8..2db2e8532677fee8a12e72fd49e4541825180391 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.3.5.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-6.3.5.eb @@ -24,9 +24,8 @@ preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in - ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', - 'rlconf.h', 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-7.1.2.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-7.1.2.eb index c0c7a99d1b49b8bf75692365adc6c822a1b82f9e..c9c675d48425bc1729e581c730a89ce19f78a154 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-7.1.2.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-7.3.5.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-7.3.5.eb index aba2f0784123527d3ecebc5c384472984f856599..46eef59b197a2643bcfa3c8e4b06bb4703163b2e 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-7.3.5.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-ictce-7.3.5.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014.06.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014.06.eb index 0c39d000e3b459dd63a12dcbcad921728aa57a11..583b41298f853b2d02f64efe757f7033b71c9f1a 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014.06.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014.06.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014b.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014b.eb index 009d1d8c22de13daf1d226fdeedc371a4d801d58..3e67c2044917732df64cd7683b7c69cb103687ce 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2014b.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2015a.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2015a.eb index dcae291ca2ebbf5ef981020c015e0eabd4842e1a..2c8752c40012c517201fbbcb8e10906ff544e252 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2015a.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2015b.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2015b.eb index 631e51d64801b756997ff821d432e0f80c3cfe68..de76493eec8f84523ea05be91cf16de0d76741fe 100644 --- a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2015b.eb @@ -21,10 +21,10 @@ dependencies = [('ncurses', '5.9')] preconfigopts = "LDFLAGS='-lncurses'" sanity_check_paths = { - 'files' : ['lib/libreadline.a', 'lib/libhistory.a'] + - ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', - 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], - 'dirs' : [], + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2016a.eb b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..0762f90f29f7d4705159aa0ac8590730bf7013da --- /dev/null +++ b/easybuild/easyconfigs/l/libreadline/libreadline-6.3-intel-2016a.eb @@ -0,0 +1,30 @@ +easyblock = 'ConfigureMake' + +name = 'libreadline' +version = '6.3' + +homepage = 'http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html' +description = """The GNU Readline library provides a set of functions for use by applications that + allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. + The Readline library includes additional functions to maintain a list of previously-entered command lines, + to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'pic': True} + +sources = ['readline-%(version)s.tar.gz'] +source_urls = ['http://ftp.gnu.org/gnu/readline'] + +dependencies = [('ncurses', '6.0')] + +# for the termcap symbols, use EB ncurses +preconfigopts = "LDFLAGS='-lncurses'" + +sanity_check_paths = { + 'files': ['lib/libreadline.a', 'lib/libhistory.a'] + + ['include/readline/%s' % x for x in ['chardefs.h', 'history.h', 'keymaps.h', 'readline.h', 'rlconf.h', + 'rlstdc.h', 'rltypedefs.h', 'tilde.h']], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libsigc++/libsigc++-2.4.1-intel-2015a.eb b/easybuild/easyconfigs/l/libsigc++/libsigc++-2.4.1-intel-2015a.eb index f4b4e3a392d224afe9554a8242b924484fe297ce..e04102662d77df9ec738c821fffa5cb536be3fc8 100644 --- a/easybuild/easyconfigs/l/libsigc++/libsigc++-2.4.1-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libsigc++/libsigc++-2.4.1-intel-2015a.eb @@ -13,8 +13,8 @@ source_urls = ['http://ftp.gnome.org/pub/gnome/sources/%(name)s/%(version_major_ sources = ['%(namelower)s-%(version)s.tar.xz'] sanity_check_paths = { - 'files': ['lib/libsigc-2.0.so'], - 'dirs': [], + 'files': ['lib/libsigc-2.0.%s' % SHLIB_EXT], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/libsigc++/libsigc++-2.4.1-intel-2015b.eb b/easybuild/easyconfigs/l/libsigc++/libsigc++-2.4.1-intel-2015b.eb index 5511462c101c04cb4060bcbd4604261885282002..0a9130740bc419ebb3de9f6902977a67c2c677f5 100644 --- a/easybuild/easyconfigs/l/libsigc++/libsigc++-2.4.1-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libsigc++/libsigc++-2.4.1-intel-2015b.eb @@ -13,7 +13,7 @@ source_urls = ['http://ftp.gnome.org/pub/gnome/sources/%(name)s/%(version_major_ sources = ['%(namelower)s-%(version)s.tar.xz'] sanity_check_paths = { - 'files': ['lib/libsigc-2.0.so'], + 'files': ['lib/libsigc-2.0.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/l/libsodium/libsodium-1.0.3-intel-2015a.eb b/easybuild/easyconfigs/l/libsodium/libsodium-1.0.3-intel-2015a.eb index 761355fc9f515a8aabebf8582db27bb77d24f5a1..7c1505061ba59e50f8594777d3f8eb116a90b715 100644 --- a/easybuild/easyconfigs/l/libsodium/libsodium-1.0.3-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libsodium/libsodium-1.0.3-intel-2015a.eb @@ -13,7 +13,7 @@ source_urls = ['https://download.libsodium.org/libsodium/releases/'] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['include/sodium.h', 'lib/libsodium.so', 'lib/libsodium.a'], + 'files': ['include/sodium.h', 'lib/libsodium.%s' % SHLIB_EXT, 'lib/libsodium.a'], 'dirs': ['include/sodium', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libsodium/libsodium-1.0.6-intel-2015b.eb b/easybuild/easyconfigs/l/libsodium/libsodium-1.0.6-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..67aa99e29a41c2512f1792a193ef84b4f21c7399 --- /dev/null +++ b/easybuild/easyconfigs/l/libsodium/libsodium-1.0.6-intel-2015b.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'libsodium' +version = '1.0.6' + +homepage = 'http://doc.libsodium.org/' +description = """Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, + password hashing and more.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['https://download.libsodium.org/libsodium/releases/'] +sources = [SOURCE_TAR_GZ] + +sanity_check_paths = { + 'files': ['include/sodium.h', 'lib/libsodium.so', 'lib/libsodium.a'], + 'dirs': ['include/sodium', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libsodium/libsodium-1.0.8-foss-2015a.eb b/easybuild/easyconfigs/l/libsodium/libsodium-1.0.8-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..9293b733b8aed9fdd76f23951d9a4aa933787913 --- /dev/null +++ b/easybuild/easyconfigs/l/libsodium/libsodium-1.0.8-foss-2015a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'libsodium' +version = '1.0.8' + +homepage = 'http://doc.libsodium.org/' +description = """Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, + password hashing and more.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['https://download.libsodium.org/libsodium/releases/'] +sources = [SOURCE_TAR_GZ] + +sanity_check_paths = { + 'files': ['include/sodium.h', 'lib/libsodium.%s' % SHLIB_EXT, 'lib/libsodium.a'], + 'dirs': ['include/sodium', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb index fdeaf140c10ba4cd30da4cce5f01094e9477178c..a0d2e1edbd2f555fd2f1db59593de5620e12c409 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-GCC-4.9.2.eb @@ -7,7 +7,7 @@ homepage = 'http://www.gnu.org/software/libtool' description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.""" -toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchain = {'name': 'GCC', 'version': '4.9.2'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.0.6.eb index cf4ec0fba352781a64222232ece0e3d9e1cc2920..2d8ce10f061fb442d47dbcccece327238b84cb49 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.0.6.eb @@ -7,7 +7,7 @@ homepage = 'http://www.gnu.org/software/libtool' description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.""" -toolchain = {'name': 'ictce', 'version' : '4.0.6'} +toolchain = {'name': 'ictce', 'version': '4.0.6'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.1.13.eb index a9c05667103236c49cc90797bbc69b85cf48c606..3c57c305b2ea87739347f951b922f21e7e49ec06 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.2-ictce-4.1.13.eb @@ -7,7 +7,7 @@ homepage = 'http://www.gnu.org/software/libtool' description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.""" -toolchain = {'name': 'ictce', 'version' : '4.1.13'} +toolchain = {'name': 'ictce', 'version': '4.1.13'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb index a0c6a258a8085acd0019ae315d17dde3d1611a56..51c79ac40abd2506909c7db616abae7c2c094d1b 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-GCC-4.9.2.eb @@ -7,7 +7,7 @@ homepage = 'http://www.gnu.org/software/libtool' description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.""" -toolchain = {'name': 'GCC', 'version': '4.9.2'} +toolchain = {'name': 'GCC', 'version': '4.9.2'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.5-intel-2015a.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..dd9022e00e809937946f7665c83329ee95573c10 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.5-intel-2015a.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.5' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.17')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.7.2.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.7.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..81c5e4cf653a881aef879641aa947f33721d288d --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.7.2.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GCC', 'version': '4.7.2'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.16')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.8.4.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.8.4.eb new file mode 100644 index 0000000000000000000000000000000000000000..e93fcc4049b2bfebc254c1e29457c40d010d4d16 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.8.4.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GCC', 'version': '4.8.4'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.17')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..d4e8dd2add9349a11977ffdcd5195d9894b1c5d7 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GCC-4.9.3-2.25.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.17')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb index f29d89e1c6f27074975fbcf3d6237f7ba5adeab4..6daa86f14ecdc648f966099325e719b2833b80b6 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.2-2.25.eb @@ -7,7 +7,7 @@ homepage = 'http://www.gnu.org/software/libtool' description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.""" -toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} +toolchain = {'name': 'GNU', 'version': '4.9.2-2.25'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.3-2.25.eb index 99efd1e796649386114cc5847624d00d32ca5cb7..714310160567468310e77cc7d0e897df21673f51 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-4.9.3-2.25.eb @@ -7,7 +7,7 @@ homepage = 'http://www.gnu.org/software/libtool' description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.""" -toolchain = {'name': 'GNU', 'version': '4.9.3-2.25'} +toolchain = {'name': 'GNU', 'version': '4.9.3-2.25'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-5.1.0-2.25.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-5.1.0-2.25.eb index 33c6f3867ed98f6470bff34307768d7b5e142edf..290aa77f300336ecb32a66c6bcaba32a84a9d883 100644 --- a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-5.1.0-2.25.eb +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-GNU-5.1.0-2.25.eb @@ -7,7 +7,7 @@ homepage = 'http://www.gnu.org/software/libtool' description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.""" -toolchain = {'name': 'GNU', 'version': '5.1.0-2.25'} +toolchain = {'name': 'GNU', 'version': '5.1.0-2.25'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2015a.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..d420dbd013213537a4479097c0e37ed756b556cc --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2015a.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.17')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016a.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..d14a6fa24feb54cd4deaf85c34ad3240698ebc83 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-foss-2016a.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'foss', 'version': '2016a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.17')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..cbd60cd24a9720fbd2a272559db3c768672472f8 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-ictce-5.5.0.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.16')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2015b.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..f1364b279c59171ea9ffff0d1f0af0279bec94e6 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2015b.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.17')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2016a.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..f2ac301f5612bed35ba3a4a21c3ae8b5e5645c9d --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6-intel-2016a.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.17')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libtool/libtool-2.4.6.eb b/easybuild/easyconfigs/l/libtool/libtool-2.4.6.eb new file mode 100644 index 0000000000000000000000000000000000000000..3533b0aa04e32f52329597d92f786486d9b08e28 --- /dev/null +++ b/easybuild/easyconfigs/l/libtool/libtool-2.4.6.eb @@ -0,0 +1,17 @@ +easyblock = 'ConfigureMake' + +name = 'libtool' +version = '2.4.6' + +homepage = 'http://www.gnu.org/software/libtool' +description = """GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries + behind a consistent, portable interface.""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +dependencies = [('M4', '1.4.17')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-GNU-4.9.3-2.25.eb index 4655c23d9d7f4c5088d8d31aab0b735070917bd1..be0b09dcd1b3e01ee051fb6512768d552087587c 100644 --- a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-GNU-4.9.3-2.25.eb @@ -15,10 +15,10 @@ source_urls = [GNU_SOURCE] parallel = 1 sanity_check_paths = { - 'files' : ['lib/libunistring.a', 'lib/libunistring.so'] + - ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', - 'stdio', 'str', 'types', 'wbrk', 'width']], - 'dirs' : ['include/unistring'], + 'files': ['lib/libunistring.a', 'lib/libunistring.%s' % SHLIB_EXT] + + ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', + 'stdio', 'str', 'types', 'wbrk', 'width']], + 'dirs': ['include/unistring'], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-foss-2015b.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..3c6b226b5a25dfe259d993ddd2466818722152db --- /dev/null +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-foss-2015b.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'libunistring' +version = '0.9.3' + +homepage = 'http://www.gnu.org/software/libunistring/' +description = """This library provides functions for manipulating Unicode strings and for manipulating C strings + according to the Unicode standard.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +parallel = 1 + +sanity_check_paths = { + 'files' : ['lib/libunistring.a', 'lib/libunistring.%s' % SHLIB_EXT] + + ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', + 'stdio', 'str', 'types', 'wbrk', 'width']], + 'dirs' : ['include/unistring'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goalf-1.1.0-no-OFED.eb index 19cf71b9a1bc1bf08127dd31caf72fb85fa27777..299596c2dc49e543530683184a764c034cc68d6f 100644 --- a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goalf-1.1.0-no-OFED.eb @@ -15,10 +15,10 @@ source_urls = [GNU_SOURCE] parallel = 1 sanity_check_paths = { - 'files' : ['lib/libunistring.a', 'lib/libunistring.so'] + - ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', - 'stdio', 'str', 'types', 'wbrk', 'width']], - 'dirs' : ['include/unistring'], + 'files': ['lib/libunistring.a', 'lib/libunistring.%s' % SHLIB_EXT] + + ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', + 'stdio', 'str', 'types', 'wbrk', 'width']], + 'dirs': ['include/unistring'], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goolf-1.4.10.eb index 3370c05aa0bd38dfa218db8cee55ac087faaa155..15da458c2e9c326c76a8767ddcead0038bead44f 100644 --- a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-goolf-1.4.10.eb @@ -14,10 +14,10 @@ source_urls = [GNU_SOURCE] parallel = 1 sanity_check_paths = { - 'files' : ['lib/libunistring.a', 'lib/libunistring.so'] + - ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', - 'stdio', 'str', 'types', 'wbrk', 'width']], - 'dirs' : ['include/unistring'], + 'files': ['lib/libunistring.a', 'lib/libunistring.%s' % SHLIB_EXT] + + ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', + 'stdio', 'str', 'types', 'wbrk', 'width']], + 'dirs': ['include/unistring'], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-4.0.6.eb index 745c60d166a3a7cc2bb065b8e8ead08d18a296b3..0302ef0229b8547a4163efd270ba32ed71ce87a8 100644 --- a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-4.0.6.eb @@ -17,10 +17,10 @@ patches = ['libunistring_icc_builtin_nan-inf.patch'] parallel = 1 sanity_check_paths = { - 'files' : ['lib/libunistring.a', 'lib/libunistring.so'] + - ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', - 'stdio', 'str', 'types', 'wbrk', 'width']], - 'dirs' : ['include/unistring'], + 'files': ['lib/libunistring.a', 'lib/libunistring.%s' % SHLIB_EXT] + + ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', + 'stdio', 'str', 'types', 'wbrk', 'width']], + 'dirs': ['include/unistring'], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-5.3.0.eb index 453aa477598449377400cce807e67d09605fe484..1a64772a1e9994da250be4015fb371913ab0e6b2 100644 --- a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-ictce-5.3.0.eb @@ -17,10 +17,10 @@ patches = ['libunistring_icc_builtin_nan-inf.patch'] parallel = 1 sanity_check_paths = { - 'files' : ['lib/libunistring.a', 'lib/libunistring.so'] + - ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', - 'stdio', 'str', 'types', 'wbrk', 'width']], - 'dirs' : ['include/unistring'], + 'files': ['lib/libunistring.a', 'lib/libunistring.%s' % SHLIB_EXT] + + ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', + 'stdio', 'str', 'types', 'wbrk', 'width']], + 'dirs': ['include/unistring'], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-intel-2015a.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-intel-2015a.eb index 1f2a2690da535fa0bb059d1019dac58cefc2991c..4bce236806628c82edc66fc3870ed814ae8a9ee3 100644 --- a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-intel-2015a.eb @@ -17,10 +17,10 @@ patches = ['libunistring_icc_builtin_nan-inf.patch'] parallel = 1 sanity_check_paths = { - 'files' : ['lib/libunistring.a', 'lib/libunistring.so'] + - ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', - 'stdio', 'str', 'types', 'wbrk', 'width']], - 'dirs' : ['include/unistring'], + 'files': ['lib/libunistring.a', 'lib/libunistring.%s' % SHLIB_EXT] + + ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', + 'stdio', 'str', 'types', 'wbrk', 'width']], + 'dirs': ['include/unistring'], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-intel-2015b.eb b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..19e0b26c921b9ac7415367241745a8fb07588350 --- /dev/null +++ b/easybuild/easyconfigs/l/libunistring/libunistring-0.9.3-intel-2015b.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'libunistring' +version = '0.9.3' + +homepage = 'http://www.gnu.org/software/libunistring/' +description = """This library provides functions for manipulating Unicode strings and for manipulating C strings + according to the Unicode standard.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +patches = ['libunistring_icc_builtin_nan-inf.patch'] + +parallel = 1 + +sanity_check_paths = { + 'files' : ['lib/libunistring.a', 'lib/libunistring.%s' % SHLIB_EXT] + + ['include/uni%s.h' % x for x in ['case', 'conv', 'ctype', 'lbrk', 'name', 'norm', + 'stdio', 'str', 'types', 'wbrk', 'width']], + 'dirs' : ['include/unistring'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goalf-1.1.0-no-OFED.eb index 6d8ba273cc85cf316db5f1961ac898fa8f4de066..64c0ffe76da87a89ff928ab05375035b7b9bc30e 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goalf-1.1.0-no-OFED.eb @@ -25,7 +25,7 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' patches = ['libxc-%(version)s-fix-initialization.patch'] sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goolf-1.4.10.eb index 527700c8cfec3dace2efcfceb3769ced4ab940f4..bd766f2e399ee2fca5e28f2541af11ceb41c9fb9 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-goolf-1.4.10.eb @@ -25,11 +25,10 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' patches = ['libxc-%(version)s-fix-initialization.patch'] sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], 'dirs': ['include'], } parallel = 1 moduleclass = 'chem' - diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-4.1.13.eb index 75f790529979383a3972715663bb746174725265..2df71cc7a74b75b4c277ea10b1c7c88bb15e6118 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-4.1.13.eb @@ -25,11 +25,10 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' patches = ['libxc-%(version)s-fix-initialization.patch'] sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], 'dirs': ['include'], } parallel = 1 moduleclass = 'chem' - diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.3.0.eb index 16b3b342945be71d910b26625af28022e5cc725b..f86e8ff9fbd84150b41751dc0988368e93f6fe99 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.3.0.eb @@ -25,11 +25,10 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' patches = ['libxc-%(version)s-fix-initialization.patch'] sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], 'dirs': ['include'], } parallel = 1 moduleclass = 'chem' - diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.5.0.eb index 67b912636d604431949a6930df2bf68308cefb5c..4c45b545b5f57f417c6b322c76e45f7c4611a2ac 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-ictce-5.5.0.eb @@ -23,11 +23,10 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" FCCPP="$F77 -E" --enable-shared' #runtest = 'check' sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], 'dirs': ['include'], } parallel = 1 moduleclass = 'chem' - diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-intel-2014b.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-intel-2014b.eb index d8bcb279887b19734bb7ed44c76b9651c29cd273..8276d5a07e336ce48c6f5d25267a921f68590f05 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.1-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.1-intel-2014b.eb @@ -23,7 +23,7 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" FCCPP="$F77 -E" --enable-shared' #runtest = 'check' sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goalf-1.1.0-no-OFED.eb index cb5559a2e4934e19db1df7f86815522432276532..af430902a8004f77dd72f16228f3b855b182637d 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goalf-1.1.0-no-OFED.eb @@ -23,7 +23,7 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" FCCPP="/lib/cpp -ansi" --enable-shared #runtest = 'check' sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goolf-1.4.10.eb index 33d403016122fda035151da5d0ed7b674bcd2a0f..0bf711caf0e7a9f6e2038fa8e5e6c7b3a54a71e4 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-goolf-1.4.10.eb @@ -23,7 +23,7 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" FCCPP="/lib/cpp -ansi" --enable-shared #runtest = 'check' sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-4.1.13.eb index 58b1cd150354b5bac212c27d4b1713daf4aa5a7c..5b57d2fd2430fee72e604efe5993e955cee3ff31 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-4.1.13.eb @@ -23,7 +23,7 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' #runtest = 'check' sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb index b055ba4333e08b8bed4eced8aa793eeb50e47c61..e6561d3ed6247b822c632cf1a9f3be9359fdfd6f 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.2-ictce-5.3.0.eb @@ -23,11 +23,10 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' #runtest = 'check' sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], 'dirs': ['include'], } parallel = 1 moduleclass = 'chem' - diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.3-goolf-1.4.10.eb index 119c74e739c6c636f3c068149ed8b297bb8f50ec..c631b87e66aa68755afaed3cb36cfd0eeb8d8978 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.3-goolf-1.4.10.eb @@ -23,7 +23,7 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" FCCPP="/lib/cpp -ansi" --enable-shared #runtest = 'check' sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libxc/libxc-2.0.3-ictce-4.1.13.eb index 64b37d779cb76456927e384a41b24b866d72a651..04a43645113c9579a998d7bb001d1683fe1f9cc4 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.0.3-ictce-4.1.13.eb @@ -23,7 +23,7 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' #runtest = 'check' sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.0-intel-2014b.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.0-intel-2014b.eb index d3bacbccff572ccdf82b82a1622523f6445a5a47..3bee3b3d9c155e4a66d230644eae39462c14e7bc 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.0-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.0-intel-2014b.eb @@ -23,7 +23,7 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' #runtest = 'check' sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-2015.06-XC.eb similarity index 94% rename from easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.25.eb rename to easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-2015.06-XC.eb index 79002b6ce40019a04ee94162628105170c9b3a69..3ef89d660d2d5a6551a9e70c17adc39118ef5380 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-2015.06-XC.eb @@ -7,7 +7,7 @@ homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' description = """Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} toolchainopts = {'opt': True} sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-2015.11-XC.eb similarity index 94% rename from easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.40.eb rename to easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-2015.11-XC.eb index 80df7f4320457430fd61b9f13027831a3c6212fe..bfd88b3c4bccb65f094283d7fe96624aa6c7f4ae 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.2.40.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-2015.11-XC.eb @@ -7,7 +7,7 @@ homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' description = """Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} toolchainopts = {'opt': True} sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.1.29.eb deleted file mode 100644 index 548d650cdec042864a888f6c499ef7f144e45117..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-CrayGNU-5.1.29.eb +++ /dev/null @@ -1,32 +0,0 @@ -easyblock = 'ConfigureMake' - -name = 'libxc' -version = '2.2.1' - -homepage = 'http://www.tddft.org/programs/octopus/wiki/index.php/Libxc' -description = """Libxc is a library of exchange-correlation functionals for density-functional theory. - The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.""" - -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} -toolchainopts = {'opt': True} - -sources = [SOURCE_TAR_GZ] -source_urls = ['http://www.tddft.org/programs/octopus/down.php?file=libxc/'] - -configopts = 'FC="$F77" FCFLAGS="$FFLAGS"' - -# From the libxc mailing list -# To summarize: expect less tests to fail in libxc 2.0.2, but don't expect -# a fully working testsuite soon (unless someone wants to volunteer to do -# it, of course ) In the meantime, unless the majority of the tests -# fail, your build should be fine. -#runtest = 'check' - -sanity_check_paths = { - 'files': ['lib/libxc.a'], - 'dirs': ['include'], -} - -parallel = 1 - -moduleclass = 'chem' diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-2015a.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-2015a.eb index 9ed080064b7e680cc4d999ddd8f87f14ea328766..13f7f941b6fa261a0cece0a4a40cf8c8b2596562 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-2015a.eb @@ -23,7 +23,7 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' #runtest = 'check' sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-para-2014.12.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-para-2014.12.eb index 8ba57e35c50ec5aeeccba9ebdfe3ec339f00ed9e..29ec0af29b724d256704a85f350ced50c205ecce 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-para-2014.12.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.1-intel-para-2014.12.eb @@ -23,7 +23,7 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared --enable-fortran' #runtest = 'check' sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so', 'lib/libxcf90.a', 'lib/libxcf90.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT, 'lib/libxcf90.a', 'lib/libxcf90.%s' % SHLIB_EXT], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.2-foss-2015b.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.2-foss-2015b.eb index 355b1a14f908d1f52d0918d42c362de9a87c731b..b029d7950cf262fbb5e236df5401c2f70accc737 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.2-foss-2015b.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.2-foss-2015b.eb @@ -23,7 +23,7 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' #runtest = 'check' sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.2-intel-2015a.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.2-intel-2015a.eb index 25c12f798e5de9a8b1f4c2961dabb2520d5d2d31..7590c8664b53f7a73aa9b9a100db3725781a4b88 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.2-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.2-intel-2015a.eb @@ -23,7 +23,7 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' #runtest = 'check' sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libxc/libxc-2.2.2-intel-2015b.eb b/easybuild/easyconfigs/l/libxc/libxc-2.2.2-intel-2015b.eb index b07c35e53185c016113075b962ee4a172ee2bde5..96aab1d17858a1c410627bb2d3749ceb7e9dbb8f 100644 --- a/easybuild/easyconfigs/l/libxc/libxc-2.2.2-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libxc/libxc-2.2.2-intel-2015b.eb @@ -23,7 +23,7 @@ configopts = 'FC="$F77" FCFLAGS="$FFLAGS" --enable-shared' #runtest = 'check' sanity_check_paths = { - 'files': ['lib/libxc.a', 'lib/libxc.so'], + 'files': ['lib/libxc.a', 'lib/libxc.%s' % SHLIB_EXT], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.10-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-foss-2014b-Python-2.7.8.eb index 642e8c5309cc052b0cf97ab29001dd2bb531dd18..6921c06b50d83ae461afdd3b26371472e504b9f6 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.10-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-foss-2014b-Python-2.7.8.eb @@ -9,7 +9,7 @@ latency hiding, direct access to the protocol, improved threading support, and e toolchain = {'name': 'foss', 'version': '2014b'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] python = 'Python' @@ -26,10 +26,10 @@ dependencies = [ #preconfigopts = "rm -r aclocal.m4 configure Makefile.in ltmain.sh && ./autogen.sh && " sanity_check_paths = { - 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", - "-randr", "-record", "-render", "-res", "-screensaver", - "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", - "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'files': ['lib/libxcb%s.a' % x for x in ['', '-composite', '-damage', '-dpms', '-dri2', '-glx', + '-randr', '-record', '-render', '-res', '-screensaver', + '-shape', '-shm', '-sync', '-xevie', '-xf86dri', '-xfixes', + '-xinerama', '-xprint', '-xtest', '-xv', '-xvmc']], 'dirs': ['include/xcb', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb index 1ae3d3fbc40c7c0d3f627467989c0e9ededafabb..ce3fc060e88a50251a90d9c048ca0e8be9de4406 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.10-intel-2014b-Python-2.7.8.eb @@ -7,9 +7,9 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -toolchain = {'name': 'intel', 'version': '2014b'} +toolchain = {'name': 'intel', 'version': '2014b'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] python = 'Python' @@ -24,10 +24,10 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", - "-randr", "-record", "-render", "-res", "-screensaver", - "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", - "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'files': ['lib/libxcb%s.a' % x for x in ['', '-composite', '-damage', '-dpms', '-dri2', '-glx', + '-randr', '-record', '-render', '-res', '-screensaver', + '-shape', '-shm', '-sync', '-xevie', '-xf86dri', '-xfixes', + '-xinerama', '-xprint', '-xtest', '-xv', '-xvmc']], 'dirs': ['include/xcb', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.11-goolf-1.5.14-Python-2.7.9.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.11-goolf-1.5.14-Python-2.7.9.eb index bd5e7ed56dd8b8a807b65204d6e6c184a37620bf..5ba8e74d17c3198e755ef0220e72ca9ccea9d95e 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.11-goolf-1.5.14-Python-2.7.9.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.11-goolf-1.5.14-Python-2.7.9.eb @@ -9,7 +9,7 @@ description = """The X protocol C-language Binding (XCB) is a replacement for Xl toolchain = {'name': 'goolf', 'version': '1.5.14'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] python = 'Python' @@ -21,10 +21,10 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", - "-randr", "-record", "-render", "-res", "-screensaver", - "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", - "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'files': ['lib/libxcb%s.a' % x for x in ['', '-composite', '-damage', '-dpms', '-dri2', '-glx', + '-randr', '-record', '-render', '-res', '-screensaver', + '-shape', '-shm', '-sync', '-xevie', '-xf86dri', '-xfixes', + '-xinerama', '-xprint', '-xtest', '-xv', '-xvmc']], 'dirs': ['include/xcb', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.11-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.11-intel-2015a-Python-2.7.10.eb index c1b10ef129b17a1ca369339b4f7cb365ef5a4ba0..24ebce544e2fcb068db8ea5e5517f47f1a9ef39b 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.11-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.11-intel-2015a-Python-2.7.10.eb @@ -7,9 +7,9 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -toolchain = {'name': 'intel', 'version': '2015a'} +toolchain = {'name': 'intel', 'version': '2015a'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] python = 'Python' @@ -24,10 +24,10 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", - "-randr", "-record", "-render", "-res", "-screensaver", - "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", - "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'files': ['lib/libxcb%s.a' % x for x in ['', '-composite', '-damage', '-dpms', '-dri2', '-glx', + '-randr', '-record', '-render', '-res', '-screensaver', + '-shape', '-shm', '-sync', '-xevie', '-xf86dri', '-xfixes', + '-xinerama', '-xprint', '-xtest', '-xv', '-xvmc']], 'dirs': ['include/xcb', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.11-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.11-intel-2015a-Python-2.7.9.eb index 7d200384127ab316952fcf7ef8ba0db83a63c343..5da025a42056104cd2aadb41b946a0ec19e447b5 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.11-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.11-intel-2015a-Python-2.7.9.eb @@ -7,9 +7,9 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -toolchain = {'name': 'intel', 'version': '2015a'} +toolchain = {'name': 'intel', 'version': '2015a'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] python = 'Python' @@ -24,10 +24,10 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", - "-randr", "-record", "-render", "-res", "-screensaver", - "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", - "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'files': ['lib/libxcb%s.a' % x for x in ['', '-composite', '-damage', '-dpms', '-dri2', '-glx', + '-randr', '-record', '-render', '-res', '-screensaver', + '-shape', '-shm', '-sync', '-xevie', '-xf86dri', '-xfixes', + '-xinerama', '-xprint', '-xtest', '-xv', '-xvmc']], 'dirs': ['include/xcb', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.11.1-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.11.1-intel-2015b-Python-2.7.10.eb index d5d178d52d49dfd54ada3e7a9f17286e46c81242..89cf21ee1e830e391877e39a5136a2cf5446b30e 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.11.1-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.11.1-intel-2015b-Python-2.7.10.eb @@ -7,9 +7,9 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -toolchain = {'name': 'intel', 'version': '2015b'} +toolchain = {'name': 'intel', 'version': '2015b'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] python = 'Python' @@ -24,10 +24,10 @@ dependencies = [ ] sanity_check_paths = { - 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", - "-randr", "-record", "-render", "-res", "-screensaver", - "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", - "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'files': ['lib/libxcb%s.a' % x for x in ['', '-composite', '-damage', '-dpms', '-dri2', '-glx', + '-randr', '-record', '-render', '-res', '-screensaver', + '-shape', '-shm', '-sync', '-xevie', '-xf86dri', '-xfixes', + '-xinerama', '-xprint', '-xtest', '-xv', '-xvmc']], 'dirs': ['include/xcb', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.11.1-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.11.1-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..59081eb7760f81c074f1bac92ef52ba79932b7d3 --- /dev/null +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.11.1-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'libxcb' +version = '1.11.1' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pyver = '2.7.11' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), + ('xcb-proto', '1.11', versionsuffix), + ('libXau', '1.0.8'), + ('libpthread-stubs', '0.3'), +] + +sanity_check_paths = { + 'files': ['lib/libxcb%s.a' % x for x in ['', '-composite', '-damage', '-dpms', '-dri2', '-glx', + '-randr', '-record', '-render', '-res', '-screensaver', + '-shape', '-shm', '-sync', '-xevie', '-xf86dri', '-xfixes', + '-xinerama', '-xprint', '-xtest', '-xv', '-xvmc']], + 'dirs': ['include/xcb', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.11.1-intel-2016a.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.11.1-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..098e8569bb68c496a81ab6224dd11b7d4e2fd6b5 --- /dev/null +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.11.1-intel-2016a.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'libxcb' +version = '1.11.1' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [ + ('xcb-proto', '1.11', '', True), + ('xproto', '7.0.28'), + ('libpthread-stubs', '0.3'), +] +dependencies = [ + ('libXau', '1.0.8'), + ('libXdmcp', '1.1.2'), +] + +sanity_check_paths = { + 'files': ['lib/libxcb%s.a' % x for x in ['', '-composite', '-damage', '-dpms', '-dri2', '-glx', + '-randr', '-record', '-render', '-res', '-screensaver', + '-shape', '-shm', '-sync', '-xevie', '-xf86dri', '-xfixes', + '-xinerama', '-xprint', '-xtest', '-xv', '-xvmc']], + 'dirs': ['include/xcb', 'lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goalf-1.1.0-no-OFED-Python-2.7.3.eb index c58daba38a2ac362412a20b0036a6d025ff84daa..3b3682ba69461593b7fa92746673cd7b53604cac 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -9,7 +9,7 @@ description = """The X protocol C-language Binding (XCB) is a replacement for Xl toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] patches = ['libxcb-no-pthread-stubs.patch'] @@ -25,10 +25,10 @@ dependencies = [ preconfigopts = "rm -r aclocal.m4 configure Makefile.in ltmain.sh && ./autogen.sh && " sanity_check_paths = { - 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", - "-randr", "-record", "-render", "-res", "-screensaver", - "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", - "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'files': ['lib/libxcb%s.a' % x for x in ['', '-composite', '-damage', '-dpms', '-dri2', '-glx', + '-randr', '-record', '-render', '-res', '-screensaver', + '-shape', '-shm', '-sync', '-xevie', '-xf86dri', '-xfixes', + '-xinerama', '-xprint', '-xtest', '-xv', '-xvmc']], 'dirs': ['include/xcb', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.4.10-Python-2.7.3.eb index 3be17369402f2b29092e07b3e560cc9825a0b087..ed4684b89c3b0672cb8516d2acef4e513409e7ab 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.4.10-Python-2.7.3.eb @@ -9,7 +9,7 @@ latency hiding, direct access to the protocol, improved threading support, and e toolchain = {'name': 'goolf', 'version': '1.4.10'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] patches = ['libxcb-no-pthread-stubs.patch'] @@ -25,10 +25,10 @@ dependencies = [ preconfigopts = "rm -r aclocal.m4 configure Makefile.in ltmain.sh && ./autogen.sh && " sanity_check_paths = { - 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", - "-randr", "-record", "-render", "-res", "-screensaver", - "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", - "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'files': ['lib/libxcb%s.a' % x for x in ['', '-composite', '-damage', '-dpms', '-dri2', '-glx', + '-randr', '-record', '-render', '-res', '-screensaver', + '-shape', '-shm', '-sync', '-xevie', '-xf86dri', '-xfixes', + '-xinerama', '-xprint', '-xtest', '-xv', '-xvmc']], 'dirs': ['include/xcb', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.3.eb index a3fa51e67e0d24c7a4344c304040e04f115d2859..768ffc0072eb84de068ad71231f8972d027d02d8 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-goolf-1.5.14-Python-2.7.3.eb @@ -9,7 +9,7 @@ latency hiding, direct access to the protocol, improved threading support, and e toolchain = {'name': 'goolf', 'version': '1.5.14'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] patches = ['libxcb-no-pthread-stubs.patch'] @@ -25,10 +25,10 @@ dependencies = [ preconfigopts = "rm -r aclocal.m4 configure Makefile.in ltmain.sh && ./autogen.sh && " sanity_check_paths = { - 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", - "-randr", "-record", "-render", "-res", "-screensaver", - "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", - "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'files': ['lib/libxcb%s.a' % x for x in ['', '-composite', '-damage', '-dpms', '-dri2', '-glx', + '-randr', '-record', '-render', '-res', '-screensaver', + '-shape', '-shm', '-sync', '-xevie', '-xf86dri', '-xfixes', + '-xinerama', '-xprint', '-xtest', '-xv', '-xvmc']], 'dirs': ['include/xcb', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.0.6-Python-2.7.3.eb index 6d757e7d793f43021c1f60103909e24b17499599..228e1f7aafa0fd0e532f7682b1a5a975c372a3d1 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.0.6-Python-2.7.3.eb @@ -9,7 +9,7 @@ description = """The X protocol C-language Binding (XCB) is a replacement for Xl toolchain = {'name': 'ictce', 'version': '4.0.6'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] patches = ['libxcb-no-pthread-stubs.patch'] @@ -25,10 +25,10 @@ dependencies = [ preconfigopts = "rm -r aclocal.m4 configure Makefile.in ltmain.sh && ./autogen.sh && " sanity_check_paths = { - 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", - "-randr", "-record", "-render", "-res", "-screensaver", - "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", - "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'files': ['lib/libxcb%s.a' % x for x in ['', '-composite', '-damage', '-dpms', '-dri2', '-glx', + '-randr', '-record', '-render', '-res', '-screensaver', + '-shape', '-shm', '-sync', '-xevie', '-xf86dri', '-xfixes', + '-xinerama', '-xprint', '-xtest', '-xv', '-xvmc']], 'dirs': ['include/xcb', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.1.13-Python-2.7.3.eb index 09100be56b7e602a0fbd4d3aa0efd746d1a8b640..4733d7980f577d37e81bb44cf0a781c9f8c35bef 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-4.1.13-Python-2.7.3.eb @@ -9,7 +9,7 @@ description = """The X protocol C-language Binding (XCB) is a replacement for Xl toolchain = {'name': 'ictce', 'version': '4.1.13'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] patches = ['libxcb-no-pthread-stubs.patch'] @@ -25,10 +25,10 @@ dependencies = [ preconfigopts = "rm -r aclocal.m4 configure Makefile.in ltmain.sh && ./autogen.sh && " sanity_check_paths = { - 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", - "-randr", "-record", "-render", "-res", "-screensaver", - "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", - "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'files': ['lib/libxcb%s.a' % x for x in ['', '-composite', '-damage', '-dpms', '-dri2', '-glx', + '-randr', '-record', '-render', '-res', '-screensaver', + '-shape', '-shm', '-sync', '-xevie', '-xf86dri', '-xfixes', + '-xinerama', '-xprint', '-xtest', '-xv', '-xvmc']], 'dirs': ['include/xcb', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-5.3.0-Python-2.7.3.eb index 879b645f96be8cc8376cd554b053919c2a96e94f..e27e71a1c51d0822d5898a7658df01c082becfe9 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-ictce-5.3.0-Python-2.7.3.eb @@ -9,7 +9,7 @@ description = """The X protocol C-language Binding (XCB) is a replacement for Xl toolchain = {'name': 'ictce', 'version': '5.3.0'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] patches = ['libxcb-no-pthread-stubs.patch'] @@ -25,10 +25,10 @@ dependencies = [ preconfigopts = "rm -r aclocal.m4 configure Makefile.in ltmain.sh && ./autogen.sh && " sanity_check_paths = { - 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", - "-randr", "-record", "-render", "-res", "-screensaver", - "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", - "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'files': ['lib/libxcb%s.a' % x for x in ['', '-composite', '-damage', '-dpms', '-dri2', '-glx', + '-randr', '-record', '-render', '-res', '-screensaver', + '-shape', '-shm', '-sync', '-xevie', '-xf86dri', '-xfixes', + '-xinerama', '-xprint', '-xtest', '-xv', '-xvmc']], 'dirs': ['include/xcb', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2014b-Python-2.7.8.eb index eca2fdff48c14e5c1f1c11af774c0caf5d7d3bf2..008c8f05f649101b408fc41dd51c737eb9ed256d 100644 --- a/easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/l/libxcb/libxcb-1.8-intel-2014b-Python-2.7.8.eb @@ -9,7 +9,7 @@ description = """The X protocol C-language Binding (XCB) is a replacement for Xl toolchain = {'name': 'intel', 'version': '2014b'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] patches = ['libxcb-no-pthread-stubs.patch'] @@ -25,10 +25,10 @@ dependencies = [ preconfigopts = "rm -r aclocal.m4 configure Makefile.in ltmain.sh && ./autogen.sh && " sanity_check_paths = { - 'files' : ['lib/libxcb%s.a' % x for x in ["", "-composite", "-damage", "-dpms", "-dri2", "-glx", - "-randr", "-record", "-render", "-res", "-screensaver", - "-shape", "-shm", "-sync", "-xevie", "-xf86dri", "-xfixes", - "-xinerama", "-xprint", "-xtest", "-xv", "-xvmc"]], + 'files': ['lib/libxcb%s.a' % x for x in ['', '-composite', '-damage', '-dpms', '-dri2', '-glx', + '-randr', '-record', '-render', '-res', '-screensaver', + '-shape', '-shm', '-sync', '-xevie', '-xf86dri', '-xfixes', + '-xinerama', '-xprint', '-xtest', '-xv', '-xvmc']], 'dirs': ['include/xcb', 'lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/l/libxkbcommon/libxkbcommon-0.5.0-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/l/libxkbcommon/libxkbcommon-0.5.0-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..c8fafe0222dc2fc306730ad12e42a3cfac304634 --- /dev/null +++ b/easybuild/easyconfigs/l/libxkbcommon/libxkbcommon-0.5.0-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'libxkbcommon' +version = '0.5.0' +versionsuffix = '-Python-2.7.11' + +homepage = 'http://xkbcommon.org/' +description = """xkbcommon is a library to handle keyboard descriptions, + including loading them from disk, parsing them and handling their state. + It's mainly meant for client toolkits, window systems, + and other system applications.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://xkbcommon.org/download/'] +sources = [SOURCELOWER_TAR_XZ] + +dependencies = [ + ('libxcb', '1.11.1', versionsuffix), + ('XKeyboardConfig', '2.16', versionsuffix), +] + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.4'), +] + +sanity_check_paths = { + 'files': ['lib/libxkbcommon%s.so' % x for x in ['', '-x11']], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/l/libxkbcommon/libxkbcommon-0.5.0-intel-2015b.eb b/easybuild/easyconfigs/l/libxkbcommon/libxkbcommon-0.5.0-intel-2015b.eb index b315eb6d84d3bbbc5b97abe0ca3ded1a2e514e3f..936890773fd1cd62e48ff0d6ca507e4274a4ceaf 100644 --- a/easybuild/easyconfigs/l/libxkbcommon/libxkbcommon-0.5.0-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libxkbcommon/libxkbcommon-0.5.0-intel-2015b.eb @@ -11,7 +11,7 @@ description = """xkbcommon is a library to handle keyboard descriptions, toolchain = {'name': 'intel', 'version': '2015b'} -source_urls = ['http://xkbcommon.org/download/'] +source_urls = ['http://xkbcommon.org/download/'] sources = [SOURCELOWER_TAR_XZ] dependencies = [ diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 22eb3e4fce6e0812ff6758559ec0c62fb7f7161e..e98bac6018d8b2d18206da236d52f016c17c24fa 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -14,7 +14,7 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' pythonver = '2.7.3' pythonshortver = '.'.join(pythonver.split('.')[0:2]) @@ -26,7 +26,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-goalf-1.1.0-no-OFED.eb index 7557598cd64d9613aad91a05f3e48ab9362c474b..4a4a4816ab2e8285a429accaf788d3b62c0090a9 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-goalf-1.1.0-no-OFED.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-goolf-1.4.10-Python-2.7.3.eb index 60c64c147dcde840645808f5a4bab5a90e895337..e1868be130ff398cabf41c2b25011dc0b7649851 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-goolf-1.4.10-Python-2.7.3.eb @@ -13,7 +13,7 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' pythonver = '2.7.3' pythonshortver = '.'.join(pythonver.split('.')[0:2]) @@ -25,7 +25,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-goolf-1.4.10.eb index 53eca5aa25a0d500aa46bc8d938e4eae1f912a91..00021cddc927def653589c79778a6281c6125a56 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-goolf-1.4.10.eb @@ -15,12 +15,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-4.0.6-Python-2.7.3.eb index 3e93f2c23c41f4c3e905945608cf06bb517cdd57..b82e8e6c939dd27f6797f6fc9bc243ce463660db 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-4.0.6-Python-2.7.3.eb @@ -14,7 +14,7 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' pythonver = '2.7.3' pythonshortver = '.'.join(pythonver.split('.')[0:2]) @@ -26,7 +26,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-4.0.6.eb index 36c184b95a294c22da7af4f0c60ce46c7e11ade9..91e1ffbc9cf78ac331e8e58b273a81ba7b6292a6 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-4.0.6.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-4.1.13-Python-2.7.3.eb index 5c84637a7e6a7b228fb1699ee76c90d5a2189eff..31e824b5ea47acbaa1108c2d55569539d9a1a051 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-4.1.13-Python-2.7.3.eb @@ -14,7 +14,7 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' pythonver = '2.7.3' pythonshortver = '.'.join(pythonver.split('.')[0:2]) @@ -26,7 +26,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-5.3.0-Python-2.7.3.eb index 47ab2a1eaf30dd30964e015ddb10b2ea26fba74a..5a92ef8bcb6c45abb4b30d473c350bbe58df8c0e 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-5.3.0-Python-2.7.3.eb @@ -14,7 +14,7 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' pythonver = '2.7.3' pythonshortver = '.'.join(pythonver.split('.')[0:2]) @@ -26,7 +26,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-5.3.0.eb index 0297dc62f16c0ccd9c36fac6e1c780f88227ffb1..98b15d6f97412023622f8b60ec1e4026c2e5f2bc 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-ictce-5.3.0.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-intel-2015a-Python-2.7.3.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-intel-2015a-Python-2.7.3.eb index b747d1108f7d76dfb72c59840a63611941fbdef6..3f185c7e6d12585f91d9a7e745b987de5b7a23d9 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-intel-2015a-Python-2.7.3.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.8.0-intel-2015a-Python-2.7.3.eb @@ -14,7 +14,7 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' pythonver = '2.7.3' pythonshortver = '.'.join(pythonver.split('.')[0:2]) @@ -26,7 +26,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-goalf-1.1.0-no-OFED.eb index 461d52a9c8e2bacdd93b664eddd517f93e811fe5..0567c075f0559a02c44f88d45f7cba387fc5f747 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-goalf-1.1.0-no-OFED.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-goolf-1.4.10.eb index 9780466535460c5720cb016319abc989dad304af..ee43d716e22326706f520952b966791780ce6699 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-goolf-1.4.10.eb @@ -15,12 +15,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-ictce-4.0.6.eb index f10ab602a59aef8feed069751ca5be3364e77548..06cdc26c7679d6dfc012fc3f827214ac9702c50a 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-ictce-4.0.6.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-ictce-4.1.13.eb index 5d91dfdb96ccb962a58b42d5c22d1ae068f04512..3042a3cf37e83d5e1ec178f26e4a0c42bd539b99 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-ictce-4.1.13.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-ictce-5.3.0.eb index e91eeeeabc9b78aff7a0b393a085ea1af7a91dd2..f0aa6dee9cb24a65f7885798ea62e7ae936da42e 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.0-ictce-5.3.0.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-gmpolf-1.4.8.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-gmpolf-1.4.8.eb index f98f4a1b675989bebc5ccb067a9f521b2c8faea7..33b6562e0fa336106df8fbd81e6b9f53227a9865 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-gmpolf-1.4.8.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-goalf-1.1.0-no-OFED.eb index 728af8a94693e5f43c52fed7d0718b8ebed7597e..e44ddd0d64ca5a953af7c2db67ae22180df00cad 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-goalf-1.1.0-no-OFED.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-goalf-1.5.12-no-OFED.eb index ddfc201d2da00595c64b401afea6adf0a2c7acd2..90b9bc8ea55a69d96978c8aeea8fe38b0163cec1 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-goalf-1.5.12-no-OFED.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-gompi-1.4.12-no-OFED.eb index 04f39a5a5e2afe2c82664100754626c7d2f21f4f..487bf333ac32b6b12eb55d846e3619b50562435b 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-gompi-1.4.12-no-OFED.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-goolf-1.4.10.eb index 85c8e40fd53130964b09bd1952f3619a86f2a9e4..544880545882f3f6c20049a7865e12751323e67b 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-goolf-1.4.10.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-goolf-1.5.14.eb index dc6262f297f24a8310ff036f4f88ca3ef2eab526..b09000568f8db517f296a5991790e8657ed87348 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-goolf-1.5.14.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-4.0.6.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-4.0.6.eb index 63cf588844b53a52703445f235635f5512955f19..3e1cc777901a9cc7426ec2e6fb60fba31a39bff0 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-4.0.6.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-4.1.13.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-4.1.13.eb index 5849c68e0ba5f8f15f5e8386014de4ce131ba6b8..5da629883240603b8ec01e430b14bc98e9c84afd 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-4.1.13.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.2.0.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.2.0.eb index 00ef91bfbe0bd50a4e193754a90f44b6c833fbe3..aa7e4b1f778e00617c3d95c2057846db16512f20 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.2.0.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.3.0.eb index 6454b3c5bcd485aaf2da86d0e79d04e06a571b2c..e50f08d5e37560069cdf6158b737748924811bab 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.3.0.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.7')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.5.0-Python-2.7.6.eb index 8b4ebb1f971939825aca07609205eeff84036118..9d4e84392a22f9d5a177706e700433ffbc5069c9 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.5.0-Python-2.7.6.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.5.0-Python-2.7.6.eb @@ -14,7 +14,7 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' pythonver = '2.7.6' pythonshortver = '.'.join(pythonver.split('.')[0:2]) @@ -26,7 +26,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.5.0.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.5.0.eb index 32892101ebaac548d2e3de5529f506708e00a150..0cdacffa3af6fd2ec1e7825282e6488f47af531b 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-5.5.0.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-7.1.2.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-7.1.2.eb index 4ca7d2ddd74a9b760744b9b090da6af80f95ba95..ca67a911c12c9b5c5244a06bb8a459740ceb6bcd 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-ictce-7.1.2.eb @@ -17,12 +17,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-intel-2014b.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-intel-2014b.eb index 0fdd037332ea1c5035cdbc942c6bfee3f8d8a1ee..c6335dd8b2f74a716215ae7f98f6becd3cae7cdb 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.1-intel-2014b.eb @@ -17,12 +17,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-GCC-4.9.2.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-GCC-4.9.2.eb index 4f3853dc8b4fc821dd7656c8025c6847e5816fc4..841eddc11e74280cdfe8eeebfe8c230067635006 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-GCC-4.9.2.eb @@ -17,12 +17,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-GCC-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..8d892b499fd15242aee8ba21b4c92f8a434cf7df --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-GCC-4.9.3-2.25.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'libxml2' +version = '2.9.2' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and +toolchain developed for the Gnome project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} +toolchainopts = {'pic': True} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' + +dependencies = [('zlib', '1.2.8')] + +sanity_check_paths = { + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], + 'dirs': ['bin', 'include/libxml2/libxml'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-GNU-4.9.3-2.25.eb index aa7e3a45276411fd154df845dcb4f998252079e8..3c33fb41dada3f6026c6e84977b08a46bda80cb2 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-GNU-4.9.3-2.25.eb @@ -16,12 +16,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015a.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015a.eb index 60f233de3e2288bb1bcc8f82b6f7959142fdf05a..ae39cc8c24a233b63d52b459e44d9d655fcce23c 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015a.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015a.eb @@ -17,12 +17,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015b.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015b.eb index 4af0891c8abb0e79ef12e21bb654a7c4a529cfb8..ad02e51c2e0b8cc8fde45590554164500bb40d2c 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015b.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-foss-2015b.eb @@ -17,12 +17,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-goolf-1.5.14.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-goolf-1.5.14.eb index f85a2b61718f864d4770d3e097dc5988c7093c88..f232e382c068930ef87c3117dfc1502063d04f79 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-goolf-1.5.14.eb @@ -17,12 +17,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-goolf-1.7.20.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-goolf-1.7.20.eb index 8b3729f893206d3afe1fbdb461d78ff0bcb67dbf..22d8c149d6182236593bddd12650e24ac05c118c 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-goolf-1.7.20.eb @@ -17,12 +17,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2014.06.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2014.06.eb index 22b90777374860b36500eff766c4220b3fa3de1a..acdd85b6e6aace5c28f4aebde20699524ac346f3 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2014.06.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2014.06.eb @@ -17,12 +17,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2014b.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2014b.eb index 22727637dc909b79e688b6b2178b09df5edbf3a5..22aefe7d0cda545af8245c0aa775c2cfe7e636d8 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2014b.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2014b.eb @@ -17,12 +17,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a-Python-2.7.10.eb index e102ff79f513a26a4e0fa66f6605b8a3e51658eb..37724f23f1b4a7ba85174a824f4ffa561c475639 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a-Python-2.7.10.eb @@ -14,7 +14,7 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' pythonver = '2.7.10' pythonshortver = '.'.join(pythonver.split('.')[0:2]) diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a-Python-2.7.9.eb index da831a62f319b4e41021d03e5ea392741029a2b1..307b1793d4b0e1a6358aa8a2629b6df694701eee 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a-Python-2.7.9.eb @@ -14,7 +14,7 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' pythonver = '2.7.9' pythonshortver = '.'.join(pythonver.split('.')[0:2]) diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a.eb index c052dd338dba35e323aa2cfa315090435e1bbe9f..1a4f4c99c405566e2a75e7207a9e9cae081db8f7 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015a.eb @@ -17,12 +17,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015b.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015b.eb index 6b29a23daad4f87a9a3d758e565ec78dd6825e8d..b95f92dfd972c2ab5f1dc8c34d76ca2032849a8a 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.2-intel-2015b.eb @@ -17,12 +17,12 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' dependencies = [('zlib', '1.2.8')] sanity_check_paths = { - 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.so', 'lib64/libxml2.so')], + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], 'dirs': ['bin', 'include/libxml2/libxml'], } diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-foss-2015a-Python-2.7.11.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-foss-2015a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..6cafc86e4f1dfbfc33ad5c06b6c66069a96293bc --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-foss-2015a-Python-2.7.11.eb @@ -0,0 +1,28 @@ +name = 'libxml2' +version = '2.9.3' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable + outside of the Gnome platform).""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' + +pythonver = '2.7.11' +pythonshortver = '.'.join(pythonver.split('.')[:2]) +versionsuffix = '-%s-%s' % ('Python', pythonver) + +dependencies = [ + ('zlib', '1.2.8'), + ('Python', pythonver), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-goolf-1.7.20.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-goolf-1.7.20.eb new file mode 100644 index 0000000000000000000000000000000000000000..66513c188bb1828608c819f54afe2890174c8cbb --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-goolf-1.7.20.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'libxml2' +version = '2.9.3' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and +toolchain developed for the Gnome project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'goolf', 'version': '1.7.20'} +toolchainopts = {'pic': True} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' + +dependencies = [('zlib', '1.2.8')] + +sanity_check_paths = { + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], + 'dirs': ['bin', 'include/libxml2/libxml'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-intel-2015b-Python-2.7.10.eb index 51c493e7e028e2884739c8ef8963da374ec2c12c..34777c9cc6854fe24010d28e50f4775ff509cd8b 100644 --- a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-intel-2015b-Python-2.7.10.eb @@ -14,7 +14,7 @@ source_urls = [ ] sources = [SOURCELOWER_TAR_GZ] -configopts = 'CC="$CC" CXX="$CXX" --with-pic' +configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' pythonver = '2.7.10' pythonshortver = '.'.join(pythonver.split('.')[0:2]) diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..b28071061aede91e38954f4b53595cce896a95b2 --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,28 @@ +name = 'libxml2' +version = '2.9.3' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable + outside of the Gnome platform).""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'pic': True} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' + +pythonver = '2.7.11' +pythonshortver = '.'.join(pythonver.split('.')[:2]) +versionsuffix = '-%s-%s' % ('Python', pythonver) + +dependencies = [ + ('zlib', '1.2.8'), + ('Python', pythonver), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..41e2af0e98c1c7b46d1cfb791bef67d5eb1eacd6 --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,28 @@ +name = 'libxml2' +version = '2.9.3' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable + outside of the Gnome platform).""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'pic': True} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +configopts = 'CC="$CC" CXX="$CXX" --with-pic --with-zlib=$EBROOTZLIB' + +pyver = '2.7.11' +pyshortver = '.'.join(pyver.split('.')[:2]) +versionsuffix = '-Python-%s' % pyver + +dependencies = [ + ('zlib', '1.2.8'), + ('Python', pyver), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-intel-2016a.eb b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..b762d969015cee07367d5f5be54962ad7912cfe8 --- /dev/null +++ b/easybuild/easyconfigs/l/libxml2/libxml2-2.9.3-intel-2016a.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'libxml2' +version = '2.9.3' + +homepage = 'http://xmlsoft.org/' +description = """Libxml2 is the XML C parser and +toolchain developed for the Gnome project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'pic': True} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] +sources = [SOURCELOWER_TAR_GZ] + +configopts = 'CC="$CC" CXX="$CXX" --with-pic --without-python --with-zlib=$EBROOTZLIB' + +dependencies = [('zlib', '1.2.8')] + +sanity_check_paths = { + 'files': [('lib/libxml2.a', 'lib64/libxml2.a'), ('lib/libxml2.%s' % SHLIB_EXT, 'lib64/libxml2.%s' % SHLIB_EXT)], + 'dirs': ['bin', 'include/libxml2/libxml'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..8b441173325be6b3c2d026cd5e92cba537c09b23 --- /dev/null +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libxslt' +version = '1.1.28' +versionsuffix = '-Python-2.7.11' + +homepage = 'http://xmlsoft.org/' +description = """Libxslt is the XSLT C library developed for the GNOME project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] + +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('zlib', '1.2.8'), + ('libxml2', '2.9.3', versionsuffix), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..c1402800ba28697342285447090883678bbdf5eb --- /dev/null +++ b/easybuild/easyconfigs/l/libxslt/libxslt-1.1.28-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'libxslt' +version = '1.1.28' +versionsuffix = '-Python-2.7.11' + +homepage = 'http://xmlsoft.org/' +description = """Libxslt is the XSLT C library developed for the GNOME project + (but usable outside of the Gnome platform).""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [ + 'http://xmlsoft.org/sources/', + 'http://xmlsoft.org/sources/old/' +] + +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('zlib', '1.2.8'), + ('libxml2', '2.9.3', versionsuffix), +] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb index c595540a201c7e6ffc34a8452fc5b6f799295fd6..3a532844038a11bfe30420664d603ea2b78ff34d 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goalf-1.1.0-no-OFED.eb @@ -21,8 +21,8 @@ sources = ['yaml-%(version)s.tar.gz'] source_urls = ['http://pyyaml.org/download/libyaml/'] sanity_check_paths = { - 'files': ["include/yaml.h", "lib/libyaml.a", "lib/libyaml.so"], - 'dirs': ["lib/pkgconfig"] - } + 'files': ["include/yaml.h", "lib/libyaml.a", "lib/libyaml.%s" % SHLIB_EXT], + 'dirs': ["lib/pkgconfig"] +} moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb index 0e518d9646e1b4d3b58de74515442f0221acb27e..1383948289860f990c8d718b919a456046811f70 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-goolf-1.4.10.eb @@ -20,8 +20,8 @@ sources = ['yaml-%(version)s.tar.gz'] source_urls = ['http://pyyaml.org/download/libyaml/'] sanity_check_paths = { - 'files': ["include/yaml.h", "lib/libyaml.a", "lib/libyaml.so"], - 'dirs': ["lib/pkgconfig"] - } + 'files': ["include/yaml.h", "lib/libyaml.a", "lib/libyaml.%s" % SHLIB_EXT], + 'dirs': ["lib/pkgconfig"] +} moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb index 750f58b2de85e102894d0e0c15555faa753d3783..ff0da7e03391fd45232dab02b009f3f4d9084022 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.4-ictce-5.3.0.eb @@ -21,7 +21,7 @@ sources = ['yaml-%(version)s.tar.gz'] source_urls = ['http://pyyaml.org/download/libyaml/'] sanity_check_paths = { - 'files': ["include/yaml.h", "lib/libyaml.a", "lib/libyaml.so"], + 'files': ["include/yaml.h", "lib/libyaml.a", "lib/libyaml.%s" % SHLIB_EXT], 'dirs': ["lib/pkgconfig"] } diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015a.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015a.eb index 7b42e2d0837cd106981a9343e87aa2e9cbb42c1b..2a9749a5815e3e371fccc9dfe90454cd19df439d 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015a.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015a.eb @@ -21,7 +21,7 @@ sources = ['yaml-%(version)s.tar.gz'] source_urls = ['http://pyyaml.org/download/libyaml/'] sanity_check_paths = { - 'files': ["include/yaml.h", "lib/libyaml.a", "lib/libyaml.so"], + 'files': ["include/yaml.h", "lib/libyaml.a", "lib/libyaml.%s" % SHLIB_EXT], 'dirs': ["lib/pkgconfig"] } diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015b.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015b.eb index 581b8cb56bb2a8eed622664de0d48af2cc4d4cab..cf285fb5ecb2cd32323366a8c9fc0148f0399b26 100644 --- a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015b.eb +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2015b.eb @@ -21,7 +21,7 @@ sources = ['yaml-%(version)s.tar.gz'] source_urls = ['http://pyyaml.org/download/libyaml/'] sanity_check_paths = { - 'files': ["include/yaml.h", "lib/libyaml.a", "lib/libyaml.so"], + 'files': ["include/yaml.h", "lib/libyaml.a", "lib/libyaml.%s" % SHLIB_EXT], 'dirs': ["lib/pkgconfig"] } diff --git a/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016a.eb b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..c715793903da7dea239ad4d648a07f8184e2351b --- /dev/null +++ b/easybuild/easyconfigs/l/libyaml/libyaml-0.1.6-intel-2016a.eb @@ -0,0 +1,28 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Nils Christian +# License:: MIT/GPL +# $Id$ +## + +easyblock = 'ConfigureMake' + +name = 'libyaml' +version = '0.1.6' + +homepage = 'http://pyyaml.org/wiki/LibYAML' +description = """LibYAML is a YAML 1.1 parser and emitter written in C.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = ['yaml-%(version)s.tar.gz'] +source_urls = ['http://pyyaml.org/download/libyaml/'] + +sanity_check_paths = { + 'files': ["include/yaml.h", "lib/libyaml.a", "lib/libyaml.%s" % SHLIB_EXT], + 'dirs': ["lib/pkgconfig"] +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED-pinomp.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED-pinomp.eb index c2776bf36f2339c842bdc23a38a7b9128358b4df..132721bab520e6e57a334e120f190956a4569a7b 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED-pinomp.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED-pinomp.eb @@ -16,13 +16,13 @@ source_urls = [GOOGLECODE_SOURCE] patches = ['pinomp-pthread-overload.patch'] skipsteps = ['configure'] -buildopts='CC="$CC" CFLAGS="$CFLAGS"' +buildopts = 'CC="$CC" CFLAGS="$CFLAGS"' installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { 'files': ["bin/likwid-features", "bin/likwid-memsweeper", "bin/likwid-mpirun", "bin/likwid-perfctr", "bin/likwid-perfscope", "bin/likwid-pin", "bin/likwid-powermeter", "bin/likwid-topology", - "lib/liblikwidpin.so" , "lib/liblikwid.a"], + "lib/liblikwidpin.%s" % SHLIB_EXT, "lib/liblikwid.a"], 'dirs': ["man/man1"] } diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED.eb index 124ce106488aa2c5c1f02a90f60ad50b42d397a5..669fa552aa532219ebace577134647af6b68f13d 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goalf-1.1.0-no-OFED.eb @@ -13,13 +13,13 @@ sources = [SOURCE_TAR_GZ] source_urls = [GOOGLECODE_SOURCE] skipsteps = ['configure'] -buildopts='CC="$CC" CFLAGS="$CFLAGS"' +buildopts = 'CC="$CC" CFLAGS="$CFLAGS"' installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { 'files': ["bin/likwid-features", "bin/likwid-memsweeper", "bin/likwid-mpirun", "bin/likwid-perfctr", "bin/likwid-perfscope", "bin/likwid-pin", "bin/likwid-powermeter", "bin/likwid-topology", - "lib/liblikwidpin.so", "lib/liblikwid.a"], + "lib/liblikwidpin.%s" % SHLIB_EXT, "lib/liblikwid.a"], 'dirs': ["man/man1"] } diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10-pinomp.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10-pinomp.eb index 98e3f2bc6930b1f173dd5d5b21eb9e02932ab353..0c0b62a221b1cba8e9e160829866d48a1c6076c0 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10-pinomp.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10-pinomp.eb @@ -16,13 +16,13 @@ source_urls = [GOOGLECODE_SOURCE] patches = ['pinomp-pthread-overload.patch'] skipsteps = ['configure'] -buildopts='CC="$CC" CFLAGS="$CFLAGS"' +buildopts = 'CC="$CC" CFLAGS="$CFLAGS"' installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { 'files': ["bin/likwid-features", "bin/likwid-memsweeper", "bin/likwid-mpirun", "bin/likwid-perfctr", "bin/likwid-perfscope", "bin/likwid-pin", "bin/likwid-powermeter", "bin/likwid-topology", - "lib/liblikwidpin.so" , "lib/liblikwid.a"], + "lib/liblikwidpin.%s" % SHLIB_EXT, "lib/liblikwid.a"], 'dirs': ["man/man1"] } diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10.eb index 7008e1d1c4944465f3a9822be0a476dc3ca5ebfa..ec93432ba45496d74addac73cc3ba094f3e10ba0 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-goolf-1.4.10.eb @@ -13,13 +13,13 @@ sources = [SOURCE_TAR_GZ] source_urls = [GOOGLECODE_SOURCE] skipsteps = ['configure'] -buildopts='CC="$CC" CFLAGS="$CFLAGS"' +buildopts = 'CC="$CC" CFLAGS="$CFLAGS"' installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { 'files': ["bin/likwid-features", "bin/likwid-memsweeper", "bin/likwid-mpirun", "bin/likwid-perfctr", "bin/likwid-perfscope", "bin/likwid-pin", "bin/likwid-powermeter", "bin/likwid-topology", - "lib/liblikwidpin.so", "lib/liblikwid.a"], + "lib/liblikwidpin.%s" % SHLIB_EXT, "lib/liblikwid.a"], 'dirs': ["man/man1"] } diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13-pinomp.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13-pinomp.eb index a7934235d050296e991e73d486b8b0c9b3646da6..e4ad87b3072238ae0333aeab98c56906b1aaf7fc 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13-pinomp.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13-pinomp.eb @@ -16,13 +16,13 @@ source_urls = [GOOGLECODE_SOURCE] patches = ['pinomp-pthread-overload.patch'] skipsteps = ['configure'] -buildopts='CC="$CC" CFLAGS="$CFLAGS"' +buildopts = 'CC="$CC" CFLAGS="$CFLAGS"' installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { 'files': ["bin/likwid-features", "bin/likwid-memsweeper", "bin/likwid-mpirun", "bin/likwid-perfctr", "bin/likwid-perfscope", "bin/likwid-pin", "bin/likwid-powermeter", "bin/likwid-topology", - "lib/liblikwidpin.so", "lib/liblikwid.a"], + "lib/liblikwidpin.%s" % SHLIB_EXT, "lib/liblikwid.a"], 'dirs': ["man/man1"] } diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13.eb index 0202739bca00601192ccd4d72f9d59cce372c9e5..5861b6ec0ba9596a532ad111f6b6ac0745bff7e3 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-4.1.13.eb @@ -13,13 +13,13 @@ sources = [SOURCE_TAR_GZ] source_urls = [GOOGLECODE_SOURCE] skipsteps = ['configure'] -buildopts='CC="$CC" CFLAGS="$CFLAGS"' +buildopts = 'CC="$CC" CFLAGS="$CFLAGS"' installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { 'files': ["bin/likwid-features", "bin/likwid-memsweeper", "bin/likwid-mpirun", "bin/likwid-perfctr", "bin/likwid-perfscope", "bin/likwid-pin", "bin/likwid-powermeter", "bin/likwid-topology", - "lib/liblikwidpin.so", "lib/liblikwid.a"], + "lib/liblikwidpin.%s" % SHLIB_EXT, "lib/liblikwid.a"], 'dirs': ["man/man1"] } diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0-pinomp.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0-pinomp.eb index 0bcdcea56d7348ab46007dbc1b72f6f3fe15ae2a..8e3bb39ecc8a37e3860d02f53e8930a643169886 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0-pinomp.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0-pinomp.eb @@ -16,13 +16,13 @@ source_urls = [GOOGLECODE_SOURCE] patches = ['pinomp-pthread-overload.patch'] skipsteps = ['configure'] -buildopts='CC="$CC" CFLAGS="$CFLAGS"' +buildopts = 'CC="$CC" CFLAGS="$CFLAGS"' installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { 'files': ["bin/likwid-features", "bin/likwid-memsweeper", "bin/likwid-mpirun", "bin/likwid-perfctr", "bin/likwid-perfscope", "bin/likwid-pin", "bin/likwid-powermeter", "bin/likwid-topology", - "lib/liblikwidpin.so", "lib/liblikwid.a"], + "lib/liblikwidpin.%s" % SHLIB_EXT, "lib/liblikwid.a"], 'dirs': ["man/man1"] } diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0.eb b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0.eb index 357fb0550dfd53cc57c3b5b95dbbe987e5ad934b..38eedbb46e23be4b21d2c2b9616eb24fe3de85f8 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.0.0-ictce-5.3.0.eb @@ -13,13 +13,13 @@ sources = [SOURCE_TAR_GZ] source_urls = [GOOGLECODE_SOURCE] skipsteps = ['configure'] -buildopts='CC="$CC" CFLAGS="$CFLAGS"' +buildopts = 'CC="$CC" CFLAGS="$CFLAGS"' installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { 'files': ["bin/likwid-features", "bin/likwid-memsweeper", "bin/likwid-mpirun", "bin/likwid-perfctr", "bin/likwid-perfscope", "bin/likwid-pin", "bin/likwid-powermeter", "bin/likwid-topology", - "lib/liblikwidpin.so", "lib/liblikwid.a"], + "lib/liblikwidpin.%s" % SHLIB_EXT, "lib/liblikwid.a"], 'dirs': ["man/man1"] } diff --git a/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a.eb b/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a.eb index 63f25c7e42f359ae9175d48b07483e71e2899c81..8e33280ec2042745e69253d14027a1d92edd371b 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-3.1.3-intel-2015a.eb @@ -19,7 +19,7 @@ installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { 'files': ["bin/likwid-features", "bin/likwid-memsweeper", "bin/likwid-mpirun", "bin/likwid-perfctr", "bin/likwid-perfscope", "bin/likwid-pin", "bin/likwid-powermeter", "bin/likwid-topology", - "lib/liblikwidpin.so", "lib/liblikwid.a"], + "lib/liblikwidpin.%s" % SHLIB_EXT, "lib/liblikwid.a"], 'dirs': ["man/man1"] } diff --git a/easybuild/easyconfigs/l/likwid/likwid-4.0.1-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/l/likwid/likwid-4.0.1-GNU-4.9.3-2.25.eb index 5b4c4dc112400f3491ef072d288206856ab8d1f0..2a2856e4d30ffa868208242ba991aaa1130200f9 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-4.0.1-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-4.0.1-GNU-4.9.3-2.25.eb @@ -22,7 +22,7 @@ installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { 'files': ["bin/likwid-memsweeper", "bin/likwid-mpirun", "bin/likwid-perfctr", "bin/likwid-perfscope", "bin/likwid-pin", "bin/likwid-powermeter", "bin/likwid-topology", - "lib/liblikwidpin.so", "lib/liblikwid.so"], + "lib/liblikwidpin.%s" % SHLIB_EXT, "lib/liblikwid.%s" % SHLIB_EXT], 'dirs': ["man/man1"] } diff --git a/easybuild/easyconfigs/l/likwid/likwid-4.0.1-ictce-4.1.13.eb b/easybuild/easyconfigs/l/likwid/likwid-4.0.1-ictce-4.1.13.eb index dee1d84dba8ce6efa38fe2390ea2ee8f068acc0c..513b07277d1e71274463f90d4c0c17fda83fba7b 100644 --- a/easybuild/easyconfigs/l/likwid/likwid-4.0.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/l/likwid/likwid-4.0.1-ictce-4.1.13.eb @@ -22,7 +22,7 @@ installopts = 'PREFIX=%(installdir)s' sanity_check_paths = { 'files': ["bin/likwid-memsweeper", "bin/likwid-mpirun", "bin/likwid-perfctr", "bin/likwid-perfscope", "bin/likwid-pin", "bin/likwid-powermeter", "bin/likwid-topology", - "lib/liblikwidpin.so", "lib/liblikwid.so"], + "lib/liblikwidpin.%s" % SHLIB_EXT, "lib/liblikwid.%s" % SHLIB_EXT], 'dirs': ["man/man1"] } diff --git a/easybuild/easyconfigs/l/lxml/lxml-3.5.0-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/l/lxml/lxml-3.5.0-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..c1b483c4c3a9c7ae29246ef05056b4d4cd65d95d --- /dev/null +++ b/easybuild/easyconfigs/l/lxml/lxml-3.5.0-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,30 @@ +easyblock = 'PythonPackage' + +name = 'lxml' +version = '3.5.0' + +homepage = 'http://lxml.de/' +description = """The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://lxml.de/files/'] +sources = [SOURCE_TGZ] + +pyver = '2.7.11' +pyshortver = '.'.join(pyver.split('.')[:2]) + +versionsuffix = '-Python-%s' % pyver + +dependencies = [ + ('Python', pyver), + ('libxml2', '2.9.3', versionsuffix), + ('libxslt', '1.1.28', versionsuffix), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages' % pyshortver], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/l/lxml/lxml-3.5.0-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/l/lxml/lxml-3.5.0-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..e06da544f241e9066196fe02c32cc1ee5f5881e4 --- /dev/null +++ b/easybuild/easyconfigs/l/lxml/lxml-3.5.0-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,30 @@ +easyblock = 'PythonPackage' + +name = 'lxml' +version = '3.5.0' + +homepage = 'http://lxml.de/' +description = """The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['http://lxml.de/files/'] +sources = [SOURCE_TGZ] + +pyver = '2.7.11' +pyshortver = '.'.join(pyver.split('.')[:2]) + +versionsuffix = '-Python-%s' % pyver + +dependencies = [ + ('Python', pyver), + ('libxml2', '2.9.3', versionsuffix), + ('libxslt', '1.1.28', versionsuffix), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages' % pyshortver], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-goalf-1.1.0-no-OFED.eb index 9ced23daf9efed0050dcb24cfaf76af167bf6f3b..e90e4b4187c482a745f069e6099ba55e6a69d03f 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-goalf-1.1.0-no-OFED.eb @@ -9,7 +9,7 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" -toolchain = {'name': 'goalf', 'version' : '1.1.0-no-OFED'} +toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.5.14.eb b/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.5.14.eb index b2b44741465cd4bc3595fb272c77d10b713f9145..0cb44a3cfb211d42229b5e1287b9afb64ba89cac 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.16-goolf-1.5.14.eb @@ -10,7 +10,7 @@ It is mostly SVR4 compatible although it has some extensions GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc. """ -toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchain = {'name': 'goolf', 'version': '1.5.14'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.06-XC.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.06-XC.eb new file mode 100644 index 0000000000000000000000000000000000000000..68ee7aa23b8022ae263d903304f4dfe632fd4dec --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.06-XC.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.11-XC.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.11-XC.eb new file mode 100644 index 0000000000000000000000000000000000000000..fd7cafa798b0b63429f10cb06e6623ec2c0599d3 --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-2015.11-XC.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.7.2.eb similarity index 92% rename from easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.25.eb rename to easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.7.2.eb index 06f80557f1dfc8dfa1c1183e832f05cbc2b892de..b62284872a3046da08afe97e8232ba453bc4cbc0 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.7.2.eb @@ -8,7 +8,7 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchain = {'name': 'GCC', 'version': '4.7.2'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-2.25.eb similarity index 92% rename from easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.40.eb rename to easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-2.25.eb index d1ac7167dc7a06ffaae85125f2b049841401a091..0fa72c61c98b4f6fb3b8fed618866eeed23b0c70 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.2.40.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-GCC-4.9.3-2.25.eb @@ -8,7 +8,7 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015b.eb similarity index 92% rename from easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.1.29.eb rename to easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015b.eb index de4b32575675f1b9c1329f556ee86245512acba5..b66775c7a65ed48fb4d386435270650e7355355a 100644 --- a/easybuild/easyconfigs/m/M4/M4-1.4.17-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2015b.eb @@ -8,7 +8,7 @@ description = """GNU M4 is an implementation of the traditional Unix macro proce although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchain = {'name': 'foss', 'version': '2015b'} sources = [SOURCELOWER_TAR_GZ] source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016a.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..0d030e3264daafe90d23c28443ae3d9bf0ec2a2b --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-foss-2016a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'foss', 'version': '2016a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016a.eb b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..519be6b6b35287fd2d2c870271b33bcaa569412e --- /dev/null +++ b/easybuild/easyconfigs/m/M4/M4-1.4.17-intel-2016a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'M4' +version = '1.4.17' + +homepage = 'http://www.gnu.org/software/m4/m4.html' +description = """GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible + although it has some extensions (for example, handling more than 9 positional parameters to macros). + GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [GNU_SOURCE] + +configopts = "--enable-cxx" + +sanity_check_paths = { + 'files': ["bin/m4"], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/MACS2/MACS2-2.1.0.20150731-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/m/MACS2/MACS2-2.1.0.20150731-goolf-1.4.10-Python-2.7.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..74d5a36f68061da53233e8a7c768bb9742dfa6f0 --- /dev/null +++ b/easybuild/easyconfigs/m/MACS2/MACS2-2.1.0.20150731-goolf-1.4.10-Python-2.7.3.eb @@ -0,0 +1,47 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright (c) 2015 Virginia Bioinformatics Institute at Virginia Tech +# Authors:: Dominik L. Borkowski +# License:: MIT/GPL +# $Id$ +# +## + +easyblock = 'PythonPackage' + +name = 'MACS2' +version = '2.1.0.20150731' + +homepage = 'https://github.com/taoliu/MACS/' +description = "Model Based Analysis for ChIP-Seq data" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pyver = '2.7.3' +pyshortver = '.'.join(pyver.split('.')[0:2]) +pylibdir = 'lib/python%s/site-packages' % pyshortver +versionsuffix = "-%s-%s" % (python, pyver) + +dependencies = [ + (python, pyver), + ('numpy', '1.7.1', versionsuffix), +] + +options = {'modulename': name} + +# specify that this asyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': ['bin/macs2', '%s/%s-%s-py%s-linux-x86_64.egg' % (pylibdir, name, version, pyshortver)], + 'dirs': [], +} + +sanity_check_commands = [('%(namelower)s --version')] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/MAST/MAST-20160111-intel-2015b-R-3.2.1.eb b/easybuild/easyconfigs/m/MAST/MAST-20160111-intel-2015b-R-3.2.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..c085da3378d623f1d9d62964655f1fea5c143d30 --- /dev/null +++ b/easybuild/easyconfigs/m/MAST/MAST-20160111-intel-2015b-R-3.2.1.eb @@ -0,0 +1,25 @@ +easyblock = 'RPackage' + +name = 'MAST' +version = '20160111' +versionsuffix = '-R-%(rver)s' + +homepage = 'https://github.com/RGLab/MAST' +description = """Tools and methods for analysis of single cell assay data in R""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['https://github.com/RGLab/MAST/archive/'] +sources = ['8234b18.tar.gz'] + +dependencies = [ + ('R', '3.2.1'), + ('R-bundle-Bioconductor', '3.1', versionsuffix), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['%(name)s'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-goolf-1.4.10.eb index 79d3f53e5ad6a9edbab99b0717ef9196c15d60ff..2f00cc2dbdd56cbaccf6ec72909079dfa281ac5a 100644 --- a/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-goolf-1.4.10.eb @@ -19,6 +19,6 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_ZIP] -dependencies = [('zlib','1.2.7')] +dependencies = [('zlib', '1.2.7')] moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-intel-2015b.eb b/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..9fb67afb2a35d4301ece629f143a18bb97308aee --- /dev/null +++ b/easybuild/easyconfigs/m/MATIO/MATIO-1.5.2-intel-2015b.eb @@ -0,0 +1,24 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2014-2015 The Cyprus Institute +# Authors:: Thekla Loizou +# License:: MIT/GPL +# +## +easyblock = 'ConfigureMake' + +name = 'MATIO' +version = '1.5.2' + +homepage = 'http://sourceforge.net/projects/matio/' +description = """matio is an C library for reading and writing Matlab MAT files.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_ZIP] + +dependencies = [('zlib', '1.2.8')] + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/MATLAB/MATLAB-2012b.eb b/easybuild/easyconfigs/m/MATLAB/MATLAB-2012b.eb index 8deb5537516b3aa1c5af7ef29019d80799446441..b0b8036c47660933fa83884b8e72ebff20c604e8 100644 --- a/easybuild/easyconfigs/m/MATLAB/MATLAB-2012b.eb +++ b/easybuild/easyconfigs/m/MATLAB/MATLAB-2012b.eb @@ -6,11 +6,11 @@ description = """MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = [SOURCELOWER_TAR_GZ] -dependencies =[('Java', '1.7.0_10')] +dependencies = [('Java', '1.7.0_10')] import os license_server = os.getenv('EB_MATLAB_LICENSE_SERVER', 'license.example.com') diff --git a/easybuild/easyconfigs/m/MATLAB/MATLAB-2015a.eb b/easybuild/easyconfigs/m/MATLAB/MATLAB-2015a.eb index acdae43db5801fa2c7705d9c7068144a62839aa9..65e39e18726fcae599612fd9e26f0cf39a311481 100644 --- a/easybuild/easyconfigs/m/MATLAB/MATLAB-2015a.eb +++ b/easybuild/easyconfigs/m/MATLAB/MATLAB-2015a.eb @@ -6,7 +6,7 @@ description = """MATLAB is a high-level language and interactive environment that enables you to perform computationally intensive tasks faster than with traditional programming languages such as C, C++, and Fortran.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb index 54d1c4d20bec738822a06108cd274a63747dcb38..e322ccb0af241ec05739c25e9f076ad72b111852 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-goalf-1.1.0-no-OFED.eb @@ -29,8 +29,8 @@ sources = ['mcl-%s.tar.gz' % '-'.join(version.split('.'))] source_urls = ['http://micans.org/mcl/src/'] sanity_check_paths = { - 'files': ["bin/mcl"], - 'dirs': ["share"] - } + 'files': ["bin/mcl"], + 'dirs': ["share"] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb index 0b7a65ab006bf8fc5243daff1d0b8e4f07ba760d..b1a95f40315c0e5fe1ad6bc379d7ac39f988d91f 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-goolf-1.4.10.eb @@ -28,8 +28,8 @@ sources = ['mcl-%s.tar.gz' % '-'.join(version.split('.'))] source_urls = ['http://micans.org/mcl/src/'] sanity_check_paths = { - 'files': ["bin/mcl"], - 'dirs': ["share"] - } + 'files': ["bin/mcl"], + 'dirs': ["share"] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb index b2dec05ab596833231db741b8e3fd3407cb4cf20..232ec42670f95dfab7498b4e02dc3523d62caea9 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.0.6.eb @@ -29,8 +29,8 @@ sources = ['mcl-%s.tar.gz' % '-'.join(version.split('.'))] source_urls = ['http://micans.org/mcl/src/'] sanity_check_paths = { - 'files': ["bin/mcl"], - 'dirs': ["share"] - } + 'files': ["bin/mcl"], + 'dirs': ["share"] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb index 26b2a9bb86086571f18356fea47fc0b2f07bf3ae..3edc17b8e9ded09045ccad28077efa74d3e81ad3 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-4.1.13.eb @@ -29,8 +29,8 @@ sources = ['mcl-%s.tar.gz' % '-'.join(version.split('.'))] source_urls = ['http://micans.org/mcl/src/'] sanity_check_paths = { - 'files': ["bin/mcl"], - 'dirs': ["share"] - } + 'files': ["bin/mcl"], + 'dirs': ["share"] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb index b84227a5587900147de9f0be13a575530de5a0b4..0619f29465bb1fd6c9f1f2677cc6aee95ff6b8c9 100644 --- a/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/MCL/MCL-12.135-ictce-5.3.0.eb @@ -30,8 +30,8 @@ sources = ['mcl-%s.tar.gz' % '-'.join(version.split('.'))] source_urls = ['http://micans.org/mcl/src/'] sanity_check_paths = { - 'files': ["bin/mcl"], - 'dirs': ["share"] - } + 'files': ["bin/mcl"], + 'dirs': ["share"] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/MCR/MCR-R2014a.eb b/easybuild/easyconfigs/m/MCR/MCR-R2014a.eb index 7efec1287d0f127808fe9078fdcfd5ff60230223..67a1f3909647f72a0a1cf75ccb8b6f65cd0ca5e4 100644 --- a/easybuild/easyconfigs/m/MCR/MCR-R2014a.eb +++ b/easybuild/easyconfigs/m/MCR/MCR-R2014a.eb @@ -6,11 +6,13 @@ description = """The MATLAB Runtime is a standalone set of shared libraries that enables the execution of compiled MATLAB applications or components on computers that do not have MATLAB installed.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} -source_urls = ['http://www.mathworks.com/supportfiles/downloads/%(version)s/deployment_files/%(version)s/installers/glnxa64/'] +source_urls = [ + 'http://www.mathworks.com/supportfiles/downloads/%(version)s/deployment_files/%(version)s/installers/glnxa64/', +] sources = ['%(name)s_%(version)s_glnxa64_installer.zip'] -dependencies =[('Java', '1.8.0_31')] +dependencies = [('Java', '1.8.0_31')] moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MCR/MCR-R2015a.eb b/easybuild/easyconfigs/m/MCR/MCR-R2015a.eb index e0b5326bd60b3ce84d093900ae7237193704baf6..ccbd003e89a51cd9c7dbb0f8771aaa9ccc6091fe 100644 --- a/easybuild/easyconfigs/m/MCR/MCR-R2015a.eb +++ b/easybuild/easyconfigs/m/MCR/MCR-R2015a.eb @@ -6,11 +6,13 @@ description = """The MATLAB Runtime is a standalone set of shared libraries that enables the execution of compiled MATLAB applications or components on computers that do not have MATLAB installed.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} -source_urls = ['http://www.mathworks.com/supportfiles/downloads/%(version)s/deployment_files/%(version)s/installers/glnxa64/'] +source_urls = [ + 'http://www.mathworks.com/supportfiles/downloads/%(version)s/deployment_files/%(version)s/installers/glnxa64/', +] sources = ['%(name)s_%(version)s_glnxa64_installer.zip'] -dependencies =[('Java', '1.8.0_31')] +dependencies = [('Java', '1.8.0_31')] moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2016a-32bitIDX.eb b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2016a-32bitIDX.eb new file mode 100644 index 0000000000000000000000000000000000000000..b31636893425175c0626e9d5f71146301336ef8c --- /dev/null +++ b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2016a-32bitIDX.eb @@ -0,0 +1,23 @@ +name = 'METIS' +version = '5.1.0' +versionsuffix = '-32bitIDX' + +homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/metis/overview' +description = """METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, + and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the + multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.""" + +toolchain = {'name': 'foss', 'version': '2016a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD', +] + +builddependencies = [('CMake', '3.4.3')] + +configopts = ['', 'shared=1'] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2016a.eb b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..2b65f31212cfadb1691d0eb8d75c4f6fd63de460 --- /dev/null +++ b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-foss-2016a.eb @@ -0,0 +1,22 @@ +name = 'METIS' +version = '5.1.0' + +homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/metis/overview' +description = """METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, + and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the + multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.""" + +toolchain = {'name': 'foss', 'version': '2016a'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/OLD', +] + +builddependencies = [('CMake', '3.4.3')] + +configopts = ['', 'shared=1'] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-gimkl-2.11.5-32bitIDX.eb b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-gimkl-2.11.5-32bitIDX.eb index 0d5b02189a2aa4812577b986995ddeced3a5dbea..7ab7bcbfae4962b6107e77e8e0ed7e6d3b2d20e3 100644 --- a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-gimkl-2.11.5-32bitIDX.eb +++ b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-gimkl-2.11.5-32bitIDX.eb @@ -1,6 +1,6 @@ name = 'METIS' version = '5.1.0' -#default 32-bit IDTYPEWIDTH, no patch used +# default 32-bit IDTYPEWIDTH, no patch used versionsuffix = '-32bitIDX' homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/metis/overview' diff --git a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2015a-32bitIDX.eb b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2015a-32bitIDX.eb index d937f515a841702f0a67dbc1a80dbd8d274b52f9..b404314c3ee7bfdb11c21ddd21d2a79d198c81e6 100644 --- a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2015a-32bitIDX.eb +++ b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2015a-32bitIDX.eb @@ -1,6 +1,6 @@ name = 'METIS' version = '5.1.0' -#default 32-bit IDTYPEWIDTH, no patch used +# default 32-bit IDTYPEWIDTH, no patch used versionsuffix = '-32bitIDX' homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/metis/overview' diff --git a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2015b-32bitIDX.eb b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2015b-32bitIDX.eb index c9b8dd3d53f325462d8b358044c6727ef2a2de7d..9810c2e1f284928342e531e2290f39e25e0b8e15 100644 --- a/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2015b-32bitIDX.eb +++ b/easybuild/easyconfigs/m/METIS/METIS-5.1.0-intel-2015b-32bitIDX.eb @@ -1,6 +1,6 @@ name = 'METIS' version = '5.1.0' -#default 32-bit IDTYPEWIDTH, no patch used +# default 32-bit IDTYPEWIDTH, no patch used versionsuffix = '-32bitIDX' homepage = 'http://glaros.dtc.umn.edu/gkhome/metis/metis/overview' diff --git a/easybuild/easyconfigs/m/MIGRATE-N/MIGRATE-N-4.2.2a-intel-2015b.eb b/easybuild/easyconfigs/m/MIGRATE-N/MIGRATE-N-4.2.2a-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..ee0f39c51aab93208b6aa8efca7a1cccf58f616f --- /dev/null +++ b/easybuild/easyconfigs/m/MIGRATE-N/MIGRATE-N-4.2.2a-intel-2015b.eb @@ -0,0 +1,39 @@ +easyblock = "ConfigureMake" + +name = "MIGRATE-N" +version = "4.2.2a" + +homepage = 'http://popgen.sc.fsu.edu/Migrate/Migrate-n.html' +description = """Migrate estimates effective population sizes and past migration rates + between n population assuming a migration matrix model + with asymmetric migration tates and different subpopulation sizes.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [ + 'http://popgen.sc.fsu.edu/currentversions/', + 'http://popgen.sc.fsu.edu/oldversions/%(version_major)s.x/%(version_major_minor)s', + 'http://popgen.sc.fsu.edu/oldversions/', +] +sources = ['migrate-%(version)s.src.tar.gz'] + +patches = [ + 'migrate-%(version)s_icc.patch', + 'migrate-%(version)s_install.patch', +] + +dependencies = [ + ('zlib', '1.2.8'), +] + +configopts = '--enable-A4 "CC=$CC" STDCPLUS=-lstdc++ ' +prebuildopts = 'make mpis && make clean && ' + +start_dir = 'src' + +sanity_check_paths = { + 'files': ['bin/migrate-n', 'bin/migrate-n-mpi'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/MIGRATE-N/migrate-4.2.2a_icc.patch b/easybuild/easyconfigs/m/MIGRATE-N/migrate-4.2.2a_icc.patch new file mode 100644 index 0000000000000000000000000000000000000000..20da05a0e459797254800e2220dae66e436654b1 --- /dev/null +++ b/easybuild/easyconfigs/m/MIGRATE-N/migrate-4.2.2a_icc.patch @@ -0,0 +1,13 @@ +#icc does not find -lpthread, if -fast defined +#B. Hajgato January 18th, 2016 +--- src/configure.orig 2014-12-28 03:46:09.000000000 +0100 ++++ src/configure 2016-01-18 15:02:00.147089834 +0100 +@@ -3332,7 +3332,7 @@ + pgcc) CFLAGS="-B -fast "; + SYSTEM="gcc";; + # icc) CFLAGS=" -O3 -tpp7 -xKW -pad -ip "; +- icc) CFLAGS+=" -fast "; ++ icc) CFLAGS+=""; + SYSTEM="icc";; + cc) case "$host_vendor" in + ibm) CFLAGS="-O3 -Dinline='/*inline*/' -q cpluscmt -DIBM"; diff --git a/easybuild/easyconfigs/m/MIGRATE-N/migrate-4.2.2a_install.patch b/easybuild/easyconfigs/m/MIGRATE-N/migrate-4.2.2a_install.patch new file mode 100644 index 0000000000000000000000000000000000000000..97957ab44e0d8b4679fd3bbbbbef722071947ff5 --- /dev/null +++ b/easybuild/easyconfigs/m/MIGRATE-N/migrate-4.2.2a_install.patch @@ -0,0 +1,13 @@ +#Create parent directories during install +#B. Hajgato January 18th, 2016 +--- src/configure.orig 2014-12-28 03:46:09.000000000 +0100 ++++ src/configure 2016-01-18 14:57:26.331047715 +0100 +@@ -3411,7 +3411,7 @@ + test -s conftest.dir/conftest.one && + test -s conftest.dir/conftest.two + then +- ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c" ++ ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c -D" + break 3 + fi + fi diff --git a/easybuild/easyconfigs/m/MLC/MLC-3.0.eb b/easybuild/easyconfigs/m/MLC/MLC-3.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..6f9d7320eaedd0df1953c035ef2cad3fd0f1d450 --- /dev/null +++ b/easybuild/easyconfigs/m/MLC/MLC-3.0.eb @@ -0,0 +1,23 @@ +easyblock = 'Tarball' + +name = 'MLC' +version = '3.0' + +homepage = 'https://software.intel.com/en-us/articles/intelr-memory-latency-checker' +description = """Intel Memory Latency Checker (Intel MLC) is a tool used to measure memory latencies and b/w, + and how they change with increasing load on the system.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download requires agreeing to license +# https://software.intel.com/en-us/articles/intelr-memory-latency-checker#download +sources = ['mlcv3.0.tgz'] + +sanity_check_paths = { + 'files': ['Linux/mlc', 'Linux/mlc_avx512', 'mlc_license.txt', 'readme.pdf'], + 'dirs': [], +} + +modextrapaths = {'PATH': 'Linux'} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/MMSEQ/MMSEQ-1.0.8-linux64-static.eb b/easybuild/easyconfigs/m/MMSEQ/MMSEQ-1.0.8-linux64-static.eb index e59bc4367084df74c0cf8d2f9ba8cb3c2eb99e3f..9077537b1d06cf800724f603dea02c31f42bd2ae 100644 --- a/easybuild/easyconfigs/m/MMSEQ/MMSEQ-1.0.8-linux64-static.eb +++ b/easybuild/easyconfigs/m/MMSEQ/MMSEQ-1.0.8-linux64-static.eb @@ -19,7 +19,7 @@ source_urls = ['https://github.com/eturro/mmseq/archive/'] sources = ['%(version)s.tar.gz'] sanity_check_paths = { - 'files': ["bin/mmseq-linux", "bin/bam2hits-linux", "bin/extract_transcripts-linux" ], + 'files': ["bin/mmseq-linux", "bin/bam2hits-linux", "bin/extract_transcripts-linux"], 'dirs': [] } diff --git a/easybuild/easyconfigs/m/MPC/MPC-1.0.2-foss-2015a.eb b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-foss-2015a.eb index d5449c24a44d8951e22dbf6840ec3f18e43de7c8..b3adacecd6dde36107d5ba0bece527d01bc7500d 100644 --- a/easybuild/easyconfigs/m/MPC/MPC-1.0.2-foss-2015a.eb +++ b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-foss-2015a.eb @@ -25,7 +25,7 @@ dependencies = [ runtest = 'check' sanity_check_paths = { - 'files': ['lib/libmpc.so', 'include/mpc.h'], + 'files': ['lib/libmpc.%s' % SHLIB_EXT, 'include/mpc.h'], 'dirs': [], } diff --git a/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb index 2efb366e000846d650b0639d4800be3354f82048..191f33c7254a3f0401483f2e6de13a1ed60a9b50 100644 --- a/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb +++ b/easybuild/easyconfigs/m/MPC/MPC-1.0.2-intel-2015a.eb @@ -23,8 +23,8 @@ dependencies = [('GMP', '5.1.3'), runtest = 'check' sanity_check_paths = { - 'files': ['lib/libmpc.so', 'include/mpc.h'], + 'files': ['lib/libmpc.%s' % SHLIB_EXT, 'include/mpc.h'], 'dirs': [] - } +} moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-foss-2015a-GMP-6.0.0a.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-foss-2015a-GMP-6.0.0a.eb index c0d8ea5a4855626565738cd1a3b91cd3781f4c53..d500bd8bd384511f0ca8b67aeefad84aefacc448 100644 --- a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-foss-2015a-GMP-6.0.0a.eb +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-foss-2015a-GMP-6.0.0a.eb @@ -14,11 +14,11 @@ sources = [SOURCELOWER_TAR_BZ2] patches = ['MPFR_ictce_remove-deprecated-mp.patch'] -gmp='GMP' -gmpver='6.0.0a' -versionsuffix='-%s-%s' % (gmp,gmpver) +gmp = 'GMP' +gmpver = '6.0.0a' +versionsuffix = '-%s-%s' % (gmp, gmpver) -#GMP does not compile correctly with ICC on Haswell architecture +# GMP does not compile correctly with ICC on Haswell architecture dependencies = [(gmp, gmpver, '', ('GCC', '4.9.2'))] runtest = 'check' diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-intel-2015a-GMP-6.0.0a.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-intel-2015a-GMP-6.0.0a.eb index 4afd6ab5dcbbf3c162902a2aebe47808f8973563..ed339c9c95836b906c3c22d31475bd0f6f9dc532 100644 --- a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-intel-2015a-GMP-6.0.0a.eb +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.2-intel-2015a-GMP-6.0.0a.eb @@ -14,11 +14,11 @@ sources = [SOURCELOWER_TAR_BZ2] patches = ['MPFR_ictce_remove-deprecated-mp.patch'] -gmp='GMP' -gmpver='6.0.0a' -versionsuffix='-%s-%s' % (gmp,gmpver) +gmp = 'GMP' +gmpver = '6.0.0a' +versionsuffix = '-%s-%s' % (gmp, gmpver) -#GMP does not compile correctly with ICC on Haswell architecture +# GMP does not compile correctly with ICC on Haswell architecture dependencies = [(gmp, gmpver, '', ('GCC', '4.9.2'))] runtest = 'check' diff --git a/easybuild/easyconfigs/m/MPFR/MPFR-3.1.3-intel-2015b-GMP-6.1.0.eb b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.3-intel-2015b-GMP-6.1.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..dc0a419868e5d0cd95185fbe7583b6fd3d11260e --- /dev/null +++ b/easybuild/easyconfigs/m/MPFR/MPFR-3.1.3-intel-2015b-GMP-6.1.0.eb @@ -0,0 +1,29 @@ +easyblock = 'ConfigureMake' + +name = 'MPFR' +version = '3.1.3' + +homepage = 'http://www.mpfr.org' +description = """The MPFR library is a C library for multiple-precision + floating-point computations with correct rounding.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://www.mpfr.org/mpfr-%(version)s/'] +sources = [SOURCELOWER_TAR_BZ2] + +patches = ['MPFR_ictce_remove-deprecated-mp.patch'] + +gmpver = '6.1.0' +versionsuffix = '-GMP-%s' % gmpver + +dependencies = [('GMP', gmpver)] + +runtest = 'check' + +sanity_check_paths = { + 'files': ['lib/libmpfr.%s' % SHLIB_EXT, 'include/mpfr.h'], + 'dirs': [] +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/m/MPICH/MPICH-3.0.4-GCC-4.8.1.eb b/easybuild/easyconfigs/m/MPICH/MPICH-3.0.4-GCC-4.8.1.eb index ffd62dfbf726924b004b15263d2d0e75b3ab74cf..f81230a16b43a7d071a58fac0cb37ae55a563fdb 100644 --- a/easybuild/easyconfigs/m/MPICH/MPICH-3.0.4-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/m/MPICH/MPICH-3.0.4-GCC-4.8.1.eb @@ -20,9 +20,9 @@ configopts = '--enable-shared' sanity_check_paths = { 'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', 'bin/mpiexec', 'bin/mpirun', - 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', 'lib/libfmpich.a', 'lib/libfmpich.so', - 'lib/libmpich.a', 'lib/libmpich.so', 'lib/libmpichcxx.a', 'lib/libmpichcxx.so', 'lib/libmpichf90.a', - 'lib/libmpichf90.so'], + 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', 'lib/libfmpich.a', 'lib/libfmpich.%s' % SHLIB_EXT, + 'lib/libmpich.a', 'lib/libmpich.%s' % SHLIB_EXT, 'lib/libmpichcxx.a', 'lib/libmpichcxx.%s' % SHLIB_EXT, 'lib/libmpichf90.a', + 'lib/libmpichf90.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-goolf-1.4.10-Java-1.7.0_75.eb b/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-goolf-1.4.10-Java-1.7.0_75.eb new file mode 100644 index 0000000000000000000000000000000000000000..25c03b4120b295fbdac1c9082800e66e3d9c72b5 --- /dev/null +++ b/easybuild/easyconfigs/m/MPJ-Express/MPJ-Express-0.44-goolf-1.4.10-Java-1.7.0_75.eb @@ -0,0 +1,48 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'Tarball' + +name = 'MPJ-Express' +version = '0.44' + +homepage = 'http://mpj-express.org/' +description = """MPJ Express is an open source Java message passing library that allows application + developers to write and execute parallel applications for multicore processors and compute clusters/clouds.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['https://sourceforge.net/projects/mpjexpress/files/releases/'] +sources = ['mpj-v%s.tar.gz' % (version.replace('.','_'))] + +java = 'Java' +javaver = '1.7.0_75' +versionsuffix = '-%s-%s' % (java, javaver) + +builddependencies = [('CMake', '2.8.12')] + +dependencies = [ + (java, javaver, '', True), +] + +# compile JNI wrapper library as described in docs +# http://mpj-express.org/docs/readme/README +postinstallcmds = ["mkdir %(installdir)s/src/mpjdev/natmpjdev/lib/build", + "cd %(installdir)s/src/mpjdev/natmpjdev/lib/build && cmake .. && make && make install DESTDIR=%(installdir)s",] + +modextrapaths = { + 'CLASSPATH': 'lib', +} + +modextravars = { + 'MPJ_HOME': '$root', # MPJ_HOME points to install directory +} + +sanity_check_paths = { + 'files': ['lib/libnativempjdev.so', 'bin/mpjrun.sh'], + 'dirs': [] +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/m/MTL4/MTL4-4.0.9555.eb b/easybuild/easyconfigs/m/MTL4/MTL4-4.0.9555.eb new file mode 100644 index 0000000000000000000000000000000000000000..980fa06b14f2bcabb8b9f5048ceb9a22b95152ab --- /dev/null +++ b/easybuild/easyconfigs/m/MTL4/MTL4-4.0.9555.eb @@ -0,0 +1,15 @@ +name = 'MTL4' +version = '4.0.9555' + +homepage = "http://www.simunova.com/mtl4" +description = """The Matrix Template Library 4 incorporates the most modern programming techniques + to provide an easy and intuitive interface to users while enabling optimal performance. The natural + mathematical notation in MTL4 empowers all engineers and scientists to implement their algorithms and + models in minimal time. All technical aspects are encapsulated in the library.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://www.simunova.com/downloads/mtl4'] +sources = ['MTL-all-%(version)s-Linux.tar.gz'] + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-goolf-1.4.10.eb index 0ce77f4dfaf03dbccc24a3295d2fda3e15ea621d..f41c1f775842229aba4abc9cd9b6ff9df9fc3d0e 100644 --- a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-goolf-1.4.10.eb @@ -3,7 +3,7 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'MUSCLE' version = '3.8.31' diff --git a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-ictce-5.5.0.eb b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-ictce-5.5.0.eb index ebd4dcac83259bf6172b758f7882dac229918cde..2998cc688ab6606bdeb9cc72f47f3f4fc4672455 100644 --- a/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/m/MUSCLE/MUSCLE-3.8.31-ictce-5.5.0.eb @@ -3,7 +3,7 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'MUSCLE' version = '3.8.31' diff --git a/easybuild/easyconfigs/m/MUST/MUST-1.2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/m/MUST/MUST-1.2.0-gompi-1.4.12-no-OFED.eb index 94a699dcb4702e6f5e61711361e1b4c9153324e9..cd0624726e820f2c189a61c5b5573a4d397de395 100644 --- a/easybuild/easyconfigs/m/MUST/MUST-1.2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/m/MUST/MUST-1.2.0-gompi-1.4.12-no-OFED.eb @@ -29,7 +29,7 @@ dependencies = [('GTI', '1.2.0')] builddependencies = [('CMake', '2.8.10.2')] -configopts = ' -DCMAKE_BUILD_TYPE=Release -DGTI_INSTALL_PREFIX=${EBROOTGTI}' +configopts = ' -DCMAKE_BUILD_TYPE=Release -DGTI_INSTALL_PREFIX=${EBROOTGTI}' sanity_check_paths = { 'files': ["bin/mustrun", "include/mustConfig.h"], diff --git a/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.7-GCC-4.6.3.eb b/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.7-GCC-4.6.3.eb index 53cdff914e5898132ed07d3f785ff492a4f9aff7..22a7f9f02ed34f620d4e9fb53d1c5c8ebdda4d20 100644 --- a/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.7-GCC-4.6.3.eb +++ b/easybuild/easyconfigs/m/MVAPICH2/MVAPICH2-1.7-GCC-4.6.3.eb @@ -13,12 +13,12 @@ source_urls = ['http://mvapich.cse.ohio-state.edu/download/mvapich2'] builddependencies = [('Bison', '2.5')] -rdma_type = "gen2" # 'gen2' or 'udapl' +rdma_type = "gen2" # 'gen2' or 'udapl' -## enable building of MPE routines +# enable building of MPE routines withmpe = True -## parallel build tends to fail +# parallel build tends to fail parallel = 1 moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/m/MariaDB/MariaDB-10.0.21-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/m/MariaDB/MariaDB-10.0.21-GNU-4.9.3-2.25.eb index c56c34addfc7ef62f532258a699ae28a0d99b8fd..8d842256191e5c6e1870a6e4a968eb8565a4d7ae 100644 --- a/easybuild/easyconfigs/m/MariaDB/MariaDB-10.0.21-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/m/MariaDB/MariaDB-10.0.21-GNU-4.9.3-2.25.eb @@ -6,14 +6,14 @@ version = '10.0.21' homepage = 'https://mariadb.org/' description = """MariaDB An enhanced, drop-in replacement for MySQL.""" -toolchain = {'name': 'GNU' , 'version': '4.9.3-2.25'} +toolchain = {'name': 'GNU', 'version': '4.9.3-2.25'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['https://downloads.mariadb.org/f/mariadb-10.0.21/source/'] dependencies = [ ('zlib', '1.2.8'), - ('ncurses' , '5.9'), + ('ncurses', '5.9'), ('libedit', '20150325'), ('libxml2', '2.9.2'), ] @@ -31,7 +31,7 @@ configopts = "-DCURSES_LIBRARY=$EBROOTNCURSES/lib/libncurses.so -DCURSES_INCLUDE configopts += " -DCMAKE_SHARED_LINKER_FLAGS='-fuse-ld=bfd' " sanity_check_paths = { - 'files': ['bin/mysql', 'bin/mysqld_safe', 'lib/libmysqlclient.so', 'scripts/mysql_install_db'], + 'files': ['bin/mysql', 'bin/mysqld_safe', 'lib/libmysqlclient.%s' % SHLIB_EXT, 'scripts/mysql_install_db'], 'dirs': ['include', 'share'], } diff --git a/easybuild/easyconfigs/m/MariaDB/MariaDB-5.5.29-ictce-4.1.13.eb b/easybuild/easyconfigs/m/MariaDB/MariaDB-5.5.29-ictce-4.1.13.eb index 63213cd9a5df2cb3a129482a60bb7525e6e40188..9e7b79069729904c1fc68cb1ea47d47600897f45 100644 --- a/easybuild/easyconfigs/m/MariaDB/MariaDB-5.5.29-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/MariaDB/MariaDB-5.5.29-ictce-4.1.13.eb @@ -6,7 +6,7 @@ version = '5.5.29' homepage = 'https://mariadb.org/' description = """MariaDB An enhanced, drop-in replacement for MySQL.""" -toolchain = {'name': 'ictce' , 'version': '4.1.13'} +toolchain = {'name': 'ictce', 'version': '4.1.13'} sources = [SOURCELOWER_TAR_GZ] @@ -14,7 +14,7 @@ sources = [SOURCELOWER_TAR_GZ] patches = ['define_unreachable_builtin.patch'] dependencies = [ - ('ncurses' , '5.9'), + ('ncurses', '5.9'), ('libreadline', '6.2'), ] @@ -24,7 +24,7 @@ configopts = "-DCURSES_LIBRARY=$EBROOTNCURSES/lib/libncurses.so -DCURSES_INCLUDE buildopts = "VERBOSE=1" sanity_check_paths = { - 'files': ['bin/mysql', 'bin/mysqld_safe', 'lib/libmysqlclient.so', 'scripts/mysql_install_db'], + 'files': ['bin/mysql', 'bin/mysqld_safe', 'lib/libmysqlclient.%s' % SHLIB_EXT, 'scripts/mysql_install_db'], 'dirs': ['include', 'share'], } diff --git a/easybuild/easyconfigs/m/Mercurial/Mercurial-2.3.2-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/m/Mercurial/Mercurial-2.3.2-ictce-5.3.0-Python-2.7.3.eb index 791d375531e0e1c5931fff08e0d5c9903478969e..f2baa1d123df9bd6bd71250e39c6f388cfab5ce4 100644 --- a/easybuild/easyconfigs/m/Mercurial/Mercurial-2.3.2-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/Mercurial/Mercurial-2.3.2-ictce-5.3.0-Python-2.7.3.eb @@ -22,8 +22,8 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [(python, pythonversion)] sanity_check_paths = { - 'files': ['bin/hg'], - 'dirs': ['lib/python%s/site-packages/mercurial' % pythonshortversion] - } + 'files': ['bin/hg'], + 'dirs': ['lib/python%s/site-packages/mercurial' % pythonshortversion] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-10.4.5-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/m/Mesa/Mesa-10.4.5-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000000000000000000000000000000000..2c72b2e6f54a87a865024750b1dcc884f03c6760 --- /dev/null +++ b/easybuild/easyconfigs/m/Mesa/Mesa-10.4.5-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,75 @@ +easyblock = 'ConfigureMake' + +name = 'Mesa' +version = '10.4.5' + +homepage = 'http://www.mesa3d.org/' +description = """Mesa is an open-source implementation of the OpenGL specification - + a system for rendering interactive 3D graphics.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'optarch': True} + +sources = ['%(name)sLib-%(version)s.tar.gz'] +source_urls = [ + 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', + 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', +] + +patches = ['Mesa-%(version)s_sse4_1.patch'] + +pythonver = '2.7.9' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % ('Python', pythonver) + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.2'), + ('Automake', '1.15'), + ('makedepend', '1.0.5'), + ('kbproto', '1.0.6'), + ('xextproto', '7.3.0'), + ('xproto', '7.0.27'), + ('libtool', '2.4.5'), + ('pkg-config', '0.28'), + ('glproto', '1.4.17'), + ('M4', '1.4.17') +] + +dependencies = [ + ('Python', pythonver), + ('libxml2', '2.9.2', versionsuffix), + ('libdrm', '2.4.59'), + ('libX11', '1.6.3', versionsuffix), + ('libXext', '1.3.3'), + ('libXfixes', '5.0.1'), + ('libXdamage', '1.1.4'), + ('libXfont', '1.5.1'), + ('LLVM', '3.6.2', versionsuffix), + ('eudev', '3.0'), +] + +# Use the os provided libudev or the EB provided eudev +#osdependencies = ['libudev'] + +# GLU is not part anymore of Mesa package! +configopts = " --disable-osmesa --disable-gallium-llvm --enable-glx --disable-dri --enable-xlib-glx" +configopts += " --disable-driglx-direct --with-gallium-drivers='' --disable-egl""" + +# package-config files for os dependencies are in an os specific place +#preconfigopts = ' PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' + +prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' + +sanity_check_paths = { + 'files': ['lib/libGL.%s' % SHLIB_EXT, 'include/GL/glext.h', 'include/GL/gl_mangle.h', + 'include/GL/glx.h', 'include/GL/osmesa.h', + 'include/GL/wglext.h', 'include/GL/gl.h', + 'include/GL/glxext.h', 'include/GL/glx_mangle.h', + 'include/GL/wmesa.h'], + 'dirs': [] +} + +maxparallel = 1 + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-10.4.5_sse4_1.patch b/easybuild/easyconfigs/m/Mesa/Mesa-10.4.5_sse4_1.patch new file mode 100644 index 0000000000000000000000000000000000000000..11d5aee63052b932b8f90d3565751d3f5c60b110 --- /dev/null +++ b/easybuild/easyconfigs/m/Mesa/Mesa-10.4.5_sse4_1.patch @@ -0,0 +1,20 @@ +#AMD Barcelona SSE4.1 capability wrongly determined. +#http://patchwork.freedesktop.org/patch/36869/ +# B. Hajgato March 4th 2015 +--- a/src/mesa/vbo/vbo_exec_array.c ++++ b/src/mesa/vbo/vbo_exec_array.c +@@ -121,12 +121,14 @@ vbo_get_minmax_index(struct gl_context *ctx, + } + } + else { ++#ifdef __SSE4_1__ + #if defined(USE_SSE41) + if (cpu_has_sse4_1) { + _mesa_uint_array_min_max(ui_indices, &min_ui, &max_ui, count); + } + else + #endif ++#endif + for (i = 0; i < count; i++) { + if (ui_indices[i] > max_ui) max_ui = ui_indices[i]; + if (ui_indices[i] < min_ui) min_ui = ui_indices[i]; diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-10.5.5-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/m/Mesa/Mesa-10.5.5-intel-2015a-Python-2.7.10.eb index 9f2977a63e37ca2723f34e76c3a86bc17cc7c6ac..1a69d474413cc5fbe35f76807094bff3b1d3f2bb 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-10.5.5-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-10.5.5-intel-2015a-Python-2.7.10.eb @@ -46,7 +46,7 @@ dependencies = [ ('eudev', '3.0'), ] -#Use the os provided libudev or the EB provided eudev +# Use the os provided libudev or the EB provided eudev #osdependencies = ['libudev'] # GLU is not part anymore of Mesa package! @@ -60,7 +60,7 @@ preconfigopts = ' libtoolize && ' prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' sanity_check_paths = { - 'files': ['lib/libGL.so', 'lib/libOSMesa.so', + 'files': ['lib/libGL.%s' % SHLIB_EXT, 'lib/libOSMesa.%s' % SHLIB_EXT, 'include/GL/glext.h', 'include/GL/gl_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', 'include/GL/wglext.h', 'include/GL/gl.h', diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-11.0.2-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/m/Mesa/Mesa-11.0.2-intel-2015b-Python-2.7.10.eb index aedf550c92b093cf20573031802527a329aa9706..9d960059a5d49958a1d30129e8f2a1b67cd6e9a9 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-11.0.2-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-11.0.2-intel-2015b-Python-2.7.10.eb @@ -45,7 +45,7 @@ dependencies = [ ('eudev', '3.1.2'), ] -#Use the os provided libudev or the EB provided eudev +# Use the os provided libudev or the EB provided eudev #osdependencies = ['libudev'] # GLU is not part anymore of Mesa package! @@ -59,8 +59,8 @@ preconfigopts = ' libtoolize && ' prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' sanity_check_paths = { - 'files': ['lib/libGL.so', 'lib/libOSMesa.so', - 'lib/libGLESv1_CM.so', 'lib/libGLESv2.so', + 'files': ['lib/libGL.%s' % SHLIB_EXT, 'lib/libOSMesa.%s' % SHLIB_EXT, + 'lib/libGLESv1_CM.%s' % SHLIB_EXT, 'lib/libGLESv2.%s' % SHLIB_EXT, 'include/GL/glext.h', 'include/GL/gl_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', 'include/GL/wglext.h', 'include/GL/gl.h', diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-11.0.8-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/m/Mesa/Mesa-11.0.8-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..73b355c719f6ba7fa57a048d8f2b2bbce713c0c0 --- /dev/null +++ b/easybuild/easyconfigs/m/Mesa/Mesa-11.0.8-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,75 @@ +easyblock = 'ConfigureMake' + +name = 'Mesa' +version = '11.0.8' + +homepage = 'http://www.mesa3d.org/' +description = """Mesa is an open-source implementation of the OpenGL specification - + a system for rendering interactive 3D graphics.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'ftp://ftp.freedesktop.org/pub/mesa/%(version)s', + 'ftp://ftp.freedesktop.org/pub/mesa/older-versions/%(version_major)s.x/%(version)s', +] + +pythonver = '2.7.11' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % ('Python', pythonver) + +builddependencies = [ + ('flex', '2.5.39'), + ('Bison', '3.0.4'), + ('Autotools', '20150215', '', ('GNU', '4.9.3-2.25')), + ('pkg-config', '0.29'), + ('glproto', '1.4.17'), + ('kbproto', '1.0.7'), + ('xextproto', '7.3.0'), + ('xproto', '7.0.28'), + ('makedepend', '1.0.5'), +] + +dependencies = [ + ('Python', pythonver), + ('libxml2', '2.9.3', versionsuffix), + ('libdrm', '2.4.66'), + ('libX11', '1.6.3', versionsuffix), + ('libXext', '1.3.3', versionsuffix), + ('libXfixes', '5.0.1'), + ('libXdamage', '1.1.4', versionsuffix), + ('libXfont', '1.5.1', versionsuffix), + ('LLVM', '3.7.1'), + ('eudev', '3.1.5'), +] + +# Use the os provided libudev or the EB provided eudev +#osdependencies = ['libudev'] + +# GLU is not part anymore of Mesa package! +configopts = " --disable-osmesa --enable-gallium-osmesa --enable-gallium-llvm --enable-glx --disable-dri --enable-xlib-glx" +configopts += " --disable-driglx-direct --with-gallium-drivers='swrast' --disable-egl --with-osmesa-bits=32 --enable-texture-float " + +# package-config files for os dependencies are in an os specific place +#preconfigopts = 'libtoolize && PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/share/pkgconfig" ' +preconfigopts = ' libtoolize && ' + +prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' + +sanity_check_paths = { + 'files': ['lib/libGL.so', 'lib/libOSMesa.so', + 'lib/libGLESv1_CM.so', 'lib/libGLESv2.so', + 'include/GL/glext.h', 'include/GL/gl_mangle.h', + 'include/GL/glx.h', 'include/GL/osmesa.h', + 'include/GL/wglext.h', 'include/GL/gl.h', + 'include/GL/glxext.h', 'include/GL/glx_mangle.h', + 'include/GLES/gl.h', 'include/GLES2/gl2.h', + 'include/GLES3/gl3.h'], + 'dirs': [] +} + +maxparallel = 1 + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 11985c41cfaf29544eed364418c0d9fe1590e1ce..0cd27019acea5b577497606174c6ecd68257c46d 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -21,22 +21,22 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % ('Python', pythonver) dependencies = [ - ('flex', '2.5.35'), - ('Bison', '2.5'), - ('makedepend', '1.0.4'), - ('Python', pythonver), - ('libxml2', '2.8.0', versionsuffix), - ('glproto', '1.4.16'), - ('libdrm', '2.4.27') - ] + ('flex', '2.5.35'), + ('Bison', '2.5'), + ('makedepend', '1.0.4'), + ('Python', pythonver), + ('libxml2', '2.8.0', versionsuffix), + ('glproto', '1.4.16'), + ('libdrm', '2.4.27') +] osdependencies = [ - 'libX11-devel', # Xlibs.h - 'xorg-x11-proto-devel', # X.h, glproto, xproto - 'libXdamage-devel', - 'libXext-devel', - 'libXfixes-devel', - ] + 'libX11-devel', # Xlibs.h + 'xorg-x11-proto-devel', # X.h, glproto, xproto + 'libXdamage-devel', + 'libXext-devel', + 'libXfixes-devel', +] configopts = " --disable-osmesa --enable-glu --disable-gallium-llvm --disable-gallium-gbm --enable-glx --with-driver=xlib" configopts += " --disable-driglx-direct --with-gallium-drivers='' --without-demos --disable-egl""" @@ -46,8 +46,8 @@ preconfigopts = ' PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/s prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' -sanity_check_paths = { - 'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h', +sanity_check_paths = { + 'files': ['lib/libGL.%s' % SHLIB_EXT, 'lib/libGLU.%s' % SHLIB_EXT, 'include/GL/glext.h', 'include/GL/gl_mangle.h', 'include/GL/glu_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', 'include/GL/wglext.h', 'include/GL/gl.h', 'include/GL/glu.h', 'include/GL/glxext.h', 'include/GL/glx_mangle.h', 'include/GL/vms_x_fix.h', 'include/GL/wmesa.h'], diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goolf-1.4.10-Python-2.7.3.eb index 0efe09a06f4260b85ce18d2bfa1943700fc3b012..a724cb0c527e939746427219619c8621ae5dd40f 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-goolf-1.4.10-Python-2.7.3.eb @@ -20,22 +20,22 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % ('Python', pythonver) dependencies = [ - ('flex', '2.5.35'), - ('Bison', '2.5'), - ('makedepend', '1.0.4'), - ('Python', pythonver), - ('libxml2', '2.8.0', versionsuffix), - ('glproto', '1.4.16'), - ('libdrm', '2.4.27') - ] + ('flex', '2.5.35'), + ('Bison', '2.5'), + ('makedepend', '1.0.4'), + ('Python', pythonver), + ('libxml2', '2.8.0', versionsuffix), + ('glproto', '1.4.16'), + ('libdrm', '2.4.27') +] osdependencies = [ - 'libX11-devel', # Xlibs.h - 'xorg-x11-proto-devel', # X.h, glproto, xproto - 'libXdamage-devel', - 'libXext-devel', - 'libXfixes-devel', - ] + 'libX11-devel', # Xlibs.h + 'xorg-x11-proto-devel', # X.h, glproto, xproto + 'libXdamage-devel', + 'libXext-devel', + 'libXfixes-devel', +] configopts = " --disable-osmesa --enable-glu --disable-gallium-llvm --disable-gallium-gbm --enable-glx --with-driver=xlib" configopts += " --disable-driglx-direct --with-gallium-drivers='' --without-demos --disable-egl""" @@ -45,8 +45,8 @@ preconfigopts = ' PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/s prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' -sanity_check_paths = { - 'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h', +sanity_check_paths = { + 'files': ['lib/libGL.%s' % SHLIB_EXT, 'lib/libGLU.%s' % SHLIB_EXT, 'include/GL/glext.h', 'include/GL/gl_mangle.h', 'include/GL/glu_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', 'include/GL/wglext.h', 'include/GL/gl.h', 'include/GL/glu.h', 'include/GL/glxext.h', 'include/GL/glx_mangle.h', 'include/GL/vms_x_fix.h', 'include/GL/wmesa.h'], diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.0.6-Python-2.7.3.eb index 7c14a3454506c7db7c8a5696d1c938e22b641eb5..70a2816d6bbce99963bebb64f7b6f6fcbbb397a3 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.0.6-Python-2.7.3.eb @@ -21,22 +21,22 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % ('Python', pythonver) dependencies = [ - ('flex', '2.5.35'), - ('Bison', '2.5'), - ('makedepend', '1.0.4'), - ('Python', pythonver), - ('libxml2', '2.8.0', versionsuffix), - ('glproto', '1.4.16'), - ('libdrm', '2.4.27') - ] + ('flex', '2.5.35'), + ('Bison', '2.5'), + ('makedepend', '1.0.4'), + ('Python', pythonver), + ('libxml2', '2.8.0', versionsuffix), + ('glproto', '1.4.16'), + ('libdrm', '2.4.27') +] osdependencies = [ - 'libX11-devel', # Xlibs.h - 'xorg-x11-proto-devel', # X.h, glproto, xproto - 'libXdamage-devel', - 'libXext-devel', - 'libXfixes-devel', - ] + 'libX11-devel', # Xlibs.h + 'xorg-x11-proto-devel', # X.h, glproto, xproto + 'libXdamage-devel', + 'libXext-devel', + 'libXfixes-devel', +] configopts = " --disable-osmesa --enable-glu --disable-gallium-llvm --disable-gallium-gbm --enable-glx --with-driver=xlib" configopts += " --disable-driglx-direct --with-gallium-drivers='' --without-demos --disable-egl""" @@ -46,8 +46,8 @@ preconfigopts = ' PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/s prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' -sanity_check_paths = { - 'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h', +sanity_check_paths = { + 'files': ['lib/libGL.%s' % SHLIB_EXT, 'lib/libGLU.%s' % SHLIB_EXT, 'include/GL/glext.h', 'include/GL/gl_mangle.h', 'include/GL/glu_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', 'include/GL/wglext.h', 'include/GL/gl.h', 'include/GL/glu.h', 'include/GL/glxext.h', 'include/GL/glx_mangle.h', 'include/GL/vms_x_fix.h', 'include/GL/wmesa.h'], diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.1.13-Python-2.7.3.eb index 4f8581ed6aba38000872feb72845a40814548049..0371483898db2bed0ec76e011e2e544dde5de98a 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-4.1.13-Python-2.7.3.eb @@ -21,20 +21,20 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % ('Python', pythonver) dependencies = [ - ('flex', '2.5.35'), - ('Bison', '2.5'), - ('makedepend', '1.0.4'), - ('Python', pythonver), - ('libxml2', '2.8.0', versionsuffix), - ('glproto', '1.4.16'), - ('libdrm', '2.4.27') + ('flex', '2.5.35'), + ('Bison', '2.5'), + ('makedepend', '1.0.4'), + ('Python', pythonver), + ('libxml2', '2.8.0', versionsuffix), + ('glproto', '1.4.16'), + ('libdrm', '2.4.27') ] osdependencies = [ 'libX11-devel', # Xlibs.h 'xorg-x11-proto-devel', # X.h, glproto, xproto - 'libXdamage-devel', - 'libXext-devel', + 'libXdamage-devel', + 'libXext-devel', 'libXfixes-devel', ] @@ -46,8 +46,8 @@ preconfigopts = ' PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/s prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' -sanity_check_paths = { - 'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h', +sanity_check_paths = { + 'files': ['lib/libGL.%s' % SHLIB_EXT, 'lib/libGLU.%s' % SHLIB_EXT, 'include/GL/glext.h', 'include/GL/gl_mangle.h', 'include/GL/glu_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', 'include/GL/wglext.h', 'include/GL/gl.h', 'include/GL/glu.h', 'include/GL/glxext.h', 'include/GL/glx_mangle.h', 'include/GL/vms_x_fix.h', 'include/GL/wmesa.h'], diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.3.0-Python-2.7.3.eb index fc5542e2ee708e03b793fa7e2262e6bbad09591d..7e87cc2bd48924e98d0f413b82bf452bf98241cd 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.3.0-Python-2.7.3.eb @@ -22,22 +22,22 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % ('Python', pythonver) dependencies = [ - ('flex', '2.5.35'), - ('Bison', '2.5'), - ('makedepend', '1.0.4'), - ('Python', pythonver), - ('libxml2', '2.8.0', versionsuffix), - ('glproto', '1.4.16'), - ('libdrm', '2.4.27') - ] + ('flex', '2.5.35'), + ('Bison', '2.5'), + ('makedepend', '1.0.4'), + ('Python', pythonver), + ('libxml2', '2.8.0', versionsuffix), + ('glproto', '1.4.16'), + ('libdrm', '2.4.27') +] osdependencies = [ - 'libX11-devel', # Xlibs.h - 'xorg-x11-proto-devel', # X.h, glproto, xproto - 'libXdamage-devel', - 'libXext-devel', - 'libXfixes-devel', - ] + 'libX11-devel', # Xlibs.h + 'xorg-x11-proto-devel', # X.h, glproto, xproto + 'libXdamage-devel', + 'libXext-devel', + 'libXfixes-devel', +] configopts = " --disable-osmesa --enable-glu --disable-gallium-llvm --disable-gallium-gbm --enable-glx --with-driver=xlib" configopts += " --disable-driglx-direct --with-gallium-drivers='' --without-demos --disable-egl""" @@ -47,8 +47,8 @@ preconfigopts = ' PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/s prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' -sanity_check_paths = { - 'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h', +sanity_check_paths = { + 'files': ['lib/libGL.%s' % SHLIB_EXT, 'lib/libGLU.%s' % SHLIB_EXT, 'include/GL/glext.h', 'include/GL/gl_mangle.h', 'include/GL/glu_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', 'include/GL/wglext.h', 'include/GL/gl.h', 'include/GL/glu.h', 'include/GL/glxext.h', 'include/GL/glx_mangle.h', 'include/GL/vms_x_fix.h', 'include/GL/wmesa.h'], diff --git a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.5.0-Python-2.7.6.eb index 3534cda3ad65c631c4f02782d87f97749fd500f6..9c7388d8246c45918ac2586d5b032bc8f0748761 100644 --- a/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.5.0-Python-2.7.6.eb +++ b/easybuild/easyconfigs/m/Mesa/Mesa-7.11.2-ictce-5.5.0-Python-2.7.6.eb @@ -48,7 +48,7 @@ preconfigopts = ' PKG_CONFIG_PATH="$PKG_CONFIG_PATH:/usr/lib64/pkgconfig/:/usr/s prebuildopts = 'CPATH="$EBROOTLIBDRM/include/libdrm" ' sanity_check_paths = { - 'files': ['lib/libGL.so', 'lib/libGLU.so', 'include/GL/glext.h', 'include/GL/gl_mangle.h', + 'files': ['lib/libGL.%s' % SHLIB_EXT, 'lib/libGLU.%s' % SHLIB_EXT, 'include/GL/glext.h', 'include/GL/gl_mangle.h', 'include/GL/glu_mangle.h', 'include/GL/glx.h', 'include/GL/osmesa.h', 'include/GL/wglext.h', 'include/GL/gl.h', 'include/GL/glu.h', 'include/GL/glxext.h', 'include/GL/glx_mangle.h', 'include/GL/vms_x_fix.h', diff --git a/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-goolf-1.4.10.eb index 852c1e30669303caac780f1e4734b9e7c027d706..3af2bae350a4dc33a92dca393c996a77b93c141d 100644 --- a/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-goolf-1.4.10.eb @@ -32,8 +32,8 @@ files_to_copy = ["bin", "docs"] sanity_check_paths = { 'files': ["bin/%s" % x for x in ["allelicmeth", "amrfinder", "amrtester", "bsrate", "dmr", - "duplicate-remover", "hmr", "hmr_plant", "lc_approx","levels", - "merge-bsrate", "merge-methcounts", "methcounts","methdiff", + "duplicate-remover", "hmr", "hmr_plant", "lc_approx", "levels", + "merge-bsrate", "merge-methcounts", "methcounts", "methdiff", "methstates", "pmd", "rmapbs", "rmapbs-pe", "roimethstat", "to-mr"]], 'dirs': ['docs'], } diff --git a/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-intel-2014b.eb b/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-intel-2014b.eb index 2c109b355724aba5d1974479ac18cb08ff24c15f..3f4fca59197932da6c8187cd4b81f5971f4e6e4f 100644 --- a/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-intel-2014b.eb +++ b/easybuild/easyconfigs/m/MethPipe/MethPipe-3.0.1-intel-2014b.eb @@ -32,8 +32,8 @@ files_to_copy = ["bin", "docs"] sanity_check_paths = { 'files': ["bin/%s" % x for x in ["allelicmeth", "amrfinder", "amrtester", "bsrate", "dmr", - "duplicate-remover", "hmr", "hmr_plant", "lc_approx","levels", - "merge-bsrate", "merge-methcounts", "methcounts","methdiff", + "duplicate-remover", "hmr", "hmr_plant", "lc_approx", "levels", + "merge-bsrate", "merge-methcounts", "methcounts", "methdiff", "methstates", "pmd", "rmapbs", "rmapbs-pe", "roimethstat", "to-mr"]], 'dirs': ['docs'], } diff --git a/easybuild/easyconfigs/m/Molden/Molden-5.0-ictce-4.1.13.eb b/easybuild/easyconfigs/m/Molden/Molden-5.0-ictce-4.1.13.eb index 33a900aecd00a29e5aacdb9a36f11e40319e160d..23f121832f681bb97b495e2f4e912ec0f9384778 100644 --- a/easybuild/easyconfigs/m/Molden/Molden-5.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/Molden/Molden-5.0-ictce-4.1.13.eb @@ -15,9 +15,9 @@ source_urls = ['ftp://ftp.cmbi.ru.nl/pub/molgraph/molden'] buildopts = 'CC="$CC" FC="$F90" molden' -files_to_copy = [(['molden'],'bin'), 'CopyRight', 'README', 'REGISTER'] +files_to_copy = [(['molden'], 'bin'), 'CopyRight', 'README', 'REGISTER'] -sanity_check_paths={ +sanity_check_paths = { 'files': ['bin/molden', 'README', 'REGISTER'], 'dirs': [], } diff --git a/easybuild/easyconfigs/m/Molpro/Molpro-2012.1.27-intel-2015a.eb b/easybuild/easyconfigs/m/Molpro/Molpro-2012.1.27-intel-2015a.eb index bfa90c0102678c6848c8e75e748d21d5471dd1b9..519d0887cc6bcde316957c81c2ad13afebd29555 100644 --- a/easybuild/easyconfigs/m/Molpro/Molpro-2012.1.27-intel-2015a.eb +++ b/easybuild/easyconfigs/m/Molpro/Molpro-2012.1.27-intel-2015a.eb @@ -1,7 +1,7 @@ name = 'Molpro' version = '2012.1.27' -homepage = 'https://molpro.net' +homepage = 'https://www.molpro.net' description = """Molpro is a complete system of ab initio programs for molecular electronic structure calculations.""" toolchain = {'name': 'intel', 'version': '2015a'} diff --git a/easybuild/easyconfigs/m/Molpro/Molpro-mpp-2010.1.23.Linux_x86_64.eb b/easybuild/easyconfigs/m/Molpro/Molpro-mpp-2010.1.23.Linux_x86_64.eb new file mode 100644 index 0000000000000000000000000000000000000000..25842fde1cbdab04660df875ce9b9ebaefc805d7 --- /dev/null +++ b/easybuild/easyconfigs/m/Molpro/Molpro-mpp-2010.1.23.Linux_x86_64.eb @@ -0,0 +1,21 @@ +name = 'Molpro' +versionprefix = 'mpp-' +version = '2010.1.23' +versionsuffix = '.Linux_x86_64' + +homepage = 'https://www.molpro.net' +description = """Molpro is a complete system of ab initio programs for molecular electronic structure calculations.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# no source URL available, requires registration to download +sources = ['%(namelower)s-%(versionprefix)s%(version)s%(versionsuffix)s.sh'] +patches = ['%(name)s-%(versionprefix)s%(version)s%(versionsuffix)s.patch'] +precompiled_binaries = True + +# license file - uncomment if a licence file is supplied by your site and +# is valid for all users - the value of license_file may have to be changed +#import os +#license_file = os.path.join(os.getenv('HOME'), 'licenses', name, 'license.lic') + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/m/Molpro/Molpro-mpp-2010.1.23.Linux_x86_64.patch b/easybuild/easyconfigs/m/Molpro/Molpro-mpp-2010.1.23.Linux_x86_64.patch new file mode 100644 index 0000000000000000000000000000000000000000..05094b69467c67a6926cdd5dac0893cb61a7e975 --- /dev/null +++ b/easybuild/easyconfigs/m/Molpro/Molpro-mpp-2010.1.23.Linux_x86_64.patch @@ -0,0 +1,18 @@ +be verbose about not having a license token available +author: Benjamin Roberts (NeSI) +--- molpro-mpp-2010.1.23.Linux_x86_64.sh 2015-09-02 12:57:08.239724674 +1200 ++++ molpro-mpp-2010.1.23.Linux_x86_64.sh 2015-09-02 13:01:18.998587159 +1200 +@@ -156,7 +156,12 @@ + eval ${download} "https://www.molpro.net/licensee/token" 1>/dev/null 2>&1 || rm -f ${INSTLIB}/.token + fi + +-if [ -f ${INSTLIB}/.token ] ; then ++if [ ! -f ${INSTLIB}/.token ] ; then ++ echo "" ++ echo "Licence token could not be installed successfully." ++ echo "A licence token must be provided whenever running Molpro." ++ exit 0 ++else + chmod 0644 ${INSTLIB}/.token + echo + echo Token sucessfully downloaded and installed diff --git a/easybuild/easyconfigs/m/Molpro/Molpro-mpp-2015.1.0.linux_x86_64_intel.eb b/easybuild/easyconfigs/m/Molpro/Molpro-mpp-2015.1.0.linux_x86_64_intel.eb new file mode 100644 index 0000000000000000000000000000000000000000..3d1681fc2e6200a3d33c6255254a2f99a1efb8f0 --- /dev/null +++ b/easybuild/easyconfigs/m/Molpro/Molpro-mpp-2015.1.0.linux_x86_64_intel.eb @@ -0,0 +1,21 @@ +name = 'Molpro' +versionprefix = 'mpp-' +version = '2015.1.0' +versionsuffix = '.linux_x86_64_intel' + +homepage = 'https://www.molpro.net' +description = """Molpro is a complete system of ab initio programs for molecular electronic structure calculations.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# no source URL available, requires registration to download +sources = ['%(namelower)s-%(versionprefix)s%(version)s%(versionsuffix)s.sh'] + +precompiled_binaries = True + +# license file - uncomment if a licence file is supplied by your site and +# is valid for all users - the value of license_file may have to be changed +#import os +#license_file = os.path.join(os.getenv('HOME'), 'licenses', name, 'license.lic') + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/m/MotEvo/MotEvo-1.02-goolf-1.4.10.eb b/easybuild/easyconfigs/m/MotEvo/MotEvo-1.02-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..5da93a4bfe9cb6be9a931c193907082b2d20e9b9 --- /dev/null +++ b/easybuild/easyconfigs/m/MotEvo/MotEvo-1.02-goolf-1.4.10.eb @@ -0,0 +1,32 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'MotEvo' +version = '1.02' + +homepage = 'http://swissregulon.unibas.ch/fcgi/sr/software' +description = """ MotEvo: a integrated suite of Bayesian probabilistic methods for + the prediction of TFBSs and inference of regulatory motifs from multiple alignments + of phylogenetically related DNA sequences """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://www.swissregulon.unibas.ch/software/motevo/'] +sources = ['%(namelower)s_v%(version)s.tar.gz'] + +start_dir = "source" + +parallel = 1 + +files_to_copy = ["../*"] + +sanity_check_paths = { + 'files': ["bin/motevo", "bin/runUFE"], + 'dirs': ["weight_matrices", "trees", "weight_matrices"], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/Mothur/Mothur-1.36.1-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/m/Mothur/Mothur-1.36.1-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..d04ad20cc6d9da1aee719b997b9368c5ced988bc --- /dev/null +++ b/easybuild/easyconfigs/m/Mothur/Mothur-1.36.1-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,29 @@ +name = 'Mothur' +version = '1.36.1' +python = 'Python' +pyver = '2.7.10' +versionsuffix = '-%s-%s' % (python, pyver) + +homepage = 'http://www.mothur.org/' +description = """Mothur is a single piece of open-source, expandable software + to fill the bioinformatics needs of the microbial ecology community.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'usempi': True} + +source_urls = ['https://github.com/mothur/mothur/archive/'] +sources = ['v%(version)s.tar.gz'] + +patches = ['%(name)s-%(version)s_makefile-hardcoding.patch'] + +dependencies = [ + (python, pyver), + ('Boost', '1.59.0', versionsuffix), + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('bzip2', '1.0.6'), + ('gzip', '1.6'), + ('zlib', '1.2.8'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/m/Mothur/Mothur-1.36.1_makefile-hardcoding.patch b/easybuild/easyconfigs/m/Mothur/Mothur-1.36.1_makefile-hardcoding.patch new file mode 100644 index 0000000000000000000000000000000000000000..83e04782d640c7e5d24f17e1d8561bbc462acda6 --- /dev/null +++ b/easybuild/easyconfigs/m/Mothur/Mothur-1.36.1_makefile-hardcoding.patch @@ -0,0 +1,68 @@ +--- makefile.org 2015-07-27 16:18:26.000000000 +0200 ++++ makefile 2016-01-18 13:37:34.624809549 +0100 +@@ -18,12 +18,12 @@ + VERSION = "\"1.36.1\"" + + # Optimize to level 3: +-CXXFLAGS += -O3 ++#CXXFLAGS += -O3 + + + ifeq ($(strip $(64BIT_VERSION)),yes) + #if you are a mac user use the following line +- TARGET_ARCH += -arch x86_64 ++ #TARGET_ARCH += -arch x86_64 + + #if you using cygwin to build Windows the following line + #CXX = x86_64-w64-mingw32-g++ +@@ -58,20 +58,20 @@ + + + ifeq ($(strip $(USEMPI)),yes) +- CXX = mpic++ ++ CXX = $(MPICXX) + CXXFLAGS += -DUSE_MPI + endif + + #The boost libraries allow you to read gz files. + ifeq ($(strip $(USEBOOST)),yes) +- BOOST_INCLUDE_DIR="/usr/local/include" +- BOOST_LIBRARY_DIR="/usr/local/lib" ++ BOOST_INCLUDE_DIR=$(EBROOTBOOST)/include ++ BOOST_LIBRARY_DIR=$(EBROOTBOOST)/lib + + CXXFLAGS += -DUSE_BOOST + + LIBS += \ + ${BOOST_LIBRARY_DIR}/libboost_iostreams.a \ +- ${BOOST_LIBRARY_DIR}/zlib.a ++ ${EBROOTZLIB}/lib/libz.a + + #if linux or windows then ${BOOST_LIBRARY_DIR}/libz.a + endif +--- source/uchime_src/mk.orig 2015-07-27 16:18:26.000000000 +0200 ++++ source/uchime_src/mk 2016-01-18 14:07:56.834224506 +0100 +@@ -1,4 +1,4 @@ +-#!/bin/bash ++#!/bin/bash -v + CPPNames='addtargets2 alignchime alignchimel alnparams alpha alpha2 fractid getparents globalalign2 make3way mx myutils path searchchime seqdb setnucmx sfasta tracebackbit uchime_main usort viterbifast writechhit' + ObjNames='addtargets2.o alignchime.o alignchimel.o alnparams.o alpha.o alpha2.o fractid.o getparents.o globalalign2.o make3way.o mx.o myutils.o path.o searchchime.o seqdb.o setnucmx.o sfasta.o tracebackbit.o uchime_main.o usort.o viterbifast.o writechhit.o' + +@@ -7,7 +7,7 @@ + for CPPName in $CPPNames + do + echo $CPPName >> /dev/tty +- g++ $ENV_GCC_OPTS -c -O3 -msse2 -mfpmath=sse -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 $CPPName.cpp -o $CPPName.o >> mk.stdout 2>> tmp.stderr ++ $CXX $ENV_GCC_OPTS -c $CXXFLAGS -D_FILE_OFFSET_BITS=64 -DNDEBUG=1 -DUCHIMES=1 $CPPName.cpp -o $CPPName.o >> mk.stdout 2>> tmp.stderr + cat tmp.stderr + cat tmp.stderr >> mk.stderr + rm -f tmp.stderr +@@ -17,7 +17,7 @@ + if [ `uname -s` == Linux ] ; then + LINK_OPTS=-static + fi +-g++ $LINK_OPTS $ENV_LINK_OPTS -g -o uchime $ObjNames >> mk.stdout 2>> tmp.stderr ++$CXX $CXXFLAGS $ENV_LINK_OPTS -o uchime $ObjNames >> mk.stdout 2>> tmp.stderr + cat tmp.stderr + cat tmp.stderr >> mk.stderr + rm -f tmp.stderr diff --git a/easybuild/easyconfigs/m/MultiNest/MultiNest-3.10-intel-2015b.eb b/easybuild/easyconfigs/m/MultiNest/MultiNest-3.10-intel-2015b.eb index fc01056a67ea8d53a9be47d4765a68956f33b228..13350aae1fc1cd948beba3ab8d10cd26e51a504d 100644 --- a/easybuild/easyconfigs/m/MultiNest/MultiNest-3.10-intel-2015b.eb +++ b/easybuild/easyconfigs/m/MultiNest/MultiNest-3.10-intel-2015b.eb @@ -18,7 +18,8 @@ builddependencies = [('CMake', '3.4.0')] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['ackley', 'eggboxC', 'eggboxC++', 'gaussian', 'gauss_shell', 'himmelblau', 'obj_detect', 'rosenbrock']] + - ['lib/lib%s' % x for x in ['multinest.a', 'multinest_mpi.a', 'multinest_mpi.so', 'multinest.so']] + + ['lib/lib%s' % x for x in ['multinest.a', 'multinest_mpi.a', 'multinest_mpi.%s' % SHLIB_EXT, + 'multinest.%s' % SHLIB_EXT]] + ['include/multinest.h'], 'dirs': ['modules'], } diff --git a/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb b/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb index b14d94df8435a712ab1e8d6428f419c146846ba9..50dda691db6841b4bb7054dc97ca780b00c2b499 100644 --- a/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb +++ b/easybuild/easyconfigs/m/MySQL/MySQL-5.6.20-intel-2014b-clientonly.eb @@ -8,7 +8,7 @@ homepage = 'http://www.mysql.com/' description = """MySQL is (as of March 2014) the world's second most widely used open-source relational database management system (RDBMS).""" -#http://dev.mysql.com/get/Downloads/MySQL-5.6/mysql-5.6.20.tar.gz +# http://dev.mysql.com/get/Downloads/MySQL-5.6/mysql-5.6.20.tar.gz source_urls = ['http://dev.mysql.com/get/Downloads/MySQL-%(version_major_minor)s/'] sources = [SOURCELOWER_TAR_GZ] @@ -20,7 +20,7 @@ dependencies = [ ('libevent', '2.0.21'), ('libreadline', '6.3'), ('zlib', '1.2.8'), -# ('OpenSSL', '1.0.1i'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1i'), # OS dependency should be preferred for security reasons ] builddependencies = [ diff --git a/easybuild/easyconfigs/m/MySQL/MySQL-5.6.26-GNU-4.9.3-2.25-clientonly.eb b/easybuild/easyconfigs/m/MySQL/MySQL-5.6.26-GNU-4.9.3-2.25-clientonly.eb index bae1276ac2d48d9a72e315d8d3c9d31a18d629be..6b59f1b4bfe0d8f6d4d415a3d3bcc8abd1ba39d7 100644 --- a/easybuild/easyconfigs/m/MySQL/MySQL-5.6.26-GNU-4.9.3-2.25-clientonly.eb +++ b/easybuild/easyconfigs/m/MySQL/MySQL-5.6.26-GNU-4.9.3-2.25-clientonly.eb @@ -18,7 +18,7 @@ dependencies = [ ('ncurses', '5.9'), ('libedit', '20150325'), ('zlib', '1.2.8'), -# ('OpenSSL', '1.0.1p'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1p'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/m/make/make-4.1-GCC-4.9.2.eb b/easybuild/easyconfigs/m/make/make-4.1-GCC-4.9.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..bff321b4b29d6cdc8897f6eec09d733c38c6281c --- /dev/null +++ b/easybuild/easyconfigs/m/make/make-4.1-GCC-4.9.2.eb @@ -0,0 +1,30 @@ +## +# This file is an EasyBuild recipy as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## +easyblock = 'ConfigureMake' + +name = 'make' +version = '4.1' + +homepage = 'http://www.gnu.org/software/make/make.html' +description = "GNU version of make utility" + +toolchain = {'name': 'GCC', 'version': '4.9.2'} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_BZ2] + +sanity_check_paths = { + 'files': ['bin/make'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goalf-1.1.0-no-OFED.eb index 10d8f0fdb3e78fb7c10d908182beaa6ec444ea30..3b30e0e1d583ff5b08e71cb17acf10bcdc5d2d29 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goalf-1.1.0-no-OFED.eb @@ -4,7 +4,7 @@ name = 'makedepend' version = '1.0.4' homepage = "http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html" -description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." +description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'optarch': True} @@ -12,7 +12,7 @@ toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/releases/individual/util'] -sanity_check_paths = { +sanity_check_paths = { 'files': ['bin/makedepend'], 'dirs': [], } diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goolf-1.4.10.eb index ff1abe689361c85bb092676c405858a18d97d57a..393090c9942465fc573f3c77f19386cceba59f9b 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-goolf-1.4.10.eb @@ -4,14 +4,14 @@ name = 'makedepend' version = '1.0.4' homepage = "http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html" -description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." +description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/releases/individual/util'] -sanity_check_paths = { +sanity_check_paths = { 'files': ['bin/makedepend'], 'dirs': [], } diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-3.2.2.u3.eb index 790eefcde4e2ee9a68c3062d8a78c35813d1e879..f5f634beae7e45f2fda1603aa578687c3954199e 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-3.2.2.u3.eb @@ -4,7 +4,7 @@ name = 'makedepend' version = '1.0.4' homepage = "http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html" -description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." +description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." toolchain = {'name': 'ictce', 'version': '3.2.2.u3'} toolchainopts = {'optarch': True} @@ -14,7 +14,7 @@ source_urls = ['http://xorg.freedesktop.org/releases/individual/util'] patches = ['makedepend_icc-sigaction.patch'] -sanity_check_paths = { +sanity_check_paths = { 'files': ['bin/makedepend'], 'dirs': [], } diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.0.6.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.0.6.eb index 94b2544e16ba273e54977ade6328541ffd6dde51..25ba8c0849b1304d6f38ad70b2d4c2e619a1642f 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.0.6.eb @@ -4,7 +4,7 @@ name = 'makedepend' version = '1.0.4' homepage = "http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html" -description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." +description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." toolchain = {'name': 'ictce', 'version': '4.0.6'} toolchainopts = {'optarch': True} @@ -12,7 +12,7 @@ toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/releases/individual/util'] -sanity_check_paths = { +sanity_check_paths = { 'files': ['bin/makedepend'], 'dirs': [], } diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.1.13.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.1.13.eb index c0f71c373d449bf4b96bb9e56b3f9a7e16785bcd..858f7c26082a0fd203c5c4aafed8b5e08f7d5ab7 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-4.1.13.eb @@ -4,7 +4,7 @@ name = 'makedepend' version = '1.0.4' homepage = "http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html" -description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." +description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'optarch': True} @@ -12,7 +12,7 @@ toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/releases/individual/util'] -sanity_check_paths = { +sanity_check_paths = { 'files': ['bin/makedepend'], 'dirs': [], } diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.3.0.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.3.0.eb index 39683b811c08f77b73d659e82050830131403f15..808282ac91451602ac3ae5ad2f42f803aacd53bb 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-ictce-5.3.0.eb @@ -4,7 +4,7 @@ name = 'makedepend' version = '1.0.4' homepage = "http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html" -description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." +description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." toolchain = {'name': 'ictce', 'version': '5.3.0'} @@ -13,7 +13,7 @@ toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/releases/individual/util'] -sanity_check_paths = { +sanity_check_paths = { 'files': ['bin/makedepend'], 'dirs': [], } diff --git a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-iqacml-3.7.3.eb b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-iqacml-3.7.3.eb index 34e982133e2bf19e8379fcf7d7dfcdf579d60c8e..07b6b524bfe9690d7d525e88c1fc69fbff41e8a0 100644 --- a/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/m/makedepend/makedepend-1.0.4-iqacml-3.7.3.eb @@ -4,7 +4,7 @@ name = 'makedepend' version = '1.0.4' homepage = "http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html" -description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." +description = "The makedepend package contains a C-preprocessor like utility to determine build-time dependencies." toolchain = {'name': 'iqacml', 'version': '3.7.3'} toolchainopts = {'optarch': True} @@ -14,7 +14,7 @@ source_urls = ['http://xorg.freedesktop.org/releases/individual/util'] patches = ['makedepend_icc-sigaction.patch'] -sanity_check_paths = { +sanity_check_paths = { 'files': ['bin/makedepend'], 'dirs': [], } diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.5.1-foss-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.5.1-foss-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..207a23ff90cc88c3d698210697d83a131f76922e --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.5.1-foss-2015b-Python-2.7.10.eb @@ -0,0 +1,45 @@ +easyblock = 'Bundle' + +name = 'matplotlib' +version = '1.5.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://matplotlib.org' +description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of + hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python + and ipython shell, web application servers, and six graphical user interface toolkits.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' +exts_filter = ('python -c "import %(ext_name)s"', '') + +dependencies = [ + ('Python', '2.7.10'), + ('freetype', '2.6.2'), + ('libpng', '1.6.21'), +] + +exts_list = [ + ('Cycler', '0.9.0', { + 'modulename': 'cycler', + 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], + 'source_tmpl': 'cycler-%(version)s.tar.gz', + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.5.1-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.5.1-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..1364208ceef9bfa8001984b63d643fca149b9c05 --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.5.1-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,45 @@ +easyblock = 'Bundle' + +name = 'matplotlib' +version = '1.5.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://matplotlib.org' +description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of + hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python + and ipython shell, web application servers, and six graphical user interface toolkits.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' +exts_filter = ('python -c "import %(ext_name)s"', '') + +dependencies = [ + ('Python', '2.7.11'), + ('freetype', '2.6.2'), + ('libpng', '1.6.21'), +] + +exts_list = [ + ('Cycler', '0.9.0', { + 'modulename': 'cycler', + 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], + 'source_tmpl': 'cycler-%(version)s.tar.gz', + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/matplotlib/matplotlib-1.5.1-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.5.1-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..c62d74a1eb01f6732ab4ebe6dbedf7e629366ba8 --- /dev/null +++ b/easybuild/easyconfigs/m/matplotlib/matplotlib-1.5.1-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,45 @@ +easyblock = 'Bundle' + +name = 'matplotlib' +version = '1.5.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://matplotlib.org' +description = """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of + hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python + and ipython shell, web application servers, and six graphical user interface toolkits.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' +exts_filter = ('python -c "import %(ext_name)s"', '') + +dependencies = [ + ('Python', '2.7.11'), + ('freetype', '2.6.2'), + ('libpng', '1.6.21'), +] + +exts_list = [ + ('Cycler', '0.9.0', { + 'modulename': 'cycler', + 'source_urls': ['https://pypi.python.org/packages/source/C/Cycler'], + 'source_tmpl': 'cycler-%(version)s.tar.gz', + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/m/matplotlib'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb index ecfb57dda393197be94a9a8ac44bdcce91c71511..a05d90692447fbb4fe82b088cb23adf5dac72871 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-goalf-1.1.0-no-OFED.eb @@ -24,8 +24,8 @@ source_urls = ['http://www.ibiblio.org/pub/Linux/utils/file/managers/mc/'] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sanity_check_paths = { - 'files': ['bin/mc'], - 'dirs': [] - } + 'files': ['bin/mc'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb index 438ec80d0eaa64eeceeef4b4f1e7e8afd2198f79..87c8b17b1f9538ff9c3d3455a63c24e5a064e732 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-goolf-1.4.10.eb @@ -23,8 +23,8 @@ source_urls = ['http://www.ibiblio.org/pub/Linux/utils/file/managers/mc/'] toolchain = {'name': 'goolf', 'version': '1.4.10'} sanity_check_paths = { - 'files': ['bin/mc'], - 'dirs': [] - } + 'files': ['bin/mc'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb index ec94a5a333d6b4b5a907933890d53a1630ee541e..9830f3790462fe93b701a833b28a4b8a2ec24c1e 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-4.0.6.eb @@ -24,8 +24,8 @@ source_urls = ['http://www.ibiblio.org/pub/Linux/utils/file/managers/mc/'] toolchain = {'version': '4.0.6', 'name': 'ictce'} sanity_check_paths = { - 'files': ['bin/mc'], - 'dirs': [] - } + 'files': ['bin/mc'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb index f390a24559e3255f27da41a2d0f098a3a9200817..7047839f2d2bd4b8556c360fd6881f9930640627 100644 --- a/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/mc/mc-4.6.1-ictce-5.3.0.eb @@ -25,8 +25,8 @@ source_urls = ['http://www.ibiblio.org/pub/Linux/utils/file/managers/mc/'] toolchain = {'name': 'ictce', 'version': '5.3.0'} sanity_check_paths = { - 'files': ['bin/mc'], - 'dirs': [] - } + 'files': ['bin/mc'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb index 6c2df30046b9baffb45d453fde3aecf1ef8d9ae3..13a13c28d8ea56de898bce183a0962ad4cac2ed4 100644 --- a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-goolf-1.4.10.eb @@ -25,9 +25,9 @@ parallel = 1 buildopts = ' CC="$CC"' files_to_copy = [ - (['mdtest'], 'bin'), - "README", - "COPYRIGHT", + (['mdtest'], 'bin'), + "README", + "COPYRIGHT", ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb index d5a5cb84d436991d52b80dd432426a30db5e1113..fdcf4609afe1d62a1d2a306310e13bb1fa6f3662 100644 --- a/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.7.1-ictce-6.2.5.eb @@ -25,9 +25,9 @@ parallel = 1 buildopts = ' CC="$CC"' files_to_copy = [ - (['mdtest'], 'bin'), - "README", - "COPYRIGHT", + (['mdtest'], 'bin'), + "README", + "COPYRIGHT", ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb index aaa351515085644ec98850874bf2693eff974854..6a4c7c8893d9232906b1adc9902f6541fd0f6847 100644 --- a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-goolf-1.4.10.eb @@ -25,11 +25,11 @@ parallel = 1 buildopts = ' CC="$CC"' files_to_copy = [ - (['mdtest'], 'bin'), - (['mdtest.1'], 'man/man1'), - "README", - "RELEASE_LOG", - "scripts" + (['mdtest'], 'bin'), + (['mdtest.1'], 'man/man1'), + "README", + "RELEASE_LOG", + "scripts" ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb index 28fb4bd0ad69071be90cb209ca4daebe2d2360a7..31e12db3cce2683bc08cbf925e9d8d29da3e82eb 100644 --- a/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/m/mdtest/mdtest-1.9.3-ictce-6.2.5.eb @@ -25,11 +25,11 @@ parallel = 1 buildopts = ' CC="$CC"' files_to_copy = [ - (['mdtest'], 'bin'), - (['mdtest.1'], 'man/man1'), - "README", - "RELEASE_LOG", - "scripts" + (['mdtest'], 'bin'), + (['mdtest.1'], 'man/man1'), + "README", + "RELEASE_LOG", + "scripts" ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 98f6b375dfec77f5e8f773681483a034c6e86d98..b4a81e41a35c4780e6310492b462d9024d36af55 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -9,12 +9,9 @@ the Python programming language, allowing any Python program to exploit multiple toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} -source_urls = [ - BITBUCKET_DOWNLOADS, - GOOGLECODE_SOURCE, -] +source_urls = [BITBUCKET_DOWNLOADS] sources = [SOURCE_TAR_GZ] - + python = 'Python' pyver = '2.7.3' versionsuffix = '-%s-%s' % (python, pyver) diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goolf-1.4.10-Python-2.7.3.eb index 58e1efec953d6fd93286aa4b10b8a37d7ecd387d..e5d94c2ee2c45647db67ce23b92f6c7d452933ca 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goolf-1.4.10-Python-2.7.3.eb @@ -9,12 +9,9 @@ the Python programming language, allowing any Python program to exploit multiple toolchain = {'name': 'goolf', 'version': '1.4.10'} -source_urls = [ - BITBUCKET_DOWNLOADS, - GOOGLECODE_SOURCE, -] +source_urls = [BITBUCKET_DOWNLOADS] sources = [SOURCE_TAR_GZ] - + python = 'Python' pyver = '2.7.3' versionsuffix = '-%s-%s' % (python, pyver) diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goolf-1.4.10-Python-3.2.3.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goolf-1.4.10-Python-3.2.3.eb index 8d1017dab1d5529822d9b1a8e68480c9d24dc6b3..4e871b0231ac5c063d62bb0c1d3fedc06e0ca56b 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goolf-1.4.10-Python-3.2.3.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-goolf-1.4.10-Python-3.2.3.eb @@ -10,12 +10,9 @@ language, allowing any Python program to exploit multiple processors.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} -source_urls = [ - BITBUCKET_DOWNLOADS, - GOOGLECODE_SOURCE, -] +source_urls = [BITBUCKET_DOWNLOADS] sources = [SOURCE_TAR_GZ] - + python = 'Python' pyver = '3.2.3' versionsuffix = '-%s-%s' % (python, pyver) diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-4.0.6-Python-2.7.3.eb index fff549de1f9e5125088caae9bd42a07e5552d25d..40a44908c44739c4d6d8d885fed8bd4fe318247c 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-4.0.6-Python-2.7.3.eb @@ -9,12 +9,9 @@ the Python programming language, allowing any Python program to exploit multiple toolchain = {'name': 'ictce', 'version': '4.0.6'} -source_urls = [ - BITBUCKET_DOWNLOADS, - GOOGLECODE_SOURCE, -] +source_urls = [BITBUCKET_DOWNLOADS] sources = [SOURCE_TAR_GZ] - + python = 'Python' pyver = '2.7.3' versionsuffix = '-%s-%s' % (python, pyver) diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-4.1.13-Python-2.7.3.eb index 9fe2a5f319af2b39d5a680874013722ab102c943..71702ea79c5136eec91621f74425cff8aaf5aa9d 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-4.1.13-Python-2.7.3.eb @@ -9,12 +9,9 @@ the Python programming language, allowing any Python program to exploit multiple toolchain = {'name': 'ictce', 'version': '4.1.13'} -source_urls = [ - BITBUCKET_DOWNLOADS, - GOOGLECODE_SOURCE, -] +source_urls = [BITBUCKET_DOWNLOADS] sources = [SOURCE_TAR_GZ] - + python = 'Python' pyver = '2.7.3' versionsuffix = '-%s-%s' % (python, pyver) diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-5.3.0-Python-2.7.3.eb index eaf599c8ab0e5c4731710f43b7e0e35ef4456665..14d09f706a14a8f9242096f91c331d1b956ad514 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-5.3.0-Python-2.7.3.eb @@ -9,12 +9,9 @@ description = """MPI for Python (mpi4py) provides bindings of the Message Passin toolchain = {'name': 'ictce', 'version': '5.3.0'} -source_urls = [ - BITBUCKET_DOWNLOADS, - GOOGLECODE_SOURCE, -] +source_urls = [BITBUCKET_DOWNLOADS] sources = [SOURCE_TAR_GZ] - + python = 'Python' pyver = '2.7.3' versionsuffix = '-%s-%s' % (python, pyver) diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-5.5.0-Python-2.7.5.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-5.5.0-Python-2.7.5.eb index 07635c8d39050512fdcc0a4c0c28c8a05624d81a..96628ba336dc2e2c1992ca321e3ff265fd250cb7 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-5.5.0-Python-2.7.5.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3-ictce-5.5.0-Python-2.7.5.eb @@ -9,10 +9,7 @@ description = """MPI for Python (mpi4py) provides bindings of the Message Passin toolchain = {'name': 'ictce', 'version': '5.5.0'} -source_urls = [ - BITBUCKET_DOWNLOADS, - GOOGLECODE_SOURCE, -] +source_urls = [BITBUCKET_DOWNLOADS] sources = [SOURCE_TAR_GZ] python = 'Python' diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.10-timed-pingpong.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.10-timed-pingpong.eb index 85752ecebfe047522b78b7f2d8e0bb7b0634e698..e8592db2a2b51cbe3b428d0014834baaff54956f 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.10-timed-pingpong.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.10-timed-pingpong.eb @@ -9,10 +9,7 @@ description = """MPI for Python (mpi4py) provides bindings of the Message Passin toolchain = {'name': 'intel', 'version': '2015b'} -source_urls = [ - BITBUCKET_DOWNLOADS, - GOOGLECODE_SOURCE, -] +source_urls = [BITBUCKET_DOWNLOADS] sources = [SOURCE_TAR_GZ] label = 'timed-pingpong' diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.10.eb index b6e7008371ab4e23683ad59e06ddb683e7fbbb35..9ee5130156a98b763ea9d9e0826b4a56b010546e 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.10.eb @@ -9,10 +9,7 @@ description = """MPI for Python (mpi4py) provides bindings of the Message Passin toolchain = {'name': 'intel', 'version': '2015b'} -source_urls = [ - BITBUCKET_DOWNLOADS, - GOOGLECODE_SOURCE, -] +source_urls = [BITBUCKET_DOWNLOADS] sources = [SOURCE_TAR_GZ] py_maj_min = '2.7' diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.11-timed-pingpong.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.11-timed-pingpong.eb new file mode 100644 index 0000000000000000000000000000000000000000..8f22d6b6077390304892791b58e0d50067804930 --- /dev/null +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2015b-Python-2.7.11-timed-pingpong.eb @@ -0,0 +1,34 @@ +easyblock = 'PythonPackage' + +name = 'mpi4py' +version = '1.3.1' +label = 'timed-pingpong' +versionsuffix = '-Python-%%(pyver)s-%s' % label + +homepage = 'https://bitbucket.org/mpi4py/mpi4py' +description = """MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for + the Python programming language, allowing any Python program to exploit multiple processors.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [BITBUCKET_DOWNLOADS] +sources = [SOURCE_TAR_GZ] + +patches = ['mpi4py-%%(version)s_%s.patch' % label] + +dependencies = [('Python', '2.7.11')] + +# force rebuilding everything, including patched files +buildopts = '--force' + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/mpi4py'], +} + +# check that timed pingpong routines that are added via the patch are available +sanity_check_commands = [ + ('python', '-c "from mpi4py.MPI import Comm; import sys; sys.exit((1, 0)[\'PingpongRS\' in dir(Comm)])"'), +] + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2016a-Python-2.7.11-timed-pingpong.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2016a-Python-2.7.11-timed-pingpong.eb new file mode 100644 index 0000000000000000000000000000000000000000..654b6f59ec1756e96f8a951965d4aa6a9afc3cc7 --- /dev/null +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-1.3.1-intel-2016a-Python-2.7.11-timed-pingpong.eb @@ -0,0 +1,34 @@ +easyblock = 'PythonPackage' + +name = 'mpi4py' +version = '1.3.1' +label = 'timed-pingpong' +versionsuffix = '-Python-%%(pyver)s-%s' % label + +homepage = 'https://bitbucket.org/mpi4py/mpi4py' +description = """MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for + the Python programming language, allowing any Python program to exploit multiple processors.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [BITBUCKET_DOWNLOADS] +sources = [SOURCE_TAR_GZ] + +patches = ['mpi4py-%%(version)s_%s.patch' % label] + +dependencies = [('Python', '2.7.11')] + +# force rebuilding everything, including patched files +buildopts = '--force' + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/mpi4py'], +} + +# check that timed pingpong routines that are added via the patch are available +sanity_check_commands = [ + ('python', '-c "from mpi4py.MPI import Comm; import sys; sys.exit((1, 0)[\'PingpongRS\' in dir(Comm)])"'), +] + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/m/mpi4py/mpi4py-2.0.0-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/m/mpi4py/mpi4py-2.0.0-intel-2015b-Python-2.7.10.eb index 336877544bdad4bdeb6f81e6abb5e31bb68e467a..0bec59079b83e83a48b7b662db060f7e25a6ef25 100644 --- a/easybuild/easyconfigs/m/mpi4py/mpi4py-2.0.0-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/m/mpi4py/mpi4py-2.0.0-intel-2015b-Python-2.7.10.eb @@ -9,10 +9,7 @@ description = """MPI for Python (mpi4py) provides bindings of the Message Passin toolchain = {'name': 'intel', 'version': '2015b'} -source_urls = [ - BITBUCKET_DOWNLOADS, - GOOGLECODE_SOURCE, -] +source_urls = [BITBUCKET_DOWNLOADS] sources = [SOURCE_TAR_GZ] py_maj_min = '2.7' diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb index dd7cd820906e8e0a3c29ee3687cec39003a52fbb..b4ca6871ed0a1640d0f001d4f7cff2d5b2ef21cd 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goalf-1.1.0-no-OFED.eb @@ -34,9 +34,9 @@ patches = ['mpiBLAST_disable-ncbi-X11-apps.patch'] buildopts = 'ncbi all' sanity_check_paths = { - 'files': ["bin/mpiblast"], - 'dirs': [] - } + 'files': ["bin/mpiblast"], + 'dirs': [] +} parallel = 1 diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb index 7996ccccb17f7944b2845e71f7684d52158681c1..273a8c9d5f3d78764ba95476a1b0345c3e1e3ee6 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-goolf-1.4.10.eb @@ -33,9 +33,9 @@ patches = ['mpiBLAST_disable-ncbi-X11-apps.patch'] buildopts = 'ncbi all' sanity_check_paths = { - 'files': ["bin/mpiblast"], - 'dirs': [] - } + 'files': ["bin/mpiblast"], + 'dirs': [] +} parallel = 1 diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb index ed6214c594c1e1455086e22f7f7cb4adcdab4e6e..f14049a15f0565412ac712b03d72dc5a9daf4835 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-4.0.6.eb @@ -34,9 +34,9 @@ patches = ['mpiBLAST_disable-ncbi-X11-apps.patch'] buildopts = 'ncbi all' sanity_check_paths = { - 'files': ["bin/mpiblast"], - 'dirs': [] - } + 'files': ["bin/mpiblast"], + 'dirs': [] +} parallel = 1 diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb index 61e20d40246e356d6eb54fb42fc89ef1416f540e..1bb43bc486d63198b04de31940f0815d583d58cf 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.2.0.eb @@ -34,9 +34,9 @@ patches = ['mpiBLAST_disable-ncbi-X11-apps.patch'] buildopts = 'ncbi all' sanity_check_paths = { - 'files': ["bin/mpiblast"], - 'dirs': [] - } + 'files': ["bin/mpiblast"], + 'dirs': [] +} parallel = 1 diff --git a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb index 7a012e8c9b337c135b7c30db0b4cf3bdc8c9748a..58c91d09bcfaa73a523f8382b7bc85cc01d0e314 100644 --- a/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/m/mpiBLAST/mpiBLAST-1.6.0-ictce-5.3.0.eb @@ -23,7 +23,6 @@ description = """mpiBLAST is a freely available, open-source, parallel implement mpiBLAST is also portable across many different platforms and operating systems.""" - toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'pic': True, 'usempi': True} @@ -36,9 +35,9 @@ patches = ['mpiBLAST_disable-ncbi-X11-apps.patch'] buildopts = 'ncbi all' sanity_check_paths = { - 'files': ["bin/mpiblast"], - 'dirs': [] - } + 'files': ["bin/mpiblast"], + 'dirs': [] +} parallel = 1 diff --git a/easybuild/easyconfigs/m/mympingpong/mympingpong-0.7.0-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/m/mympingpong/mympingpong-0.7.0-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..e243ebde5334d29f3e380cd6c9fe07e7d9518fdd --- /dev/null +++ b/easybuild/easyconfigs/m/mympingpong/mympingpong-0.7.0-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,33 @@ +easyblock = 'PythonPackage' + +name = 'mympingpong' +version = '0.7.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/hpcugent/mympingpong' +description = """A mpi4py based random pair pingpong network stress test.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +vsc_base_ver = '2.4.17' +dependencies = [ + ('Python', '2.7.11'), + ('vsc-base', vsc_base_ver, versionsuffix), + ('vsc-mympirun', '3.4.2', versionsuffix + '-vsc-base-%s' % vsc_base_ver), + ('matplotlib', '1.5.1', versionsuffix), + ('h5py', '2.5.0', versionsuffix + '-HDF5-1.8.16'), + ('mpi4py', '1.3.1', versionsuffix + '-timed-pingpong'), + ('lxml', '3.5.0', versionsuffix), +] + +options = {'modulename': 'vsc.mympingpong'} + +sanity_check_paths = { + 'files': ['bin/mympingpong', 'bin/mympingponganalysis'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'perf' diff --git a/easybuild/easyconfigs/m/mympingpong/mympingpong-0.7.0-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/m/mympingpong/mympingpong-0.7.0-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..b5da145493d07ca5cc98f4d1b525fdd527444913 --- /dev/null +++ b/easybuild/easyconfigs/m/mympingpong/mympingpong-0.7.0-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,33 @@ +easyblock = 'PythonPackage' + +name = 'mympingpong' +version = '0.7.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/hpcugent/mympingpong' +description = """A mpi4py based random pair pingpong network stress test.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +vsc_base_ver = '2.4.17' +dependencies = [ + ('Python', '2.7.11'), + ('vsc-base', vsc_base_ver, versionsuffix), + ('vsc-mympirun', '3.4.2', versionsuffix + '-vsc-base-%s' % vsc_base_ver), + ('matplotlib', '1.5.1', versionsuffix), + ('h5py', '2.5.0', versionsuffix + '-HDF5-1.8.16'), + ('mpi4py', '1.3.1', versionsuffix + '-timed-pingpong'), + ('lxml', '3.5.0', versionsuffix), +] + +options = {'modulename': 'vsc.mympingpong'} + +sanity_check_paths = { + 'files': ['bin/mympingpong', 'bin/mympingponganalysis'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'perf' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..54389e341593b305b74656e3ea913aa89c9e1f2f --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-foss-2015a.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.11.08' + +homepage = 'http://www.nasm.us/' +description = """NASM: General-purpose x86 assembler""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-gimkl-2.11.5.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-gimkl-2.11.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..60a507ddb83985ad1a08dc85ce34dfc209dcce27 --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-gimkl-2.11.5.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.11.08' + +homepage = 'http://www.nasm.us/' +description = """NASM: General-purpose x86 assembler""" + +toolchain = {'name': 'gimkl', 'version': '2.11.5'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..617fb0352331ac77dd9f693af31014a4b577e247 --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-goolf-1.4.10.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.11.08' + +homepage = 'http://www.nasm.us/' +description = """NASM: General-purpose x86 assembler""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2016a.eb b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..7fa10b2782207828b8c541e1e19928ccb08ec229 --- /dev/null +++ b/easybuild/easyconfigs/n/NASM/NASM-2.11.08-intel-2016a.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'NASM' +version = '2.11.08' + +homepage = 'http://www.nasm.us/' +description = """NASM: General-purpose x86 assembler""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['http://www.nasm.us/pub/nasm/releasebuilds/%(version)s'] + +sanity_check_paths = { + 'files': ['bin/nasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb index c5936a51c75235c8c76d28e187152dd88ba861eb..c4688cb405a6c9879ab9e44fbd5eb73666be1759 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goalf-1.1.0-no-OFED.eb @@ -34,8 +34,8 @@ dependencies = [('Boost', '1.51.0')] configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' sanity_check_paths = { - 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], - 'dirs': [] - } + 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb index b889e9351603e87997ee1cc8eb4a97f31bf5d863..b11e19a8317bd64e59945570c9a007552371ff7c 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-goolf-1.4.10.eb @@ -33,8 +33,8 @@ dependencies = [('Boost', '1.51.0')] configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' sanity_check_paths = { - 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], - 'dirs': [] - } + 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb index af1e8856cf9ce236511fe2a0266b8699816fdbca..7d8e37d42dacb7b6effc2e39172dee842585cc8d 100644 --- a/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/n/NCBI-Toolkit/NCBI-Toolkit-9.0.0-ictce-4.0.6.eb @@ -29,17 +29,17 @@ sources = ['ncbi_cxx--%s.tar.gz' % src_ver] source_urls = ['ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools++/ARCHIVE/%s' % src_ver] patches = [ - 'NCBI-Toolkit_make-install-fix.patch', - 'NCBI-Toolkit-9.0.0_ictce-fixes.patch' - ] + 'NCBI-Toolkit_make-install-fix.patch', + 'NCBI-Toolkit-9.0.0_ictce-fixes.patch' +] dependencies = [('Boost', '1.51.0')] configopts = '--with-boost=$EBROOTBOOST --with-64 --with-bin-release --without-debug --with-mt' sanity_check_paths = { - 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], - 'dirs': [] - } + 'files': ["bin/blastn", "bin/blastp", "bin/blastx"], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/n/NCO/NCO-4.4.4-ictce-5.4.0.eb b/easybuild/easyconfigs/n/NCO/NCO-4.4.4-ictce-5.4.0.eb index 010a358d9234751705d9c4ad1d6456c266c924a4..7fd080e24fa3cdb1ce901de0ecaf1db7d8bfaeab 100644 --- a/easybuild/easyconfigs/n/NCO/NCO-4.4.4-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/n/NCO/NCO-4.4.4-ictce-5.4.0.eb @@ -20,9 +20,10 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['ncap2', 'ncatted', 'ncbo', 'ncdiff', 'ncea', 'ncecat', 'nces', 'ncflint', - 'ncks', 'ncpdq', 'ncra', 'ncrcat', 'ncrename']], - 'dirs': [], + 'files': ['bin/nc%s' % x for x in ['ap2', 'atted', 'bo', 'diff', 'ea', 'ecat', 'es', 'flint', + 'ks', 'pdq', 'ra', 'rcat', 'rename']] + + ['lib/libnco.a', 'lib/libnco.%s' % SHLIB_EXT, 'lib/libnco_c++.a', 'lib/libnco_c++.%s' % SHLIB_EXT], + 'dirs': ['include'], } moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/NCO/NCO-4.4.4-intel-2014b.eb b/easybuild/easyconfigs/n/NCO/NCO-4.4.4-intel-2014b.eb index 434cce1376537213ffbbb9f26142a26595eb6743..91425320d28ea09035d5a758f31fc94a298c7d83 100644 --- a/easybuild/easyconfigs/n/NCO/NCO-4.4.4-intel-2014b.eb +++ b/easybuild/easyconfigs/n/NCO/NCO-4.4.4-intel-2014b.eb @@ -22,7 +22,7 @@ dependencies = [ sanity_check_paths = { 'files': ['bin/nc%s' % x for x in ['ap2', 'atted', 'bo', 'diff', 'ea', 'ecat', 'es', 'flint', 'ks', 'pdq', 'ra', 'rcat', 'rename']] + - ['lib/libnco.a', 'lib/libnco.so', 'lib/libnco_c++.a', 'lib/libnco_c++.so'], + ['lib/libnco.a', 'lib/libnco.%s' % SHLIB_EXT, 'lib/libnco_c++.a', 'lib/libnco_c++.%s' % SHLIB_EXT], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/n/NCO/NCO-4.4.7-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/n/NCO/NCO-4.4.7-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..b849d1d7ccc654a39a36963043d88a04914cc41a --- /dev/null +++ b/easybuild/easyconfigs/n/NCO/NCO-4.4.7-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,45 @@ +easyblock = 'ConfigureMake' + +name = 'NCO' +version = "4.4.7" +versionsuffix = "-Python-2.7.10" + +homepage = 'http://nco.sourceforge.net/' +description = """The NCO toolkit manipulates and analyzes data stored in netCDF-accessible + formats, including DAP, HDF4, and HDF5. It exploits the geophysical + expressivity of many CF (Climate & Forecast) metadata conventions, + the flexible description of physical dimensions translated by UDUnits, + the network transparency of OPeNDAP, the storage features + (e.g., compression, chunking, groups) of HDF (the Hierarchical Data Format), + and many powerful mathematical and statistical + algorithms of GSL (the GNU Scientific Library).""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'cstd': 'c99'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +builddependencies = [ + ('Bison', '3.0.4'), + ('flex', '2.5.39'), +] + +dependencies = [ + ('ANTLR', '2.7.7', versionsuffix), + ('libdap', '3.14.0', versionsuffix), + ('GSL', '1.16'), + ('UDUNITS', '2.2.19'), + ('netCDF', '4.3.2'), + ('netcdf4-python', '1.1.8', versionsuffix), + ('scipy', '0.16.1', versionsuffix), +] + +sanity_check_paths = { + 'files': ['bin/nc%s' % x for x in ('ap', 'ap2', 'atted', 'bo', 'diff', 'ea', 'ecat', 'es', + 'flint', 'ks', 'pdq', 'ra', 'rcat', 'rename', 'wa')] + + ['lib/libnco.a', 'lib/libnco.%s' % SHLIB_EXT, 'lib/libnco_c++.a', 'lib/libnco_c++.%s' % SHLIB_EXT], + 'dirs': ['include'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/NCO/NCO-4.5.1-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/n/NCO/NCO-4.5.1-intel-2015a-Python-2.7.10.eb index 3612474f0c5c07d5e2dab701e421a916f14edc75..88f85c411095cb4be3f9cdf3de9e8fe620e253d2 100644 --- a/easybuild/easyconfigs/n/NCO/NCO-4.5.1-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/n/NCO/NCO-4.5.1-intel-2015a-Python-2.7.10.eb @@ -16,7 +16,7 @@ description = """The NCO toolkit manipulates and analyzes data stored in netCDF- toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'cstd': 'c99'} - + source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] @@ -34,7 +34,9 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/nc%s' % x for x in ('ap', 'ap2', 'atted', 'bo', 'ecat', 'flint', 'ks', 'pdq', 'ra', 'rename', 'wa')], + 'files': ['bin/nc%s' % x for x in ('ap', 'ap2', 'atted', 'bo', 'diff', 'ea', 'ecat', 'es', + 'flint', 'ks', 'pdq', 'ra', 'rcat', 'rename', 'wa')] + + ['lib/libnco.a', 'lib/libnco.%s' % SHLIB_EXT, 'lib/libnco_c++.a', 'lib/libnco_c++.%s' % SHLIB_EXT], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/n/NEMO/NEMO-3.4-r5541-ictce-6.1.5-IC3.eb b/easybuild/easyconfigs/n/NEMO/NEMO-3.4-r5541-ictce-6.1.5-IC3.eb index 3f22d894436ef0799bd9c4092a0c7e13cebe953f..cb8f9487e8adc4178db812ff8e920be22b744ea5 100644 --- a/easybuild/easyconfigs/n/NEMO/NEMO-3.4-r5541-ictce-6.1.5-IC3.eb +++ b/easybuild/easyconfigs/n/NEMO/NEMO-3.4-r5541-ictce-6.1.5-IC3.eb @@ -6,7 +6,7 @@ homepage = 'http://www.nemo-ocean.eu/' description = """NEMO (Nucleus for European Modelling of the Ocean) is a state-of-the-art modeling framework for oceanographic research, operational oceanography seasonal forecast and climate studies.""" -toolchain = {'name': 'ictce','version': '6.1.5'} +toolchain = {'name': 'ictce', 'version': '6.1.5'} toolchainopts = {'opt': False, 'optarch': False} # authenticated SVN access required diff --git a/easybuild/easyconfigs/n/NEdit/NEdit-5.5-Linux-x86.eb b/easybuild/easyconfigs/n/NEdit/NEdit-5.5-Linux-x86.eb index 6fc9490675bc6a1f4f4c378f6b27ac21fbd384b7..48049683384f77db933f0f645ecdb75070a54aac 100644 --- a/easybuild/easyconfigs/n/NEdit/NEdit-5.5-Linux-x86.eb +++ b/easybuild/easyconfigs/n/NEdit/NEdit-5.5-Linux-x86.eb @@ -12,7 +12,7 @@ description = """NEdit is a multi-purpose text editor for the X Window System, toolchain = {'version': 'dummy', 'name': 'dummy'} subdir = '_'.join(version.split('-')[0].split('.')) -source_urls = ['http://ftp.vim.org/editors/NEdit/v%s/executables' % subdir ] +source_urls = ['http://ftp.vim.org/editors/NEdit/v%s/executables' % subdir] sources = ['%(namelower)s-%(version)s%(versionsuffix)s.tar.gz'] modextrapaths = { diff --git a/easybuild/easyconfigs/n/NFFT/NFFT-3.3.0-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/n/NFFT/NFFT-3.3.0-CrayGNU-2015.06-XC.eb similarity index 80% rename from easybuild/easyconfigs/n/NFFT/NFFT-3.3.0-CrayGNU-5.2.40.eb rename to easybuild/easyconfigs/n/NFFT/NFFT-3.3.0-CrayGNU-2015.06-XC.eb index dca0868591c7aa4baa077e3c315ac42bbdccc353..f01696474882de502bcfdd202eca3de02b9b6d51 100644 --- a/easybuild/easyconfigs/n/NFFT/NFFT-3.3.0-CrayGNU-5.2.40.eb +++ b/easybuild/easyconfigs/n/NFFT/NFFT-3.3.0-CrayGNU-2015.06-XC.eb @@ -8,14 +8,17 @@ description = """The NFFT (nonequispaced fast Fourier transform or nonuniform fa library for computing the nonequispaced discrete Fourier transform (NDFT) and its generalisations in one or more dimensions, of arbitrary input size, and of complex data.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} -toolchainopts = { 'dynamic': True } +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} source_urls = ['https://www-user.tu-chemnitz.de/~potts/nfft/download/'] sources = [SOURCELOWER_TAR_GZ] +dependencies = [ + ('fftw/3.3.4.3', EXTERNAL_MODULE), +] + sanity_check_paths = { - 'files': ['include/nfft3.h', 'include/nfft3mp.h', 'lib/libnfft3.a', 'lib/libnfft3.so'], + 'files': ['include/nfft3.h', 'include/nfft3mp.h', 'lib/libnfft3.a', 'lib/libnfft3.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/n/NFFT/NFFT-3.3.0-CrayGNU-2015.11-XC.eb b/easybuild/easyconfigs/n/NFFT/NFFT-3.3.0-CrayGNU-2015.11-XC.eb new file mode 100644 index 0000000000000000000000000000000000000000..10957199be853104bf0d061cae04c6b221f3e3b4 --- /dev/null +++ b/easybuild/easyconfigs/n/NFFT/NFFT-3.3.0-CrayGNU-2015.11-XC.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'NFFT' +version = '3.3.0' + +homepage = 'https://www-user.tu-chemnitz.de/~potts/nfft/' +description = """The NFFT (nonequispaced fast Fourier transform or nonuniform fast Fourier transform) is a C subroutine + library for computing the nonequispaced discrete Fourier transform (NDFT) and its generalisations in one or more + dimensions, of arbitrary input size, and of complex data.""" + +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} + +source_urls = ['https://www-user.tu-chemnitz.de/~potts/nfft/download/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('fftw/3.3.4.5', EXTERNAL_MODULE), +] + +sanity_check_paths = { + 'files': ['include/nfft3.h', 'include/nfft3mp.h', 'lib/libnfft3.a', 'lib/libnfft3.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/n/NFFT/NFFT-3.3.0-foss-2015a.eb b/easybuild/easyconfigs/n/NFFT/NFFT-3.3.0-foss-2015a.eb index 263c3c6dac7d48ea5b196aced4a54d1cf082ca1c..80c497f2b9aa58b8a20a5811ab9bb0430f739d2b 100644 --- a/easybuild/easyconfigs/n/NFFT/NFFT-3.3.0-foss-2015a.eb +++ b/easybuild/easyconfigs/n/NFFT/NFFT-3.3.0-foss-2015a.eb @@ -16,7 +16,7 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('FFTW', '3.3.4', '', ('gompi', '2015a'))] sanity_check_paths = { - 'files': ['include/nfft3.h', 'include/nfft3mp.h', 'lib/libnfft3.a', 'lib/libnfft3.so'], + 'files': ['include/nfft3.h', 'include/nfft3mp.h', 'lib/libnfft3.a', 'lib/libnfft3.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/n/NFFT/NFFT-3.3.0-intel-2015a.eb b/easybuild/easyconfigs/n/NFFT/NFFT-3.3.0-intel-2015a.eb index 0e939b4038921b7dd6cf0b7b16e44776fe6fe957..d9068963edf3cf08ae1104b12abc416211ec2ec9 100644 --- a/easybuild/easyconfigs/n/NFFT/NFFT-3.3.0-intel-2015a.eb +++ b/easybuild/easyconfigs/n/NFFT/NFFT-3.3.0-intel-2015a.eb @@ -16,7 +16,7 @@ sources = [SOURCELOWER_TAR_GZ] dependencies = [('FFTW', '3.3.4')] sanity_check_paths = { - 'files': ['include/nfft3.h', 'include/nfft3mp.h', 'lib/libnfft3.a', 'lib/libnfft3.so'], + 'files': ['include/nfft3.h', 'include/nfft3mp.h', 'lib/libnfft3.a', 'lib/libnfft3.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/n/NWChem/NWChem-6.3.revision2-intel-2014b-2013-10-17-Python-2.7.8.eb b/easybuild/easyconfigs/n/NWChem/NWChem-6.3.revision2-intel-2014b-2013-10-17-Python-2.7.8.eb index 0e843ffa38f0a4d83fd26a88243bc57beea6cfef..acc8037f03ee429ea46449307efcc60a1cd4cea3 100644 --- a/easybuild/easyconfigs/n/NWChem/NWChem-6.3.revision2-intel-2014b-2013-10-17-Python-2.7.8.eb +++ b/easybuild/easyconfigs/n/NWChem/NWChem-6.3.revision2-intel-2014b-2013-10-17-Python-2.7.8.eb @@ -12,7 +12,7 @@ description = """NWChem aims to provide its users with computational chemistry t toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'i8': True} -source_urls = [ 'http://www.nwchem-sw.org/download.php?f='] +source_urls = ['http://www.nwchem-sw.org/download.php?f='] verdate = '2013-10-17' sources = ['Nwchem-%s-src.%s.tar.gz' % (version, verdate)] diff --git a/easybuild/easyconfigs/n/NWChem/NWChem-6.5.revision26243-intel-2014b-2014-09-10-Python-2.7.8.eb b/easybuild/easyconfigs/n/NWChem/NWChem-6.5.revision26243-intel-2014b-2014-09-10-Python-2.7.8.eb index 2eefc9a7f35a4bb722e574829d36ffd5702995fb..ec0a191ad4cee030e993e3a11864539a5913de93 100644 --- a/easybuild/easyconfigs/n/NWChem/NWChem-6.5.revision26243-intel-2014b-2014-09-10-Python-2.7.8.eb +++ b/easybuild/easyconfigs/n/NWChem/NWChem-6.5.revision26243-intel-2014b-2014-09-10-Python-2.7.8.eb @@ -12,7 +12,7 @@ description = """NWChem aims to provide its users with computational chemistry t toolchain = {'name': 'intel', 'version': '2014b'} toolchainopts = {'i8': True} -source_urls = [ 'http://www.nwchem-sw.org/download.php?f='] +source_urls = ['http://www.nwchem-sw.org/download.php?f='] verdate = '2014-09-10' sources = ['Nwchem-%s-src.%s.tar.bz2' % (version, verdate)] diff --git a/easybuild/easyconfigs/n/NWChem/NWChem-6.5.revision26243-intel-2015b-2014-09-10-Python-2.7.10.eb b/easybuild/easyconfigs/n/NWChem/NWChem-6.5.revision26243-intel-2015b-2014-09-10-Python-2.7.10.eb index 918b9ffd9a94c30f67ef628f9e887876df7d965e..cfb063858e7c510b4b07aebd878a67902ea2c16e 100644 --- a/easybuild/easyconfigs/n/NWChem/NWChem-6.5.revision26243-intel-2015b-2014-09-10-Python-2.7.10.eb +++ b/easybuild/easyconfigs/n/NWChem/NWChem-6.5.revision26243-intel-2015b-2014-09-10-Python-2.7.10.eb @@ -12,7 +12,7 @@ description = """NWChem aims to provide its users with computational chemistry t toolchain = {'name': 'intel', 'version': '2015b'} toolchainopts = {'i8': True} -source_urls = [ 'http://www.nwchem-sw.org/download.php?f='] +source_urls = ['http://www.nwchem-sw.org/download.php?f='] verdate = '2014-09-10' sources = ['Nwchem-%s-src.%s.tar.bz2' % (version, verdate)] diff --git a/easybuild/easyconfigs/n/NextClip/NextClip-1.3.1-foss-2015b.eb b/easybuild/easyconfigs/n/NextClip/NextClip-1.3.1-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..3b2f0c8e139c8e9611e224cec6f6ad432e16e394 --- /dev/null +++ b/easybuild/easyconfigs/n/NextClip/NextClip-1.3.1-foss-2015b.eb @@ -0,0 +1,26 @@ +easyblock = 'MakeCp' + +name = 'NextClip' +version = '1.3.1' + +homepage = 'https://github.com/richardmleggett/nextclip' +description = """Nextera Long Mate Pair analysis and processing tool.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = ['https://github.com/richardmleggett/nextclip/archive'] +sources = ['NextClip_v%(version)s.tar.gz'] + +patches = ['NextClip_scripts_shebang.patch'] + +files_to_copy = ['bin', 'examples', 'scripts', 'nextclipmanual.pdf'] + +sanity_check_paths = { + 'files': ["bin/nextclip"], + 'dirs': [], +} + +# to add script folder to path just uncomment this line +modextrapaths = {'PATH': 'scripts'} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/n/NextClip/NextClip_scripts_shebang.patch b/easybuild/easyconfigs/n/NextClip/NextClip_scripts_shebang.patch new file mode 100644 index 0000000000000000000000000000000000000000..41d0a5aee9afc4bd045f08f071f5d2a48743eb8e --- /dev/null +++ b/easybuild/easyconfigs/n/NextClip/NextClip_scripts_shebang.patch @@ -0,0 +1,34 @@ +Fix hardcoding of /usr/bin/perl, use perl available through $PATH +author: Nathan S. Watson-Haigh (ACPFG) +--- a/scripts/nextclip_index_reference.pl ++++ b/scripts/nextclip_index_reference.pl +@@ -1,4 +1,4 @@ +-#!/usr/bin/perl -w ++#!/usr/bin/env perl + + # Script: nextclip_index_reference.pl + # Purpose: Produce simple index file of a reference +--- a/scripts/nextclip_lmp_analysis.pl ++++ b/scripts/nextclip_lmp_analysis.pl +@@ -1,4 +1,4 @@ +-#!/usr/bin/perl -w ++#!/usr/bin/env perl + + # Script: nextclip_lmp_analysis.pl + # Purpose: NextClip Long Mate Pair analysis pipeline +--- a/scripts/nextclip_make_report.pl ++++ b/scripts/nextclip_make_report.pl +@@ -1,4 +1,4 @@ +-#!/usr/bin/perl -w ++#!/usr/bin/env perl + + # Script: nextclip_make_report.pl + # Purpose: Produce PDF report of NextClip analysis +--- a/scripts/nextclip_sam_parse.pl ++++ b/scripts/nextclip_sam_parse.pl +@@ -1,4 +1,4 @@ +-#!/usr/bin/perl -w ++#!/usr/bin/env perl + + # Script: nextclip_sam_parse.pl + # Purpose: Parse SAM files for NextClip diff --git a/easybuild/easyconfigs/n/ncdf4/ncdf4-1.15-intel-2015a-R-3.2.1.eb b/easybuild/easyconfigs/n/ncdf4/ncdf4-1.15-intel-2015a-R-3.2.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..ea4c448508b4a8b8a9ec3e36d70a2e824b186650 --- /dev/null +++ b/easybuild/easyconfigs/n/ncdf4/ncdf4-1.15-intel-2015a-R-3.2.1.eb @@ -0,0 +1,31 @@ +easyblock = 'RPackage' + +name = 'ncdf4' +version = '1.15' + +homepage = 'http://cran.r-project.org/web/packages/%(name)s' +description = """ncdf4: Interface to Unidata netCDF (version 4 or earlier) format data files""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = [ + 'http://cran.r-project.org/src/contrib/', + 'http://cran.r-project.org/src/contrib/Archive/$(name)s/', +] +sources = ['%(name)s_%(version)s.tar.gz'] + +r = 'R' +rver = '3.2.1' +versionsuffix = '-%s-%s' % (r, rver) + +dependencies = [ + (r, rver), + ('netCDF', '4.3.2'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['ncdf4'], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.1-ictce-5.3.0-R-3.0.2-bare.eb b/easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.1-ictce-5.3.0-R-3.0.2-bare.eb index 4ef7a218bc9727a13f77d6a46daa71efb6e8cf23..cf94b3ef4d30fb1bb90f08a956800db24f26ef0f 100644 --- a/easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.1-ictce-5.3.0-R-3.0.2-bare.eb +++ b/easybuild/easyconfigs/n/ncdf4/ncdf4-1.6.1-ictce-5.3.0-R-3.0.2-bare.eb @@ -20,7 +20,7 @@ r = 'R' rver = '3.0.2' rversuf = '-bare' -versionsuffix = '-%s-%s%s' % (r, rver,rversuf) +versionsuffix = '-%s-%s%s' % (r, rver, rversuf) dependencies = [ (r, rver, rversuf), diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-2015.06-XC.eb similarity index 96% rename from easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.25.eb rename to easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-2015.06-XC.eb index 01680ab5b7d7480e3f51ccc11cc8751a58a70653..39a02a2b9d3cd0d6230fed2f90ad6b82498f989f 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-2015.06-XC.eb @@ -8,7 +8,7 @@ description = """The Ncurses (new curses) library is a free software emulation o and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} toolchainopts = {'optarch': True, 'shared': True, 'pic': True} source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-2015.11-XC.eb similarity index 96% rename from easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.40.eb rename to easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-2015.11-XC.eb index 6f00fdbd514cfcb8d9a437c6a016daff6de25974..a3d14a3a11f23655d6d8e346a5c199f3fccc2795 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.2.40.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-2015.11-XC.eb @@ -8,7 +8,7 @@ description = """The Ncurses (new curses) library is a free software emulation o and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} toolchainopts = {'optarch': True, 'shared': True, 'pic': True} source_urls = [GNU_SOURCE] diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-4.9.3.eb b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-4.9.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..eab9da36db7595cf134d65292f3571c48391de32 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-GCCcore-4.9.3.eb @@ -0,0 +1,36 @@ +easyblock = 'ConfigureMake' + +name = 'ncurses' +version = '6.0' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'GCCcore', 'version': '4.9.3'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +builddependencies = [('binutils', '2.25')] + +configopts = [ + # default build + '--with-shared --enable-overwrite', + # the UTF-8 enabled version (ncursesw) + '--with-shared --enable-overwrite --enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' +] + +libs = ["form", "menu", "ncurses", "panel"] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ["captoinfo", "clear", "infocmp", "infotocap", "ncurses%(version_major)s-config", + "reset", "tabs", "tic", "toe", "tput", "tset"]] + + ['lib/lib%s%s.a' % (x, y) for x in libs for y in ['', '_g', 'w', 'w_g']] + + ['lib/lib%s%s.%s' % (x, y, SHLIB_EXT) for x in libs for y in ['', 'w']] + + ['lib/libncurses++%s.a' % x for x in ['', 'w']], + 'dirs': ['include', 'include/ncursesw'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-foss-2016a.eb similarity index 84% rename from easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.1.29.eb rename to easybuild/easyconfigs/n/ncurses/ncurses-6.0-foss-2016a.eb index 6b7bb1c3472d6faa7a233f230a19c91c05b04dd3..6029357e961c47bb3ba2f920abb5b420f48aadce 100644 --- a/easybuild/easyconfigs/n/ncurses/ncurses-5.9-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-foss-2016a.eb @@ -1,21 +1,19 @@ easyblock = 'ConfigureMake' name = 'ncurses' -version = '5.9' +version = '6.0' homepage = 'http://www.gnu.org/software/ncurses/' description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} -toolchainopts = {'optarch': True, 'shared': True, 'pic': True} +toolchain = {'name': 'foss', 'version': '2016a'} +toolchainopts = {'optarch': True, 'pic': True} source_urls = [GNU_SOURCE] sources = [SOURCE_TAR_GZ] -patches = ['ncurses-%(version)s_configure_darwin.patch'] - configopts = [ # default build '--with-shared --enable-overwrite', @@ -25,7 +23,7 @@ configopts = [ libs = ["form", "menu", "ncurses", "panel"] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ["captoinfo", "clear", "infocmp", "infotocap", "ncurses5-config", + 'files': ['bin/%s' % x for x in ["captoinfo", "clear", "infocmp", "infotocap", "ncurses%(version_major)s-config", "reset", "tabs", "tic", "toe", "tput", "tset"]] + ['lib/lib%s%s.a' % (x, y) for x in libs for y in ['', '_g', 'w', 'w_g']] + ['lib/lib%s%s.so' % (x, y) for x in libs for y in ['', 'w']] + diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-6.0-intel-2016a.eb b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..852b0df6bb6aaa5f84a7f1b4bb27c82b0acf0641 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-6.0-intel-2016a.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'ncurses' +version = '6.0' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +configopts = [ + # default build + '--with-shared --enable-overwrite', + # the UTF-8 enabled version (ncursesw) + '--with-shared --enable-overwrite --enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' +] + +libs = ["form", "menu", "ncurses", "panel"] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ["captoinfo", "clear", "infocmp", "infotocap", "ncurses%(version_major)s-config", + "reset", "tabs", "tic", "toe", "tput", "tset"]] + + ['lib/lib%s%s.a' % (x, y) for x in libs for y in ['', '_g', 'w', 'w_g']] + + ['lib/lib%s%s.so' % (x, y) for x in libs for y in ['', 'w']] + + ['lib/libncurses++%s.a' % x for x in ['', 'w']], + 'dirs': ['include', 'include/ncursesw'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb b/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..51d2a6f5390b67287c3aac50a949cfbfdfa62761 --- /dev/null +++ b/easybuild/easyconfigs/n/ncurses/ncurses-6.0.eb @@ -0,0 +1,34 @@ +easyblock = 'ConfigureMake' + +name = 'ncurses' +version = '6.0' + +homepage = 'http://www.gnu.org/software/ncurses/' +description = """The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, + and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and + function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [GNU_SOURCE] +sources = [SOURCE_TAR_GZ] + +configopts = [ + # default build + '--with-shared --enable-overwrite', + # the UTF-8 enabled version (ncursesw) + '--with-shared --enable-overwrite --enable-ext-colors --enable-widec --includedir=%(installdir)s/include/ncursesw/' +] + +libs = ["form", "menu", "ncurses", "panel"] +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ["captoinfo", "clear", "infocmp", "infotocap", "ncurses%(version_major)s-config", + "reset", "tabs", "tic", "toe", "tput", "tset"]] + + ['lib/lib%s%s.a' % (x, y) for x in libs for y in ['', '_g', 'w', 'w_g']] + + ['lib/lib%s%s.%s' % (x, y, SHLIB_EXT) for x in libs for y in ['', 'w']] + + ['lib/libncurses++%s.a' % x for x in ['', 'w']], + 'dirs': ['include', 'include/ncursesw'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-goolf-1.4.10.eb b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-goolf-1.4.10.eb index e0cfb1558e3ee268b3cfee1869c975f91e0305d3..86801a2825fcc6c329e0a097ba62ab862b14ce45 100644 --- a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-goolf-1.4.10.eb @@ -20,7 +20,7 @@ source_urls = [ dependencies = [('netCDF', '4.2.1.1')] sanity_check_paths = { - 'files': ['include/ncvalues.h', 'include/netcdfcpp.h', 'include/netcdf.hh', 'lib/libnetcdf_c++.a', 'lib/libnetcdf_c++.so'], + 'files': ['include/ncvalues.h', 'include/netcdfcpp.h', 'include/netcdf.hh', 'lib/libnetcdf_c++.a', 'lib/libnetcdf_c++.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13-mt.eb b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13-mt.eb index d47cb17c759e7cd7920c9d7158c04cfd5198a69e..62be978e1001c2af1e65eff855e2928f8bbdd70c 100644 --- a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13-mt.eb +++ b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13-mt.eb @@ -24,7 +24,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['include/ncvalues.h', 'include/netcdfcpp.h', 'include/netcdf.hh', 'lib/libnetcdf_c++.a', 'lib/libnetcdf_c++.so'], + 'files': ['include/ncvalues.h', 'include/netcdfcpp.h', 'include/netcdf.hh', 'lib/libnetcdf_c++.a', 'lib/libnetcdf_c++.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13.eb b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13.eb index 400224b911f0f03f51b8476caa8b5c378e77d8e6..31394ae5b8b918c8ba38ce0cbbab32d7685f136d 100644 --- a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-4.1.13.eb @@ -20,7 +20,7 @@ source_urls = [ dependencies = [('netCDF', '4.2.1.1')] sanity_check_paths = { - 'files': ['include/ncvalues.h', 'include/netcdfcpp.h', 'include/netcdf.hh', 'lib/libnetcdf_c++.a', 'lib/libnetcdf_c++.so'], + 'files': ['include/ncvalues.h', 'include/netcdfcpp.h', 'include/netcdf.hh', 'lib/libnetcdf_c++.a', 'lib/libnetcdf_c++.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-5.3.0.eb b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-5.3.0.eb index 16ea5317c44ad2e4ce3acbefe0d99483abd17034..c93f617359c6237991ce7bc32512f80963a18df0 100644 --- a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-ictce-5.3.0.eb @@ -20,7 +20,7 @@ source_urls = [ dependencies = [('netCDF', '4.2.1.1')] sanity_check_paths = { - 'files': ['include/ncvalues.h', 'include/netcdfcpp.h', 'include/netcdf.hh', 'lib/libnetcdf_c++.a', 'lib/libnetcdf_c++.so'], + 'files': ['include/ncvalues.h', 'include/netcdfcpp.h', 'include/netcdf.hh', 'lib/libnetcdf_c++.a', 'lib/libnetcdf_c++.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-iqacml-3.7.3.eb b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-iqacml-3.7.3.eb index d8cdaf41c40323ce847ca3ddbe5c1bc41c70c602..62b26c83b5a6c6a28d308d48fef1164d3cef0c94 100644 --- a/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/n/netCDF-C++/netCDF-C++-4.2-iqacml-3.7.3.eb @@ -20,7 +20,7 @@ source_urls = [ dependencies = [('netCDF', '4.2.1.1')] sanity_check_paths = { - 'files': ['include/ncvalues.h', 'include/netcdfcpp.h', 'include/netcdf.hh', 'lib/libnetcdf_c++.a', 'lib/libnetcdf_c++.so'], + 'files': ['include/ncvalues.h', 'include/netcdfcpp.h', 'include/netcdf.hh', 'lib/libnetcdf_c++.a', 'lib/libnetcdf_c++.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.2.1-foss-2014b.eb b/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.2.1-foss-2014b.eb index 5fcb22ae6f56dabbb79b5bb89da19e82cea41bdf..9511397c7578b49cd80e0eea13985ea5deba222c 100644 --- a/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.2.1-foss-2014b.eb +++ b/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.2.1-foss-2014b.eb @@ -17,7 +17,7 @@ source_urls = ['https://github.com/Unidata/netcdf-cxx4/archive/'] dependencies = [('netCDF', '4.3.2')] sanity_check_paths = { - 'files': ['include/netcdf', 'lib/libnetcdf_c++4.a', 'lib/libnetcdf_c++4.so'], + 'files': ['include/netcdf', 'lib/libnetcdf_c++4.a', 'lib/libnetcdf_c++4.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.2.1-intel-2014b.eb b/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.2.1-intel-2014b.eb index c46c081007c38b471edb2ac05ecbbd93362e9427..04008305da3afe89d5f14d8ecf49af1a7e691ce5 100644 --- a/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.2.1-intel-2014b.eb +++ b/easybuild/easyconfigs/n/netCDF-C++4/netCDF-C++4-4.2.1-intel-2014b.eb @@ -17,7 +17,7 @@ source_urls = ['https://github.com/Unidata/netcdf-cxx4/archive/'] dependencies = [('netCDF', '4.3.2')] sanity_check_paths = { - 'files': ['include/netcdf', 'lib/libnetcdf_c++4.a', 'lib/libnetcdf_c++4.so'], + 'files': ['include/netcdf', 'lib/libnetcdf_c++4.a', 'lib/libnetcdf_c++4.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.2-goolf-1.5.14.eb b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.2-goolf-1.5.14.eb index bd158f66c56af7e8f4cd8334a66a873497547b5b..3d072019b1e83cfd2314f53944d4bbe6e105915d 100644 --- a/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/n/netCDF-Fortran/netCDF-Fortran-4.2-goolf-1.5.14.eb @@ -6,7 +6,7 @@ description = """NetCDF (network Common Data Form) is a set of software librarie and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.""" -toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchain = {'name': 'goolf', 'version': '1.5.14'} toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.1.3-ictce-4.1.13.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.1.3-ictce-4.1.13.eb index 1cf87a93d6b03b8ef32c01fe8f698438edbe4114..47fa2b79af95ccdfb4c4a898e9f2bde4ffb2446d 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.1.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.1.3-ictce-4.1.13.eb @@ -7,7 +7,7 @@ description = """NetCDF (network Common Data Form) is a set of software librarie scientific data.""" toolchain = {'name': 'ictce', 'version': '4.1.13'} -toolchainopts = {'pic':True} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [ diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.1.3-ictce-5.3.0.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.1.3-ictce-5.3.0.eb index 2e121dba814b25d0730e17363cacb14e1c75bb2e..36ab674b3d8c718341c6804c8d47c20cf51727e0 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.1.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.1.3-ictce-5.3.0.eb @@ -7,7 +7,7 @@ description = """NetCDF (network Common Data Form) is a set of software librarie scientific data.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} -toolchainopts = {'pic':True} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [ diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-goolf-1.5.14.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-goolf-1.5.14.eb index 452797370468a8d706be4e1a1e7b04df67788b83..113ec9d3b844ce34176b183b2e7f5d584d587a66 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-goolf-1.5.14.eb @@ -6,7 +6,7 @@ description = """NetCDF (network Common Data Form) is a set of software librarie and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.""" -toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchain = {'name': 'goolf', 'version': '1.5.14'} toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-ictce-4.1.13-mt.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-ictce-4.1.13-mt.eb index a518b2a451eaadd896c49f43988710278a7d6dcc..46676df71b009b4fd10e0e0425c2bbed423870fd 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-ictce-4.1.13-mt.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-ictce-4.1.13-mt.eb @@ -7,7 +7,7 @@ description = """NetCDF (network Common Data Form) is a set of software librarie and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.""" -toolchain = {'name':'ictce','version':'4.1.13'} +toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'pic': True, 'openmp': True} sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-ictce-4.1.13.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-ictce-4.1.13.eb index 9caf198302785c53e936ddd4eb64d6fa6afc46ca..e5e9ad231d4a2b199d315160825149cfa088683a 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.2.1.1-ictce-4.1.13.eb @@ -6,8 +6,8 @@ description = """NetCDF (network Common Data Form) is a set of software librarie and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.""" -toolchain = {'name':'ictce','version':'4.1.13'} -toolchainopts = {'pic':True} +toolchain = {'name': 'ictce', 'version': '4.1.13'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [ diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-foss-2014b.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-foss-2014b.eb index f0b637b12c033d26d77ddc2ce58d0f484c7a0089..1b6d9c1fa7b68ec1cf3c98e8c9717b8e6fa51f8e 100644 --- a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-foss-2014b.eb +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-foss-2014b.eb @@ -35,4 +35,3 @@ configopts = [ ] moduleclass = 'data' - diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-intel-2015b.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..52365b33f33f80050b4cca69eb83e0417b5a2ce6 --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.2-intel-2015b.eb @@ -0,0 +1,34 @@ +name = 'netCDF' +version = '4.3.2' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'pic': True, 'usempi': True} + +sources = ['v%(version)s.tar.gz'] +source_urls = ['https://github.com/Unidata/netcdf-c/archive'] + +patches = [ + 'netCDF-4.3.2-with-HDF-1.8.13.patch', + 'netCDF-4.3.2-parallel-HDF.patch', +] + +dependencies = [('HDF5', '1.8.13')] + +builddependencies = [ + ('CMake', '3.4.1'), + ('Doxygen', '1.8.10'), + ('cURL', '7.43.0'), +] + +# make sure both static and shared libs are built +configopts = [ + "-DCURL_LIBRARY=$EBROOTCURL/lib/libcurl.%s -DCURL_INCLUDE_DIR=$EBROOTCURL/include -DBUILD_SHARED_LIBS=ON" % SHLIB_EXT, + "-DCURL_LIBRARY=$EBROOTCURL/lib/libcurl.%s -DCURL_INCLUDE_DIR=$EBROOTCURL/include -DBUILD_SHARED_LIBS=OFF" % SHLIB_EXT, +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2015a.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..67ec8a7992c10efb7c1079baef7b2840b9beded5 --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2015a.eb @@ -0,0 +1,34 @@ +name = 'netCDF' +version = '4.3.3.1' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'ftp://ftp.unidata.ucar.edu/pub/netcdf/', + 'ftp://ftp.unidata.ucar.edu/pub/netcdf/old', +] + +dependencies = [ + ('HDF5', '1.8.16'), + ('cURL', '7.46.0'), +] + +builddependencies = [ + ('CMake', '3.4.1'), + ('Doxygen', '1.8.11'), +] + +# make sure both static and shared libs are built +configopts = [ + "-DBUILD_SHARED_LIBS=OFF ", + "-DBUILD_SHARED_LIBS=ON ", +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2015b.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..d5f3ba2170647653827be91e24f9cb6e20648eb5 --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-foss-2015b.eb @@ -0,0 +1,34 @@ +name = 'netCDF' +version = '4.3.3.1' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'pic': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'ftp://ftp.unidata.ucar.edu/pub/netcdf/', + 'ftp://ftp.unidata.ucar.edu/pub/netcdf/old', +] + +dependencies = [ + ('HDF5', '1.8.15-patch1'), + ('cURL', '7.45.0'), +] + +builddependencies = [ + ('CMake', '3.4.1'), + ('Doxygen', '1.8.10'), +] + +# make sure both static and shared libs are built +configopts = [ + "-DBUILD_SHARED_LIBS=OFF ", + "-DBUILD_SHARED_LIBS=ON ", +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2016a.eb b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..40796ae26b8bf39e6909354c34f5fd64b195e7ea --- /dev/null +++ b/easybuild/easyconfigs/n/netCDF/netCDF-4.3.3.1-intel-2016a.eb @@ -0,0 +1,34 @@ +name = 'netCDF' +version = '4.3.3.1' + +homepage = 'http://www.unidata.ucar.edu/software/netcdf/' +description = """NetCDF (network Common Data Form) is a set of software libraries + and machine-independent data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'pic': True, 'usempi': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [ + 'ftp://ftp.unidata.ucar.edu/pub/netcdf/', + 'ftp://ftp.unidata.ucar.edu/pub/netcdf/old', +] + +dependencies = [ + ('HDF5', '1.8.16'), + ('cURL', '7.47.0'), +] + +builddependencies = [ + ('CMake', '3.4.1'), + ('Doxygen', '1.8.11'), +] + +# make sure both static and shared libs are built +configopts = [ + "-DBUILD_SHARED_LIBS=OFF ", + "-DBUILD_SHARED_LIBS=ON ", +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netcdf4-python/netcdf4-python-1.0.7-ictce-5.5.0-Python-2.7.6.eb b/easybuild/easyconfigs/n/netcdf4-python/netcdf4-python-1.0.7-ictce-5.5.0-Python-2.7.6.eb index 4705fe247a6ca5c8d452990dff8f22b23b29f162..b7da81870b563a1da79533113e45105fac8b7ef6 100644 --- a/easybuild/easyconfigs/n/netcdf4-python/netcdf4-python-1.0.7-ictce-5.5.0-Python-2.7.6.eb +++ b/easybuild/easyconfigs/n/netcdf4-python/netcdf4-python-1.0.7-ictce-5.5.0-Python-2.7.6.eb @@ -1,7 +1,7 @@ name = 'netcdf4-python' version = '1.0.7' -homepage = 'https://code.google.com/p/netcdf4-python/' +homepage = 'https://unidata.github.io/netcdf4-python/' description = """Python/numpy interface to netCDF.""" toolchain = {'name': 'ictce', 'version': '5.5.0'} diff --git a/easybuild/easyconfigs/n/netcdf4-python/netcdf4-python-1.1.8-avoid-diskless-test.patch b/easybuild/easyconfigs/n/netcdf4-python/netcdf4-python-1.1.8-avoid-diskless-test.patch new file mode 100644 index 0000000000000000000000000000000000000000..d146f649548b0815386b6003647eb6cf37cee583 --- /dev/null +++ b/easybuild/easyconfigs/n/netcdf4-python/netcdf4-python-1.1.8-avoid-diskless-test.patch @@ -0,0 +1,14 @@ +# this test seems to always fall. The diskless thing is not really diskless it seems +# By Ward Poelmans +diff -ur netcdf4-python-1.1.8rel/test/tst_diskless.py netcdf4-python-1.1.8rel.new/test/tst_diskless.py +--- netcdf4-python-1.1.8rel/test/tst_diskless.py 2015-05-13 16:27:00.000000000 +0200 ++++ netcdf4-python-1.1.8rel.new/test/tst_diskless.py 2016-01-07 14:16:21.851971913 +0100 +@@ -65,7 +65,7 @@ + assert_array_almost_equal(foo[:], ranarr) + assert_array_almost_equal(bar[:], ranarr2) + # file does not actually exist on disk +- assert(os.path.isfile(self.file)==False) ++# assert(os.path.isfile(self.file)==False) + # open persisted file. + # first, check that file does actually exist on disk + assert(os.path.isfile(self.file2)==True) diff --git a/easybuild/easyconfigs/n/netcdf4-python/netcdf4-python-1.1.8-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/n/netcdf4-python/netcdf4-python-1.1.8-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..8bd2e5f95c2eff3edf4e70fad6006d14564fb301 --- /dev/null +++ b/easybuild/easyconfigs/n/netcdf4-python/netcdf4-python-1.1.8-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,28 @@ +name = 'netcdf4-python' +version = '1.1.8' + +homepage = 'https://unidata.github.io/netcdf4-python/' +description = """Python/numpy interface to netCDF.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'usempi': True} + +source_urls = ['https://github.com/Unidata/netcdf4-python/archive/'] +sources = ['v%(version)srel.tar.gz'] + +patches = ['netcdf4-python-%(version)s-avoid-diskless-test.patch'] + +python = 'Python' +pythonver = '2.7.10' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +dependencies = [ + (python, pythonver), + ('numpy', '1.10.4', versionsuffix), + ('HDF5', '1.8.13'), + ('netCDF', '4.3.2'), + ('cURL', '7.43.0'), +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/n/netloc/netloc-0.5-GCC-4.8.3.eb b/easybuild/easyconfigs/n/netloc/netloc-0.5-GCC-4.8.3.eb index 025be1d81d77ad937026294b7c49cbca007406f3..f7783bd5764dc4336b29c4a7d6f6625f1037c8de 100644 --- a/easybuild/easyconfigs/n/netloc/netloc-0.5-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/n/netloc/netloc-0.5-GCC-4.8.3.eb @@ -10,7 +10,7 @@ description = """The Portable Network Locality (netloc) software package provide It is provided as a companion to the Portable Hardware Locality (hwloc) package.""" toolchain = {'name': 'GCC', 'version': '4.8.3'} - + source_urls = [homepage + '/v%(version_major_minor)s/downloads'] sources = [SOURCE_TAR_GZ] @@ -20,6 +20,6 @@ dependencies = [ ] configopts = '--with-hwloc=$EBROOTHWLOC ' # hwloc support -configopts += '--with-jansson=$EBROOTJANSSON ' # jansson support +configopts += '--with-jansson=$EBROOTJANSSON ' # jansson support moduleclass = 'system' diff --git a/easybuild/easyconfigs/n/netloc/netloc-0.5-gcccuda-2.6.10.eb b/easybuild/easyconfigs/n/netloc/netloc-0.5-gcccuda-2.6.10.eb index 6b5126f478bfa0dc7ce0abcba806d44830551626..e1ffe4c74faee5784c62b66688a2703e9c1a31ee 100644 --- a/easybuild/easyconfigs/n/netloc/netloc-0.5-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/n/netloc/netloc-0.5-gcccuda-2.6.10.eb @@ -10,14 +10,14 @@ description = """The Portable Network Locality (netloc) software package provide It is provided as a companion to the Portable Hardware Locality (hwloc) package.""" toolchain = {'name': 'gcccuda', 'version': '2.6.10'} - + dependencies = [ ('hwloc', '1.8'), ('Jansson', '2.5'), ] configopts = '--with-hwloc=$EBROOTHWLOC ' # hwloc support -configopts += '--with-jansson=$EBROOTJANSSON ' # jansson support +configopts += '--with-jansson=$EBROOTJANSSON ' # jansson support # fi. http://www.open-mpi.org/software/netloc/v0.5/downloads/netloc-0.5.tar.gz source_urls = [homepage + '/v%(version_major_minor)s/downloads'] diff --git a/easybuild/easyconfigs/n/nettle/nettle-2.6-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/nettle/nettle-2.6-goalf-1.1.0-no-OFED.eb index 03cdd193de835b7aa2d23f32ed2cafaa5b62b402..12e680ddbd8be359e0454819e3157fa32a735caf 100644 --- a/easybuild/easyconfigs/n/nettle/nettle-2.6-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/nettle/nettle-2.6-goalf-1.1.0-no-OFED.eb @@ -15,7 +15,8 @@ dependencies = [('GMP', '5.0.5')] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['nettle-hash', 'nettle-lfib-stream', 'pkcs1-conv', 'sexp-conv']] + - ['lib64/libhogweed.a', 'lib64/libhogweed.so', 'lib64/libnettle.a', 'lib64/libnettle.so'], + ['lib64/libhogweed.a', 'lib64/libhogweed.%s' % SHLIB_EXT, + 'lib64/libnettle.a', 'lib64/libnettle.%s' % SHLIB_EXT], 'dirs': ['include/nettle'], } diff --git a/easybuild/easyconfigs/n/nettle/nettle-2.6-goolf-1.4.10.eb b/easybuild/easyconfigs/n/nettle/nettle-2.6-goolf-1.4.10.eb index fbf0448f8d2f4adf00ebde3a5597b91e40b9caa5..b72cd92143c5e2a4ad1f8e8c7eac415002609ccc 100644 --- a/easybuild/easyconfigs/n/nettle/nettle-2.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/nettle/nettle-2.6-goolf-1.4.10.eb @@ -15,7 +15,8 @@ dependencies = [('GMP', '5.0.5')] sanity_check_paths = { 'files': ['bin/%s' % x for x in ['nettle-hash', 'nettle-lfib-stream', 'pkcs1-conv', 'sexp-conv']] + - ['lib64/libhogweed.a', 'lib64/libhogweed.so', 'lib64/libnettle.a', 'lib64/libnettle.so'], + ['lib64/libhogweed.a', 'lib64/libhogweed.%s' % SHLIB_EXT, + 'lib64/libnettle.a', 'lib64/libnettle.%s' % SHLIB_EXT], 'dirs': ['include/nettle'], } diff --git a/easybuild/easyconfigs/n/nettle/nettle-3.1.1-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/n/nettle/nettle-3.1.1-GNU-4.9.3-2.25.eb index bf1ecbbd35c70087b71747ca205f89437e9ce68c..e764834b2d0c67b53b474eb7f1ecd8b0c79cf3b8 100644 --- a/easybuild/easyconfigs/n/nettle/nettle-3.1.1-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/n/nettle/nettle-3.1.1-GNU-4.9.3-2.25.eb @@ -20,7 +20,8 @@ dependencies = [ sanity_check_paths = { 'files': ['bin/%s' % x for x in ['nettle-hash', 'nettle-lfib-stream', 'pkcs1-conv', 'sexp-conv']] + - ['lib64/libhogweed.a', 'lib64/libhogweed.so', 'lib64/libnettle.a', 'lib64/libnettle.so'], + ['lib64/libhogweed.a', 'lib64/libhogweed.%s' % SHLIB_EXT, + 'lib64/libnettle.a', 'lib64/libnettle.%s' % SHLIB_EXT], 'dirs': ['include/nettle'], } diff --git a/easybuild/easyconfigs/n/nodejs/nodejs-0.10.24-goolf-1.4.10.eb b/easybuild/easyconfigs/n/nodejs/nodejs-0.10.24-goolf-1.4.10.eb index 51c10e822daa66a50fc15f0225b991fb786ee3fe..0a34435fbed160eefe0015e5e0c4ffd182fa9d16 100644 --- a/easybuild/easyconfigs/n/nodejs/nodejs-0.10.24-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/nodejs/nodejs-0.10.24-goolf-1.4.10.eb @@ -16,7 +16,7 @@ sources = ['node-v%(version)s.tar.gz'] source_urls = ['http://nodejs.org/dist/v%(version)s/'] -dependencies = [('Python','2.7.5')] +dependencies = [('Python', '2.7.5')] sanity_check_paths = { 'files': ["bin/node", "bin/npm", ], diff --git a/easybuild/easyconfigs/n/ns/ns-2.35-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/ns/ns-2.35-goalf-1.1.0-no-OFED.eb index 174f9bf7e2e71137c4e7f2186120e619904dfc71..29818dfb059187edac51712e9cfb8c285798d959 100644 --- a/easybuild/easyconfigs/n/ns/ns-2.35-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/ns/ns-2.35-goalf-1.1.0-no-OFED.eb @@ -20,7 +20,7 @@ dependencies = [ ('Tcl', tcl_ver), ('Tk', tcl_ver), ('otcl', '1.14'), - ('tclcl' , '1.20'), + ('tclcl', '1.20'), ] configopts = "--with-otcl=$EBROOTOTCL --with-tcl=$EBROOTTCL --with-tcl-ver=$EBVERSIONTCL " diff --git a/easybuild/easyconfigs/n/ns/ns-2.35-goolf-1.4.10.eb b/easybuild/easyconfigs/n/ns/ns-2.35-goolf-1.4.10.eb index 057d7763d549f1ea77b376e33aea91a6879a8771..860b1cd2b34832b155506795174e97364125616f 100644 --- a/easybuild/easyconfigs/n/ns/ns-2.35-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/ns/ns-2.35-goolf-1.4.10.eb @@ -22,7 +22,7 @@ dependencies = [ ('Tcl', tcl_ver), ('Tk', tcl_ver), ('otcl', '1.14'), - ('tclcl' , '1.20'), + ('tclcl', '1.20'), ] configopts = "--with-otcl=$EBROOTOTCL --with-tcl=$EBROOTTCL --with-tcl-ver=$EBVERSIONTCL " diff --git a/easybuild/easyconfigs/n/ns/ns-2.35-ictce-5.3.0.eb b/easybuild/easyconfigs/n/ns/ns-2.35-ictce-5.3.0.eb index ded8fdd51cbc55db0025193a11f9947c1773e97a..ddad23bdff8115c273f5247efadd34e39614bbda 100644 --- a/easybuild/easyconfigs/n/ns/ns-2.35-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/ns/ns-2.35-ictce-5.3.0.eb @@ -22,7 +22,7 @@ dependencies = [ ('Tcl', tcl_ver), ('Tk', tcl_ver), ('otcl', '1.14'), - ('tclcl' , '1.20'), + ('tclcl', '1.20'), ] configopts = "--with-otcl=$EBROOTOTCL --with-tcl=$EBROOTTCL --with-tcl-ver=$EBVERSIONTCL " diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb index e56d4ba751895b72c1ab0999c9eb2451444e25f3..dcc13adeafcb250ce66b80338b6aa182299c4b95 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.8.4.eb @@ -23,7 +23,7 @@ builddependencies = [ preconfigopts = './autogen.sh && ' sanity_check_paths = { - 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], 'dirs': ['share/man', 'include'] } diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb index 8629235333c962563b80da159ccb711567b69433..31b7335ae5f797e8dd63d1738cd9cfa54e2ba523 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GCC-4.9.2.eb @@ -24,7 +24,7 @@ preconfigopts = './autogen.sh && ' sanity_check_paths = { - 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], 'dirs': ['share/man', 'include'] } diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb index 52f1df7369287e84717e58036bef9ddf34b18445..727e24951e24167c73a0faccc5d1dd9c6d0b3c4f 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.2-2.25.eb @@ -20,7 +20,7 @@ builddependencies = [('Autotools', '20150215')] preconfigopts = './autogen.sh && ' sanity_check_paths = { - 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], 'dirs': ['share/man', 'include'] } diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.3-2.25.eb index 04cd4b9e23de46364477bf7ad7d5f7a358db7bc2..eb1b29e032c638d1b7b5d39899573a0c6db55ba5 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-GNU-4.9.3-2.25.eb @@ -20,7 +20,7 @@ builddependencies = [('Autotools', '20150215')] preconfigopts = './autogen.sh && ' sanity_check_paths = { - 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], 'dirs': ['share/man', 'include'] } diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-iccifort-2015.3.187-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-iccifort-2015.3.187-GNU-4.9.3-2.25.eb index 1651c58510a221152b9407d3697cb609fac621a2..1d4c3067fd6bd1bdb5d2ec403ca9a19da3b947b0 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.10-iccifort-2015.3.187-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.10-iccifort-2015.3.187-GNU-4.9.3-2.25.eb @@ -20,7 +20,7 @@ builddependencies = [('Autotools', '20150215', '', ('GNU', '4.9.3-2.25'))] preconfigopts = './autogen.sh && ' sanity_check_paths = { - 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], 'dirs': ['share/man', 'include'] } diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..cee677dd4c082f90405fbb77bc310e0f27e40945 --- /dev/null +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3-2.25.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'numactl' +version = '2.0.11' + +homepage = 'http://oss.sgi.com/projects/libnuma/' +description = """The numactl program allows you to run your application program on specific cpu's and memory nodes. + It does this by supplying a NUMA memory policy to the operating system before running your program. + The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.""" + +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} + +source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] +sources = [SOURCE_TAR_GZ] + +checksums = ['d3bc88b7ddb9f06d60898f4816ae9127'] + +sanity_check_paths = { + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3.eb index 65478cc919d5ca6d615a15a10057959456d04e97..a7dc26e7feee963adbcf838bbf97343af122d0cc 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.11-GCC-4.9.3.eb @@ -16,7 +16,7 @@ source_urls = ['ftp://oss.sgi.com/www/projects/libnuma/download/'] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], 'dirs': ['share/man', 'include'] } diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goalf-1.1.0-no-OFED.eb index dbb1640bc1e95a52038124672a109739d4a32524..64784ac871ac80f0b335496db87df36f358ff77d 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goalf-1.1.0-no-OFED.eb @@ -17,9 +17,8 @@ skipsteps = ['configure'] installopts = "PREFIX=%(installdir)s libdir='${prefix}/lib'" sanity_check_paths = { - 'files': ['bin/numactl', 'bin/numastat', - 'lib/libnuma.so', 'lib/libnuma.a'], - 'dirs': ['share/man', 'include'] - } + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb index 9dab9a78e3353b9fdbca857a24a161a3395783b5..fdf229d038b461a1da14debe87036624ef5d5056 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-goolf-1.4.10.eb @@ -17,9 +17,8 @@ skipsteps = ['configure'] installopts = "PREFIX=%(installdir)s libdir='${prefix}/lib'" sanity_check_paths = { - 'files': ['bin/numactl', 'bin/numastat', - 'lib/libnuma.so', 'lib/libnuma.a'], - 'dirs': ['share/man', 'include'] - } + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-4.1.13.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-4.1.13.eb index 38e2472e6b600d62380ba8c3816aabdb3bc66034..cc76df6c60003bbefc8968685cd4c4702f28d6ad 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-4.1.13.eb @@ -17,10 +17,8 @@ skipsteps = ['configure'] installopts = "PREFIX=%(installdir)s libdir='${prefix}/lib'" sanity_check_paths = { - 'files': ['bin/numactl', 'bin/numastat', - 'lib/libnuma.so', 'lib/libnuma.a'], - 'dirs': ['share/man', 'include'] - } + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb index 8d379ac5acdacf1449e5b3b2214f267156d3c39d..53c7670b082fd657da22c87e9ed0f0d2b4a80a7f 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.8-ictce-5.3.0.eb @@ -18,10 +18,8 @@ skipsteps = ['configure'] installopts = "PREFIX=%(installdir)s libdir='${prefix}/lib'" sanity_check_paths = { - 'files': ['bin/numactl', 'bin/numastat', - 'lib/libnuma.so', 'lib/libnuma.a'], - 'dirs': ['share/man', 'include'] - } + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], + 'dirs': ['share/man', 'include'] +} moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.3.eb b/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.3.eb index 4b76914247c8bd7d2748395d023de8cd86d05965..d58d803fc7bc0616a276b40e64fb9adf9c223c69 100644 --- a/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/n/numactl/numactl-2.0.9-GCC-4.8.3.eb @@ -17,7 +17,7 @@ skipsteps = ['configure'] installopts = "PREFIX=%(installdir)s libdir='${prefix}/lib'" sanity_check_paths = { - 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.so', 'lib/libnuma.a'], + 'files': ['bin/numactl', 'bin/numastat', 'lib/libnuma.%s' % SHLIB_EXT, 'lib/libnuma.a'], 'dirs': ['share/man', 'include'] } diff --git a/easybuild/easyconfigs/n/numba/llvmlite-0.8.0_no-static-libstc++.patch b/easybuild/easyconfigs/n/numba/llvmlite-0.8.0_no-static-libstc++.patch new file mode 100644 index 0000000000000000000000000000000000000000..c257a9a2fa08e2fb0f2daf0c5f334876bb7e40e8 --- /dev/null +++ b/easybuild/easyconfigs/n/numba/llvmlite-0.8.0_no-static-libstc++.patch @@ -0,0 +1,17 @@ +don't use -static-libstdc++, causing problems like "glibc detected *** python: free(): invalid pointer" +cfr. https://github.com/numba/llvmlite/issues/93 +author: Kenneth Hoste (HPC-UGent) +diff -ru llvmlite-0.8.0.orig/ffi/Makefile.linux llvmlite-0.8.0/ffi/Makefile.linux +--- llvmlite-0.8.0.orig/ffi/Makefile.linux 2015-10-23 17:19:27.000000000 +0200 ++++ llvmlite-0.8.0/ffi/Makefile.linux 2016-01-08 15:55:27.138306000 +0100 +@@ -14,9 +14,7 @@ + all: $(OUTPUT) + + $(OUTPUT): $(SRC) +- # static-libstdc++ avoids runtime dependencies on a +- # particular libstdc++ version. +- $(CXX) -static-libstdc++ -shared $(CXXFLAGS) $(SRC) -o $(OUTPUT) $(LDFLAGS) $(LIBS) ++ $(CXX) -shared $(CXXFLAGS) $(SRC) -o $(OUTPUT) $(LDFLAGS) $(LIBS) + + + clean: diff --git a/easybuild/easyconfigs/n/numba/numba-0.22.1-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/n/numba/numba-0.22.1-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..402bb7ef969fdd459475ac8118a497a77ba559e3 --- /dev/null +++ b/easybuild/easyconfigs/n/numba/numba-0.22.1-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,44 @@ +easyblock = 'Bundle' + +name = 'numba' +version = '0.22.1' + +homepage = 'http://numba.pydata.org/' +description = """Numba is an Open Source NumPy-aware optimizing compiler for Python sponsored by Continuum Analytics, + Inc. It uses the remarkable LLVM compiler infrastructure to compile Python syntax to machine code.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' +exts_filter = ('python -c "import %(ext_name)s"', '') + +pyver = '2.7.11' +versionsuffix = '-Python-%s' % pyver +dependencies = [ + ('Python', pyver), + ('LLVM', '3.6.2'), +] + +exts_list = [ + ('llvmlite', '0.8.0', { + 'source_urls': ['https://pypi.python.org/packages/source/l/llvmlite/'], + 'patches': ['llvmlite-0.8.0_no-static-libstc++.patch'], + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/n/numba/'], + }), +] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +pyshortver = '.'.join(pyver.split('.')[:2]) +sanity_check_paths = { + 'files': ['bin/numba', 'bin/pycc'], + 'dirs': ['lib/python%s/site-packages' % pyshortver], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%s/site-packages' % pyshortver]} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/n/numexpr/numexpr-2.0.1-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/n/numexpr/numexpr-2.0.1-ictce-4.1.13-Python-2.7.3.eb index 4606d670d05b5a88f418c7248931b92837505b8d..b59dd7b4f3f89db7b250251393124d3e06306c7d 100644 --- a/easybuild/easyconfigs/n/numexpr/numexpr-2.0.1-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/n/numexpr/numexpr-2.0.1-ictce-4.1.13-Python-2.7.3.eb @@ -21,14 +21,14 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % (python, pythonver) dependencies = [ - (python, pythonver), - ('HDF5', '1.8.10', '-gpfs') - ] + (python, pythonver), + ('HDF5', '1.8.10', '-gpfs') +] eggname = '%s-%s-py%s-linux-x86_64.egg' % (name, version, pythonshortver) sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%s/site-packages/%s/%s' % (pythonshortver, eggname, name)] - } + 'files': [], + 'dirs': ['lib/python%s/site-packages/%s/%s' % (pythonshortver, eggname, name)] +} moduleclass = 'math' diff --git a/easybuild/easyconfigs/n/numexpr/numexpr-2.0.1-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/n/numexpr/numexpr-2.0.1-ictce-5.3.0-Python-2.7.3.eb index 23dc125463021077a2cfff1002ee314471a575f8..0f252858359e4432fd80c6b4a681fbb48793f9df 100644 --- a/easybuild/easyconfigs/n/numexpr/numexpr-2.0.1-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/n/numexpr/numexpr-2.0.1-ictce-5.3.0-Python-2.7.3.eb @@ -21,14 +21,14 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % (python, pythonver) dependencies = [ - (python, pythonver), - ('HDF5', '1.8.10', '-gpfs') - ] + (python, pythonver), + ('HDF5', '1.8.10', '-gpfs') +] eggname = '%s-%s-py%s-linux-x86_64.egg' % (name, version, pythonshortver) sanity_check_paths = { - 'files': [], - 'dirs': ['lib/python%s/site-packages/%s/%s' % (pythonshortver, eggname, name)] - } + 'files': [], + 'dirs': ['lib/python%s/site-packages/%s/%s' % (pythonshortver, eggname, name)] +} moduleclass = 'math' diff --git a/easybuild/easyconfigs/n/numexpr/numexpr-2.4.6-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/n/numexpr/numexpr-2.4.6-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..a1e1df7d77f9a9ad2e225db2b41280dd22182ad7 --- /dev/null +++ b/easybuild/easyconfigs/n/numexpr/numexpr-2.4.6-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,33 @@ +easyblock = "PythonPackage" + +name = 'numexpr' +version = '2.4.6' + +homepage = 'http://code.google.com/p/numexpr/' +description = """The numexpr package evaluates multiple-operator array expressions many times faster than NumPy can. + It accepts the expression as a string, analyzes it, rewrites it more efficiently, and compiles it on the fly into + code for its internal virtual machine (VM). Due to its integrated just-in-time (JIT) compiler, it does not require a + compiler at runtime.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'usempi': True} + +source_urls = ['https://github.com/pydata/numexpr/archive/'] +sources = ['v%(version)s.tar.gz'] + +python = 'Python' +pythonver = '2.7.10' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +dependencies = [ + (python, pythonver), + ('numpy', '1.10.4', versionsuffix), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages' % pythonshortver], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.10.1-foss-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/n/numpy/numpy-1.10.1-foss-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..9160880ad170530dffd3a773f4f3ae6fd21136e9 --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.10.1-foss-2015b-Python-2.7.10.eb @@ -0,0 +1,26 @@ +name = 'numpy' +version = '1.10.1' + +homepage = 'http://www.numpy.org' +description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: + a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran + code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, + NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be + defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCE_TAR_GZ] + +patches = ['numpy-1.8.0-mkl.patch'] + +python = 'Python' +pyver = '2.7.10' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.10.1-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/n/numpy/numpy-1.10.1-intel-2015b-Python-2.7.10.eb index 49bbddc67863bbf2b14572e4110e06412a897b5e..8d802d968f5453d2ea94bce0505a2e014075b426 100644 --- a/easybuild/easyconfigs/n/numpy/numpy-1.10.1-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/n/numpy/numpy-1.10.1-intel-2015b-Python-2.7.10.eb @@ -13,7 +13,10 @@ toolchain = {'name': 'intel', 'version': '2015b'} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCE_TAR_GZ] -patches = ['numpy-1.8.0-mkl.patch'] +patches = [ + 'numpy-1.8.0-mkl.patch', + 'numpy-%(version)s-sse42.patch', +] python = 'Python' pyver = '2.7.10' diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.10.1-sse42.patch b/easybuild/easyconfigs/n/numpy/numpy-1.10.1-sse42.patch new file mode 100644 index 0000000000000000000000000000000000000000..60cdd9673149e148738b4937babc6eff138f2645 --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.10.1-sse42.patch @@ -0,0 +1,25 @@ +#Remove hard coded -xSSE4.2 compilation flag for Intel compilers (add the usual -xHOST) +#compilation would fail on non-SSE4.2 CPUs, and for further CPUs/compilers it would restrict the generated code to SSE4.2 +# February 19th, 2016 by B. Hajgato - Free University Brussels (VUB) +--- numpy/distutils/intelccompiler.py.orig 2015-10-12 16:29:01.000000000 +0200 ++++ numpy/distutils/intelccompiler.py 2016-02-23 11:31:50.350422787 +0100 +@@ -49,7 +49,7 @@ + def __init__(self, verbose=0, dry_run=0, force=0): + UnixCCompiler.__init__(self, verbose, dry_run, force) + self.cc_exe = ('icc -m64 -fPIC -fp-model strict -O3 ' +- '-fomit-frame-pointer -openmp -xSSE4.2') ++ '-fomit-frame-pointer -openmp -xHOST') + compiler = self.cc_exe + self.set_executables(compiler=compiler, + compiler_so=compiler, +--- numpy/distutils/fcompiler/intel.py.orig 2015-10-12 16:29:01.000000000 +0200 ++++ numpy/distutils/fcompiler/intel.py 2016-02-23 11:31:50.350422787 +0100 +@@ -123,7 +123,7 @@ + return ['-openmp -fp-model strict'] + + def get_flags_arch(self): +- return ['-xSSE4.2'] ++ return ['-xHOST'] + + # Is there no difference in the version string between the above compilers + # and the Visual compilers? diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.10.4-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/n/numpy/numpy-1.10.4-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..a7d1f53ad328c94080f3045fa67fafdea52dc541 --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.10.4-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,29 @@ +name = 'numpy' +version = '1.10.4' + +homepage = 'http://www.numpy.org' +description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: + a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran + code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, + NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be + defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCE_TAR_GZ] + +patches = [ + 'numpy-1.8.0-mkl.patch', + 'numpy-%(version)s-sse42.patch', +] + +python = 'Python' +pyver = '2.7.10' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.10.4-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/n/numpy/numpy-1.10.4-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..62945ed9381c78133fe5415e31836427dab50bab --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.10.4-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,26 @@ +name = 'numpy' +version = '1.10.4' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.numpy.org' +description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: + a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortran + code, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses, + NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be + defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCE_TAR_GZ] + +patches = [ + 'numpy-1.8.0-mkl.patch', + 'numpy-%(version)s-sse42.patch', +] + +dependencies = [ + ('Python', '2.7.11'), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.10.4-sse42.patch b/easybuild/easyconfigs/n/numpy/numpy-1.10.4-sse42.patch new file mode 100644 index 0000000000000000000000000000000000000000..75ffeaa0d5939995de089410a1dd77d8bce4e74c --- /dev/null +++ b/easybuild/easyconfigs/n/numpy/numpy-1.10.4-sse42.patch @@ -0,0 +1,25 @@ +#Remove hard coded -xSSE4.2 compilation flag for Intel compilers (add the usual -xHOST) +#compilation would fail on non-SSE4.2 CPUs, and for further CPUs/compilers it would restrict the generated code to SSE4.2 +# February 19th, 2016 by B. Hajgato - Free University Brussels (VUB) +--- ./numpy/distutils/intelccompiler.py.orig 2016-01-06 22:07:54.000000000 +0100 ++++ ./numpy/distutils/intelccompiler.py 2016-02-19 15:07:00.438235792 +0100 +@@ -54,7 +54,7 @@ + def __init__(self, verbose=0, dry_run=0, force=0): + UnixCCompiler.__init__(self, verbose, dry_run, force) + self.cc_exe = ('icc -m64 -fPIC -fp-model strict -O3 ' +- '-fomit-frame-pointer -openmp -xSSE4.2') ++ '-fomit-frame-pointer -openmp -xHOST') + compiler = self.cc_exe + if platform.system() == 'Darwin': + shared_flag = '-Wl,-undefined,dynamic_lookup' +--- ./numpy/distutils/fcompiler/intel.py.orig 2016-01-07 03:16:25.000000000 +0100 ++++ ./numpy/distutils/fcompiler/intel.py 2016-02-19 15:07:16.424220745 +0100 +@@ -123,7 +123,7 @@ + return ['-openmp -fp-model strict'] + + def get_flags_arch(self): +- return ['-xSSE4.2'] ++ return ['-xHOST'] + + # Is there no difference in the version string between the above compilers + # and the Visual compilers? diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.6.2-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/n/numpy/numpy-1.6.2-ictce-4.0.6-Python-2.7.3.eb index 32146789ef56c7259b982ca6df06b2c32ab2a6d2..cd51989f63b36dee3f41bb2b2a54cb734a6f87d5 100644 --- a/easybuild/easyconfigs/n/numpy/numpy-1.6.2-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/n/numpy/numpy-1.6.2-ictce-4.0.6-Python-2.7.3.eb @@ -12,7 +12,7 @@ toolchain = {'name': 'ictce', 'version': '4.0.6'} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCE_TAR_GZ] - + patches = ['numpy-1.6.2_distutils_multiple-lib-dirs.patch'] python = 'Python' diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.6.2-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/n/numpy/numpy-1.6.2-ictce-4.1.13-Python-2.7.3.eb index 6f22931653ff77f7463ceefd8918fbaeefc653aa..0c0f8292031fbd09d08223f6f69d0fac6286214c 100644 --- a/easybuild/easyconfigs/n/numpy/numpy-1.6.2-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/n/numpy/numpy-1.6.2-ictce-4.1.13-Python-2.7.3.eb @@ -12,7 +12,7 @@ toolchain = {'name': 'ictce', 'version': '4.1.13'} source_urls = [('http://sourceforge.net/projects/numpy/files/NumPy/%(version)s', 'download')] sources = [SOURCE_TAR_GZ] - + patches = ['numpy-%(version)s_distutils_multiple-lib-dirs.patch'] python = 'Python' diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.6.2-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/n/numpy/numpy-1.6.2-ictce-5.3.0-Python-2.7.3.eb index 0ea594ac42a3d9419b0a7fab6ff381fde910779c..72587faf5d80aca3b8f7fa2e7790f9cfef5123a0 100644 --- a/easybuild/easyconfigs/n/numpy/numpy-1.6.2-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/n/numpy/numpy-1.6.2-ictce-5.3.0-Python-2.7.3.eb @@ -12,7 +12,7 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCE_TAR_GZ] - + patches = ['numpy-1.6.2_distutils_multiple-lib-dirs.patch'] python = 'Python' diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.7.1-ictce-4.1.13-Python-2.7.5.eb b/easybuild/easyconfigs/n/numpy/numpy-1.7.1-ictce-4.1.13-Python-2.7.5.eb index 722f3cab2c520d2b05087573d89f97ced0df6d6a..9211de2ef5e8b32ab0ecf494dc261a3bad3f9158 100644 --- a/easybuild/easyconfigs/n/numpy/numpy-1.7.1-ictce-4.1.13-Python-2.7.5.eb +++ b/easybuild/easyconfigs/n/numpy/numpy-1.7.1-ictce-4.1.13-Python-2.7.5.eb @@ -14,7 +14,7 @@ source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCE_TAR_GZ] patches = ['numpy-1.7.1_distutils_multiple-lib-dirs.patch'] - + python = 'Python' pyver = '2.7.5' versionsuffix = '-%s-%s' % (python, pyver) diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.1.29-Python-2.7.9.eb b/easybuild/easyconfigs/n/numpy/numpy-1.8.2-intel-2015b-Python-2.7.11.eb similarity index 86% rename from easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.1.29-Python-2.7.9.eb rename to easybuild/easyconfigs/n/numpy/numpy-1.8.2-intel-2015b-Python-2.7.11.eb index 49b27458ee8f4f02c9bb19fde91697dc9b5e5456..2530e184df088c5bab0d9f9a2cb1821968c5a3f1 100644 --- a/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.1.29-Python-2.7.9.eb +++ b/easybuild/easyconfigs/n/numpy/numpy-1.8.2-intel-2015b-Python-2.7.11.eb @@ -1,5 +1,5 @@ name = 'numpy' -version = '1.9.2' +version = '1.8.2' homepage = 'http://www.numpy.org' description = """NumPy is the fundamental package for scientific computing with Python. It contains among other things: @@ -8,15 +8,15 @@ description = """NumPy is the fundamental package for scientific computing with NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchain = {'name': 'intel', 'version': '2015b'} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCE_TAR_GZ] -patches = ['numpy-1.8.0-mkl.patch'] +patches = ['numpy-1.8.1-mkl.patch'] python = 'Python' -pyver = '2.7.9' +pyver = '2.7.11' versionsuffix = '-%s-%s' % (python, pyver) dependencies = [ diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.25-Python-2.7.9.eb b/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-2015.06-XC-Python-2.7.9.eb similarity index 93% rename from easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.25-Python-2.7.9.eb rename to easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-2015.06-XC-Python-2.7.9.eb index fa04b4229933eef7eea6d6d85729bab4be9198ef..09f3884a76c520b9ebb4a473db0936b3ed05c11b 100644 --- a/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.25-Python-2.7.9.eb +++ b/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-2015.06-XC-Python-2.7.9.eb @@ -8,7 +8,7 @@ description = """NumPy is the fundamental package for scientific computing with NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.40-Python-2.7.9.eb b/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-2015.11-XC-Python-2.7.9.eb similarity index 93% rename from easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.40-Python-2.7.9.eb rename to easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-2015.11-XC-Python-2.7.9.eb index 7d81f886bcbaf504db2b2a66bfd01e2948cb5696..91375139ee4e2e2ac2860b84be20cb5b39489305 100644 --- a/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-5.2.40-Python-2.7.9.eb +++ b/easybuild/easyconfigs/n/numpy/numpy-1.9.2-CrayGNU-2015.11-XC-Python-2.7.9.eb @@ -8,7 +8,7 @@ description = """NumPy is the fundamental package for scientific computing with NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be defined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb index 44fd054d5f92696327828d498390999e6c3166df..0a78e38ade3221c55f36951e39e6afe42efefbfe 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-goolf-1.4.10.eb @@ -6,11 +6,8 @@ # License:: MIT/GPL # $Id$ ## - -easyblock = 'ConfigureMake' - -name = "OCaml" -version = "4.01.0" +name = 'OCaml' +version = '4.01.0' homepage = 'http://ocaml.org/' description = """OCaml is a general purpose industrial-strength programming language @@ -18,24 +15,34 @@ description = """OCaml is a general purpose industrial-strength programming lang it benefits from one of the most advanced type systems and supports functional, imperative and object-oriented styles of programming.""" -toolchain = {'version': '1.4.10', 'name': 'goolf'} - -sources = [SOURCELOWER_TAR_GZ] -sourcedir = name.lower() + '-' + '.'.join(version.split('.')[0:-1]) -source_urls = ['http://caml.inria.fr/pub/distrib/%s' % sourcedir] - -builddependencies = [('Autoconf', '2.69')] -dependencies = [('ncurses', '5.9')] - -prefix_opt = "-prefix " -buildopts = "world.opt" +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +opam_ver = '1.2.2' +source_urls = [ + 'http://caml.inria.fr/pub/distrib/ocaml-%s' % '.'.join(version.split('.')[:2]), + 'https://github.com/ocaml/opam/releases/download/%s' % opam_ver, +] +sources = [ + SOURCELOWER_TAR_GZ, + 'opam-full-%s.tar.gz' % opam_ver, +] + +builddependencies = [('Autotools', '20150215', '', ('GCC', '4.7.2'))] +dependencies = [ + ('ncurses', '5.9'), + ('libreadline', '6.3'), + ('GSL', '1.16'), +] # parallel build tends to break parallel = 1 -sanity_check_paths = { - 'files': ["bin/ocaml", "bin/ocamlc"], - 'dirs': [] -} +# handled by OPAM, order matters! +exts_list = [ + ('ocamlfind', '1.5.5'), + ('batteries', '2.3.1'), + ('ocaml+twt', '0.94.0'), + ('gsl', '1.18.5'), +] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-ictce-5.5.0.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..eb591f01b3856b65130b88688d4d56f92efad8cd --- /dev/null +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0-ictce-5.5.0.eb @@ -0,0 +1,50 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +## +name = 'OCaml' +version = '4.01.0' + +homepage = 'http://ocaml.org/' +description = """OCaml is a general purpose industrial-strength programming language + with an emphasis on expressiveness and safety. Developed for more than 20 years at Inria + it benefits from one of the most advanced type systems and supports functional, + imperative and object-oriented styles of programming.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +opam_ver = '1.2.2' +source_urls = [ + 'http://caml.inria.fr/pub/distrib/ocaml-%s' % '.'.join(version.split('.')[:2]), + 'https://github.com/ocaml/opam/releases/download/%s' % opam_ver, +] +sources = [ + SOURCELOWER_TAR_GZ, + 'opam-full-%s.tar.gz' % opam_ver, +] + +patches = ['OCaml-%(version)s_icc-fixes.patch'] + +builddependencies = [('Autotools', '20150215')] +dependencies = [ + ('ncurses', '5.9'), + ('libreadline', '6.2'), + ('GSL', '1.16'), +] + +# parallel build tends to break +parallel = 1 + +# handled by OPAM, order matters! +exts_list = [ + ('ocamlfind', '1.5.5'), + ('batteries', '2.3.1'), + ('ocaml+twt', '0.94.0'), + ('gsl', '1.18.5'), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0_icc-fixes.patch b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0_icc-fixes.patch new file mode 100644 index 0000000000000000000000000000000000000000..3b6ab1f097559b8b2514a1b71ada6d5e6b610026 --- /dev/null +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.01.0_icc-fixes.patch @@ -0,0 +1,22 @@ +fix for Fatal error: exception Invalid_argument("gettimeofday not implemented") +author: Kenneth Hoste (HPC-UGent) +--- configure.orig 2015-10-06 10:19:12.763826416 +0200 ++++ configure 2015-10-06 10:19:56.005026703 +0200 +@@ -1015,7 +1015,7 @@ + fi + + has_select=no +-if sh ./hasgot select && \ ++if cc="$cc -wd165" sh ./hasgot select && \ + sh ./hasgot -i sys/types.h $select_include -t fd_set ; then + echo "select() found." + echo "#define HAS_SELECT" >> s.h +@@ -1084,7 +1084,7 @@ + fi + + has_gettimeofday=no +-if sh ./hasgot gettimeofday; then ++if cc="$cc -wd165" sh ./hasgot gettimeofday; then + echo "gettimeofday() found." + echo "#define HAS_GETTIMEOFDAY" >> s.h + has_gettimeofday="yes" diff --git a/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2015a.eb b/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2015a.eb index ed1f2013570768df34a002661d7fb30a9e4f3645..12dba48bf0852df7c4f031968e2f5d00248d13a4 100644 --- a/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2015a.eb +++ b/easybuild/easyconfigs/o/OCaml/OCaml-4.02.3-foss-2015a.eb @@ -17,10 +17,9 @@ description = """OCaml is a general purpose industrial-strength programming lang toolchain = {'name': 'foss', 'version': '2015a'} -ocaml_sourcedir = name.lower() + '-' + '.'.join(version.split('.')[0:-1]) opam_ver = '1.2.2' source_urls = [ - 'http://caml.inria.fr/pub/distrib/%s' % ocaml_sourcedir, + 'http://caml.inria.fr/pub/distrib/ocaml-%s' % '.'.join(version.split('.')[:2]), 'https://github.com/ocaml/opam/releases/download/%s' % opam_ver, ] sources = [ diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-2_9_1-linux_x86-64.eb b/easybuild/easyconfigs/o/ORCA/ORCA-2_9_1-linux_x86-64.eb index 76be1035a71a1775d6ba7874dd07b9869c018def..d28d21b593dc90a3cf78415d69e254bd7b2ad63a 100644 --- a/easybuild/easyconfigs/o/ORCA/ORCA-2_9_1-linux_x86-64.eb +++ b/easybuild/easyconfigs/o/ORCA/ORCA-2_9_1-linux_x86-64.eb @@ -10,22 +10,22 @@ description = """ORCA is a flexible, efficient and easy-to-use general purpose t and multireference correlated ab initio methods. It can also treat environmental and relativistic effects.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['%%(namelower)s_%s_%s.tbz' % (version.split('-')[0], '-'.join(version.split('-')[1:]))] dependencies = [('OpenMPI', '1.4.5', '-no-OFED', ('GCC', '4.6.3'))] sanity_check_paths = { - 'files': ['orca_%s%s' % (x,y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', - 'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc', - 'rocis', 'scf', 'scfgrad', 'soc'] - for y in ["", "_mpi"]] + \ - ['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib', - 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', + 'files': ['orca_%s%s' % (x, y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', + 'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc', + 'rocis', 'scf', 'scfgrad', 'soc'] + for y in ["", "_mpi"]] + + ['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib', + 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', 'md', 'mergefrag', 'ndoint', 'numfreq', 'plot', - 'pltvib', 'pop', 'rel', 'vib', 'vpot']] + \ - ['orca', 'otool_cosmo'], + 'pltvib', 'pop', 'rel', 'vib', 'vpot']] + + ['orca', 'otool_cosmo'], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64_openmpi_165.eb b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64_openmpi_165.eb index 3b66a977f733d9c5ee518cb229bf4a32f2f72920..81bfa462d1eca20b183384c4ca5e4bada13e60ac 100644 --- a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64_openmpi_165.eb +++ b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_0-linux_x86-64_openmpi_165.eb @@ -11,22 +11,22 @@ description = """ORCA is a flexible, efficient and easy-to-use general purpose t and multireference correlated ab initio methods. It can also treat environmental and relativistic effects.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['%%(namelower)s_%s_%s.tbz' % (version.split('-')[0], '-'.join(version.split('-')[1:]))] dependencies = [('OpenMPI', openmpiversion, '-GCC-4.7.2')] sanity_check_paths = { - 'files': ['orca_%s%s' % (x,y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', - 'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc', - 'rocis', 'scf', 'scfgrad', 'soc'] - for y in ["", "_mpi"]] + \ - ['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib', - 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', + 'files': ['orca_%s%s' % (x, y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', + 'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc', + 'rocis', 'scf', 'scfgrad', 'soc'] + for y in ["", "_mpi"]] + + ['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib', + 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', 'md', 'mergefrag', 'ndoint', 'numfreq', 'plot', - 'pltvib', 'pop', 'rel', 'vib', 'vpot']] + \ - ['orca', 'otool_cosmo'], + 'pltvib', 'pop', 'rel', 'vib', 'vpot']] + + ['orca', 'otool_cosmo'], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64-OpenMPI-1.6.5.eb b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64-OpenMPI-1.6.5.eb index c63048d89b439b8208e9070e7e8060f9300dc962..3d3c83269cd51ee69b92cb1d5af23af8a4835483 100644 --- a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64-OpenMPI-1.6.5.eb +++ b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64-OpenMPI-1.6.5.eb @@ -13,22 +13,22 @@ description = """ORCA is a flexible, efficient and easy-to-use general purpose t and multireference correlated ab initio methods. It can also treat environmental and relativistic effects.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['%%(namelower)s_%s_%s.tbz' % (version.split('-')[0], '-'.join(version.split('-')[1:]))] dependencies = [('OpenMPI', openmpiversion, '-GCC-4.7.2')] sanity_check_paths = { - 'files': ['orca_%s%s' % (x,y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', - 'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc', - 'rocis', 'scf', 'scfgrad', 'soc'] - for y in ["", "_mpi"]] + \ - ['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib', - 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', + 'files': ['orca_%s%s' % (x, y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', + 'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc', + 'rocis', 'scf', 'scfgrad', 'soc'] + for y in ["", "_mpi"]] + + ['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib', + 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', 'md', 'mergefrag', 'ndoint', 'numfreq', 'plot', - 'pltvib', 'pop', 'rel', 'vib', 'vpot']] + \ - ['orca', 'otool_cosmo'], + 'pltvib', 'pop', 'rel', 'vib', 'vpot']] + + ['orca', 'otool_cosmo'], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64-OpenMPI-1.8.1.eb b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64-OpenMPI-1.8.1.eb index 5a28bbce0d282f0b23bccc0668241df3f270718b..b51b51028cfd5ab1bc2fe7222c11239210eaf42d 100644 --- a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64-OpenMPI-1.8.1.eb +++ b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_2-linux_x86-64-OpenMPI-1.8.1.eb @@ -13,22 +13,22 @@ description = """ORCA is a flexible, efficient and easy-to-use general purpose t and multireference correlated ab initio methods. It can also treat environmental and relativistic effects.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['%%(namelower)s_%s_%s.tbz' % (version.split('-')[0], '-'.join(version.split('-')[1:]))] dependencies = [('OpenMPI', openmpiversion, '-GCC-4.8.3')] sanity_check_paths = { - 'files': ['orca_%s%s' % (x,y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', - 'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc', - 'rocis', 'scf', 'scfgrad', 'soc'] - for y in ["", "_mpi"]] + \ - ['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib', - 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', + 'files': ['orca_%s%s' % (x, y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', + 'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc', + 'rocis', 'scf', 'scfgrad', 'soc'] + for y in ["", "_mpi"]] + + ['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib', + 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', 'md', 'mergefrag', 'ndoint', 'numfreq', 'plot', - 'pltvib', 'pop', 'rel', 'vib', 'vpot']] + \ - ['orca', 'otool_cosmo'], + 'pltvib', 'pop', 'rel', 'vib', 'vpot']] + + ['orca', 'otool_cosmo'], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_3-linux_x86-64-OpenMPI-1.6.5.eb b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_3-linux_x86-64-OpenMPI-1.6.5.eb index b63bd53de93fbc669e38bd893ccfd8b25f1323ed..1c8c6b0dafd995db73a67bf078b36b24a6e1561b 100644 --- a/easybuild/easyconfigs/o/ORCA/ORCA-3_0_3-linux_x86-64-OpenMPI-1.6.5.eb +++ b/easybuild/easyconfigs/o/ORCA/ORCA-3_0_3-linux_x86-64-OpenMPI-1.6.5.eb @@ -13,22 +13,22 @@ description = """ORCA is a flexible, efficient and easy-to-use general purpose t and multireference correlated ab initio methods. It can also treat environmental and relativistic effects.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} sources = ['%%(namelower)s_%s_%s.tbz' % (version.split('-')[0], '-'.join(version.split('-')[1:]))] dependencies = [('OpenMPI', openmpiversion, '-GCC-4.7.2')] sanity_check_paths = { - 'files': ['orca_%s%s' % (x,y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', - 'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc', - 'rocis', 'scf', 'scfgrad', 'soc'] - for y in ["", "_mpi"]] + \ - ['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib', - 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', + 'files': ['orca_%s%s' % (x, y) for x in ['anoint', 'casscf', 'cis', 'cleanup', 'cpscf', + 'eprnmr', 'gtoint', 'mdci', 'mp2', 'mrci', 'pc', + 'rocis', 'scf', 'scfgrad', 'soc'] + for y in ["", "_mpi"]] + + ['orca_%s' % x for x in ['2mkl', 'asa', 'chelpg', 'ciprep', 'eca', 'ecplib', + 'euler', 'fci', 'fitpes', 'gstep', 'loc', 'mapspc', 'md', 'mergefrag', 'ndoint', 'numfreq', 'plot', - 'pltvib', 'pop', 'rel', 'vib', 'vpot']] + \ - ['orca', 'otool_cosmo'], + 'pltvib', 'pop', 'rel', 'vib', 'vpot']] + + ['orca', 'otool_cosmo'], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb index bc720f2ad434687014584ce4e4e7e8a28b6fab6f..d34174340c21b01fdcfc7a12d2c39a51e37adeba 100644 --- a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-goolf-1.4.10.eb @@ -33,9 +33,9 @@ source_urls = [ # listed make targets exclude 'doc' on purpose buildopts = ['VELVET_DIR=../velvet_%s cleanobj velvet oases' % velvetver] -files_to_copy = [(["oases"],'bin'), "data", "scripts", "src", "doc", "LICENSE.txt", "README.txt"] +files_to_copy = [(["oases"], 'bin'), "data", "scripts", "src", "doc", "LICENSE.txt", "README.txt"] -sanity_check_paths={ +sanity_check_paths = { 'files': ["bin/oases", "LICENSE.txt", "README.txt"], 'dirs': ["data", "scripts", "src", "doc"] } diff --git a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb index 6954627e469812ecc641eb7ab12abdd5ec1b851e..c408bf08bd6844364be244d7304ceb7704e61978 100644 --- a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-ictce-5.3.0.eb @@ -33,9 +33,9 @@ source_urls = [ # listed make targets exclude 'doc' on purpose buildopts = ['VELVET_DIR=../velvet_%s cleanobj velvet oases' % velvetver] -files_to_copy = [(["oases"],'bin'), "data", "scripts", "src", "doc", "LICENSE.txt", "README.txt"] +files_to_copy = [(["oases"], 'bin'), "data", "scripts", "src", "doc", "LICENSE.txt", "README.txt"] -sanity_check_paths={ +sanity_check_paths = { 'files': ["bin/oases", "LICENSE.txt", "README.txt"], 'dirs': ["data", "scripts", "src", "doc"] } diff --git a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-intel-2015a.eb b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-intel-2015a.eb index 9c657fda4a8d08e46f554b1283952fcbd0f96145..ed69d393e309d9aaedf30c6b04683fb8df2a1e77 100644 --- a/easybuild/easyconfigs/o/Oases/Oases-0.2.08-intel-2015a.eb +++ b/easybuild/easyconfigs/o/Oases/Oases-0.2.08-intel-2015a.eb @@ -36,7 +36,7 @@ parallel = 1 files_to_copy = [(["oases"], 'bin'), "data", "scripts", "src", "doc", "LICENSE.txt", "README.txt"] -sanity_check_paths={ +sanity_check_paths = { 'files': ["bin/oases", "LICENSE.txt", "README.txt"], 'dirs': ["data", "scripts", "src", "doc"] } diff --git a/easybuild/easyconfigs/o/Oger/Oger-1.1.3-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/o/Oger/Oger-1.1.3-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 2e5794c12dcca51af0fc204e4fa9fef11247d258..26ed184aedbdf57d354467e3f871c90d78cee4fb 100644 --- a/easybuild/easyconfigs/o/Oger/Oger-1.1.3-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/o/Oger/Oger-1.1.3-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -2,6 +2,7 @@ easyblock = "PythonPackage" name = 'Oger' version = '1.1.3' +versionsuffix = '-Python-%(pyver)s' homepage = 'http://reservoir-computing.org/organic/engine' description = """The OrGanic Environment for Reservoir computing (Oger) toolbox is a Python toolbox, released under the @@ -13,27 +14,18 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} source_urls = ['http://organic.elis.ugent.be/sites/organic.elis.ugent.be/files'] sources = [SOURCE_TAR_GZ] -python = "Python" -pythonversion = '2.7.3' -pythonshortversion = ".".join(pythonversion.split(".")[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - dependencies = [ - (python, pythonversion), - ("MDP", "3.3", versionsuffix), - ] + ('Python', '2.7.3'), + ('MDP', '3.3', versionsuffix), +] options = {'modulename': name} sanity_check_paths = { - 'files': ['lib/python2.7/site-packages/Oger/__init__.py'], - 'dirs': ['lib/python%s/site-packages/Oger/%s' % (pythonshortversion, dir) for dir in - [ - 'datasets', 'evaluation', 'examples', 'gradient', - 'nodes', 'parallel', 'tests', 'utils', - ] - ] - } + 'files': ['lib/python%(pyshortver)s/site-packages/Oger/__init__.py'], + 'dirs': ['lib/python%%(pyshortver)s/site-packages/Oger/%s' % d for d in ['datasets', 'evaluation', 'examples', + 'gradient', 'nodes', 'parallel', + 'tests', 'utils']], +} moduleclass = 'data' diff --git a/easybuild/easyconfigs/o/Oger/Oger-1.1.3-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/o/Oger/Oger-1.1.3-goolf-1.4.10-Python-2.7.3.eb index ca77bdf1b16a6e5879d5a9205661141fd0e2a299..ccf55821515cb2a195fb57841aff8b465451c84d 100644 --- a/easybuild/easyconfigs/o/Oger/Oger-1.1.3-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/o/Oger/Oger-1.1.3-goolf-1.4.10-Python-2.7.3.eb @@ -2,6 +2,7 @@ easyblock = "PythonPackage" name = 'Oger' version = '1.1.3' +versionsuffix = '-Python-%(pyver)s' homepage = 'http://reservoir-computing.org/organic/engine' description = """The OrGanic Environment for Reservoir computing (Oger) toolbox is a Python toolbox, released under the @@ -14,27 +15,18 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['http://organic.elis.ugent.be/sites/organic.elis.ugent.be/files'] sources = [SOURCE_TAR_GZ] -python = "Python" -pythonversion = '2.7.3' -pythonshortversion = ".".join(pythonversion.split(".")[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - dependencies = [ - (python, pythonversion), - ("MDP", "3.3", versionsuffix), - ] + ('Python', '2.7.3'), + ('MDP', '3.3', versionsuffix), +] options = {'modulename': name} sanity_check_paths = { - 'files': ['lib/python2.7/site-packages/Oger/__init__.py'], - 'dirs': ['lib/python%s/site-packages/Oger/%s' % (pythonshortversion, dir) for dir in - [ - 'datasets', 'evaluation', 'examples', 'gradient', - 'nodes', 'parallel', 'tests', 'utils', - ] - ] - } + 'files': ['lib/python%(pyshortver)s/site-packages/Oger/__init__.py'], + 'dirs': ['lib/python%%(pyshortver)s/site-packages/Oger/%s' % d for d in ['datasets', 'evaluation', 'examples', + 'gradient', 'nodes', 'parallel', + 'tests', 'utils']], +} moduleclass = 'data' diff --git a/easybuild/easyconfigs/o/Oger/Oger-1.1.3-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/o/Oger/Oger-1.1.3-ictce-4.0.6-Python-2.7.3.eb index 96fa8be93687b3b171117cf86e21e730c93cc562..0a7a7d631bafe9582d11ecd9732a373b85065b20 100644 --- a/easybuild/easyconfigs/o/Oger/Oger-1.1.3-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/o/Oger/Oger-1.1.3-ictce-4.0.6-Python-2.7.3.eb @@ -2,6 +2,7 @@ easyblock = "PythonPackage" name = 'Oger' version = '1.1.3' +versionsuffix = '-Python-%(pyver)s' homepage = 'http://reservoir-computing.org/organic/engine' description = """The OrGanic Environment for Reservoir computing (Oger) toolbox is a Python toolbox, released under the @@ -13,24 +14,18 @@ toolchain = {'name': 'ictce', 'version': '4.0.6'} source_urls = ['http://organic.elis.ugent.be/sites/organic.elis.ugent.be/files'] sources = [SOURCE_TAR_GZ] -python = "Python" -pythonversion = '2.7.3' -pythonshortversion = ".".join(pythonversion.split(".")[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - dependencies = [ - (python, pythonversion), - ("MDP", "3.3", versionsuffix), - ] + ('Python', '2.7.3'), + ('MDP', '3.3', versionsuffix), +] options = {'modulename': name} sanity_check_paths = { - 'files': ['lib/python2.7/site-packages/Oger/__init__.py'], - 'dirs': ['lib/python%s/site-packages/Oger/%s' % (pythonshortversion, dir) for dir in - ['datasets', 'evaluation', 'examples', 'gradient', 'nodes', 'parallel', 'tests', 'utils'] - ] - } + 'files': ['lib/python%(pyshortver)s/site-packages/Oger/__init__.py'], + 'dirs': ['lib/python%%(pyshortver)s/site-packages/Oger/%s' % d for d in ['datasets', 'evaluation', 'examples', + 'gradient', 'nodes', 'parallel', + 'tests', 'utils']], +} moduleclass = 'data' diff --git a/easybuild/easyconfigs/o/Oger/Oger-1.1.3-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/o/Oger/Oger-1.1.3-ictce-5.3.0-Python-2.7.3.eb index 3a51160584040a28e0fca1a69e9722b2ddb733d0..f44806a8e59e9ab4848314ecddb5d9a038d7de47 100644 --- a/easybuild/easyconfigs/o/Oger/Oger-1.1.3-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/o/Oger/Oger-1.1.3-ictce-5.3.0-Python-2.7.3.eb @@ -2,6 +2,7 @@ easyblock = "PythonPackage" name = 'Oger' version = '1.1.3' +versionsuffix = '-Python-%(pyver)s' homepage = 'http://reservoir-computing.org/organic/engine' description = """The OrGanic Environment for Reservoir computing (Oger) toolbox is a Python toolbox, released under the @@ -14,24 +15,18 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ['http://organic.elis.ugent.be/sites/organic.elis.ugent.be/files'] sources = [SOURCE_TAR_GZ] -python = "Python" -pythonversion = '2.7.3' -pythonshortversion = ".".join(pythonversion.split(".")[:-1]) - -versionsuffix = "-%s-%s" % (python, pythonversion) - dependencies = [ - (python, pythonversion), - ("MDP", "3.3", versionsuffix), - ] + ('Python', '2.7.3'), + ('MDP', '3.3', versionsuffix), +] options = {'modulename': name} sanity_check_paths = { - 'files': ['lib/python2.7/site-packages/Oger/__init__.py'], - 'dirs': ['lib/python%s/site-packages/Oger/%s' % (pythonshortversion, dir) for dir in - ['datasets', 'evaluation', 'examples', 'gradient', 'nodes', 'parallel', 'tests', 'utils'] - ] - } + 'files': ['lib/python%(pyshortver)s/site-packages/Oger/__init__.py'], + 'dirs': ['lib/python%%(pyshortver)s/site-packages/Oger/%s' % d for d in ['datasets', 'evaluation', 'examples', + 'gradient', 'nodes', 'parallel', + 'tests', 'utils']], +} moduleclass = 'data' diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb index 97ff1d323e330e13a221afd5cb6faa5007dbf5ec..3a54e8b3b2337f18c41d89a43c114b84cb34b61e 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.12-GCC-4.9.2-LAPACK-3.5.0.eb @@ -49,4 +49,3 @@ sanity_check_paths = { } moduleclass = 'numlib' - diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.8.4-LAPACK-3.5.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.8.4-LAPACK-3.5.0.eb index c678bbcc6e2e4d2e735d898dd9315f6ad50ae4e5..870b4ca0ecff56fcc0980892294d42c666c30a98 100644 --- a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.8.4-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.13-GCC-4.8.4-LAPACK-3.5.0.eb @@ -49,4 +49,3 @@ sanity_check_paths = { } moduleclass = 'numlib' - diff --git a/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0.eb b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..32dd146e23ce19679a6291af717916733094b43f --- /dev/null +++ b/easybuild/easyconfigs/o/OpenBLAS/OpenBLAS-0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0.eb @@ -0,0 +1,51 @@ +easyblock = 'ConfigureMake' + +name = 'OpenBLAS' +version = '0.2.15' + +lapackver = '3.6.0' +versionsuffix = '-LAPACK-%s' % lapackver + +homepage = 'http://xianyi.github.com/OpenBLAS/' +description = """OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.""" + +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} + +lapack_src = 'lapack-%s.tgz' % lapackver +large_src = 'large.tgz' +timing_src = 'timing.tgz' +sources = [ + 'v%(version)s.tar.gz', + lapack_src, + large_src, + timing_src, +] +source_urls = [ + # order matters, trying to download the LAPACK tarball from GitHub causes trouble + "http://www.netlib.org/lapack/", + "http://www.netlib.org/lapack/timing/", + "https://github.com/xianyi/OpenBLAS/archive/", +] + +patches = [ + (lapack_src, '.'), # copy LAPACK tarball to unpacked OpenBLAS dir + (large_src, '.'), + (timing_src, '.'), +] + +skipsteps = ['configure'] + +buildopts = 'BINARY=64 USE_THREAD=1 CC="$CC" FC="$F77" NO_AFFINITY=1' +installopts = "USE_THREAD=1 PREFIX=%(installdir)s" + +# extensive testing can be enabled by uncommenting the line below +#runtest = 'PATH=.:$PATH lapack-timing' + +sanity_check_paths = { + 'files': ['include/cblas.h', 'include/f77blas.h', 'include/lapacke_config.h', 'include/lapacke.h', + 'include/lapacke_mangling.h', 'include/lapacke_utils.h', 'include/openblas_config.h', + 'lib/libopenblas.a', 'lib/libopenblas.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014.06.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014.06.eb index 9bed0737f0cf6488b462f7443cc39df1038378dd..96d8323ca5ed2d0b90509f0767d302cf316448bf 100644 --- a/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014.06.eb +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014.06.eb @@ -32,13 +32,13 @@ javaver = '1.7.0_79' dependencies = [ (python, pythonver), ('zlib', '1.2.8'), - ('ffmpeg', '2.4'), + ('FFmpeg', '2.4'), ('libjpeg-turbo', '1.3.1'), ('libpng', '1.6.12'), ('LibTIFF', '4.0.3'), ('JasPer', '1.900.1'), - (java, javaver ,'', True), - ('ant', '1.9.3', '-%s-%s' % (java,javaver), True), + (java, javaver, '', True), + ('ant', '1.9.3', '-%s-%s' % (java, javaver), True), ('GLib', '2.40.0') ] @@ -63,8 +63,8 @@ configopts += '-DENABLE_SSE=ON -DENABLE_SSE2=ON -DENABLE_SSE3=ON ' configopts += '-DWITH_CUDA=OFF ' sanity_check_paths = { - 'files': ['lib/libopencv_core.so'] + - [ 'bin/opencv_%s' % x for x in ['haartraining', 'createsamples', 'performance', 'traincascade'] ], + 'files': ['lib/libopencv_core.%s' % SHLIB_EXT] + + ['bin/opencv_%s' % x for x in ['haartraining', 'createsamples', 'performance', 'traincascade']], 'dirs': ['include'] } diff --git a/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb index 3da865854a0f1ac72aee32436be2a577a96b570b..776b0d7db5adc50003bf3f23ded55f3ab19967fc 100644 --- a/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb +++ b/easybuild/easyconfigs/o/OpenCV/OpenCV-2.4.9-intel-2014b.eb @@ -32,13 +32,13 @@ javaver = '1.7.0_60' dependencies = [ (python, pythonver), ('zlib', '1.2.8'), - ('ffmpeg', '2.4'), + ('FFmpeg', '2.4'), ('libjpeg-turbo', '1.3.1'), ('libpng', '1.6.12'), ('LibTIFF', '4.0.3'), ('JasPer', '1.900.1'), - (java, javaver ,'', True), - ('ant', '1.9.3', '-%s-%s' % (java,javaver), True), + (java, javaver, '', True), + ('ant', '1.9.3', '-%s-%s' % (java, javaver), True), ('GLib', '2.40.0') ] @@ -63,8 +63,8 @@ configopts += '-DENABLE_SSE=ON -DENABLE_SSE2=ON -DENABLE_SSE3=ON ' configopts += '-DWITH_CUDA=OFF ' sanity_check_paths = { - 'files': ['lib/libopencv_core.so'] + - [ 'bin/opencv_%s' % x for x in ['haartraining', 'createsamples', 'performance', 'traincascade'] ], + 'files': ['lib/libopencv_core.%s' % SHLIB_EXT] + + ['bin/opencv_%s' % x for x in ['haartraining', 'createsamples', 'performance', 'traincascade']], 'dirs': ['include'] } diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6-goolf-1.4.10-20130711.eb b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6-goolf-1.4.10-20130711.eb index a8f00a37b116ebc4c720008d13a48610f672cb30..4f3563d5d386e9565dde9928a803eefc2dc31050 100644 --- a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6-goolf-1.4.10-20130711.eb +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6-goolf-1.4.10-20130711.eb @@ -8,7 +8,7 @@ homepage = 'http://www.extend-project.de/' description = """OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, -to solid dynamics and electromagnetics.""" +to solid dynamics and electromagnetics.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6-ictce-4.1.13-20130711.eb b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6-ictce-4.1.13-20130711.eb index 65508883f9b8e831c90b52738f95771a79575864..4426fd2e9ca06147f9971d2224e54e28fe9ea832 100644 --- a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6-ictce-4.1.13-20130711.eb +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-1.6-ictce-4.1.13-20130711.eb @@ -8,7 +8,7 @@ homepage = 'http://www.extend-project.de/' description = """OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, -to solid dynamics and electromagnetics.""" +to solid dynamics and electromagnetics.""" toolchain = {'name': 'ictce', 'version': '4.1.13'} diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0-goolf-1.4.10-20140227.eb b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0-goolf-1.4.10-20140227.eb index d7e99b56433e0f0488ce0559ef0bebc0e180ba46..2a3beb36838bea5093f5765bddd9d11f2eebeb3a 100644 --- a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0-goolf-1.4.10-20140227.eb +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.0-goolf-1.4.10-20140227.eb @@ -8,7 +8,7 @@ homepage = 'http://www.extend-project.de/' description = """OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, -to solid dynamics and electromagnetics.""" +to solid dynamics and electromagnetics.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} @@ -38,7 +38,7 @@ builddependencies = [ ('CMake', '2.8.12'), ] -prebuildopts = "(wcleanAll || echo 'all is fine') && " # clean up everything first (and ignore any errors) +prebuildopts = "(wcleanAll || echo 'all is fine') && " # clean up everything first (and ignore any errors) # too many builds in parallel actually slows down the build maxparallel = 4 diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-gimkl-2.11.5.eb b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-gimkl-2.11.5.eb index 79a66bc81f9e1488191a19c0da3b9aa5ed85e874..06755b2786a76b0027d65549257aac10af028995 100644 --- a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-gimkl-2.11.5.eb @@ -7,7 +7,7 @@ homepage = 'http://www.extend-project.de/' description = """OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, -to solid dynamics and electromagnetics.""" +to solid dynamics and electromagnetics.""" toolchain = {'name': 'gimkl', 'version': '2.11.5'} toolchainopts = {'usempi': True} @@ -40,7 +40,7 @@ builddependencies = [ ] -prebuildopts = "(wcleanAll || echo 'all is fine') && " # clean up everything first (and ignore any errors) +prebuildopts = "(wcleanAll || echo 'all is fine') && " # clean up everything first (and ignore any errors) # too many builds in parallel actually slows down the build maxparallel = 4 diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-goolf-1.4.10.eb index 9ed9e874c8d8a149f5df5e0dc7e6b9382e24c03c..bebef71955970ab74bb80ed2f22079ac5800ef4b 100644 --- a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.1-goolf-1.4.10.eb @@ -7,7 +7,7 @@ homepage = 'http://www.extend-project.de/' description = """OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, -to solid dynamics and electromagnetics.""" +to solid dynamics and electromagnetics.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'usempi': True} @@ -38,7 +38,7 @@ builddependencies = [ ('CMake', '2.8.12'), ] -prebuildopts = "(wcleanAll || echo 'all is fine') && " # clean up everything first (and ignore any errors) +prebuildopts = "(wcleanAll || echo 'all is fine') && " # clean up everything first (and ignore any errors) # too many builds in parallel actually slows down the build maxparallel = 4 diff --git a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.2-gimkl-2.11.5.eb b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.2-gimkl-2.11.5.eb index 8e980cbba309d6afce27ad5b6ddc252af0dbf765..4ddd37d882375208e3af112a7c2a74e9f7617ece 100644 --- a/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.2-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/o/OpenFOAM-Extend/OpenFOAM-Extend-3.2-gimkl-2.11.5.eb @@ -7,7 +7,7 @@ homepage = 'http://www.extend-project.de/' description = """OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, -to solid dynamics and electromagnetics.""" +to solid dynamics and electromagnetics.""" toolchain = {'name': 'gimkl', 'version': '2.11.5'} toolchainopts = {'usempi': True} @@ -40,7 +40,7 @@ builddependencies = [ ('CMake', '3.3.2'), ] -prebuildopts = "(wcleanAll || echo 'all is fine') && " # clean up everything first (and ignore any errors) +prebuildopts = "(wcleanAll || echo 'all is fine') && " # clean up everything first (and ignore any errors) # too many builds in parallel actually slows down the build maxparallel = 4 diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.0.1-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.0.1-goolf-1.4.10.eb index 9a63e57ca5cfd814a531ec39aeacff060f6ea4a2..f6e2827584fe72a2222d2cf90b7edbf85639c5e6 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.0.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.0.1-goolf-1.4.10.eb @@ -15,9 +15,10 @@ sources = [ 'ThirdParty-%(version)s.gtgz', ] -patches = ['cleanup-OpenFOAM-%s.patch' % version, - ('cleanup-ThirdParty-%s.patch' % version, "..") # patch should not be applied in OpenFOAM subdir - ] +patches = [ + 'cleanup-OpenFOAM-%(version)s.patch', + ('cleanup-ThirdParty-%(version)s.patch', ".."), # patch should not be applied in OpenFOAM subdir +] builddependencies = [('flex', '2.5.35')] diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.0.1-ictce-6.1.5.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.0.1-ictce-6.1.5.eb index 1020e0de704f3af3c2b9f379f41bf2dee2084e72..2836d4ab9decae7963f31b0ed0555161eb663df5 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.0.1-ictce-6.1.5.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.0.1-ictce-6.1.5.eb @@ -15,9 +15,10 @@ sources = [ 'ThirdParty-%(version)s.gtgz', ] -patches = ['cleanup-OpenFOAM-%s.patch' % version, - ('cleanup-ThirdParty-%s.patch' % version, "..") # patch should not be applied in OpenFOAM subdir - ] +patches = [ + 'cleanup-OpenFOAM-%(version)s.patch', + ('cleanup-ThirdParty-%(version)s.patch', ".."), # patch should not be applied in OpenFOAM subdir +] builddependencies = [('flex', '2.5.38')] diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-goalf-1.1.0-no-OFED.eb index 47f96c354b3957656ef4a474792b3901f0c550e3..eeefa3f7b2eff54dc748a87a85f7c412334e620a 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-goalf-1.1.0-no-OFED.eb @@ -15,9 +15,10 @@ sources = [ 'ThirdParty-%(version)s.tgz', ] -patches = ['cleanup-OpenFOAM-%s.patch' % version, - ('cleanup-ThirdParty-%s.patch' % version, "..") # patch should not be applied in OpenFOAM subdir - ] +patches = [ + 'cleanup-OpenFOAM-%(version)s.patch', + ('cleanup-ThirdParty-%(version)s.patch', ".."), # patch should not be applied in OpenFOAM subdir +] builddependencies = [('flex', '2.5.35')] diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-goolf-1.4.10.eb index f8941ca15c5c5805ec33d4655681c327ca7ce716..686251e8fe7f53c2e34ed15fa34800ca84d87d77 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-goolf-1.4.10.eb @@ -15,9 +15,10 @@ sources = [ 'ThirdParty-%(version)s.tgz', ] -patches = ['cleanup-OpenFOAM-%s.patch' % version, - ('cleanup-ThirdParty-%s.patch' % version, "..") # patch should not be applied in OpenFOAM subdir - ] +patches = [ + 'cleanup-OpenFOAM-%(version)s.patch', + ('cleanup-ThirdParty-%(version)s.patch', ".."), # patch should not be applied in OpenFOAM subdir +] builddependencies = [('flex', '2.5.35')] diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-ictce-4.0.6.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-ictce-4.0.6.eb index 9a382ba0a0f33bf40e4edebfc3a4a8cd02bb80fe..1a0fdd75190c716351d8ea3e0589a0fe9225983a 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-ictce-4.0.6.eb @@ -15,9 +15,10 @@ sources = [ 'ThirdParty-%(version)s.tgz', ] -patches = ['cleanup-OpenFOAM-%s.patch' % version, - ('cleanup-ThirdParty-%s.patch' % version, "..") # patch should not be applied in OpenFOAM subdir - ] +patches = [ + 'cleanup-OpenFOAM-%(version)s.patch', + ('cleanup-ThirdParty-%(version)s.patch', ".."), # patch should not be applied in OpenFOAM subdir +] builddependencies = [('flex', '2.5.35')] diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-ictce-5.3.0.eb index 3f4d83aadebc580b435c635fe5897a3a76107f4a..823efd74ab2aace05329b9e109fb4557a95c3392 100644 --- a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-2.1.1-ictce-5.3.0.eb @@ -15,9 +15,10 @@ sources = [ 'ThirdParty-%(version)s.tgz', ] -patches = ['cleanup-OpenFOAM-%s.patch' % version, - ('cleanup-ThirdParty-%s.patch' % version, "..") # patch should not be applied in OpenFOAM subdir - ] +patches = [ + 'cleanup-OpenFOAM-%(version)s.patch', + ('cleanup-ThirdParty-%(version)s.patch', ".."), # patch should not be applied in OpenFOAM subdir +] builddependencies = [('flex', '2.5.35')] diff --git a/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-3.0.0-foss-2016a.eb b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-3.0.0-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..7985e4b2671c60eb4b7cad3206bb05011871d543 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-3.0.0-foss-2016a.eb @@ -0,0 +1,39 @@ +name = 'OpenFOAM' +version = '3.0.0' + +homepage = 'http://www.openfoam.com/' +description = """OpenFOAM is a free, open source CFD software package. + OpenFOAM has an extensive range of features to solve anything from complex fluid flows + involving chemical reactions, turbulence and heat transfer, + to solid dynamics and electromagnetics.""" + +toolchain = {'name': 'foss', 'version': '2016a'} + +source_urls = ['http://downloads.sourceforge.net/foam/%(version)s'] +sources = [ + SOURCE_TGZ, + 'ThirdParty-%(version)s.tgz', +] + +patches = [ + 'OpenFOAM-%(version)s_cleanup.patch', + 'OpenFOAM-%(version)s_libreadline.patch', + ('ThirdParty-%(version)s_cleanup.patch', ".."), # patch should not be applied in OpenFOAM subdir +] + +dependencies = [ + ('libreadline', '6.3'), + # OpenFOAM requires 64 bit METIS using 32 bit indexes (array indexes) + ('METIS', '5.1.0', '-32bitIDX'), + ('ncurses', '6.0'), + ('SCOTCH', '6.0.4'), + ('Boost', '1.60.0'), +] + +builddependencies = [ + ('Bison', '3.0.4'), + ('CMake', '3.4.3'), + ('flex', '2.5.39'), +] + +moduleclass = 'cae' diff --git a/easybuild/easyconfigs/o/OpenMD/OpenMD-2.2-ictce-7.1.2.eb b/easybuild/easyconfigs/o/OpenMD/OpenMD-2.2-ictce-7.1.2.eb index 2a9e21b8aa37f5f7b062b8184e03a772dbc22bbf..9d61c22c0958490376b89253aadc8cdda0a179f5 100644 --- a/easybuild/easyconfigs/o/OpenMD/OpenMD-2.2-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/o/OpenMD/OpenMD-2.2-ictce-7.1.2.eb @@ -15,7 +15,7 @@ toolchainopts = {'usempi': True, 'optarch': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://openmd.org/releases'] -builddependencies = [('CMake' , '2.8.12')] +builddependencies = [('CMake', '2.8.12')] dependencies = [ ('Python', '2.7.8'), diff --git a/easybuild/easyconfigs/o/OpenMD/OpenMD-2.2-intel-2014b.eb b/easybuild/easyconfigs/o/OpenMD/OpenMD-2.2-intel-2014b.eb index 0ae135dd9d085bb24388eaf519c2837662de573c..1e5a20c6c0d892373a4a2f234e37e981eb058df1 100644 --- a/easybuild/easyconfigs/o/OpenMD/OpenMD-2.2-intel-2014b.eb +++ b/easybuild/easyconfigs/o/OpenMD/OpenMD-2.2-intel-2014b.eb @@ -15,7 +15,7 @@ toolchainopts = {'usempi': True, 'optarch': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://openmd.org/releases'] -builddependencies = [('CMake' , '2.8.12')] +builddependencies = [('CMake', '2.8.12')] dependencies = [ ('Python', '2.7.8'), diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.1-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.1-GCC-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..c91ebdd2216e1bf5237bca369b0676951b25491e --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.1-GCC-4.9.3-2.25.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.10.1' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +dependencies = [('hwloc', '1.11.2')] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] + +libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in libs] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..6afba2f2929dc490f7e934bf6cac1210f8fa89a4 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.10.2-GCC-4.9.3-2.25.eb @@ -0,0 +1,32 @@ +easyblock = 'ConfigureMake' + +name = 'OpenMPI' +version = '1.10.2' + +homepage = 'http://www.open-mpi.org/' +description = """The Open MPI Project is an open source MPI-2 implementation.""" + +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] + +dependencies = [('hwloc', '1.11.2')] + +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' +configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path +configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support +configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading + +# needed for --with-verbs +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] + +libs = ["mpi_cxx", "mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] +sanity_check_paths = { + 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in libs] + + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], + 'dirs': ["include/openmpi/ompi/mpi/cxx"], +} + +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb index d88a606fa0874e2b4b4eddd005397d49a5617cf0..8e4b15732daa19b818a4708cf2968c502b5aec67 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.3-iccifort-2011.13.367.eb @@ -30,4 +30,10 @@ sanity_check_paths = { 'dirs': ["include/openmpi/ompi/mpi/cxx"], } +sanity_check_commands = [ + ('mpicc --version | grep icc', ''), + ('mpicxx --version | grep icpc', ''), + ('mpif90 --version | grep ifort', ''), +] + moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2-no-OFED.eb index 8b588833b0c12bbf66e7797020c3a94ca1a0e326..4310e30ba0325ab150ddebc678bc72a7bf3ff682 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.4-GCC-4.7.2-no-OFED.eb @@ -14,7 +14,7 @@ source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/d dependencies = [('hwloc', '1.6.2')] -configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --without-openib ' +configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --without-openib ' configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb index ccbc9394ec9eed2af9e1eccbe052d90063a61f14..417cf55b81c7c839d0a55cebac4454e44f2e93c2 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.7.3-no-OFED.eb @@ -12,8 +12,8 @@ toolchain = {'name': 'GCC', 'version': '4.7.3'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] -patches = [ - 'OpenMPI-1.6.5-vt_cupti_events.patch', +patches = [ + 'OpenMPI-1.6.5-vt_cupti_events.patch', ] configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --without-openib ' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb index ce23f55355012b7649e9e014603456c3b077bab5..9701c637edafd609de2670580faa30467b872785 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1-no-OFED.eb @@ -12,8 +12,8 @@ toolchain = {'name': 'GCC', 'version': '4.8.1'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] -patches = [ - 'OpenMPI-1.6.5-vt_cupti_events.patch', +patches = [ + 'OpenMPI-1.6.5-vt_cupti_events.patch', ] configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --without-openib ' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb index c6b40582c811ab933be965e5e3d4a70972a3c210..231057cda1a4f63df0b4b0a525ccc9ca30dff92b 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.1.eb @@ -11,8 +11,8 @@ toolchain = {'name': 'GCC', 'version': '4.8.1'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] -patches = [ - 'OpenMPI-1.6.5-vt_cupti_events.patch', +patches = [ + 'OpenMPI-1.6.5-vt_cupti_events.patch', ] configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2-no-OFED.eb index 2afbc4733e247f52c6237f6660133c85b8f746f6..9c4d7ed9f6a7b5b586ebf59f8aa954fbe0bb0f84 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2-no-OFED.eb @@ -12,8 +12,8 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] -patches = [ - 'OpenMPI-1.6.5-vt_cupti_events.patch', +patches = [ + 'OpenMPI-1.6.5-vt_cupti_events.patch', ] configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --without-openib ' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb index 8af372736a44fabbbb08930300abd29c4e875038..8b4682c1dba5eee26c43fac300fee5758d24891d 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.2.eb @@ -11,8 +11,8 @@ toolchain = {'name': 'GCC', 'version': '4.8.2'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] -patches = [ - 'OpenMPI-1.6.5-vt_cupti_events.patch', +patches = [ + 'OpenMPI-1.6.5-vt_cupti_events.patch', ] configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb index 2ae7377c3711c9dc395ade0bda8a717d614b459a..90ce3018dedbbf2c3d963b2da7ec4f4550b183c1 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-GCC-4.8.3.eb @@ -11,8 +11,8 @@ toolchain = {'name': 'GCC', 'version': '4.8.3'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] -patches = [ - 'OpenMPI-1.6.5-vt_cupti_events.patch', +patches = [ + 'OpenMPI-1.6.5-vt_cupti_events.patch', ] configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-openib ' @@ -23,7 +23,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' dependencies = [('hwloc', '1.8.1')] # needed for --with-openib -osdependencies = [('libibverbs-dev','libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] libs = ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb index 4fc8978e4dd5bda028cdc3019bcd9366074d5edf..069c5ad3b937db38c399d1cf3b114ebc7abc957c 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.2.144.eb @@ -30,4 +30,10 @@ sanity_check_paths = { 'dirs': ["include/openmpi/ompi/mpi/cxx"], } +sanity_check_commands = [ + ('mpicc --version | grep icc', ''), + ('mpicxx --version | grep icpc', ''), + ('mpif90 --version | grep ifort', ''), +] + moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb index 0bb4349893a40dbd2b9e1ac16432eeb08305d867..702e7940ba301df5c8081963140d14ffe4c72e97 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211-no-OFED.eb @@ -28,4 +28,10 @@ sanity_check_paths = { 'dirs': ["include/openmpi/ompi/mpi/cxx"], } +sanity_check_commands = [ + ('mpicc --version | grep icc', ''), + ('mpicxx --version | grep icpc', ''), + ('mpif90 --version | grep ifort', ''), +] + moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb index e9f2f244ec124a54d581a97c0e27e3266c7903bb..7ee3a0b73712ed3a86c56d8d5c3c53bd51e9c4a5 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.6.5-iccifort-2013_sp1.4.211.eb @@ -18,7 +18,7 @@ configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support dependencies = [('hwloc', '1.9')] # needed for --with-openib -osdependencies = [('libibverbs-dev','libibverbs-devel')] +osdependencies = [('libibverbs-dev', 'libibverbs-devel')] libs = ["mpi_cxx", "mpi_f77", "mpi_f90", "mpi", "ompitrace", "open-pal", "open-rte", "vt", "vt-hyb", "vt-mpi", "vt-mpi-unify"] @@ -30,4 +30,10 @@ sanity_check_paths = { 'dirs': ["include/openmpi/ompi/mpi/cxx"], } +sanity_check_commands = [ + ('mpicc --version | grep icc', ''), + ('mpicxx --version | grep icpc', ''), + ('mpif90 --version | grep ifort', ''), +] + moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb index 10774dff41ae6028fb5708e770c44b6a5efdb2b3..0d0d8c22439cabfb6ddd9ef49219af0cae6e17db 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.7.3-gcccuda-2.6.10.eb @@ -11,7 +11,7 @@ toolchain = {'name': 'gcccuda', 'version': '2.6.10'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] -patches = [ +patches = [ 'OpenMPI-%(version)s_common-cuda-lib.patch', 'OpenMPI-%(version)s-vt_cupti_events.patch', ] diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb index c6c6f0c9abedef3c520b51107fecf6f6e967bff9..c0e27137e3b2fbf6b849096f35dcdca1633989bd 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211-no-OFED.eb @@ -28,5 +28,10 @@ sanity_check_paths = { 'dirs': ["include/openmpi/ompi/mpi/cxx"], } -moduleclass = 'mpi' +sanity_check_commands = [ + ('mpicc --version | grep icc', ''), + ('mpicxx --version | grep icpc', ''), + ('mpifort --version | grep ifort', ''), +] +moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb index f5e9417cad30712278bc9b5e87c3d59d6da270cb..19949c397cc13964e94fdcad77308e74de4d2a25 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.3-iccifort-2013_sp1.4.211.eb @@ -29,4 +29,10 @@ sanity_check_paths = { 'dirs': ["include/openmpi/ompi/mpi/cxx"], } +sanity_check_commands = [ + ('mpicc --version | grep icc', ''), + ('mpicxx --version | grep icpc', ''), + ('mpifort --version | grep ifort', ''), +] + moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb index 780c3c78ba6dfab1b6a0032e5c5567383be30fc6..d39ca71b30c149d765d6b471ac5916051ee4da8f 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.1.133-GCC-4.9.2.eb @@ -30,4 +30,10 @@ sanity_check_paths = { 'dirs': ["include/openmpi/ompi/mpi/cxx"], } +sanity_check_commands = [ + ('mpicc --version | grep icc', ''), + ('mpicxx --version | grep icpc', ''), + ('mpifort --version | grep ifort', ''), +] + moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb index ca0afea9dc034c006d7c3a8637f513f221a4b69a..86eed73b49ff3fe70463b5c517a6e6e9250ecdbd 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.4-iccifort-2015.2.164-GCC-4.9.2.eb @@ -15,7 +15,6 @@ source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/d configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support -configopts += ' CC=icc FC=ifort CXX=icpc ' configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading dependencies = [('hwloc', '1.10.0')] @@ -31,4 +30,10 @@ sanity_check_paths = { 'dirs': ["include/openmpi/ompi/mpi/cxx"], } +sanity_check_commands = [ + ('mpicc --version | grep icc', ''), + ('mpicxx --version | grep icpc', ''), + ('mpifort --version | grep ifort', ''), +] + moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.8-iccifort-2015.3.187-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.8-iccifort-2015.3.187-GNU-4.9.3-2.25.eb index 10e25e882aa8887986ec0906feec194a1cf94d32..34da0e5297f318e92c7a70b18c5b5af7293fe77e 100644 --- a/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.8-iccifort-2015.3.187-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/o/OpenMPI/OpenMPI-1.8.8-iccifort-2015.3.187-GNU-4.9.3-2.25.eb @@ -15,7 +15,6 @@ source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/d configopts = '--with-threads=posix --enable-shared --enable-mpi-thread-multiple --with-verbs ' configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support -configopts += ' CC=icc FC=ifort CXX=icpc ' configopts += '--disable-dlopen ' # statically link component, don't do dynamic loading dependencies = [('hwloc', '1.11.1')] @@ -31,4 +30,10 @@ sanity_check_paths = { 'dirs': ["include/openmpi/ompi/mpi/cxx"], } +sanity_check_commands = [ + ('mpicc --version | grep icc', ''), + ('mpicxx --version | grep icpc', ''), + ('mpifort --version | grep ifort', ''), +] + moduleclass = 'mpi' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2015a.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2015a.eb index 6dae1dce8531dbe3c06c2fbc0797ec320d00c25e..34c308ea5d735fe2189865b2b34ea6f5fd43ee3b 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2015a.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-foss-2015a.eb @@ -20,7 +20,7 @@ configopts = '--with-pic' start_dir = 'pgm' sanity_check_paths = { - 'files': ['lib/libpgm.so', 'lib/libpgm.a'], + 'files': ['lib/libpgm.%s' % SHLIB_EXT, 'lib/libpgm.a'], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goalf-1.1.0-no-OFED.eb index 07cb82d75cc5bbc0dab4ab21870117fd53a6bd8c..5a5ff8f5b9eb59822dea3ec1e51abbc4f0bfa0be 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goalf-1.1.0-no-OFED.eb @@ -20,8 +20,8 @@ configopts = '--with-pic' start_dir = 'pgm' sanity_check_paths = { - 'files': ['lib/libpgm.so', 'lib/libpgm.a'], - 'dirs': ['include'] - } + 'files': ['lib/libpgm.%s' % SHLIB_EXT, 'lib/libpgm.a'], + 'dirs': ['include'] +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb index 46f7b823540842a229344df529ed52f9bd9a04e0..da4b481d25e32d00cbf146c52295aa5d70a3f1c0 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-goolf-1.4.10.eb @@ -20,8 +20,8 @@ configopts = '--with-pic' start_dir = 'pgm' sanity_check_paths = { - 'files': ['lib/libpgm.so', 'lib/libpgm.a'], - 'dirs': ['include'] - } + 'files': ['lib/libpgm.%s' % SHLIB_EXT, 'lib/libpgm.a'], + 'dirs': ['include'] +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-4.1.13.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-4.1.13.eb index 6ae37f3575be15cd22880fb5debc7524b9a797ab..0fee5daa4373e23b0bb04ab6deeec99c059dca74 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-4.1.13.eb @@ -20,8 +20,8 @@ configopts = '--with-pic' start_dir = 'pgm' sanity_check_paths = { - 'files': ['lib/libpgm.so', 'lib/libpgm.a'], - 'dirs': ['include'] - } + 'files': ['lib/libpgm.%s' % SHLIB_EXT, 'lib/libpgm.a'], + 'dirs': ['include'] +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb index a26c28e0af5280e27a8610de3a8c420e0085eebf..8aaab1f337b9a781a368d61da25af2594dbb3e75 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.3.0.eb @@ -21,8 +21,8 @@ configopts = '--with-pic' start_dir = 'pgm' sanity_check_paths = { - 'files': ['lib/libpgm.so', 'lib/libpgm.a'], - 'dirs': ['include'] - } + 'files': ['lib/libpgm.%s' % SHLIB_EXT, 'lib/libpgm.a'], + 'dirs': ['include'] +} moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb index 324c3ec862b28615e208813165f5f7832f1283a8..e0719d72e6c3b534a04075363a09879c69ace82b 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-ictce-5.5.0.eb @@ -20,7 +20,7 @@ configopts = '--with-pic' start_dir = 'pgm' sanity_check_paths = { - 'files': ['lib/libpgm.so', 'lib/libpgm.a'], + 'files': ['lib/libpgm.%s' % SHLIB_EXT, 'lib/libpgm.a'], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb index bb2adb94d7c0a397596e7d15a76752dd5c118861..690b4d99ca2bee029a64d78938be52a5302df775 100644 --- a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015a.eb @@ -20,7 +20,7 @@ configopts = '--with-pic' start_dir = 'pgm' sanity_check_paths = { - 'files': ['lib/libpgm.so', 'lib/libpgm.a'], + 'files': ['lib/libpgm.%s' % SHLIB_EXT, 'lib/libpgm.a'], 'dirs': ['include'], } diff --git a/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015b.eb b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..26e1420fdaffd92f0979b43a83d48f3696cb5264 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenPGM/OpenPGM-5.2.122-intel-2015b.eb @@ -0,0 +1,28 @@ +easyblock = 'ConfigureMake' + +name = 'OpenPGM' +version = '5.2.122' + +homepage = 'http://code.google.com/p/openpgm/' +description = """OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) + specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol + that enables receivers to detect loss, request retransmission of lost data, or notify an application + of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible + for ensuring all data is received, absolving the sender of reception responsibility.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'pic': True} + +source_urls = [GOOGLECODE_SOURCE] +sources = ['libpgm-%(version)s.tar.gz'] + +configopts = '--with-pic' + +start_dir = 'pgm' + +sanity_check_paths = { + 'files': ['lib/libpgm.so', 'lib/libpgm.a'], + 'dirs': ['include'], +} + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1r-foss-2015b.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1r-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..9c3838a1b7b893bb545c55584ed951070187f7a7 --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1r-foss-2015b.eb @@ -0,0 +1,19 @@ +name = 'OpenSSL' +version = '1.0.1r' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +dependencies = [('zlib', '1.2.8')] + +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1s-intel-2016a.eb b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1s-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..976aa24ab2f0ec6bcb90540c7d48436a9c2ee07e --- /dev/null +++ b/easybuild/easyconfigs/o/OpenSSL/OpenSSL-1.0.1s-intel-2016a.eb @@ -0,0 +1,21 @@ +name = 'OpenSSL' +version = '1.0.1s' + +homepage = 'http://www.openssl.org/' +description = """The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, + and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) + protocols as well as a full-strength general purpose cryptography library. """ + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.openssl.org/source/'] + +patches = ['OpenSSL-1.0.1q_icc-fixes.patch'] + +dependencies = [('zlib', '1.2.8')] + +runtest = 'test' + +moduleclass = 'system' diff --git a/easybuild/easyconfigs/o/o2scl/o2scl-0.913-goolf-1.4.10.eb b/easybuild/easyconfigs/o/o2scl/o2scl-0.913-goolf-1.4.10.eb index 539e278a55796051e06244ac07502a6fe117b527..665ae52c04d529e79b628283fed4fc30ce53d3a8 100644 --- a/easybuild/easyconfigs/o/o2scl/o2scl-0.913-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/o2scl/o2scl-0.913-goolf-1.4.10.eb @@ -20,7 +20,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] -dependencies = [ +dependencies = [ ('Eigen', '3.1.4'), ('libreadline', '6.2'), ('HDF5', '1.8.11'), diff --git a/easybuild/easyconfigs/o/orthomcl/orthomcl-2.0.8-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/o/orthomcl/orthomcl-2.0.8-goolf-1.4.10-Perl-5.16.3.eb index 54437d6a78ae44e6c13a74e88bdccf90008e220b..2cbfe2886febcbbb0f562b81f248b74f4c868cbb 100644 --- a/easybuild/easyconfigs/o/orthomcl/orthomcl-2.0.8-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/o/orthomcl/orthomcl-2.0.8-goolf-1.4.10-Perl-5.16.3.eb @@ -27,7 +27,7 @@ sanity_check_paths = { 'ExtractProteinIdsFromGroupsFile', 'ExtractProteinPairsFromGroupsFile', 'FilterFasta', 'InstallSchema', 'LoadBlast', 'MclToGroups', 'Pairs', 'ReduceFasta', 'ReduceGroups', 'RemoveIdenticalGroups', 'Singletons', - 'SortGroupMembersByScore', 'SortGroupsFile']], + 'SortGroupMembersByScore', 'SortGroupsFile']], 'dirs': ['lib/perl/OrthoMCLEngine'], } diff --git a/easybuild/easyconfigs/o/orthomcl/orthomcl-2.0.8-ictce-4.1.13-Perl-5.16.3.eb b/easybuild/easyconfigs/o/orthomcl/orthomcl-2.0.8-ictce-4.1.13-Perl-5.16.3.eb index 0bcdb50b2fcb758271df587866d161d04db8db6c..b5689400cf4567463c5bcc99010dda8e231d5f85 100644 --- a/easybuild/easyconfigs/o/orthomcl/orthomcl-2.0.8-ictce-4.1.13-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/o/orthomcl/orthomcl-2.0.8-ictce-4.1.13-Perl-5.16.3.eb @@ -27,7 +27,7 @@ sanity_check_paths = { 'ExtractProteinIdsFromGroupsFile', 'ExtractProteinPairsFromGroupsFile', 'FilterFasta', 'InstallSchema', 'LoadBlast', 'MclToGroups', 'Pairs', 'ReduceFasta', 'ReduceGroups', 'RemoveIdenticalGroups', 'Singletons', - 'SortGroupMembersByScore', 'SortGroupsFile']], + 'SortGroupMembersByScore', 'SortGroupsFile']], 'dirs': ['lib/perl/OrthoMCLEngine'], } diff --git a/easybuild/easyconfigs/o/orthomcl/orthomcl-2.0.8-ictce-5.3.0-Perl-5.16.3.eb b/easybuild/easyconfigs/o/orthomcl/orthomcl-2.0.8-ictce-5.3.0-Perl-5.16.3.eb index 4cb9385e591baa1714e04ded2b2036ea177d5545..2fe03116064d8558042da83bea1660ee848cf32e 100644 --- a/easybuild/easyconfigs/o/orthomcl/orthomcl-2.0.8-ictce-5.3.0-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/o/orthomcl/orthomcl-2.0.8-ictce-5.3.0-Perl-5.16.3.eb @@ -27,7 +27,7 @@ sanity_check_paths = { 'ExtractProteinIdsFromGroupsFile', 'ExtractProteinPairsFromGroupsFile', 'FilterFasta', 'InstallSchema', 'LoadBlast', 'MclToGroups', 'Pairs', 'ReduceFasta', 'ReduceGroups', 'RemoveIdenticalGroups', 'Singletons', - 'SortGroupMembersByScore', 'SortGroupsFile']], + 'SortGroupMembersByScore', 'SortGroupsFile']], 'dirs': ['lib/perl/OrthoMCLEngine'], } diff --git a/easybuild/easyconfigs/o/otcl/otcl-1.14-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/o/otcl/otcl-1.14-goalf-1.1.0-no-OFED.eb index 1d362a73aed15a463d9bf402da6020b7c43cb33f..8a1c43632470edb7d75a8307f1724966a7ae2fc2 100644 --- a/easybuild/easyconfigs/o/otcl/otcl-1.14-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/o/otcl/otcl-1.14-goalf-1.1.0-no-OFED.eb @@ -27,7 +27,7 @@ configopts += "--with-tk-ver=$EBVERSIONTK" parallel = 1 sanity_check_paths = { - 'files': ['bin/otclsh', 'include/otcl.h', 'lib/libotcl.a', 'lib/libotcl.so'], + 'files': ['bin/otclsh', 'include/otcl.h', 'lib/libotcl.a', 'lib/libotcl.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/otcl/otcl-1.14-goolf-1.4.10.eb b/easybuild/easyconfigs/o/otcl/otcl-1.14-goolf-1.4.10.eb index 0a50c8abb900ab8217b65b783aa90a2096638960..49c68abea9d54b9da1710d607f0dacafda879552 100644 --- a/easybuild/easyconfigs/o/otcl/otcl-1.14-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/o/otcl/otcl-1.14-goolf-1.4.10.eb @@ -27,7 +27,7 @@ configopts += "--with-tk-ver=$EBVERSIONTK" parallel = 1 sanity_check_paths = { - 'files': ['bin/otclsh', 'include/otcl.h', 'lib/libotcl.a', 'lib/libotcl.so'], + 'files': ['bin/otclsh', 'include/otcl.h', 'lib/libotcl.a', 'lib/libotcl.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/o/otcl/otcl-1.14-ictce-5.3.0.eb b/easybuild/easyconfigs/o/otcl/otcl-1.14-ictce-5.3.0.eb index 597dc68acfb27bcf97892d8a8969333a8a619ba9..f53d6887c371e99022a717848ef6974feda08c7c 100644 --- a/easybuild/easyconfigs/o/otcl/otcl-1.14-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/o/otcl/otcl-1.14-ictce-5.3.0.eb @@ -27,7 +27,7 @@ configopts += "--with-tk-ver=$EBVERSIONTK" parallel = 1 sanity_check_paths = { - 'files': ['bin/otclsh', 'include/otcl.h', 'lib/libotcl.a', 'lib/libotcl.so'], + 'files': ['bin/otclsh', 'include/otcl.h', 'lib/libotcl.a', 'lib/libotcl.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-goolf-1.4.10.eb index fdec406ad1f510de4c6d9b2380fe0d59674aae85..86983e66d24f54203817656e1e4a215b068d69b5 100644 --- a/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-goolf-1.4.10.eb @@ -23,7 +23,7 @@ preconfigopts = "./autogen.sh &&" sanity_check_paths = { 'files': ['bin/pandaseq', 'bin/pandaseq-checkid', 'bin/pandaseq-hang', 'bin/pandaxs', - 'lib/libpandaseq.so', 'lib/libpandaseq.a', 'lib/pkgconfig/pandaseq-%(version_major)s.pc'], + 'lib/libpandaseq.%s' % SHLIB_EXT, 'lib/libpandaseq.a', 'lib/pkgconfig/pandaseq-%(version_major)s.pc'], 'dirs': ['include/pandaseq-%(version_major)s'], } diff --git a/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-ictce-4.1.13.eb b/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-ictce-4.1.13.eb index c0eaa92772a19de460601ff96603ec8c3c6f84e3..3691e4a15a4b7ca8dd68aa235509e2d1f9c7e0fb 100644 --- a/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/PANDAseq/PANDAseq-2.5-ictce-4.1.13.eb @@ -23,7 +23,7 @@ preconfigopts = "./autogen.sh &&" sanity_check_paths = { 'files': ['bin/pandaseq', 'bin/pandaseq-checkid', 'bin/pandaseq-hang', 'bin/pandaxs', - 'lib/libpandaseq.so', 'lib/libpandaseq.a', 'lib/pkgconfig/pandaseq-%(version_major)s.pc'], + 'lib/libpandaseq.%s' % SHLIB_EXT, 'lib/libpandaseq.a', 'lib/pkgconfig/pandaseq-%(version_major)s.pc'], 'dirs': ['include/pandaseq-%(version_major)s'], } diff --git a/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-goolf-1.4.10.eb index e0822f5ef30310772f7eebef96341330bffb9f96..e1ffffe6152d84a7b9754868291d9abb0cdd2e5f 100644 --- a/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-goolf-1.4.10.eb @@ -6,7 +6,7 @@ easyblock = 'MakeCp' name = 'PBZIP2' -version = '1.1.8' +version = '1.1.8' homepage = 'http://compression.ca/pbzip2/' description = """ PBZIP2 is a parallel implementation of the bzip2 block-sorting file @@ -24,7 +24,7 @@ buildopts = " CC=$CXX" parallel = 1 files_to_copy = [(["pbzip2"], "bin"), (["pbzip2.1"], "man/man1"), "README", "ChangeLog"] - + sanity_check_paths = { 'files': ["bin/pbzip2"], 'dirs': [], diff --git a/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-ictce-6.2.5.eb b/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-ictce-6.2.5.eb index a1befffbe40b73e286c1feec3f07abf8c3a6c965..795cc4f409ca348c9fe0770d32b069c62f4c7e6b 100644 --- a/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/p/PBZIP2/PBZIP2-1.1.8-ictce-6.2.5.eb @@ -6,7 +6,7 @@ easyblock = 'MakeCp' name = 'PBZIP2' -version = '1.1.8' +version = '1.1.8' homepage = 'http://compression.ca/pbzip2/' description = """ PBZIP2 is a parallel implementation of the bzip2 block-sorting file @@ -14,7 +14,7 @@ description = """ PBZIP2 is a parallel implementation of the bzip2 block-sorting of this version is fully compatible with bzip2 v1.0.2 or newer (ie: anything compressed with pbzip2 can be decompressed with bzip2).""" -toolchain = {'name': 'ictce', 'version': '6.2.5'} +toolchain = {'name': 'ictce', 'version': '6.2.5'} source_urls = ['http://compression.ca/pbzip2/'] sources = [SOURCELOWER_TAR_GZ] @@ -24,7 +24,7 @@ buildopts = " CC=$CXX" parallel = 1 files_to_copy = [(["pbzip2"], "bin"), (["pbzip2.1"], "man/man1"), "README", "ChangeLog"] - + sanity_check_paths = { 'files': ["bin/pbzip2"], 'dirs': [], diff --git a/easybuild/easyconfigs/p/PCC/PCC-20131024.eb b/easybuild/easyconfigs/p/PCC/PCC-20131024.eb index be6e59a2e93efa193ad350e651f28dd23eb2e467..c40392b7711f295f9ad46e89c728c0a8e2a580e3 100644 --- a/easybuild/easyconfigs/p/PCC/PCC-20131024.eb +++ b/easybuild/easyconfigs/p/PCC/PCC-20131024.eb @@ -28,7 +28,7 @@ builddependencies = [ ] sanity_check_paths = { - 'files': ["bin/pcc"], + 'files': ["bin/pcc"], 'dirs': ["lib"] } diff --git a/easybuild/easyconfigs/p/PCMSolver/PCMSolver-20160205-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/p/PCMSolver/PCMSolver-20160205-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..861cd9d963571922fc4b6fd91cac92c71198d1d4 --- /dev/null +++ b/easybuild/easyconfigs/p/PCMSolver/PCMSolver-20160205-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,43 @@ +easyblock = 'CMakeMake' + +name = 'PCMSolver' +version = '20160205' + +homepage = 'https://pcmsolver.readthedocs.org' +description = """An API for the Polarizable Continuum Model.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'cstd': 'c99'} + +sources = ['2473699d6c5db36525160e.tar.gz'] +source_urls = ['https://github.com/PCMSolver/pcmsolver/archive/'] + +python = 'Python' +pyver = '2.7.11' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), + ('zlib', '1.2.8'), + ('Boost', '1.59.0', versionsuffix), +] + +builddependencies = [ + ('CMake', '3.4.3'), + ('Eigen', '3.2.7'), +] + +configopts = '-DCMAKE_BUILD_TYPE=Release -DEIGEN3_ROOT=$EBROOTEIGEN -DCMAKE_CXX_FLAGS="$LIBLAPACK_MT -DEIGEN_USE_MKL_ALL"' + +separate_build_dir = True + +runtest = 'test' + +postinstallcmds = ["chmod +x %(installdir)s/bin/pcmsolver.py"] + +sanity_check_paths = { + 'files': ['bin/pcmsolver.py', 'lib/libpcm.a', 'lib/libpcm.%s' % SHLIB_EXT], + 'dirs': ['include'] +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goalf-1.1.0-no-OFED.eb index 4a9ef5925f14b7d11c1ca601fddf4ecf13978508..497a1cd0363abd7fc9566aa24985835a6f37eac5 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goalf-1.1.0-no-OFED.eb @@ -13,6 +13,6 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = ['http://prdownloads.sourceforge.net/pcre'] sources = [SOURCELOWER_TAR_GZ] -configopts = "--with-pic --disable-cpp" +configopts = "--with-pic --disable-cpp --enable-utf --enable-unicode-properties" moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goolf-1.4.10.eb index 5916d698fc1f9082c2cca5747400d90876155684..a1e4190b5984f4e29988209df2ae1aa43d9788aa 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-goolf-1.4.10.eb @@ -13,6 +13,6 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = ['http://prdownloads.sourceforge.net/pcre'] sources = [SOURCELOWER_TAR_GZ] -configopts = "--with-pic --disable-cpp" +configopts = "--with-pic --disable-cpp --enable-utf --enable-unicode-properties" moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-4.0.6.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-4.0.6.eb index e5f29eb85e583a56a26614919094ca460d342bf8..c2c366d78ab2a8f2a308e156b8b9c795c09a14d3 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-4.0.6.eb @@ -13,6 +13,6 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = ['http://prdownloads.sourceforge.net/pcre'] sources = [SOURCELOWER_TAR_GZ] -configopts = "--with-pic --disable-cpp" +configopts = "--with-pic --disable-cpp --enable-utf --enable-unicode-properties" moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.3.0.eb index 871d373c07e239c49385a39dba53307b5c9a054b..97cfc3e3dd0b0c2895229a47c81c5299570d045b 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.3.0.eb @@ -13,6 +13,6 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = ['http://prdownloads.sourceforge.net/pcre'] sources = [SOURCELOWER_TAR_GZ] -configopts = "--with-pic --disable-cpp" +configopts = "--with-pic --disable-cpp --enable-utf --enable-unicode-properties" moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.5.0.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.5.0.eb index 365ae1e42a966e5feb64cf2d21924e35ca6043e1..c8297a55fa6ea2af525f33a37aef7d1c7086d8c6 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.12-ictce-5.5.0.eb @@ -13,6 +13,6 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = ['http://prdownloads.sourceforge.net/pcre'] sources = [SOURCELOWER_TAR_GZ] -configopts = "--with-pic --disable-cpp" +configopts = "--with-pic --disable-cpp --enable-utf --enable-unicode-properties" moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.35-intel-2014b.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.35-intel-2014b.eb index a4df16eaada18086aca6026c399b45256e24c3a2..4db7f55f630fe0b63bee447740a21f0ff7705add 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.35-intel-2014b.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.35-intel-2014b.eb @@ -13,6 +13,6 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] -configopts = "--with-pic --disable-cpp" +configopts = "--with-pic --disable-cpp --enable-utf --enable-unicode-properties" moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.36-foss-2015a.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.36-foss-2015a.eb index 7881c04da420044f2a9277d589e959b39d66b53b..bb1b441bcde35ee97c274a67f2c4ec027c353cc9 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.36-foss-2015a.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.36-foss-2015a.eb @@ -13,6 +13,6 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] -configopts = "--with-pic --disable-cpp" +configopts = "--with-pic --disable-cpp --enable-utf --enable-unicode-properties" moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.36-intel-2015a.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.36-intel-2015a.eb index f2529df084483600e9dc344a55d96031cd95b5c5..968b4462f3b822ce5c37e21e105bd2033c13861e 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.36-intel-2015a.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.36-intel-2015a.eb @@ -13,6 +13,6 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] -configopts = "--with-pic --disable-cpp" +configopts = "--with-pic --disable-cpp --enable-utf --enable-unicode-properties" moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.37-foss-2015a.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.37-foss-2015a.eb index 58ef584548b858ef89b576aba21cc754b1fddfae..2142c1c7b59edbfeb55c9a79ab850cb4ac5b9eac 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.37-foss-2015a.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.37-foss-2015a.eb @@ -13,6 +13,6 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] -configopts = "--with-pic --disable-cpp" +configopts = "--with-pic --disable-cpp --enable-utf --enable-unicode-properties" moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.37-intel-2015a.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.37-intel-2015a.eb index 1218fbc5d1c47fda816cc3f31c3d49b8c81930f5..7e31b8922b3b8e936b7bf76fb7e58c3b1a7081cd 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.37-intel-2015a.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.37-intel-2015a.eb @@ -13,6 +13,6 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] -configopts = "--with-pic --disable-cpp" +configopts = "--with-pic --disable-cpp --enable-utf --enable-unicode-properties" moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.37-intel-2015b.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.37-intel-2015b.eb index ac1733e9122a11105150ad7ab0bd04e00b91ec39..1be2911b8bd50c316d243ec2e189f2efebf918e9 100644 --- a/easybuild/easyconfigs/p/PCRE/PCRE-8.37-intel-2015b.eb +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.37-intel-2015b.eb @@ -15,6 +15,6 @@ toolchainopts = {'optarch': True, 'pic': True} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] -configopts = "--with-pic --disable-cpp" +configopts = "--with-pic --disable-cpp --enable-utf --enable-unicode-properties" moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PCRE/PCRE-8.38-intel-2016a.eb b/easybuild/easyconfigs/p/PCRE/PCRE-8.38-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..12bd040e3cdcce6917583e7eff026459086c99ec --- /dev/null +++ b/easybuild/easyconfigs/p/PCRE/PCRE-8.38-intel-2016a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = 'PCRE' +version = '8.38' + +homepage = 'http://www.pcre.org/' +description = """ + The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax + and semantics as Perl 5. +""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic --disable-cpp --enable-utf --enable-unicode-properties" + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 18d3b422b6a7718cb72c366fde3ff5092ae6ac9b..c4c168cc77ff6ba41e4a6237b3836046f4ecc495 100644 --- a/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -13,15 +13,15 @@ source_urls = ['http://ftp.mcs.anl.gov/pub/petsc/release-snapshots'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ - ('Boost', '1.49.0', versionsuffix), - ('FIAT', '1.0.0', versionsuffix), - ('METIS', '5.0.2'), - ('ParMETIS', '4.0.2'), - ('ScientificPython', '2.8', versionsuffix), - ('SCOTCH', '5.1.12b_esmumps'), - ('SuiteSparse', '3.7.0', '-withparmetis'), # for CHOLMOD, UMFPACK - ('Hypre', '2.8.0b'), - ] + ('Boost', '1.49.0', versionsuffix), + ('FIAT', '1.0.0', versionsuffix), + ('METIS', '5.0.2'), + ('ParMETIS', '4.0.2'), + ('ScientificPython', '2.8', versionsuffix), + ('SCOTCH', '5.1.12b_esmumps'), + ('SuiteSparse', '3.7.0', '-withparmetis'), # for CHOLMOD, UMFPACK + ('Hypre', '2.8.0b'), +] patches = ['PETSc_ranlib-fix.patch'] diff --git a/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-ictce-4.0.6-Python-2.7.3.eb index 268ce3ce62d898cc68255b9f3e823a689729ff15..d89cdda6370ebd4cd658b4bd92e5d0edc82a8de1 100644 --- a/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-ictce-4.0.6-Python-2.7.3.eb @@ -13,15 +13,15 @@ source_urls = ['http://ftp.mcs.anl.gov/pub/petsc/release-snapshots'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ - ('Boost', '1.49.0', versionsuffix), - ('FIAT', '1.0.0', versionsuffix), - ('METIS', '5.0.2'), - ('ParMETIS', '4.0.2'), - ('ScientificPython', '2.8', versionsuffix), - ('SCOTCH', '5.1.12b_esmumps'), - ('SuiteSparse', '3.7.0', '-withparmetis'), # for CHOLMOD, UMFPACK - ('Hypre', '2.8.0b'), - ] + ('Boost', '1.49.0', versionsuffix), + ('FIAT', '1.0.0', versionsuffix), + ('METIS', '5.0.2'), + ('ParMETIS', '4.0.2'), + ('ScientificPython', '2.8', versionsuffix), + ('SCOTCH', '5.1.12b_esmumps'), + ('SuiteSparse', '3.7.0', '-withparmetis'), # for CHOLMOD, UMFPACK + ('Hypre', '2.8.0b'), +] patches = ['PETSc_ranlib-fix.patch'] diff --git a/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-ictce-5.3.0-Python-2.7.3.eb index eae0fe6ff43a4c440a4d11886a36ba0a71472043..193d113315c25ffb731d7264eebb623f710dd0b0 100644 --- a/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/PETSc/PETSc-3.3-p2-ictce-5.3.0-Python-2.7.3.eb @@ -14,15 +14,15 @@ source_urls = ['http://ftp.mcs.anl.gov/pub/petsc/release-snapshots'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ - ('Boost', '1.49.0', versionsuffix), - ('FIAT', '1.0.0', versionsuffix), - ('METIS', '5.0.2'), - ('ParMETIS', '4.0.2'), - ('ScientificPython', '2.8', versionsuffix), - ('SCOTCH', '5.1.12b_esmumps'), - ('SuiteSparse', '3.7.0', '-withparmetis'), # for CHOLMOD, UMFPACK - ('Hypre', '2.8.0b'), - ] + ('Boost', '1.49.0', versionsuffix), + ('FIAT', '1.0.0', versionsuffix), + ('METIS', '5.0.2'), + ('ParMETIS', '4.0.2'), + ('ScientificPython', '2.8', versionsuffix), + ('SCOTCH', '5.1.12b_esmumps'), + ('SuiteSparse', '3.7.0', '-withparmetis'), # for CHOLMOD, UMFPACK + ('Hypre', '2.8.0b'), +] patches = ['PETSc_ranlib-fix.patch'] diff --git a/easybuild/easyconfigs/p/PETSc/PETSc-3.5.1-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/p/PETSc/PETSc-3.5.1-intel-2014b-Python-2.7.8.eb index 4cff265549c1762145116e523f795cff5e87feef..72b0ef23a93edafacd6a838a1060721b70d327b8 100644 --- a/easybuild/easyconfigs/p/PETSc/PETSc-3.5.1-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/p/PETSc/PETSc-3.5.1-intel-2014b-Python-2.7.8.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] patches = [ 'PETSc_ranlib-fix.patch', 'PETSc-%(version)s-zlibfix.patch', -] +] parmetis = 'ParMETIS' parmetis_ver = '4.0.3' diff --git a/easybuild/easyconfigs/p/PETSc/PETSc-3.6.3-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/p/PETSc/PETSc-3.6.3-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..8bab727ff29245a7858e50fdf93a001a203e3830 --- /dev/null +++ b/easybuild/easyconfigs/p/PETSc/PETSc-3.6.3-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,32 @@ +name = 'PETSc' +version = '3.6.3' +versionsuffix = '-Python-2.7.11' + +homepage = 'http://www.mcs.anl.gov/petsc' +description = """PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the + scalable (parallel) solution of scientific applications modeled by partial differential equations.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'usempi': True, 'pic': True} + +source_urls = ['http://ftp.mcs.anl.gov/pub/petsc/release-snapshots'] +sources = [SOURCELOWER_TAR_GZ] + +patches = ['PETSc_ranlib-fix.patch'] + +parmetis = 'ParMETIS' +parmetis_ver = '4.0.3' +dependencies = [ + ('Boost', '1.59.0', versionsuffix), + ('ScientificPython', '2.9.4', versionsuffix), + ('FIAT', '1.6.0', versionsuffix), + ('METIS', '5.1.0'), + (parmetis, parmetis_ver), + ('SCOTCH', '6.0.4'), + ('SuiteSparse', '4.4.6', '-%s-%s' % (parmetis, parmetis_ver)), + ('Hypre', '2.10.1'), +] + +builddependencies = [('CMake', '3.4.1')] + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/p/PGI/PGI-15.10-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/p/PGI/PGI-15.10-GCC-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..49864adcd321be1f4c402c2d4fe03662d3bdf02f --- /dev/null +++ b/easybuild/easyconfigs/p/PGI/PGI-15.10-GCC-4.9.3-2.25.eb @@ -0,0 +1,25 @@ +name = 'PGI' +version = '15.10' + +homepage = 'http://www.pgroup.com/' +description = "C, C++ and Fortran compilers from The Portland Group - PGI" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['pgilinux-20%(version_major)s-%(version_major)s%(version_minor)s-x86_64.tar.gz'] +checksums = ['cae307f7ad467a1811a5d5da758048ab'] + +gccver = '4.9.3' +binutilsver = '2.25' +versionsuffix = '-GCC-%s-%s' % (gccver, binutilsver) + +dependencies = [ + ('GCCcore', gccver), + ('binutils', binutilsver, '', ('GCCcore', gccver)), +] + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "pgi", "license.dat") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/p/PGI/PGI-15.7-GNU-4.9.2-2.25.eb b/easybuild/easyconfigs/p/PGI/PGI-15.7-GNU-4.9.2-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..d3260f31f88f55488164307720bd1b96e40bcda5 --- /dev/null +++ b/easybuild/easyconfigs/p/PGI/PGI-15.7-GNU-4.9.2-2.25.eb @@ -0,0 +1,21 @@ +name = 'PGI' +version = '15.7' + +homepage = 'http://www.pgroup.com/' +description = "C, C++ and Fortran compilers from The Portland Group - PGI" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['pgilinux-20%(version_major)s-%(version_major)s%(version_minor)s-x86_64.tar.gz'] + +gnu = 'GNU' +gnuver = '4.9.2-2.25' +versionsuffix = '-%s-%s' % (gnu, gnuver) + +dependencies = [(gnu, gnuver)] + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "pgi", "license.dat") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/p/PGI/PGI-15.7-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/p/PGI/PGI-15.7-GNU-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..6589eba972142296011c7f1c7061dfab74410f1a --- /dev/null +++ b/easybuild/easyconfigs/p/PGI/PGI-15.7-GNU-4.9.3-2.25.eb @@ -0,0 +1,21 @@ +name = 'PGI' +version = '15.7' + +homepage = 'http://www.pgroup.com/' +description = "C, C++ and Fortran compilers from The Portland Group - PGI" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['pgilinux-20%(version_major)s-%(version_major)s%(version_minor)s-x86_64.tar.gz'] + +gnu = 'GNU' +gnuver = '4.9.3-2.25' +versionsuffix = '-%s-%s' % (gnu, gnuver) + +dependencies = [(gnu, gnuver)] + +# license file +import os +license_file = os.path.join(os.getenv('HOME'), "licenses", "pgi", "license.dat") + +moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-find-deps.patch b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-find-deps.patch new file mode 100644 index 0000000000000000000000000000000000000000..ac98c7fa89fa5d5b535322ecf408c856b40fcd8a --- /dev/null +++ b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-find-deps.patch @@ -0,0 +1,31 @@ +# let PIL finds the EB deps +# By Ward Poelmans +diff -ur Imaging-1.1.7.orig/setup.py Imaging-1.1.7/setup.py +--- Imaging-1.1.7.orig/setup.py 2009-11-15 17:06:10.000000000 +0100 ++++ Imaging-1.1.7/setup.py 2016-01-07 12:29:07.708559953 +0100 +@@ -14,6 +14,8 @@ + pass + + def libinclude(root): ++ if not root: ++ return None + # map root to (root/lib, root/include) + return os.path.join(root, "lib"), os.path.join(root, "include") + +@@ -33,11 +35,11 @@ + # + # TIFF_ROOT = libinclude("/opt/tiff") + +-TCL_ROOT = None +-JPEG_ROOT = None +-ZLIB_ROOT = None +-TIFF_ROOT = None +-FREETYPE_ROOT = None ++TCL_ROOT = libinclude(os.getenv("EBROOTTCL")) ++JPEG_ROOT = libinclude(os.getenv("EBROOTLIBJPEGMINTURBO")) ++ZLIB_ROOT = libinclude(os.getenv("EBROOTZLIB")) ++TIFF_ROOT = libinclude(os.getenv("EBROOTLIBTIFF")) ++FREETYPE_ROOT = libinclude(os.getenv("EBROOTFREETYPE")) + LCMS_ROOT = None + + # FIXME: add mechanism to explicitly *disable* the use of a library diff --git a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-intel-2015b-Python-2.7.10.eb index fbe47598f679c36c8a837978c29fe19165b2e14a..087b2efa58a86f07f14c0fbfda1ddd8c1340591b 100644 --- a/easybuild/easyconfigs/p/PIL/PIL-1.1.7-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/p/PIL/PIL-1.1.7-intel-2015b-Python-2.7.10.eb @@ -12,9 +12,17 @@ toolchain = {'name': 'intel', 'version': '2015b'} source_urls = ['http://effbot.org/downloads/'] sources = ['Imaging-%(version)s.tar.gz'] +patches = ['PIL-%(version)s-find-deps.patch'] + pyver = '2.7.10' versionsuffix = '-Python-%s' % pyver -dependencies = [('Python', pyver)] +dependencies = [ + ('zlib', '1.2.8'), + ('Python', pyver), + ('libjpeg-turbo', '1.4.2'), + # currently not used because of dependency hell + # ('freetype', '2.6.1'), +] options = {'modulename': 'PIL'} diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2015b.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..3dbf1f6dcc42ec05a02b64bfd237b91ed53a1cfe --- /dev/null +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-foss-2015b.eb @@ -0,0 +1,51 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# Author: Adam Huffman +# The Francis Crick Institute + +easyblock = 'MakeCp' + +name = 'PLINK' +version = '1.07' + +homepage = 'http://pngu.mgh.harvard.edu/~purcell/plink/' +description = """ PLINK is a free, open-source whole genome association analysis toolset, + designed to perform a range of basic, large-scale analyses in a computationally efficient manner. + The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for + steps prior to this (e.g. study design and planning, generating genotype or CNV calls from raw data). + Through integration with gPLINK and Haploview, there is some support for the subsequent visualization, + annotation and storage of results. """ + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'openmp': True} + +sources = ['%(namelower)s-%(version)s-src.zip'] +source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] + +patches = ['PLINK-1.07_redeclaration.patch'] + +dependencies = [('zlib', '1.2.8')] + +# plink makefile is a little bit tricky so we pass every options as arguments +# review plink original makefile for details +# if you want "new version check" change to WITH_WEBCHECK="1", but if your compute nodes +# have no internet access better leave it as is +buildopts = ' CXX_UNIX="$CXX $CXXFLAGS" WITH_R_PLUGINS=1 WITH_WEBCHECK="" WITH_ZLIB=1 ' +buildopts += ' WITH_LAPACK=1 FORCE_DYNAMIC=1 LIB_LAPACK=$EBROOTOPENBLAS/lib/libopenblas.%s' % SHLIB_EXT + +files_to_copy = [ + (["plink", "gPLINK.jar"], 'bin'), + "test.map", + "test.ped", + "COPYING.txt", + "README.txt", +] + +sanity_check_paths = { + 'files': ["bin/plink", "bin/gPLINK.jar", "test.map", "test.ped", "COPYING.txt", "README.txt"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-goalf-1.1.0-no-OFED.eb index 608da74a7b7a4b1962e6ea00dc9683eb0975a66c..71cade10ffdae658b308f3c51c6cf056d8fbf53c 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-goalf-1.1.0-no-OFED.eb @@ -6,7 +6,7 @@ # License:: MIT/GPL # ## -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'PLINK' version = '1.07' diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb index f40f41e97886c6a751c8f13c3ea102dd1418dadc..136c6e53e0f3000ba11c397f8f15e50f9f7e0f4d 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-5.3.0.eb @@ -6,7 +6,7 @@ # License:: MIT/GPL # ## -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'PLINK' version = '1.07' diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb index 9454cdc7820dd24c7fb1243298dede04cc1fbe7f..0a3b48db5b713e79644b50e7c0e1287bf37305ee 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-ictce-6.2.5.eb @@ -3,7 +3,7 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'PLINK' version = '1.07' @@ -25,7 +25,7 @@ source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] dependencies = [('zlib', '1.2.8')] # plink makefile is a little bit tricky so we pass every options as arguments -# review plink original makefile for details +# review plink original makefile for details # if you want "new version check" change to WITH_WEBCHECK="1", but if your compute nodes # have no internet access better leave it as is buildopts = ' CXX_UNIX="$CXX $CXXFLAGS" WITH_R_PLUGINS=1 WITH_WEBCHECK="" WITH_ZLIB=1 ' diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-x86_64.eb b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-x86_64.eb index 50bb76fbb335ca5b24752327a4eac513666913cc..7f7c8b29a2133f6367d22e7fe0d05220d301e291 100644 --- a/easybuild/easyconfigs/p/PLINK/PLINK-1.07-x86_64.eb +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07-x86_64.eb @@ -14,7 +14,7 @@ source_urls = ['http://pngu.mgh.harvard.edu/~purcell/plink/dist/'] checksums = ['fd0bafeda42151b20534e4f97b0d97df'] files_to_copy = [ - 'plink', + 'plink', 'gPLINK.jar', 'test.map', 'test.ped', diff --git a/easybuild/easyconfigs/p/PLINK/PLINK-1.07_redeclaration.patch b/easybuild/easyconfigs/p/PLINK/PLINK-1.07_redeclaration.patch new file mode 100644 index 0000000000000000000000000000000000000000..9ba80c7478b8d16431c0a19dec49e6898a5e612d --- /dev/null +++ b/easybuild/easyconfigs/p/PLINK/PLINK-1.07_redeclaration.patch @@ -0,0 +1,75 @@ +Taken from https://github.com/Homebrew/homebrew-science/pull/958 + +This fixes code in PLINK that causes errors when building with +GCC >= 4.8. + +The patch is itself derived from Debian originally. + +diff --git a/sets.cpp b/sets.cpp +index 3a8f92f..adef60f 100644 +--- a/sets.cpp ++++ b/sets.cpp +@@ -768,11 +768,11 @@ vector_t Set::profileTestScore() + ////////////////////////////////////////////// + // Reset original missing status + +- vector::iterator i = PP->sample.begin(); +- while ( i != PP->sample.end() ) ++ vector::iterator i_iter = PP->sample.begin(); ++ while ( i_iter != PP->sample.end() ) + { +- (*i)->missing = (*i)->flag; +- ++i; ++ (*i_iter)->missing = (*i_iter)->flag; ++ ++i_iter; + } + + //////////////////////////////////////////////// +diff --git a/elf.cpp b/elf.cpp +index ec2ed3d..49bda44 100644 +--- a/elf.cpp ++++ b/elf.cpp +@@ -1175,10 +1175,10 @@ void Plink::elfBaseline() + << setw(8) << gcnt << " " + << setw(8) << (double)cnt / (double)gcnt << "\n"; + +- map::iterator i = chr_cnt.begin(); +- while ( i != chr_cnt.end() ) ++ map::iterator i_iter = chr_cnt.begin(); ++ while ( i_iter != chr_cnt.end() ) + { +- int c = i->first; ++ int c = i_iter->first; + int x = chr_cnt.find( c )->second; + int y = chr_gcnt.find( c )->second; + +@@ -1189,7 +1189,7 @@ void Plink::elfBaseline() + << setw(8) << y << " " + << setw(8) << (double)x / (double)y << "\n"; + +- ++i; ++ ++i_iter; + } + + } +diff --git a/idhelp.cpp b/idhelp.cpp +index a9244fa..8353c9e 100644 +--- a/idhelp.cpp ++++ b/idhelp.cpp +@@ -772,12 +772,12 @@ void IDHelper::idHelp() + for (int j = 0 ; j < jointField.size(); j++ ) + { + set & jf = jointField[j]; +- set::iterator j = jf.begin(); ++ set::iterator j_iter = jf.begin(); + PP->printLOG(" { "); +- while ( j != jf.end() ) ++ while ( j_iter != jf.end() ) + { +- PP->printLOG( (*j)->name + " " ); +- ++j; ++ PP->printLOG( (*j_iter)->name + " " ); ++ ++j_iter; + } + PP->printLOG(" }"); + } diff --git a/easybuild/easyconfigs/p/PLUMED/PLUMED-2.0.4-ictce-7.1.2.eb b/easybuild/easyconfigs/p/PLUMED/PLUMED-2.0.4-ictce-7.1.2.eb index e6ac2070ea914340d95b3e4dda1cdaee8fd6d4ba..e4e68f12e8db0aca7bf3f0506c1c417c82c9d724 100644 --- a/easybuild/easyconfigs/p/PLUMED/PLUMED-2.0.4-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/p/PLUMED/PLUMED-2.0.4-ictce-7.1.2.eb @@ -26,10 +26,10 @@ prebuildopts = " ./configure.sh linux.icc && source sourceme.sh && " preinstallopts = " export PLUMED_PREFIX=%(installdir)s && " sanity_check_paths = { - 'files': ['bin/plumed', 'lib/libplumedKernel.so', 'lib/libplumed.so'], + 'files': ['bin/plumed', 'lib/libplumedKernel.%s' % SHLIB_EXT, 'lib/libplumed.%s' % SHLIB_EXT], 'dirs': ['lib/plumed'] } -modextrapaths = {'PLUMED_KERNEL': 'lib/libplumedKernel.so'} +modextrapaths = {'PLUMED_KERNEL': 'lib/libplumedKernel.%s' % SHLIB_EXT} moduleclass = 'chem' diff --git a/easybuild/easyconfigs/p/PLUMED/PLUMED-2.1.3-intel-2015a.eb b/easybuild/easyconfigs/p/PLUMED/PLUMED-2.1.3-intel-2015a.eb index 89a5511e514fa9695c53d198d3fa8f9aeeddc37d..d87b961730ae9acf36822487fee3e486f9a5dc81 100644 --- a/easybuild/easyconfigs/p/PLUMED/PLUMED-2.1.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/PLUMED/PLUMED-2.1.3-intel-2015a.eb @@ -27,10 +27,10 @@ prebuildopts = " ./configure.sh linux.mpi.icc && source sourceme.sh && " preinstallopts = " export PLUMED_PREFIX=%(installdir)s && " sanity_check_paths = { - 'files': ['bin/plumed', 'lib/libplumedKernel.so', 'lib/libplumed.so'], + 'files': ['bin/plumed', 'lib/libplumedKernel.%s' % SHLIB_EXT, 'lib/libplumed.%s' % SHLIB_EXT], 'dirs': ['lib/plumed'] } -modextrapaths = {'PLUMED_KERNEL': 'lib/libplumedKernel.so'} +modextrapaths = {'PLUMED_KERNEL': 'lib/libplumedKernel.%s' % SHLIB_EXT} moduleclass = 'chem' diff --git a/easybuild/easyconfigs/p/PLUMED/PLUMED-2.1.4-foss-2015b.eb b/easybuild/easyconfigs/p/PLUMED/PLUMED-2.1.4-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..9cac08c076f5b5de372c817ae126ea7992ae7c4d --- /dev/null +++ b/easybuild/easyconfigs/p/PLUMED/PLUMED-2.1.4-foss-2015b.eb @@ -0,0 +1,42 @@ +# by Ward Poelmans + +easyblock = 'ConfigureMake' + +name = 'PLUMED' +version = '2.1.4' + +homepage = 'http://www.plumed-code.org' +description = """PLUMED is an open source library for free energy calculations in molecular systems which + works together with some of the most popular molecular dynamics engines. Free energy calculations can be + performed as a function of many order parameters with a particular focus on biological problems, using + state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. + The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. +""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'usempi': 'True'} + +source_urls = ['https://github.com/plumed/plumed2/archive/'] +sources = ['v%(version)s.tar.gz'] + +dependencies = [ + ('zlib', '1.2.8'), + ('GSL', '1.16'), + ('libmatheval', '1.1.11'), +] + +preconfigopts = 'FC=$MPIF90 LIBS="$LIBLAPACK $LIBS" ' +configopts = ' --exec-prefix=%(installdir)s --enable-gsl' +prebuildopts = 'source sourceme.sh && ' + +sanity_check_paths = { + 'files': ['bin/plumed', 'lib/libplumedKernel.%s' % SHLIB_EXT, 'lib/libplumed.%s' % SHLIB_EXT], + 'dirs': ['lib/plumed'] +} + +modextrapaths = { + 'PLUMED_KERNEL': 'lib/libplumedKernel.%s' % SHLIB_EXT, + 'PLUMED_ROOT': 'lib/plumed', +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/p/PLUMED/PLUMED-2.2.0-intel-2015b.eb b/easybuild/easyconfigs/p/PLUMED/PLUMED-2.2.0-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..c6b4f4fabd6169e02d59003a044b12f5318bff83 --- /dev/null +++ b/easybuild/easyconfigs/p/PLUMED/PLUMED-2.2.0-intel-2015b.eb @@ -0,0 +1,42 @@ +# by Ward Poelmans + +easyblock = 'ConfigureMake' + +name = 'PLUMED' +version = '2.2.0' + +homepage = 'http://www.plumed-code.org' +description = """PLUMED is an open source library for free energy calculations in molecular systems which + works together with some of the most popular molecular dynamics engines. Free energy calculations can be + performed as a function of many order parameters with a particular focus on biological problems, using + state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. + The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. +""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'usempi': 'True'} + +source_urls = ['https://github.com/plumed/plumed2/archive/'] +sources = ['v%(version)s.tar.gz'] + +dependencies = [ + ('zlib', '1.2.8'), + ('GSL', '1.16'), + ('libmatheval', '1.1.11'), +] + +preconfigopts = 'FC=$MPIF90 LIBS="$LIBLAPACK $LIBS" ' +configopts = ' --exec-prefix=%(installdir)s --enable-gsl' +prebuildopts = 'source sourceme.sh && ' + +sanity_check_paths = { + 'files': ['bin/plumed', 'lib/libplumedKernel.%s' % SHLIB_EXT, 'lib/libplumed.%s' % SHLIB_EXT], + 'dirs': ['lib/plumed'] +} + +modextrapaths = { + 'PLUMED_KERNEL': 'lib/libplumedKernel.%s' % SHLIB_EXT, + 'PLUMED_ROOT': 'lib/plumed', +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/p/PLUMED/PLUMED-2.2.1-foss-2015b.eb b/easybuild/easyconfigs/p/PLUMED/PLUMED-2.2.1-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..f3480b9f428573e29ab9f12164b8511f8425617b --- /dev/null +++ b/easybuild/easyconfigs/p/PLUMED/PLUMED-2.2.1-foss-2015b.eb @@ -0,0 +1,42 @@ +# by Ward Poelmans + +easyblock = 'ConfigureMake' + +name = 'PLUMED' +version = '2.2.1' + +homepage = 'http://www.plumed-code.org' +description = """PLUMED is an open source library for free energy calculations in molecular systems which + works together with some of the most popular molecular dynamics engines. Free energy calculations can be + performed as a function of many order parameters with a particular focus on biological problems, using + state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. + The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. +""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'usempi': 'True'} + +source_urls = ['https://github.com/plumed/plumed2/archive/'] +sources = ['v%(version)s.tar.gz'] + +dependencies = [ + ('zlib', '1.2.8'), + ('GSL', '2.1'), + ('libmatheval', '1.1.11'), +] + +preconfigopts = 'FC=$MPIF90 LIBS="$LIBLAPACK $LIBS" ' +configopts = ' --exec-prefix=%(installdir)s --enable-gsl' +prebuildopts = 'source sourceme.sh && ' + +sanity_check_paths = { + 'files': ['bin/plumed', 'lib/libplumedKernel.%s' % SHLIB_EXT, 'lib/libplumed.%s' % SHLIB_EXT], + 'dirs': ['lib/plumed'] +} + +modextrapaths = { + 'PLUMED_KERNEL': 'lib/libplumedKernel.%s' % SHLIB_EXT, + 'PLUMED_ROOT': 'lib/plumed', +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/p/PLUMED/PLUMED-2.2.1-intel-2015b.eb b/easybuild/easyconfigs/p/PLUMED/PLUMED-2.2.1-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..a8664f7399080fd7b6a5e8097efc264d8a247abd --- /dev/null +++ b/easybuild/easyconfigs/p/PLUMED/PLUMED-2.2.1-intel-2015b.eb @@ -0,0 +1,42 @@ +# by Ward Poelmans + +easyblock = 'ConfigureMake' + +name = 'PLUMED' +version = '2.2.1' + +homepage = 'http://www.plumed-code.org' +description = """PLUMED is an open source library for free energy calculations in molecular systems which + works together with some of the most popular molecular dynamics engines. Free energy calculations can be + performed as a function of many order parameters with a particular focus on biological problems, using + state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. + The software, written in C++, can be easily interfaced with both fortran and C/C++ codes. +""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'usempi': 'True'} + +source_urls = ['https://github.com/plumed/plumed2/archive/'] +sources = ['v%(version)s.tar.gz'] + +dependencies = [ + ('zlib', '1.2.8'), + ('GSL', '2.1'), + ('libmatheval', '1.1.11'), +] + +preconfigopts = 'FC=$MPIF90 LIBS="$LIBLAPACK $LIBS" ' +configopts = ' --exec-prefix=%(installdir)s --enable-gsl' +prebuildopts = 'source sourceme.sh && ' + +sanity_check_paths = { + 'files': ['bin/plumed', 'lib/libplumedKernel.%s' % SHLIB_EXT, 'lib/libplumed.%s' % SHLIB_EXT], + 'dirs': ['lib/plumed'] +} + +modextrapaths = { + 'PLUMED_KERNEL': 'lib/libplumedKernel.%s' % SHLIB_EXT, + 'PLUMED_ROOT': 'lib/plumed', +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/p/PLY/PLY-3.8-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/p/PLY/PLY-3.8-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..a7d3815c2c2a1949cc4584dcdf2004fa762f8780 --- /dev/null +++ b/easybuild/easyconfigs/p/PLY/PLY-3.8-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,26 @@ +easyblock = 'PythonPackage' + +name = 'PLY' +version = '3.8' + +homepage = "http://www.dabeaz.com/ply/" +description = """PLY is yet another implementation of lex and yacc for Python.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +pyver = '2.7.11' + +versionsuffix = "-Python-%s" % pyver + +dependencies = [('Python', pyver)] + +py_short_ver = '.'.join(pyver.split('.')[:2]) +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages' % py_short_ver], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb index 849c3d613e2ee8adc8eb6b6fb5198aff52f31936..1cdadae78c70b957483dfc5857c52968c900b672 100644 --- a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-goolf-1.4.10.eb @@ -29,7 +29,7 @@ dependencies = [ ('tcsh', '6.18.01'), ('Tcl', '8.5.12'), ('Tk', '8.5.12'), - ('netCDF', '4.1.3'), # this one will also bring in HDF5 + ('netCDF', '4.1.3'), # this one will also bring in HDF5 ('Perl', '5.16.3'), ] diff --git a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb index 63cc6c8164b31069dd2ff65826d2c34bc6f2fc60..6807550e34fa4f7c017beb030462f0a75d3fd75c 100644 --- a/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PRACE/PRACE-20130605-ictce-5.3.0.eb @@ -29,7 +29,7 @@ dependencies = [ ('tcsh', '6.18.01'), ('Tcl', '8.5.12'), ('Tk', '8.5.12'), - ('netCDF', '4.1.3'), # this one will also bring in HDF5 + ('netCDF', '4.1.3'), # this one will also bring in HDF5 ('Perl', '5.16.3'), ] diff --git a/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-goolf-1.4.10-Perl-5.16.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..fc0341658f6343cf4ccf2b1e0c703af92b02cef7 --- /dev/null +++ b/easybuild/easyconfigs/p/PRINSEQ/PRINSEQ-0.20.4-goolf-1.4.10-Perl-5.16.3.eb @@ -0,0 +1,116 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'Tarball' + +name = 'PRINSEQ' +version = '0.20.4' + +homepage = 'http://prinseq.sourceforge.net' +description = """A bioinformatics tool to PRe-process and show INformation of SEQuence data.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://sourceforge.net/projects/prinseq/files/standalone/'] +sources = ['%(namelower)s-lite-%(version)s.tar.gz'] + +perl = 'Perl' +perlver = '5.16.3' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), +] + +# these are the perl libraries dependencies +exts_defaultclass = 'PerlModule' +exts_filter = ("perldoc -lm %(ext_name)s ", "") + +exts_list = [ + ('ExtUtils::Depends', '0.405', { + 'source_tmpl': 'ExtUtils-Depends-0.405.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/X/XA/XAOC/'], + }), + ('ExtUtils::PkgConfig', '1.15', { + 'source_tmpl': 'ExtUtils-PkgConfig-1.15.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/X/XA/XAOC/'], + }), + ('Getopt::Long', '2.48', { + 'source_tmpl': 'Getopt-Long-2.48.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JV/JV/'], + }), + ('Pod::Usage', '1.68', { + 'source_tmpl': 'Pod-Usage-1.68.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MAREKR/'], + }), + ('File::Temp', '0.2304', { + 'source_tmpl': 'File-Temp-0.2304.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN/'], + }), + ('Digest::MD5', '2.54', { + 'source_tmpl': 'Digest-MD5-2.54.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('File::Spec', '3.62', { + 'source_tmpl': 'PathTools-3.62.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS/'], + }), + ('JSON', '2.90', { + 'source_tmpl': 'JSON-2.90.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA/'], + }), + ('Cairo', '1.106', { + 'source_tmpl': 'Cairo-1.106.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/X/XA/XAOC/'], + }), + ('Statistics::PCA', '0.0.1', { + 'source_tmpl': 'Statistics-PCA-0.0.1.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSTH/'], + }), + ('MIME::Base64', '3.15', { + 'source_tmpl': 'MIME-Base64-3.15.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS/'], + }), + ('Math::Cephes::Matrix', '0.5304', { + 'source_tmpl': 'Math-Cephes-0.5304.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF/'], + }), + ('Math::MatrixReal', '2.12', { + 'source_tmpl': 'Math-MatrixReal-2.12.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LETO/'], + }), + ('Text::SimpleTable', '2.03', { + 'source_tmpl': 'Text-SimpleTable-2.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MR/MRAMBERG/'], + }), + ('Contextual::Return', '0.004008', { + 'source_tmpl': 'Contextual-Return-0.004008.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DC/DCONWAY/'], + }), + ('Want', '0.26', { + 'source_tmpl': 'Want-0.26.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN/'], + }), +] + +# this is the script which relies in many extra Perl libraries so we verify it's working fine +sanity_check_commands = [('perl', '%(installdir)s/prinseq-graphs.pl')] + +modextrapaths = { + 'PATH': "", # add installation dir to PATH + 'PERL5LIB': 'lib/perl5/site_perl/%s/' % (perlver) +} + +postinstallcmds = [ + "sed -i -e 's|/usr/bin/perl|/usr/bin/env\ perl|' %(installdir)s/*.pl", # fix shebang line + "chmod +x %(installdir)s/*.pl" # add execution permission +] + +sanity_check_paths = { + 'files': ['prinseq-lite.pl', 'prinseq-graphs.pl', 'prinseq-graphs-noPCA.pl'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-foss-2015b.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..8e0db7e9a170db6194c106e125e95c70a0144722 --- /dev/null +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-foss-2015b.eb @@ -0,0 +1,29 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2014-2015 The Cyprus Institute +# Authors:: Thekla Loizou +# License:: MIT/GPL +# +## +easyblock = 'ConfigureMake' + +name = 'PROJ' +version = '4.8.0' + +homepage = 'http://trac.osgeo.org/proj/' +description = """Program proj is a standard Unix filter function which converts +geographic longitude and latitude coordinates into cartesian coordinates""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'opt': True, 'pic': True, 'usempi': True} + +source_urls = ['http://download.osgeo.org/proj/'] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['bin/cs2cs', 'bin/geod', 'bin/invgeod', 'bin/invproj', + 'bin/nad2bin', 'bin/proj'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-goolf-1.4.10.eb index 2060e3874c7fc694274a63e808fd851725b2d1ec..34a1760e0e9adf7dc21d8d159b4cf3aadc4de2d7 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-goolf-1.4.10.eb @@ -22,7 +22,7 @@ source_urls = ['http://download.osgeo.org/proj/'] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['bin/cs2cs', 'bin/geod', 'bin/invgeod', 'bin/invproj', + 'files': ['bin/cs2cs', 'bin/geod', 'bin/invgeod', 'bin/invproj', 'bin/nad2bin', 'bin/proj'], 'dirs': [], } diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-ictce-5.3.0.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-ictce-5.3.0.eb index 427477bf963cc96c4830a83e4901011d9532ffc3..968d0aa66a1fcb4fe3d9f5cfe51fea5e52ae86db 100644 --- a/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.8.0-ictce-5.3.0.eb @@ -13,7 +13,7 @@ version = '4.8.0' homepage = 'http://trac.osgeo.org/proj/' description = """Program proj is a standard Unix filter function which converts -geographic longitude and latitude coordinates into cartesian coordinates""" +geographic longitude and latitude coordinates into cartesian coordinates""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True, 'pic': True, 'usempi': True} @@ -22,7 +22,7 @@ source_urls = ['http://download.osgeo.org/proj/'] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['bin/cs2cs', 'bin/geod', 'bin/invgeod', 'bin/invproj', + 'files': ['bin/cs2cs', 'bin/geod', 'bin/invgeod', 'bin/invproj', 'bin/nad2bin', 'bin/proj'], 'dirs': [], } diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.1-foss-2015a.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.1-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..ce218bd9f2f67a4d7202a617feafa4fc74329f11 --- /dev/null +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.1-foss-2015a.eb @@ -0,0 +1,30 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2014-2015 The Cyprus Institute +# Authors:: Thekla Loizou +# License:: MIT/GPL +# +## +easyblock = 'ConfigureMake' + +name = 'PROJ' +version = '4.9.1' + +homepage = 'http://trac.osgeo.org/proj/' +description = """Program proj is a standard Unix filter function which converts +geographic longitude and latitude coordinates into cartesian coordinates""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'opt': True, 'pic': True, 'usempi': True} + +source_urls = ['http://download.osgeo.org/proj/'] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['bin/cs2cs', 'bin/geod', 'bin/invgeod', 'bin/invproj', + 'bin/nad2bin', 'bin/proj'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016a.eb b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..67b8275d1e8c9e2009b14661827c3040d2ae269e --- /dev/null +++ b/easybuild/easyconfigs/p/PROJ/PROJ-4.9.2-intel-2016a.eb @@ -0,0 +1,30 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2014-2015 The Cyprus Institute +# Authors:: Thekla Loizou +# License:: MIT/GPL +# +## +easyblock = 'ConfigureMake' + +name = 'PROJ' +version = '4.9.2' + +homepage = 'http://trac.osgeo.org/proj/' +description = """Program proj is a standard Unix filter function which converts +geographic longitude and latitude coordinates into cartesian coordinates""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'opt': True, 'pic': True, 'usempi': True} + +source_urls = ['http://download.osgeo.org/proj/'] +sources = [SOURCELOWER_TAR_GZ] + +sanity_check_paths = { + 'files': ['bin/cs2cs', 'bin/geod', 'bin/invgeod', 'bin/invproj', + 'bin/nad2bin', 'bin/proj'], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb index 2550e2c13610d2eb234f0bfcb93fd789ea3718d0..5fa710dd00a96ecf742a2b7a55682cc42744d2f0 100644 --- a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150228-intel-2015a-mt.eb @@ -28,7 +28,7 @@ dependencies = [ builddependencies = [ ('CMake', '3.1.3'), - ('Perl', '5.20.1', '-bare'), # for the test suite + ('Perl', '5.20.1', '-bare'), # for the test suite ] # Execute only the 'quick' tests and run 4 in parallel diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150814-intel-2015a-mt-maxam7-Python-2.7.10.eb b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150814-intel-2015a-mt-maxam7-Python-2.7.10.eb index 46a224ce66c4a026cbb16f9d26644260978ae08d..77a45e9e57c1606d4998ad93c7c35da5dabeab28 100644 --- a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150814-intel-2015a-mt-maxam7-Python-2.7.10.eb +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20150814-intel-2015a-mt-maxam7-Python-2.7.10.eb @@ -31,7 +31,7 @@ dependencies = [ builddependencies = [ ('CMake', '3.2.3'), - ('Perl', '5.20.1', '-bare'), # for the test suite + ('Perl', '5.20.1', '-bare'), # for the test suite ] # Execute only the 'quick' tests and run 4 in parallel diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20160201-fix-gitversion.patch b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20160201-fix-gitversion.patch new file mode 100644 index 0000000000000000000000000000000000000000..93d3b7eab487a5e14e5db21f80ee8e536ffb7f9b --- /dev/null +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20160201-fix-gitversion.patch @@ -0,0 +1,12 @@ +# As we have a git version without the git metadata, we tell it which commit we have used +# by wpoely86@gmail.com +diff -ur psi4public-e4070d0024742579a445e084da9dde078310094d.orig/src/bin/psi4/gitversion.py psi4public-e4070d0024742579a445e084da9dde078310094d/src/bin/psi4/gitversion.py +--- psi4public-e4070d0024742579a445e084da9dde078310094d.orig/src/bin/psi4/gitversion.py 2016-02-01 22:43:36.000000000 +0100 ++++ psi4public-e4070d0024742579a445e084da9dde078310094d/src/bin/psi4/gitversion.py 2016-02-04 11:41:37.287312135 +0100 +@@ -104,4 +104,5 @@ + ghash = '' + mmp = '' + +-write_version(branch, mmp, ghash, status) ++#write_version(branch, mmp, ghash, status) ++write_version('master', None, 'e4070d002474257', '') diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20160201-intel-2016a-mt-Python-2.7.11.eb b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20160201-intel-2016a-mt-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..3f257ab0c149bcbc5384f3655c977f5fc4424505 --- /dev/null +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20160201-intel-2016a-mt-Python-2.7.11.eb @@ -0,0 +1,47 @@ +name = 'PSI' +version = '4.0b6-20160201' +versionsuffix = '-mt' + +homepage = 'http://www.psicode.org/' +description = """PSI4 is an open-source suite of ab initio quantum chemistry programs designed for + efficient, high-accuracy simulations of a variety of molecular properties. We can routinely perform + computations with more than 2500 basis functions running serially or in parallel.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'usempi': False} + +source_urls = ['https://github.com/psi4/psi4public/archive/'] +sources = ['e4070d0024742579.tar.gz'] + +patches = [ + 'PSI-%(version)s-fix-gitversion.patch', + 'PSI-%(version)s-plugin-fix.patch', +] + +python = 'Python' +pyver = '2.7.11' +pysuff = '-%s-%s' % (python, pyver) +versionsuffix += pysuff + +dependencies = [ + (python, pyver), + ('Boost', '1.59.0', pysuff), + ('PCMSolver', '20160205', pysuff), + ('CheMPS2', '1.6'), +] + +builddependencies = [ + ('CMake', '3.4.3'), + ('Perl', '5.22.1', '-bare'), # for the test suite +] + +configopts = '-DENABLE_MPI=OFF -DENABLE_OMP=ON -DENABLE_UNIT_TESTS=ON -DENABLE_CHEMPS2=ON -DENABLE_PLUGINS=ON' +configopts += ' -DENABLE_DUMMY_PLUGIN=ON -DCHEMPS2_ROOT=$EBROOTCHEMPS2' +configopts += ' -DENABLE_PCMSOLVER=ON -DPCMSOLVER_ROOT=$EBROOTPCMSOLVER' + +# Execute 4 tests in parallel +runtest = 'ARGS="-V -E \'opt10|pubchem1|pubchem2|pywrap-opt-sowreap|sapt4\' -j 4" test' + + + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20160201-plugin-fix.patch b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20160201-plugin-fix.patch new file mode 100644 index 0000000000000000000000000000000000000000..1cd68c1a98f7727fe0e48eb516a5d034d611a7ff --- /dev/null +++ b/easybuild/easyconfigs/p/PSI/PSI-4.0b6-20160201-plugin-fix.patch @@ -0,0 +1,14 @@ +# Let the plugin makefile system work with our install system: patch the +# directory path to correspond with our install directory +# 01/02/2016 - wpoely86@gmail.com +diff -ur psi4public-e4070d0024742579a445e084da9dde078310094d.orig/CMakeLists.txt psi4public-e4070d0024742579a445e084da9dde078310094d/CMakeLists.txt +--- psi4public-e4070d0024742579a445e084da9dde078310094d.orig/CMakeLists.txt 2016-02-01 22:43:36.000000000 +0100 ++++ psi4public-e4070d0024742579a445e084da9dde078310094d/CMakeLists.txt 2016-02-05 12:40:20.375508374 +0100 +@@ -282,6 +282,7 @@ + foreach(dir ${dirs}) + set(PLUGIN_INCLUDE_DIRECTORIES "-I${dir} ${PLUGIN_INCLUDE_DIRECTORIES}") + endforeach() ++set(PLUGIN_INCLUDE_DIRECTORIES "-I$ENV{PSI_SRC_INSTALL_DIR}/include -I$ENV{PSI_SRC_INSTALL_DIR}/src/lib/ -I$ENV{PSI_OBJ_INSTALL_DIR}/include -I$ENV{PSI_OBJ_INSTALL_DIR}/src/lib/ ${PLUGIN_INCLUDE_DIRECTORIES}") + foreach(def ${defs}) + set(PLUGIN_DEFINES "-D${def} ${PLUGIN_DEFINES}") + endforeach() diff --git a/easybuild/easyconfigs/p/PaStiX/PaStiX-5.2.2.22-intel-2015b.eb b/easybuild/easyconfigs/p/PaStiX/PaStiX-5.2.2.22-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..34d2da9e2f58d0ac27693129eec44da7255479bf --- /dev/null +++ b/easybuild/easyconfigs/p/PaStiX/PaStiX-5.2.2.22-intel-2015b.eb @@ -0,0 +1,42 @@ +easyblock = 'ConfigureMake' + +name = 'PaStiX' +version = '5.2.2.22' + +homepage = 'http://pastix.gforge.inria.fr/' +description = """PaStiX (Parallel Sparse matriX package) is a scientific library that provides a high performance + parallel solver for very large sparse linear systems based on direct methods.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'pic': True} + +source_urls = ['https://gforge.inria.fr/frs/download.php/file/35070/'] +sources = ['%(namelower)s_%(version)s.tar.bz2'] +checksums = ['85127ecdfaeed39e850c996b78573d94'] + +dependencies = [ + ('hwloc', '1.11.2', '', ('GNU', '4.9.3-2.25')), + ('SCOTCH', '6.0.4'), +] + +skipsteps = ['configure'] + +start_dir = 'src' + +prebuildopts = "cp -a config/LINUX-INTEL.in config.in && " +buildopts = 'BLASLIB="-L$BLAS_LIB_DIR $LIBBLAS" HWLOC_HOME=$EBROOTHWLOC SCOTCH_HOME=$EBROOTSCOTCH ' +# take control over compiler flags +buildopts += 'CCFOPT="$CFLAGS" ' +# fix value for $MPCXXPROG, default uses 'mpic++' which is incorrect +buildopts += 'MPCXXPROG="$MPICXX -cxx=$CXX -Wall" ' + +runtest = "examples && ./example/bin/simple -lap 100" + +installopts = "PREFIX=%(installdir)s" + +sanity_check_paths = { + 'files': ['bin/pastix-conf', 'lib/libmatrix_driver.a', 'lib/libpastix.a', 'lib/libpastix_murge.a'], + 'dirs': ['include'], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/p/Pango/Pango-1.36.7-intel-2014b.eb b/easybuild/easyconfigs/p/Pango/Pango-1.36.7-intel-2014b.eb index 76a476c789260cf72da2998aaf9840fde183c9b7..1dae0767df2fc89a40a6e384ad05380d86836eb1 100644 --- a/easybuild/easyconfigs/p/Pango/Pango-1.36.7-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Pango/Pango-1.36.7-intel-2014b.eb @@ -16,22 +16,22 @@ source_urls = [FTPGNOME_SOURCE] sources = [SOURCELOWER_TAR_XZ] dependencies = [ - ('cairo', '1.12.18'), - ('fontconfig', '2.11.1'), - ('freetype', '2.5.3'), - ('GLib', '2.40.0'), - ('HarfBuzz', '0.9.35'), - ('GObject-Introspection', '1.42.0'), - ('libXft', '2.3.2'), + ('cairo', '1.12.18'), + ('fontconfig', '2.11.1'), + ('freetype', '2.5.3'), + ('GLib', '2.40.0'), + ('HarfBuzz', '0.9.35'), + ('GObject-Introspection', '1.42.0'), + ('libXft', '2.3.2'), ] builddependencies = [ - ('M4', '1.4.17'), + ('M4', '1.4.17'), ] sanity_check_paths = { - 'files': ['bin/pango-view', 'lib/libpango-1.0.so', 'lib/libpangocairo-1.0.so', - 'lib/libpangoft2-1.0.so', 'lib/libpangoxft-1.0.so'], + 'files': ['bin/pango-view', 'lib/libpango-1.0.%s' % SHLIB_EXT, 'lib/libpangocairo-1.0.%s' % SHLIB_EXT, + 'lib/libpangoft2-1.0.%s' % SHLIB_EXT, 'lib/libpangoxft-1.0.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/p/Pango/Pango-1.37.2-intel-2015a.eb b/easybuild/easyconfigs/p/Pango/Pango-1.37.2-intel-2015a.eb index d1b5731cfff4e57495660a5f0342056359f00f8e..2a9ce4d26e295c7e41f9b155bb1c74e17f3d443f 100644 --- a/easybuild/easyconfigs/p/Pango/Pango-1.37.2-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Pango/Pango-1.37.2-intel-2015a.eb @@ -16,22 +16,22 @@ source_urls = [FTPGNOME_SOURCE] sources = [SOURCELOWER_TAR_XZ] dependencies = [ - ('cairo', '1.14.2'), - ('fontconfig', '2.11.94'), - ('freetype', '2.6'), - ('GLib', '2.44.1'), - ('HarfBuzz', '1.0.1'), - ('GObject-Introspection', '1.44.0'), - ('libXft', '2.3.2', '-libX11-1.6.3-Python-2.7.10'), + ('cairo', '1.14.2'), + ('fontconfig', '2.11.94'), + ('freetype', '2.6'), + ('GLib', '2.44.1'), + ('HarfBuzz', '1.0.1'), + ('GObject-Introspection', '1.44.0'), + ('libXft', '2.3.2', '-libX11-1.6.3-Python-2.7.10'), ] builddependencies = [ - ('M4', '1.4.17'), + ('M4', '1.4.17'), ] sanity_check_paths = { - 'files': ['bin/pango-view', 'lib/libpango-1.0.so', 'lib/libpangocairo-1.0.so', - 'lib/libpangoft2-1.0.so', 'lib/libpangoxft-1.0.so'], + 'files': ['bin/pango-view', 'lib/libpango-1.0.%s' % SHLIB_EXT, 'lib/libpangocairo-1.0.%s' % SHLIB_EXT, + 'lib/libpangoft2-1.0.%s' % SHLIB_EXT, 'lib/libpangoxft-1.0.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/p/Pango/Pango-1.38.1-intel-2015b.eb b/easybuild/easyconfigs/p/Pango/Pango-1.38.1-intel-2015b.eb index 85f56a97012d994d3137401bc3fbd4ca656e252c..cf2b642da8df7d76ac8970ec669675c415d64a27 100644 --- a/easybuild/easyconfigs/p/Pango/Pango-1.38.1-intel-2015b.eb +++ b/easybuild/easyconfigs/p/Pango/Pango-1.38.1-intel-2015b.eb @@ -16,22 +16,22 @@ source_urls = [FTPGNOME_SOURCE] sources = [SOURCELOWER_TAR_XZ] dependencies = [ - ('cairo', '1.14.4'), - ('fontconfig', '2.11.94', '-libpng-1.6.19'), - ('freetype', '2.6.1', '-libpng-1.6.19'), - ('GLib', '2.47.1'), - ('HarfBuzz', '1.1.0'), - ('GObject-Introspection', '1.47.1'), - ('libXft', '2.3.2', '-libX11-1.6.3-Python-2.7.10'), + ('cairo', '1.14.4'), + ('fontconfig', '2.11.94', '-libpng-1.6.19'), + ('freetype', '2.6.1', '-libpng-1.6.19'), + ('GLib', '2.47.1'), + ('HarfBuzz', '1.1.0'), + ('GObject-Introspection', '1.47.1'), + ('libXft', '2.3.2', '-libX11-1.6.3-Python-2.7.10'), ] builddependencies = [ - ('Autotools', '20150215', '', ('GNU', '4.9.3-2.25')), + ('Autotools', '20150215', '', ('GNU', '4.9.3-2.25')), ] sanity_check_paths = { - 'files': ['bin/pango-view', 'lib/libpango-1.0.so', 'lib/libpangocairo-1.0.so', - 'lib/libpangoft2-1.0.so', 'lib/libpangoxft-1.0.so'], + 'files': ['bin/pango-view', 'lib/libpango-1.0.%s' % SHLIB_EXT, 'lib/libpangocairo-1.0.%s' % SHLIB_EXT, + 'lib/libpangoft2-1.0.%s' % SHLIB_EXT, 'lib/libpangoxft-1.0.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/p/Pango/Pango-1.39.0-intel-2016a.eb b/easybuild/easyconfigs/p/Pango/Pango-1.39.0-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..3dc38160e5dd4014031eb13e7310bb3cb0ce956a --- /dev/null +++ b/easybuild/easyconfigs/p/Pango/Pango-1.39.0-intel-2016a.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'Pango' +version = '1.39.0' + +homepage = 'http://www.pango.org/' +description = """Pango is a library for laying out and rendering of text, with an emphasis on internationalization. +Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the +context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] + +glibver = '2.47.5' +dependencies = [ + ('GLib', glibver), + ('cairo', '1.14.6'), + ('HarfBuzz', '1.1.3'), + ('GObject-Introspection', '1.47.1'), + ('fontconfig', '2.11.94') +] + +configopts = "--disable-silent-rules --enable-introspection=yes --enable-static --enable-shared " + +modextrapaths = { + 'XDG_DATA_DIRS': 'share', +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/Pangomm/Pangomm-2.36.0-intel-2015a.eb b/easybuild/easyconfigs/p/Pangomm/Pangomm-2.36.0-intel-2015a.eb index 044fc1c671029a286e109155c513ae22d59f7496..d0dd1f99071aa8bc416f17e83100cf2e04cab078 100644 --- a/easybuild/easyconfigs/p/Pangomm/Pangomm-2.36.0-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Pangomm/Pangomm-2.36.0-intel-2015a.eb @@ -19,8 +19,8 @@ dependencies = [ sanity_check_paths = { - 'files': ['lib/libpangomm-1.4.so'], + 'files': ['lib/libpangomm-1.4.%s' % SHLIB_EXT], 'dirs': [], -} +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/Pangomm/Pangomm-2.36.0-intel-2015b.eb b/easybuild/easyconfigs/p/Pangomm/Pangomm-2.36.0-intel-2015b.eb index 09010410c9bb93e566e459eb7b583d56c3a9c52a..71f5cdfd45fbc7d783c93ccf384cdb89889c36fd 100644 --- a/easybuild/easyconfigs/p/Pangomm/Pangomm-2.36.0-intel-2015b.eb +++ b/easybuild/easyconfigs/p/Pangomm/Pangomm-2.36.0-intel-2015b.eb @@ -19,8 +19,8 @@ dependencies = [ sanity_check_paths = { - 'files': ['lib/libpangomm-1.4.so'], + 'files': ['lib/libpangomm-1.4.%s' % SHLIB_EXT], 'dirs': [], -} +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/ParFlow/ParFlow-605-goolf-1.4.10.eb b/easybuild/easyconfigs/p/ParFlow/ParFlow-605-goolf-1.4.10.eb index 692186178b9bbd36123f1e049d102669f6807e67..52f17ce9e89dfc3abeaf3afb9934db2ffa6f44d1 100644 --- a/easybuild/easyconfigs/p/ParFlow/ParFlow-605-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/ParFlow/ParFlow-605-goolf-1.4.10.eb @@ -24,8 +24,8 @@ preconfigopts = [ 'cd pftools &&', ] # copies of preconfigopts are required, not references, hence the [:] -prebuildopts = preconfigopts[:] -preinstallopts = preconfigopts[:] +prebuildopts = preconfigopts[:] +preinstallopts = preconfigopts[:] configopts = [ ' --with-amps=mpi1 --enable-timing --with-clm --with-silo=$EBROOTSILO --with-hypre=$EBROOTHYPRE', diff --git a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.1.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.1.1-goalf-1.1.0-no-OFED.eb index ace5dbc0de86aa945caa9dc85e5186d68c37f9c1..dbaf1f39f5c6d1cb3ec61ddfa1c1e0b4aa53c122 100644 --- a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.1.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.1.1-goalf-1.1.0-no-OFED.eb @@ -11,8 +11,10 @@ description = """ParMETIS is an MPI-based parallel library that implements a var toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', - 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD'] +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD', +] sources = ['ParMetis-%s.tar.gz' % version] builddependencies = [('CMake', '2.8.4')] diff --git a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.1.1-goolf-1.4.10.eb index 1f858cb94c5efdbab118c22c1a1ae0e862a5c0d6..8183de649dd941578a47cde56f936c4b6ef6644f 100644 --- a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.1.1-goolf-1.4.10.eb @@ -11,8 +11,10 @@ description = """ParMETIS is an MPI-based parallel library that implements a var toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', - 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD'] +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD', +] sources = ['ParMetis-%s.tar.gz' % version] builddependencies = [('CMake', '2.8.4')] diff --git a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.1.1-ictce-4.0.6.eb b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.1.1-ictce-4.0.6.eb index 8cf9a16e39f4095a17084bc858e3ff21b0d8ad2a..d03b34a63fec7260bad35d6645973c4bf0ac7473 100644 --- a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.1.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.1.1-ictce-4.0.6.eb @@ -11,8 +11,10 @@ description = """ParMETIS is an MPI-based parallel library that implements a var toolchain = {'name': 'ictce', 'version': '4.0.6'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', - 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD'] +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD', +] sources = ['ParMetis-%s.tar.gz' % version] builddependencies = [('CMake', '2.8.4')] diff --git a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.1.1-ictce-5.3.0.eb index a0f67cdf0d264a60649c4bfe4864fe49a4582088..11db9fe0382c98cb7af56913e33f5eb598932354 100644 --- a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-3.1.1-ictce-5.3.0.eb @@ -12,8 +12,10 @@ description = """ParMETIS is an MPI-based parallel library that implements a var toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', - 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD'] +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD', +] sources = ['ParMetis-%s.tar.gz' % version] builddependencies = [('CMake', '2.8.4')] diff --git a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-gmpolf-1.4.8.eb b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-gmpolf-1.4.8.eb index a0d6b8d1ed5f10aea0bcb561e82b909375973962..529f9810e3e6998a6fc115fccb69a56157cf03a3 100644 --- a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-gmpolf-1.4.8.eb @@ -11,8 +11,10 @@ description = """ParMETIS is an MPI-based parallel library that implements a var toolchain = {'name': 'gmpolf', 'version': '1.4.8'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', - 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD'] +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD', +] sources = [SOURCELOWER_TAR_GZ] builddependencies = [('CMake', '2.8.4')] diff --git a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-goalf-1.1.0-no-OFED.eb index 7f8da3fb1c401a69c7c4e6439ef4a7af8db1c73e..48d813595b90b32bd3566332958be0a05b3856c6 100644 --- a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-goalf-1.1.0-no-OFED.eb @@ -11,8 +11,10 @@ description = """ParMETIS is an MPI-based parallel library that implements a var toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', - 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD'] +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD', +] sources = [SOURCELOWER_TAR_GZ] builddependencies = [('CMake', '2.8.4')] diff --git a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-goolf-1.4.10.eb index ad06991953371eda222ad276012a57acf5dd4ffe..f4413be29459828872231c11cff8a53292b0508e 100644 --- a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-goolf-1.4.10.eb @@ -11,8 +11,10 @@ description = """ParMETIS is an MPI-based parallel library that implements a var toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', - 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD'] +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD', +] sources = [SOURCELOWER_TAR_GZ] builddependencies = [('CMake', '2.8.4')] diff --git a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-ictce-4.0.6.eb b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-ictce-4.0.6.eb index ef702ef013cee3d9998df7f76c7f60c6d83236c1..10dc4381499c3ff2870ab9832779f2e896585690 100644 --- a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-ictce-4.0.6.eb @@ -11,8 +11,10 @@ description = """ParMETIS is an MPI-based parallel library that implements a var toolchain = {'name': 'ictce', 'version': '4.0.6'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', - 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD'] +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD', +] sources = [SOURCELOWER_TAR_GZ] builddependencies = [('CMake', '2.8.4')] diff --git a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-ictce-5.3.0.eb index a20f70af08c0f29e0588741f03fdac2dcd8692f5..a32790b7f1ea3548822c3f8367fd5f6359f47abe 100644 --- a/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/ParMETIS/ParMETIS-4.0.2-ictce-5.3.0.eb @@ -12,8 +12,10 @@ description = """ParMETIS is an MPI-based parallel library that implements a var toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'usempi': True, 'pic': True} -source_urls = ['http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', - 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD'] +source_urls = [ + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis', + 'http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD', +] sources = [SOURCELOWER_TAR_GZ] builddependencies = [('CMake', '2.8.4')] diff --git a/easybuild/easyconfigs/p/ParaView/ParaView-4.0.1-gmpolf-1.4.8.eb b/easybuild/easyconfigs/p/ParaView/ParaView-4.0.1-gmpolf-1.4.8.eb index bf58fb84fb56848544e3a9f9d4491c9dcc6b757d..c06c552596077c11dc608d6124b3566ced3e63bd 100644 --- a/easybuild/easyconfigs/p/ParaView/ParaView-4.0.1-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/p/ParaView/ParaView-4.0.1-gmpolf-1.4.8.eb @@ -13,7 +13,7 @@ download_suffix = 'download.php?submit=Download&version=v%(version_major_minor)s source_urls = ['http://www.paraview.org/paraview-downloads/%s' % download_suffix] sources = ["ParaView-v%(version)s-source.tgz"] -dependencies = [('Qt','4.8.5')] +dependencies = [('Qt', '4.8.5')] builddependencies = [('CMake', '2.8.10.2')] diff --git a/easybuild/easyconfigs/p/ParaView/ParaView-4.1.0-gmpolf-1.4.8.eb b/easybuild/easyconfigs/p/ParaView/ParaView-4.1.0-gmpolf-1.4.8.eb index bfd42624ef2f3fb3423e73920e4bbbb38f450d0e..63df0fd35a803a696db7e89630cd2f81e793100b 100644 --- a/easybuild/easyconfigs/p/ParaView/ParaView-4.1.0-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/p/ParaView/ParaView-4.1.0-gmpolf-1.4.8.eb @@ -13,7 +13,7 @@ download_suffix = 'download.php?submit=Download&version=v%(version_major_minor)s source_urls = ['http://www.paraview.org/paraview-downloads/%s' % download_suffix] sources = ["ParaView-v%(version)s-source.tar.gz"] -dependencies = [('Qt','4.8.5')] +dependencies = [('Qt', '4.8.5')] builddependencies = [('CMake', '2.8.10.2')] diff --git a/easybuild/easyconfigs/p/ParaView/ParaView-4.1.0-goolf-1.5.14.eb b/easybuild/easyconfigs/p/ParaView/ParaView-4.1.0-goolf-1.5.14.eb index 0e83d17a57b07ebe558ed952351030ffd36feb7d..54eca56e62ab0df577cfa5f0d9dc548ee3d662cf 100644 --- a/easybuild/easyconfigs/p/ParaView/ParaView-4.1.0-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/ParaView/ParaView-4.1.0-goolf-1.5.14.eb @@ -13,7 +13,7 @@ download_suffix = 'download.php?submit=Download&version=v%(version_major_minor)s source_urls = ['http://www.paraview.org/paraview-downloads/%s' % download_suffix] sources = ["ParaView-v%(version)s-source.tar.gz"] -dependencies = [('Qt','4.8.5')] +dependencies = [('Qt', '4.8.5')] builddependencies = [('CMake', '2.8.10.2')] diff --git a/easybuild/easyconfigs/p/ParaView/ParaView-4.1.0-intel-2014b.eb b/easybuild/easyconfigs/p/ParaView/ParaView-4.1.0-intel-2014b.eb index 04255cc7c7446457c2cec36d7dcf05db748643ab..61e00cb01ab7a5f4cd7f3aadeb555465a1cd3959 100644 --- a/easybuild/easyconfigs/p/ParaView/ParaView-4.1.0-intel-2014b.eb +++ b/easybuild/easyconfigs/p/ParaView/ParaView-4.1.0-intel-2014b.eb @@ -13,7 +13,7 @@ download_suffix = 'download.php?submit=Download&version=v%(version_major_minor)s source_urls = ['http://www.paraview.org/paraview-downloads/%s' % download_suffix] sources = ["ParaView-v%(version)s-source.tar.gz"] -dependencies = [('Qt','4.8.6')] +dependencies = [('Qt', '4.8.6')] builddependencies = [('CMake', '3.0.0')] diff --git a/easybuild/easyconfigs/p/ParaView/ParaView-4.3.1-intel-2015a-Python-2.7.10-mpi.eb b/easybuild/easyconfigs/p/ParaView/ParaView-4.3.1-intel-2015a-Python-2.7.10-mpi.eb index 003394e4e200f90176bdbd8f28962b3939727d40..c8116fe14fdfacd208bd296115352a67c13d9fa8 100644 --- a/easybuild/easyconfigs/p/ParaView/ParaView-4.3.1-intel-2015a-Python-2.7.10-mpi.eb +++ b/easybuild/easyconfigs/p/ParaView/ParaView-4.3.1-intel-2015a-Python-2.7.10-mpi.eb @@ -33,20 +33,20 @@ builddependencies = [('CMake', '3.2.2')] separate_build_dir = True -maxparallel = 4 +maxparallel = 4 configopts = '-DPARAVIEW_INSTALL_DEVELOPMENT_FILES=ON -DVTK_OPENGL_HAS_OSMESA=ON -DPARAVIEW_USE_MPI=ON ' configopts += '-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include -DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.so ' configopts += '-DOSMESA_INCLUDE_DIR=$EBROOTMESA/include -DOSMESA_LIBRARY=$EBROOTMESA/lib/libOSMesa.so ' -#Without internet connection turn off testing (uncomment the following line) +# Without internet connection turn off testing (uncomment the following line) #configopts += '-DBUILD_TESTING=OFF ' -#Or consult https://gitlab.kitware.com/vtk/vtk/blob/master/Documentation/dev/git/data.md -#and download ExternalData to $EASYBUILD_SOURCEPATH and adjust -DExternalData_OBJECT_STORES accordingly -#Without internet connection, comment the following two lines (configopts and prebuildopts) +# Or consult https://gitlab.kitware.com/vtk/vtk/blob/master/Documentation/dev/git/data.md +# and download ExternalData to $EASYBUILD_SOURCEPATH and adjust -DExternalData_OBJECT_STORES accordingly +# Without internet connection, comment the following two lines (configopts and prebuildopts) configopts += '-DExternalData_OBJECT_STORES=%(builddir)s/ExternalData ' -#The ParaView server can be cranky, test downloads are quite often failing, especially in the case -#of parallel downloads. Using ; insted of && gives a second chance to download the test files, if the -#first serial attempt would fail. +# The ParaView server can be cranky, test downloads are quite often failing, especially in the case +# of parallel downloads. Using ; insted of && gives a second chance to download the test files, if the +# first serial attempt would fail. prebuildopts = 'make VTKData ;' moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/ParaView/ParaView-4.3.1-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/p/ParaView/ParaView-4.3.1-intel-2015a-Python-2.7.10.eb index db9915173850632740fa8b1100eb08a0e45f08db..2e184fd8019defe06ed7f5a084d06a9a56dab2ea 100644 --- a/easybuild/easyconfigs/p/ParaView/ParaView-4.3.1-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/p/ParaView/ParaView-4.3.1-intel-2015a-Python-2.7.10.eb @@ -32,20 +32,20 @@ builddependencies = [('CMake', '3.2.2')] separate_build_dir = True -maxparallel = 4 +maxparallel = 4 configopts = '-DPARAVIEW_INSTALL_DEVELOPMENT_FILES=ON -DVTK_OPENGL_HAS_OSMESA=ON ' configopts += '-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include -DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.so ' configopts += '-DOSMESA_INCLUDE_DIR=$EBROOTMESA/include -DOSMESA_LIBRARY=$EBROOTMESA/lib/libOSMesa.so ' -#Without internet connection turn off testing (uncomment the following line) +# Without internet connection turn off testing (uncomment the following line) #configopts += '-DBUILD_TESTING=OFF ' -#Or consult https://gitlab.kitware.com/vtk/vtk/blob/master/Documentation/dev/git/data.md -#and download ExternalData to $EASYBUILD_SOURCEPATH and adjust -DExternalData_OBJECT_STORES accordingly -#Without internet connection, comment the following two lines (configopts and prebuildopts) +# Or consult https://gitlab.kitware.com/vtk/vtk/blob/master/Documentation/dev/git/data.md +# and download ExternalData to $EASYBUILD_SOURCEPATH and adjust -DExternalData_OBJECT_STORES accordingly +# Without internet connection, comment the following two lines (configopts and prebuildopts) configopts += '-DExternalData_OBJECT_STORES=%(builddir)s/ExternalData ' -#The ParaView server can be cranky, test downloads are quite often failing, especially in the case -#of parallel downloads. Using ; insted of && gives a second chance to download the test files, if the -#first serial attempt would fail. +# The ParaView server can be cranky, test downloads are quite often failing, especially in the case +# of parallel downloads. Using ; insted of && gives a second chance to download the test files, if the +# first serial attempt would fail. prebuildopts = 'make VTKData ;' moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/ParaView/ParaView-4.4.0-intel-2015b-mpi.eb b/easybuild/easyconfigs/p/ParaView/ParaView-4.4.0-intel-2015b-mpi.eb index fb6b899d907d188c0c3f7b07caf9fd18fcfa4dec..2e7bc45270cfcd09fac2f78b3a774424376d2554 100644 --- a/easybuild/easyconfigs/p/ParaView/ParaView-4.4.0-intel-2015b-mpi.eb +++ b/easybuild/easyconfigs/p/ParaView/ParaView-4.4.0-intel-2015b-mpi.eb @@ -18,7 +18,7 @@ patches = ['%(name)s-%(version)s_missingheader.patch'] python = 'Python' pyver = '2.7.10' -pysuff = '-%s-%s' % (python,pyver) +pysuff = '-%s-%s' % (python, pyver) dependencies = [ ('Mesa', '11.0.2', pysuff), ('libGLU', '9.0.0'), @@ -33,20 +33,20 @@ builddependencies = [('CMake', '3.3.2')] separate_build_dir = True -maxparallel = 4 +maxparallel = 4 configopts = '-DPARAVIEW_INSTALL_DEVELOPMENT_FILES=ON -DVTK_OPENGL_HAS_OSMESA=ON -DPARAVIEW_USE_MPI=ON ' configopts += '-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include -DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.so ' configopts += '-DOSMESA_INCLUDE_DIR=$EBROOTMESA/include -DOSMESA_LIBRARY=$EBROOTMESA/lib/libOSMesa.so ' -#Without internet connection turn off testing (uncomment the following line) +# Without internet connection turn off testing (uncomment the following line) #configopts += '-DBUILD_TESTING=OFF ' -#Or consult https://gitlab.kitware.com/vtk/vtk/blob/master/Documentation/dev/git/data.md -#and download ExternalData to $EASYBUILD_SOURCEPATH and adjust -DExternalData_OBJECT_STORES accordingly -#Without internet connection, comment the following two lines (configopts and prebuildopts) +# Or consult https://gitlab.kitware.com/vtk/vtk/blob/master/Documentation/dev/git/data.md +# and download ExternalData to $EASYBUILD_SOURCEPATH and adjust -DExternalData_OBJECT_STORES accordingly +# Without internet connection, comment the following two lines (configopts and prebuildopts) configopts += '-DExternalData_OBJECT_STORES=%(builddir)s/ExternalData ' -#The ParaView server can be cranky, test downloads are quite often failing, especially in the case -#of parallel downloads. Using ; insted of && gives a second chance to download the test files, if the -#first serial attempt would fail. +# The ParaView server can be cranky, test downloads are quite often failing, especially in the case +# of parallel downloads. Using ; insted of && gives a second chance to download the test files, if the +# first serial attempt would fail. prebuildopts = 'make VTKData ;' moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/ParaView/ParaView-4.4.0-intel-2015b.eb b/easybuild/easyconfigs/p/ParaView/ParaView-4.4.0-intel-2015b.eb index 00106458b88b4bab758c9fa082669ad89aa10d50..0057213bea9baabbefe8efc4c88490e2718989d4 100644 --- a/easybuild/easyconfigs/p/ParaView/ParaView-4.4.0-intel-2015b.eb +++ b/easybuild/easyconfigs/p/ParaView/ParaView-4.4.0-intel-2015b.eb @@ -17,7 +17,7 @@ patches = ['%(name)s-%(version)s_missingheader.patch'] python = 'Python' pyver = '2.7.10' -pysuff = '-%s-%s' % (python,pyver) +pysuff = '-%s-%s' % (python, pyver) dependencies = [ ('Mesa', '11.0.2', pysuff), ('libGLU', '9.0.0'), @@ -32,20 +32,20 @@ builddependencies = [('CMake', '3.3.2')] separate_build_dir = True -maxparallel = 4 +maxparallel = 4 configopts = '-DPARAVIEW_INSTALL_DEVELOPMENT_FILES=ON -DVTK_OPENGL_HAS_OSMESA=ON ' configopts += '-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include -DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.so ' configopts += '-DOSMESA_INCLUDE_DIR=$EBROOTMESA/include -DOSMESA_LIBRARY=$EBROOTMESA/lib/libOSMesa.so ' -#Without internet connection turn off testing (uncomment the following line) +# Without internet connection turn off testing (uncomment the following line) #configopts += '-DBUILD_TESTING=OFF ' -#Or consult https://gitlab.kitware.com/vtk/vtk/blob/master/Documentation/dev/git/data.md -#and download ExternalData to $EASYBUILD_SOURCEPATH and adjust -DExternalData_OBJECT_STORES accordingly -#Without internet connection, comment the following two lines (configopts and prebuildopts) +# Or consult https://gitlab.kitware.com/vtk/vtk/blob/master/Documentation/dev/git/data.md +# and download ExternalData to $EASYBUILD_SOURCEPATH and adjust -DExternalData_OBJECT_STORES accordingly +# Without internet connection, comment the following two lines (configopts and prebuildopts) configopts += '-DExternalData_OBJECT_STORES=%(builddir)s/ExternalData ' -#The ParaView server can be cranky, test downloads are quite often failing, especially in the case -#of parallel downloads. Using ; insted of && gives a second chance to download the test files, if the -#first serial attempt would fail. +# The ParaView server can be cranky, test downloads are quite often failing, especially in the case +# of parallel downloads. Using ; insted of && gives a second chance to download the test files, if the +# first serial attempt would fail. prebuildopts = 'make VTKData ;' moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/Pasha/Pasha-1.0.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/Pasha/Pasha-1.0.3-goalf-1.1.0-no-OFED.eb index 3b392c874bf9907121b0242ca3918a79173164b5..1450202b6878f1f5d02e23d86b9b8d99219b3746 100644 --- a/easybuild/easyconfigs/p/Pasha/Pasha-1.0.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/Pasha/Pasha-1.0.3-goalf-1.1.0-no-OFED.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] patches = ['old-libstdc++-hash_fun-map-set.patch'] -# Pasha's makefile is not suited for parallel execution +# Pasha's makefile is not suited for parallel execution parallel = 1 moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/Pasha/Pasha-1.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Pasha/Pasha-1.0.3-goolf-1.4.10.eb index e06bb5adee207cf72591eb0d8c7e2b2dd32e5c89..9948217fd4ea62e9fef2c2a1e0a1fac4bb272831 100644 --- a/easybuild/easyconfigs/p/Pasha/Pasha-1.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Pasha/Pasha-1.0.3-goolf-1.4.10.eb @@ -17,7 +17,7 @@ patches = [ 'Pasha_GCC-4.7.patch', ] -# Pasha's makefile is not suited for parallel execution +# Pasha's makefile is not suited for parallel execution parallel = 1 moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/Pasha/Pasha-1.0.3-ictce-4.0.6.eb b/easybuild/easyconfigs/p/Pasha/Pasha-1.0.3-ictce-4.0.6.eb index c9750749305ea11c682ed91a0dd44f7dfb9dd7a0..61f6c03bfb0fafa9a17c7de5be00ef6005389d07 100644 --- a/easybuild/easyconfigs/p/Pasha/Pasha-1.0.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/Pasha/Pasha-1.0.3-ictce-4.0.6.eb @@ -13,12 +13,12 @@ source_urls = ['http://downloads.sourceforge.net/pasha'] sources = [SOURCE_TAR_GZ] patches = [ - 'intelmpi.patch', - # needed since this still relies on gnu specific includes from libstdc++ which changed in latest version - 'old-libstdc++-hash_fun-map-set.patch', - ] + 'intelmpi.patch', + # needed since this still relies on gnu specific includes from libstdc++ which changed in latest version + 'old-libstdc++-hash_fun-map-set.patch', +] -# Pasha's makefile is not suited for parallel execution +# Pasha's makefile is not suited for parallel execution parallel = 1 moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/Pasha/Pasha-1.0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Pasha/Pasha-1.0.3-ictce-5.3.0.eb index 3ca4f9bfba8e6e5667cda96e66c868216a1ee4fd..4043dd5630c1f2c71a2427d4a0fc6f3a467c045e 100644 --- a/easybuild/easyconfigs/p/Pasha/Pasha-1.0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Pasha/Pasha-1.0.3-ictce-5.3.0.eb @@ -14,12 +14,12 @@ source_urls = ['http://downloads.sourceforge.net/pasha'] sources = [SOURCE_TAR_GZ] patches = [ - 'intelmpi.patch', - # needed since this still relies on gnu specific includes from libstdc++ which changed in latest version - 'old-libstdc++-hash_fun-map-set.patch', - ] + 'intelmpi.patch', + # needed since this still relies on gnu specific includes from libstdc++ which changed in latest version + 'old-libstdc++-hash_fun-map-set.patch', +] -# Pasha's makefile is not suited for parallel execution +# Pasha's makefile is not suited for parallel execution parallel = 1 moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/Pasha/Pasha-1.0.5-ictce-4.0.6.eb b/easybuild/easyconfigs/p/Pasha/Pasha-1.0.5-ictce-4.0.6.eb index bbafb52a0c2f51adc10b863e7575bf26a28f31c6..1d85521e587ebbeb36524ac4d244ea89e45b9b1c 100644 --- a/easybuild/easyconfigs/p/Pasha/Pasha-1.0.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/Pasha/Pasha-1.0.5-ictce-4.0.6.eb @@ -13,14 +13,14 @@ source_urls = ['http://downloads.sourceforge.net/pasha'] sources = [SOURCE_TAR_GZ] patches = [ - 'intelmpi.patch', - # needed since this still relies on gnu specific includes from libstdc++ which changed in latest version of libstdc++ - # since 1.0.5 pasha tries to use 'backward/' instead of 'ext/' but this might fail on some systems. - 'old-libstdc++-hash_fun-map-set_pasha-1.0.5.patch', + 'intelmpi.patch', + # needed since this still relies on gnu specific includes from libstdc++ which changed in latest version of libstdc++ + # since 1.0.5 pasha tries to use 'backward/' instead of 'ext/' but this might fail on some systems. + 'old-libstdc++-hash_fun-map-set_pasha-1.0.5.patch', - ] +] -# Pasha's makefile is not suited for parallel execution +# Pasha's makefile is not suited for parallel execution parallel = 1 moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/Pasha/Pasha-1.0.5-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Pasha/Pasha-1.0.5-ictce-5.3.0.eb index d956840f69ec653e46c322c05f47f710a9171bae..a72485e97d248bcb6bbc468027a1e65778ad9a29 100644 --- a/easybuild/easyconfigs/p/Pasha/Pasha-1.0.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Pasha/Pasha-1.0.5-ictce-5.3.0.eb @@ -14,14 +14,14 @@ source_urls = ['http://downloads.sourceforge.net/pasha'] sources = [SOURCE_TAR_GZ] patches = [ - 'intelmpi.patch', - # needed since this still relies on gnu specific includes from libstdc++ which changed in latest version of libstdc++ - # since 1.0.5 pasha tries to use 'backward/' instead of 'ext/' but this might fail on some systems. - 'old-libstdc++-hash_fun-map-set_pasha-1.0.5.patch', + 'intelmpi.patch', + # needed since this still relies on gnu specific includes from libstdc++ which changed in latest version of libstdc++ + # since 1.0.5 pasha tries to use 'backward/' instead of 'ext/' but this might fail on some systems. + 'old-libstdc++-hash_fun-map-set_pasha-1.0.5.patch', - ] +] -# Pasha's makefile is not suited for parallel execution +# Pasha's makefile is not suited for parallel execution parallel = 1 moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/PeakSeq/PeakSeq-1.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/PeakSeq/PeakSeq-1.3-goolf-1.4.10.eb index 0a7acf4ed3d0cf069e0cea33394e1c39e2537bfc..beddc1be80d02da0ed4f61c26fd683ebf7078c37 100644 --- a/easybuild/easyconfigs/p/PeakSeq/PeakSeq-1.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/PeakSeq/PeakSeq-1.3-goolf-1.4.10.eb @@ -24,7 +24,7 @@ checksums = [('md5', '32b4d71b2ec9455c7db69516b1bd4910')] buildopts = ' CC="$CXX"' -files_to_copy = ["bin", "README" ] +files_to_copy = ["bin", "README"] sanity_check_paths = { 'files': ["bin/PeakSeq"], diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.18.2-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Perl/Perl-5.18.2-ictce-5.5.0.eb index 03576a1d0c768b58ff7482177df9a3c4f64e0676..5e44fd7e987cbe66f1e564ef1ea0d5784ecf9b30 100644 --- a/easybuild/easyconfigs/p/Perl/Perl-5.18.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Perl/Perl-5.18.2-ictce-5.5.0.eb @@ -210,7 +210,7 @@ exts_list = [ 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], }), ('Moose', '2.1204', { - 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/ET/ETHER/'], }), ('Params::Validate', '1.08', { 'source_tmpl': 'Params-Validate-1.08.tar.gz', diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.3-foss-2015b.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.3-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..35f20adfa32ee284cfe7770dc51d53ec4a559765 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.3-foss-2015b.eb @@ -0,0 +1,909 @@ +name = 'Perl' +version = '5.20.3' + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +exts_list = [ + ('Config::General', '2.58', { + 'source_tmpl': 'Config-General-2.58.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + }), + ('File::Listing', '6.04', { + 'source_tmpl': 'File-Listing-6.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('ExtUtils::InstallPaths', '0.011', { + 'source_tmpl': 'ExtUtils-InstallPaths-0.011.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::Helpers', '0.022', { + 'source_tmpl': 'ExtUtils-Helpers-0.022.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('TAP::Harness::Env', '3.35', { + 'source_tmpl': 'Test-Harness-3.35.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::Config', '0.008', { + 'source_tmpl': 'ExtUtils-Config-0.008.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Module::Build::Tiny', '0.039', { + 'source_tmpl': 'Module-Build-Tiny-0.039.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('aliased', '0.34', { + 'source_tmpl': 'aliased-0.34.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Text::Glob', '0.09', { + 'source_tmpl': 'Text-Glob-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + }), + ('Regexp::Common', '2013031301', { + 'source_tmpl': 'Regexp-Common-2013031301.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], + }), + ('GO::Utils', '0.15', { + 'source_tmpl': 'go-perl-0.15.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + }), + ('Module::Pluggable', '5.2', { + 'source_tmpl': 'Module-Pluggable-5.2.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SI/SIMONW'], + }), + ('Test::Fatal', '0.014', { + 'source_tmpl': 'Test-Fatal-0.014.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Test::Warnings', '0.021', { + 'source_tmpl': 'Test-Warnings-0.021.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('DateTime::Locale', '0.46', { + 'source_tmpl': 'DateTime-Locale-0.46.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('DateTime::TimeZone', '1.93', { + 'source_tmpl': 'DateTime-TimeZone-1.93.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Test::Requires', '0.10', { + 'source_tmpl': 'Test-Requires-0.10.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM'], + }), + ('Module::Implementation', '0.09', { + 'source_tmpl': 'Module-Implementation-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Module::Runtime', '0.014', { + 'source_tmpl': 'Module-Runtime-0.014.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM'], + }), + ('Try::Tiny', '0.22', { + 'source_tmpl': 'Try-Tiny-0.22.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('Params::Validate', '1.21', { + 'source_tmpl': 'Params-Validate-1.21.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('List::MoreUtils', '0.413', { + 'source_tmpl': 'List-MoreUtils-0.413.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('Exporter::Tiny', '0.042', { + 'source_tmpl': 'Exporter-Tiny-0.042.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/T/TO/TOBYINK'], + }), + ('Class::Singleton', '1.5', { + 'source_tmpl': 'Class-Singleton-1.5.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + }), + ('DateTime', '1.20', { + 'source_tmpl': 'DateTime-1.20.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('File::Find::Rule::Perl', '1.15', { + 'source_tmpl': 'File-Find-Rule-Perl-1.15.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Module::Build', '0.4214', { + 'source_tmpl': 'Module-Build-0.4214.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Readonly', '2.00', { + 'source_tmpl': 'Readonly-2.00.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SA/SANKO'], + }), + ('Git', '0.41', { + 'source_tmpl': 'Git-0.41.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSOUTH'], + }), + ('Tree::DAG_Node', '1.27', { + 'source_tmpl': 'Tree-DAG_Node-1.27.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('Template', '2.26', { + 'source_tmpl': 'Template-Toolkit-2.26.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW'], + }), + ('FreezeThaw', '0.5001', { + 'source_tmpl': 'FreezeThaw-0.5001.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IL/ILYAZ/modules'], + }), + ('DBI', '1.634', { + 'source_tmpl': 'DBI-1.634.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TI/TIMB'], + }), + ('DBD::SQLite', '1.48', { + 'source_tmpl': 'DBD-SQLite-1.48.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + }), + ('Math::Bezier', '0.01', { + 'source_tmpl': 'Math-Bezier-0.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW'], + }), + ('Archive::Extract', '0.76', { + 'source_tmpl': 'Archive-Extract-0.76.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('DBIx::Simple', '1.35', { + 'source_tmpl': 'DBIx-Simple-1.35.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JU/JUERD'], + }), + ('Shell', '0.72', { + 'source_tmpl': 'Shell-0.72.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FE/FERREIRA'], + }), + ('File::Spec', '3.47', { + 'source_tmpl': 'PathTools-3.47.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SM/SMUELLER'], + }), + ('ExtUtils::MakeMaker', '7.10', { + 'source_tmpl': 'ExtUtils-MakeMaker-7.10.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Test::Simple', '1.001014', { + 'source_tmpl': 'Test-Simple-1.001014.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Set::Scalar', '1.29', { + 'source_tmpl': 'Set-Scalar-1.29.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAVIDO'], + }), + ('IO::WrapTie', '2.111', { + 'source_tmpl': 'IO-stringy-2.111.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + }), + ('Encode::Locale', '1.05', { + 'source_tmpl': 'Encode-Locale-1.05.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('XML::SAX::Base', '1.08', { + 'source_tmpl': 'XML-SAX-Base-1.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + }), + ('XML::NamespaceSupport', '1.11', { + 'source_tmpl': 'XML-NamespaceSupport-1.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], + }), + ('XML::SAX', '0.99', { + 'source_tmpl': 'XML-SAX-0.99.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + }), + ('Test::LeakTrace', '0.15', { + 'source_tmpl': 'Test-LeakTrace-0.15.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GF/GFUJI'], + }), + ('Test::Exception', '0.40', { + 'source_tmpl': 'Test-Exception-0.40.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Text::Table', '1.130', { + 'source_tmpl': 'Text-Table-1.130.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('MIME::Types', '2.11', { + 'source_tmpl': 'MIME-Types-2.11.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + }), + ('Module::Build::XSUtil', '0.16', { + 'source_tmpl': 'Module-Build-XSUtil-0.16.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HI/HIDEAKIO'], + }), + ('Tie::Function', '0.02', { + 'source_tmpl': 'Tie-Function-0.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAVIDNICO/handy_tied_functions'], + }), + ('Template::Plugin::Number::Format', '1.06', { + 'source_tmpl': 'Template-Plugin-Number-Format-1.06.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DARREN'], + }), + ('HTML::Parser', '3.71', { + 'source_tmpl': 'HTML-Parser-3.71.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Date::Handler', '1.2', { + 'source_tmpl': 'Date-Handler-1.2.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BB/BBEAUSEJ'], + }), + ('Params::Util', '1.07', { + 'source_tmpl': 'Params-Util-1.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('IO::HTML', '1.001', { + 'source_tmpl': 'IO-HTML-1.001.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM'], + }), + ('Data::Grove', '0.08', { + 'source_tmpl': 'libxml-perl-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KM/KMACLEOD'], + }), + ('Class::ISA', '0.36', { + 'source_tmpl': 'Class-ISA-0.36.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SM/SMUELLER'], + }), + ('URI', '1.69', { + 'source_tmpl': 'URI-1.69.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Ima::DBI', '0.35', { + 'source_tmpl': 'Ima-DBI-0.35.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERRIN'], + }), + ('Tie::IxHash', '1.23', { + 'source_tmpl': 'Tie-IxHash-1.23.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + }), + ('GO', '0.04', { + 'source_tmpl': 'go-db-perl-0.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SJ/SJCARBON'], + }), + ('Class::DBI::SQLite', '0.11', { + 'source_tmpl': 'Class-DBI-SQLite-0.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + }), + ('Pod::POM', '2.00', { + 'source_tmpl': 'Pod-POM-2.00.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + }), + ('Math::Round', '0.07', { + 'source_tmpl': 'Math-Round-0.07.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GROMMEL'], + }), + ('Text::Diff', '1.43', { + 'source_tmpl': 'Text-Diff-1.43.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + }), + ('Log::Message::Simple', '0.10', { + 'source_tmpl': 'Log-Message-Simple-0.10.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('IO::Socket::SSL', '2.020', { + 'source_tmpl': 'IO-Socket-SSL-2.020.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SU/SULLR'], + }), + ('Fennec::Lite', '0.004', { + 'source_tmpl': 'Fennec-Lite-0.004.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Sub::Uplevel', '0.25', { + 'source_tmpl': 'Sub-Uplevel-0.25.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/D/DA/DAGOLDEN/'], + }), + ('Meta::Builder', '0.003', { + 'source_tmpl': 'Meta-Builder-0.003.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Exporter::Declare', '0.114', { + 'source_tmpl': 'Exporter-Declare-0.114.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('IO::Stringy', '2.111', { + 'source_tmpl': 'IO-stringy-2.111.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + }), + ('Getopt::Long', '2.47', { + 'source_tmpl': 'Getopt-Long-2.47.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JV/JV'], + }), + ('Log::Message', '0.08', { + 'source_tmpl': 'Log-Message-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Mouse', 'v2.4.5', { + 'source_tmpl': 'Mouse-v2.4.5.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + }), + ('Test::Version', '2.03', { + 'source_tmpl': 'Test-Version-2.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + }), + ('DBIx::Admin::TableInfo', '3.01', { + 'source_tmpl': 'DBIx-Admin-TableInfo-3.01.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('Net::HTTP', '6.09', { + 'source_tmpl': 'Net-HTTP-6.09.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Test::Deep', '0.117', { + 'source_tmpl': 'Test-Deep-0.117.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Test::Warn', '0.30', { + 'source_tmpl': 'Test-Warn-0.30.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + }), + ('MRO::Compat', '0.12', { + 'source_tmpl': 'MRO-Compat-0.12.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BO/BOBTFISH'], + }), + ('Moo', '2.000002', { + 'source_tmpl': 'Moo-2.000002.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('Hash::Merge', '0.200', { + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/R/RE/REHSACK/'], + 'source_tmpl': 'Hash-Merge-0.200.tar.gz', + }), + ('SQL::Abstract', '1.81', { + 'source_tmpl': 'SQL-Abstract-1.81.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RI/RIBASUSHI'], + }), + ('HTML::Form', '6.03', { + 'source_tmpl': 'HTML-Form-6.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('File::Copy::Recursive', '0.38', { + 'source_tmpl': 'File-Copy-Recursive-0.38.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DM/DMUEY'], + }), + ('Number::Compare', '0.03', { + 'source_tmpl': 'Number-Compare-0.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + }), + ('IPC::Run', '0.94', { + 'source_tmpl': 'IPC-Run-0.94.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('HTML::Entities::Interpolate', '1.05', { + 'source_tmpl': 'HTML-Entities-Interpolate-1.05.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('Test::ClassAPI', '1.06', { + 'source_tmpl': 'Test-ClassAPI-1.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Test::Most', '0.34', { + 'source_tmpl': 'Test-Most-0.34.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID'], + }), + ('Class::Accessor', '0.34', { + 'source_tmpl': 'Class-Accessor-0.34.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KASEI'], + }), + ('Test::Differences', '0.63', { + 'source_tmpl': 'Test-Differences-0.63.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DC/DCANTRELL'], + }), + ('HTTP::Tiny', '0.056', { + 'source_tmpl': 'HTTP-Tiny-0.056.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + ('Package::DeprecationManager', '0.14', { + 'source_tmpl': 'Package-DeprecationManager-0.14.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Digest::SHA1', '2.13', { + 'source_tmpl': 'Digest-SHA1-2.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Date::Language', '2.30', { + 'source_tmpl': 'TimeDate-2.30.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GB/GBARR'], + }), + ('version', '0.9912', { + 'source_tmpl': 'version-0.9912.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JP/JPEACOCK'], + }), + ('Sub::Uplevel', '0.25', { + 'source_tmpl': 'Sub-Uplevel-0.25.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + # fails: uses 'gcc' + #('XML::Bare', '0.53', { + # 'source_tmpl': 'XML-Bare-0.53.tar.gz', + # 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CO/CODECHILD'], + #}), + ('Dist::CheckConflicts', '0.11', { + 'source_tmpl': 'Dist-CheckConflicts-0.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('Sub::Name', '0.14', { + 'source_tmpl': 'Sub-Name-0.14.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Time::Piece', '1.30', { + 'source_tmpl': 'Time-Piece-1.30.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Digest::HMAC', '1.03', { + 'source_tmpl': 'Digest-HMAC-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('HTTP::Negotiate', '6.01', { + 'source_tmpl': 'HTTP-Negotiate-6.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('MIME::Lite', '3.030', { + 'source_tmpl': 'MIME-Lite-3.030.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Crypt::Rijndael', '1.13', { + 'source_tmpl': 'Crypt-Rijndael-1.13.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('B::Lint', '1.20', { + 'source_tmpl': 'B-Lint-1.20.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Canary::Stability', '2006', { + 'source_tmpl': 'Canary-Stability-2006.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN'], + }), + ('AnyEvent', '7.11', { + 'source_tmpl': 'AnyEvent-7.11.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN'], + }), + ('Object::Accessor', '0.48', { + 'source_tmpl': 'Object-Accessor-0.48.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Data::UUID', '1.221', { + 'source_tmpl': 'Data-UUID-1.221.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Test::Pod', '1.51', { + 'source_tmpl': 'Test-Pod-1.51.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('AppConfig', '1.71', { + 'source_tmpl': 'AppConfig-1.71.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + }), + ('Net::SMTP::SSL', '1.03', { + 'source_tmpl': 'Net-SMTP-SSL-1.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('XML::Tiny', '2.06', { + 'source_tmpl': 'XML-Tiny-2.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DC/DCANTRELL'], + }), + ('HTML::Tagset', '3.20', { + 'source_tmpl': 'HTML-Tagset-3.20.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PETDANCE'], + }), + ('HTML::Tree', '5.03', { + 'source_tmpl': 'HTML-Tree-5.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM'], + }), + ('Devel::GlobalDestruction', '0.13', { + 'source_tmpl': 'Devel-GlobalDestruction-0.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('WWW::RobotRules', '6.02', { + 'source_tmpl': 'WWW-RobotRules-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Expect', '1.32', { + 'source_tmpl': 'Expect-1.32.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SZ/SZABGAB'], + }), + ('Term::UI', '0.46', { + 'source_tmpl': 'Term-UI-0.46.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Net::SNMP', 'v6.0.1', { + 'source_tmpl': 'Net-SNMP-v6.0.1.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DT/DTOWN'], + }), + ('XML::SAX::Writer', '0.56', { + 'source_tmpl': 'XML-SAX-Writer-0.56.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], + }), + ('Statistics::Descriptive', '3.0609', { + 'source_tmpl': 'Statistics-Descriptive-3.0609.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('Class::Load', '0.23', { + 'source_tmpl': 'Class-Load-0.23.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('LWP::Simple', '6.13', { + 'source_tmpl': 'libwww-perl-6.13.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Time::Piece::MySQL', '0.06', { + 'source_tmpl': 'Time-Piece-MySQL-0.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KASEI'], + }), + ('Package::Stash::XS', '0.28', { + 'source_tmpl': 'Package-Stash-XS-0.28.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('GD::Graph', '1.49', { + 'source_tmpl': 'GDGraph-1.49.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RU/RUZ'], + }), + ('Set::Array', '0.30', { + 'source_tmpl': 'Set-Array-0.30.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('boolean', '0.45', { + 'source_tmpl': 'boolean-0.45.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IN/INGY'], + }), + ('Number::Format', '1.75', { + 'source_tmpl': 'Number-Format-1.75.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/W/WR/WRW'], + }), + ('Data::Stag', '0.14', { + 'source_tmpl': 'Data-Stag-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + }), + ('Test::Tester', '1.001014', { + 'source_tmpl': 'Test-Simple-1.001014.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Test::NoWarnings', '1.04', { + 'source_tmpl': 'Test-NoWarnings-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Crypt::DES', '2.07', { + 'source_tmpl': 'Crypt-DES-2.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DP/DPARIS'], + }), + ('Exporter', '5.72', { + 'source_tmpl': 'Exporter-5.72.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('Class::Inspector', '1.28', { + 'source_tmpl': 'Class-Inspector-1.28.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Parse::RecDescent', '1.967012', { + 'source_tmpl': 'Parse-RecDescent-1.967012.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JT/JTBRAUN'], + }), + ('Carp', '1.36', { + 'source_tmpl': 'Carp-1.36.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('XML::XPath', '1.13', { + 'source_tmpl': 'XML-XPath-1.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MS/MSERGEANT'], + }), + ('Capture::Tiny', '0.30', { + 'source_tmpl': 'Capture-Tiny-0.30.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + ('JSON', '2.90', { + 'source_tmpl': 'JSON-2.90.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA'], + }), + ('Sub::Exporter', '0.987', { + 'source_tmpl': 'Sub-Exporter-0.987.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Class::Load::XS', '0.09', { + 'source_tmpl': 'Class-Load-XS-0.09.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Set::IntSpan::Fast', '1.15', { + 'source_tmpl': 'Set-IntSpan-Fast-1.15.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AN/ANDYA'], + }), + ('Sub::Exporter::Progressive', '0.001011', { + 'source_tmpl': 'Sub-Exporter-Progressive-0.001011.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW'], + }), + ('LWP', '6.13', { + 'source_tmpl': 'libwww-perl-6.13.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Data::Dumper::Concise', '2.022', { + 'source_tmpl': 'Data-Dumper-Concise-2.022.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW'], + }), + ('File::Slurp::Tiny', '0.004', { + 'source_tmpl': 'File-Slurp-Tiny-0.004.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Algorithm::Diff', '1.1903', { + 'source_tmpl': 'Algorithm-Diff-1.1903.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TY/TYEMQ'], + }), + ('AnyData', '0.12', { + 'source_tmpl': 'AnyData-0.12.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('Text::Iconv', '1.7', { + 'source_tmpl': 'Text-Iconv-1.7.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MP/MPIOTR'], + }), + ('Class::Data::Inheritable', '0.08', { + 'source_tmpl': 'Class-Data-Inheritable-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM'], + }), + ('Text::Balanced', '2.03', { + 'source_tmpl': 'Text-Balanced-2.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + }), + ('strictures', '2.000001', { + 'source_tmpl': 'strictures-2.000001.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('Switch', '2.17', { + 'source_tmpl': 'Switch-2.17.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + }), + ('File::Which', '1.19', { + 'source_tmpl': 'File-Which-1.19.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + }), + ('Email::Date::Format', '1.005', { + 'source_tmpl': 'Email-Date-Format-1.005.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Error', '0.17024', { + 'source_tmpl': 'Error-0.17024.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('Mock::Quick', '1.110', { + 'source_tmpl': 'Mock-Quick-1.110.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Text::CSV', '1.33', { + 'source_tmpl': 'Text-CSV-1.33.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA'], + }), + ('Test::Output', '1.03', { + 'source_tmpl': 'Test-Output-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BD/BDFOY'], + }), + ('Class::DBI', 'v3.0.17', { + 'source_tmpl': 'Class-DBI-v3.0.17.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM'], + }), + ('List::AllUtils', '0.09', { + 'source_tmpl': 'List-AllUtils-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('UNIVERSAL::moniker', '0.08', { + 'source_tmpl': 'UNIVERSAL-moniker-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KASEI'], + }), + ('Exception::Class', '1.39', { + 'source_tmpl': 'Exception-Class-1.39.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('File::CheckTree', '4.42', { + 'source_tmpl': 'File-CheckTree-4.42.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Math::VecStat', '0.08', { + 'source_tmpl': 'Math-VecStat-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AS/ASPINELLI'], + }), + ('Pod::LaTeX', '0.61', { + 'source_tmpl': 'Pod-LaTeX-0.61.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TJ/TJENNESS'], + }), + ('Eval::Closure', '0.13', { + 'source_tmpl': 'Eval-Closure-0.13.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('HTTP::Request', '6.11', { + 'source_tmpl': 'HTTP-Message-6.11.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('XML::Twig', '3.49', { + 'source_tmpl': 'XML-Twig-3.49.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIROD'], + }), + ('IO::String', '1.08', { + 'source_tmpl': 'IO-String-1.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('XML::Simple', '2.20', { + 'source_tmpl': 'XML-Simple-2.20.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + }), + ('Sub::Install', '0.928', { + 'source_tmpl': 'Sub-Install-0.928.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('HTTP::Cookies', '6.01', { + 'source_tmpl': 'HTTP-Cookies-6.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Pod::Plainer', '1.04', { + 'source_tmpl': 'Pod-Plainer-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RM/RMBARKER'], + }), + ('Test::Exception::LessClever', '0.006', { + 'source_tmpl': 'Test-Exception-LessClever-0.006.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('LWP::MediaTypes', '6.02', { + 'source_tmpl': 'LWP-MediaTypes-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Scalar::Util', '1.42', { + 'source_tmpl': 'Scalar-List-Utils-1.42.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PEVANS'], + }), + ('Data::Section::Simple', '0.07', { + 'source_tmpl': 'Data-Section-Simple-0.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + }), + ('IO::Scalar', '2.111', { + 'source_tmpl': 'IO-stringy-2.111.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + }), + ('Class::Trigger', '0.14', { + 'source_tmpl': 'Class-Trigger-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + }), + ('HTTP::Daemon', '6.01', { + 'source_tmpl': 'HTTP-Daemon-6.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('File::HomeDir', '1.00', { + 'source_tmpl': 'File-HomeDir-1.00.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('HTTP::Date', '6.02', { + 'source_tmpl': 'HTTP-Date-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Authen::SASL', '2.16', { + 'source_tmpl': 'Authen-SASL-2.16.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GB/GBARR'], + }), + ('Clone', '0.38', { + 'source_tmpl': 'Clone-0.38.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GARU'], + }), + ('Data::Types', '0.09', { + 'source_tmpl': 'Data-Types-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DW/DWHEELER'], + }), + ('Import::Into', '1.002005', { + 'source_tmpl': 'Import-Into-1.002005.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('DateTime::Tiny', '1.04', { + 'source_tmpl': 'DateTime-Tiny-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('DBD::AnyData', '0.110', { + 'source_tmpl': 'DBD-AnyData-0.110.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('Text::Format', '0.59', { + 'source_tmpl': 'Text-Format-0.59.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('Devel::CheckCompiler', '0.06', { + 'source_tmpl': 'Devel-CheckCompiler-0.06.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + }), + ('Log::Handler', '0.87', { + 'source_tmpl': 'Log-Handler-0.87.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BL/BLOONIX'], + }), + ('DBIx::ContextualFetch', '1.03', { + 'source_tmpl': 'DBIx-ContextualFetch-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM'], + }), + ('HTML::Entities', '3.71', { + 'source_tmpl': 'HTML-Parser-3.71.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Devel::StackTrace', '2.00', { + 'source_tmpl': 'Devel-StackTrace-2.00.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Term::ReadKey', '2.33', { + 'source_tmpl': 'TermReadKey-2.33.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JS/JSTOWE'], + }), + ('Set::IntSpan', '1.19', { + 'source_tmpl': 'Set-IntSpan-1.19.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SW/SWMCD'], + }), + ('Moose', '2.1603', { + 'source_tmpl': 'Moose-2.1603.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Algorithm::Dependency', '1.110', { + 'source_tmpl': 'Algorithm-Dependency-1.110.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Font::TTF', '1.05', { + 'source_tmpl': 'Font-TTF-1.05.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MH/MHOSKEN'], + }), + ('IPC::Run3', '0.048', { + 'source_tmpl': 'IPC-Run3-0.048.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('File::Find::Rule', '0.33', { + 'source_tmpl': 'File-Find-Rule-0.33.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + }), + ('SQL::Statement', '1.407', { + 'source_tmpl': 'SQL-Statement-1.407.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('File::Slurp', '9999.19', { + 'source_tmpl': 'File-Slurp-9999.19.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/U/UR/URI'], + }), + ('Package::Stash', '0.37', { + 'source_tmpl': 'Package-Stash-0.37.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('Data::OptList', '0.109', { + 'source_tmpl': 'Data-OptList-0.109.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('CPANPLUS', '0.9154', { + 'source_tmpl': 'CPANPLUS-0.9154.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Test::Harness', '3.35', { + 'source_tmpl': 'Test-Harness-3.35.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('IO::Tty', '1.12', { + 'source_tmpl': 'IO-Tty-1.12.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('Text::Soundex', '3.04', { + 'source_tmpl': 'Text-Soundex-3.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Lingua::EN::PluralToSingular', '0.14', { + 'source_tmpl': 'Lingua-EN-PluralToSingular-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BK/BKB'], + }), + ('Want', '0.26', { + 'source_tmpl': 'Want-0.26.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN'], + }), + ('Cwd::Guard', '0.04', { + 'source_tmpl': 'Cwd-Guard-0.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + }), + ('Bundle::BioPerl', '2.1.9', { + 'source_tmpl': 'Bundle-BioPerl-2.1.9.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], + }), + ('Mail::Util', '2.14', { + 'source_tmpl': 'MailTools-2.14.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.3-foss-2016a.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.3-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..0dbde8ec2c3048d365ce701964968dc0a14f2263 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.3-foss-2016a.eb @@ -0,0 +1,909 @@ +name = 'Perl' +version = '5.20.3' + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'foss', 'version': '2016a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +exts_list = [ + ('Config::General', '2.58', { + 'source_tmpl': 'Config-General-2.58.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + }), + ('File::Listing', '6.04', { + 'source_tmpl': 'File-Listing-6.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('ExtUtils::InstallPaths', '0.011', { + 'source_tmpl': 'ExtUtils-InstallPaths-0.011.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::Helpers', '0.022', { + 'source_tmpl': 'ExtUtils-Helpers-0.022.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('TAP::Harness::Env', '3.35', { + 'source_tmpl': 'Test-Harness-3.35.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::Config', '0.008', { + 'source_tmpl': 'ExtUtils-Config-0.008.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Module::Build::Tiny', '0.039', { + 'source_tmpl': 'Module-Build-Tiny-0.039.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('aliased', '0.34', { + 'source_tmpl': 'aliased-0.34.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Text::Glob', '0.09', { + 'source_tmpl': 'Text-Glob-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + }), + ('Regexp::Common', '2013031301', { + 'source_tmpl': 'Regexp-Common-2013031301.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], + }), + ('GO::Utils', '0.15', { + 'source_tmpl': 'go-perl-0.15.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + }), + ('Module::Pluggable', '5.2', { + 'source_tmpl': 'Module-Pluggable-5.2.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SI/SIMONW'], + }), + ('Test::Fatal', '0.014', { + 'source_tmpl': 'Test-Fatal-0.014.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Test::Warnings', '0.021', { + 'source_tmpl': 'Test-Warnings-0.021.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('DateTime::Locale', '0.46', { + 'source_tmpl': 'DateTime-Locale-0.46.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('DateTime::TimeZone', '1.93', { + 'source_tmpl': 'DateTime-TimeZone-1.93.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Test::Requires', '0.10', { + 'source_tmpl': 'Test-Requires-0.10.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM'], + }), + ('Module::Implementation', '0.09', { + 'source_tmpl': 'Module-Implementation-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Module::Runtime', '0.014', { + 'source_tmpl': 'Module-Runtime-0.014.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM'], + }), + ('Try::Tiny', '0.22', { + 'source_tmpl': 'Try-Tiny-0.22.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('Params::Validate', '1.21', { + 'source_tmpl': 'Params-Validate-1.21.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('List::MoreUtils', '0.413', { + 'source_tmpl': 'List-MoreUtils-0.413.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('Exporter::Tiny', '0.042', { + 'source_tmpl': 'Exporter-Tiny-0.042.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/T/TO/TOBYINK'], + }), + ('Class::Singleton', '1.5', { + 'source_tmpl': 'Class-Singleton-1.5.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + }), + ('DateTime', '1.20', { + 'source_tmpl': 'DateTime-1.20.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('File::Find::Rule::Perl', '1.15', { + 'source_tmpl': 'File-Find-Rule-Perl-1.15.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Module::Build', '0.4214', { + 'source_tmpl': 'Module-Build-0.4214.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Readonly', '2.00', { + 'source_tmpl': 'Readonly-2.00.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SA/SANKO'], + }), + ('Git', '0.41', { + 'source_tmpl': 'Git-0.41.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSOUTH'], + }), + ('Tree::DAG_Node', '1.27', { + 'source_tmpl': 'Tree-DAG_Node-1.27.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('Template', '2.26', { + 'source_tmpl': 'Template-Toolkit-2.26.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW'], + }), + ('FreezeThaw', '0.5001', { + 'source_tmpl': 'FreezeThaw-0.5001.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IL/ILYAZ/modules'], + }), + ('DBI', '1.634', { + 'source_tmpl': 'DBI-1.634.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TI/TIMB'], + }), + ('DBD::SQLite', '1.48', { + 'source_tmpl': 'DBD-SQLite-1.48.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + }), + ('Math::Bezier', '0.01', { + 'source_tmpl': 'Math-Bezier-0.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW'], + }), + ('Archive::Extract', '0.76', { + 'source_tmpl': 'Archive-Extract-0.76.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('DBIx::Simple', '1.35', { + 'source_tmpl': 'DBIx-Simple-1.35.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JU/JUERD'], + }), + ('Shell', '0.72', { + 'source_tmpl': 'Shell-0.72.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FE/FERREIRA'], + }), + ('File::Spec', '3.47', { + 'source_tmpl': 'PathTools-3.47.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SM/SMUELLER'], + }), + ('ExtUtils::MakeMaker', '7.10', { + 'source_tmpl': 'ExtUtils-MakeMaker-7.10.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Test::Simple', '1.001014', { + 'source_tmpl': 'Test-Simple-1.001014.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Set::Scalar', '1.29', { + 'source_tmpl': 'Set-Scalar-1.29.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAVIDO'], + }), + ('IO::WrapTie', '2.111', { + 'source_tmpl': 'IO-stringy-2.111.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + }), + ('Encode::Locale', '1.05', { + 'source_tmpl': 'Encode-Locale-1.05.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('XML::SAX::Base', '1.08', { + 'source_tmpl': 'XML-SAX-Base-1.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + }), + ('XML::NamespaceSupport', '1.11', { + 'source_tmpl': 'XML-NamespaceSupport-1.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], + }), + ('XML::SAX', '0.99', { + 'source_tmpl': 'XML-SAX-0.99.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + }), + ('Test::LeakTrace', '0.15', { + 'source_tmpl': 'Test-LeakTrace-0.15.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GF/GFUJI'], + }), + ('Test::Exception', '0.40', { + 'source_tmpl': 'Test-Exception-0.40.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Text::Table', '1.130', { + 'source_tmpl': 'Text-Table-1.130.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('MIME::Types', '2.11', { + 'source_tmpl': 'MIME-Types-2.11.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + }), + ('Module::Build::XSUtil', '0.16', { + 'source_tmpl': 'Module-Build-XSUtil-0.16.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HI/HIDEAKIO'], + }), + ('Tie::Function', '0.02', { + 'source_tmpl': 'Tie-Function-0.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAVIDNICO/handy_tied_functions'], + }), + ('Template::Plugin::Number::Format', '1.06', { + 'source_tmpl': 'Template-Plugin-Number-Format-1.06.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DARREN'], + }), + ('HTML::Parser', '3.71', { + 'source_tmpl': 'HTML-Parser-3.71.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Date::Handler', '1.2', { + 'source_tmpl': 'Date-Handler-1.2.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BB/BBEAUSEJ'], + }), + ('Params::Util', '1.07', { + 'source_tmpl': 'Params-Util-1.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('IO::HTML', '1.001', { + 'source_tmpl': 'IO-HTML-1.001.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM'], + }), + ('Data::Grove', '0.08', { + 'source_tmpl': 'libxml-perl-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KM/KMACLEOD'], + }), + ('Class::ISA', '0.36', { + 'source_tmpl': 'Class-ISA-0.36.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SM/SMUELLER'], + }), + ('URI', '1.69', { + 'source_tmpl': 'URI-1.69.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Ima::DBI', '0.35', { + 'source_tmpl': 'Ima-DBI-0.35.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERRIN'], + }), + ('Tie::IxHash', '1.23', { + 'source_tmpl': 'Tie-IxHash-1.23.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + }), + ('GO', '0.04', { + 'source_tmpl': 'go-db-perl-0.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SJ/SJCARBON'], + }), + ('Class::DBI::SQLite', '0.11', { + 'source_tmpl': 'Class-DBI-SQLite-0.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + }), + ('Pod::POM', '2.00', { + 'source_tmpl': 'Pod-POM-2.00.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + }), + ('Math::Round', '0.07', { + 'source_tmpl': 'Math-Round-0.07.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GROMMEL'], + }), + ('Text::Diff', '1.43', { + 'source_tmpl': 'Text-Diff-1.43.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + }), + ('Log::Message::Simple', '0.10', { + 'source_tmpl': 'Log-Message-Simple-0.10.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('IO::Socket::SSL', '2.020', { + 'source_tmpl': 'IO-Socket-SSL-2.020.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SU/SULLR'], + }), + ('Fennec::Lite', '0.004', { + 'source_tmpl': 'Fennec-Lite-0.004.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Sub::Uplevel', '0.25', { + 'source_tmpl': 'Sub-Uplevel-0.25.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/D/DA/DAGOLDEN/'], + }), + ('Meta::Builder', '0.003', { + 'source_tmpl': 'Meta-Builder-0.003.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Exporter::Declare', '0.114', { + 'source_tmpl': 'Exporter-Declare-0.114.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('IO::Stringy', '2.111', { + 'source_tmpl': 'IO-stringy-2.111.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + }), + ('Getopt::Long', '2.47', { + 'source_tmpl': 'Getopt-Long-2.47.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JV/JV'], + }), + ('Log::Message', '0.08', { + 'source_tmpl': 'Log-Message-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Mouse', 'v2.4.5', { + 'source_tmpl': 'Mouse-v2.4.5.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + }), + ('Test::Version', '2.03', { + 'source_tmpl': 'Test-Version-2.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + }), + ('DBIx::Admin::TableInfo', '3.01', { + 'source_tmpl': 'DBIx-Admin-TableInfo-3.01.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('Net::HTTP', '6.09', { + 'source_tmpl': 'Net-HTTP-6.09.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Test::Deep', '0.117', { + 'source_tmpl': 'Test-Deep-0.117.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Test::Warn', '0.30', { + 'source_tmpl': 'Test-Warn-0.30.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + }), + ('MRO::Compat', '0.12', { + 'source_tmpl': 'MRO-Compat-0.12.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BO/BOBTFISH'], + }), + ('Moo', '2.000002', { + 'source_tmpl': 'Moo-2.000002.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('Hash::Merge', '0.200', { + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/R/RE/REHSACK/'], + 'source_tmpl': 'Hash-Merge-0.200.tar.gz', + }), + ('SQL::Abstract', '1.81', { + 'source_tmpl': 'SQL-Abstract-1.81.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RI/RIBASUSHI'], + }), + ('HTML::Form', '6.03', { + 'source_tmpl': 'HTML-Form-6.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('File::Copy::Recursive', '0.38', { + 'source_tmpl': 'File-Copy-Recursive-0.38.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DM/DMUEY'], + }), + ('Number::Compare', '0.03', { + 'source_tmpl': 'Number-Compare-0.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + }), + ('IPC::Run', '0.94', { + 'source_tmpl': 'IPC-Run-0.94.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('HTML::Entities::Interpolate', '1.05', { + 'source_tmpl': 'HTML-Entities-Interpolate-1.05.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('Test::ClassAPI', '1.06', { + 'source_tmpl': 'Test-ClassAPI-1.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Test::Most', '0.34', { + 'source_tmpl': 'Test-Most-0.34.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID'], + }), + ('Class::Accessor', '0.34', { + 'source_tmpl': 'Class-Accessor-0.34.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KASEI'], + }), + ('Test::Differences', '0.63', { + 'source_tmpl': 'Test-Differences-0.63.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DC/DCANTRELL'], + }), + ('HTTP::Tiny', '0.056', { + 'source_tmpl': 'HTTP-Tiny-0.056.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + ('Package::DeprecationManager', '0.14', { + 'source_tmpl': 'Package-DeprecationManager-0.14.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Digest::SHA1', '2.13', { + 'source_tmpl': 'Digest-SHA1-2.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Date::Language', '2.30', { + 'source_tmpl': 'TimeDate-2.30.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GB/GBARR'], + }), + ('version', '0.9912', { + 'source_tmpl': 'version-0.9912.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JP/JPEACOCK'], + }), + ('Sub::Uplevel', '0.25', { + 'source_tmpl': 'Sub-Uplevel-0.25.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + # fails: uses 'gcc' + #('XML::Bare', '0.53', { + # 'source_tmpl': 'XML-Bare-0.53.tar.gz', + # 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CO/CODECHILD'], + #}), + ('Dist::CheckConflicts', '0.11', { + 'source_tmpl': 'Dist-CheckConflicts-0.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('Sub::Name', '0.14', { + 'source_tmpl': 'Sub-Name-0.14.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Time::Piece', '1.30', { + 'source_tmpl': 'Time-Piece-1.30.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Digest::HMAC', '1.03', { + 'source_tmpl': 'Digest-HMAC-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('HTTP::Negotiate', '6.01', { + 'source_tmpl': 'HTTP-Negotiate-6.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('MIME::Lite', '3.030', { + 'source_tmpl': 'MIME-Lite-3.030.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Crypt::Rijndael', '1.13', { + 'source_tmpl': 'Crypt-Rijndael-1.13.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('B::Lint', '1.20', { + 'source_tmpl': 'B-Lint-1.20.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Canary::Stability', '2006', { + 'source_tmpl': 'Canary-Stability-2006.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN'], + }), + ('AnyEvent', '7.11', { + 'source_tmpl': 'AnyEvent-7.11.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN'], + }), + ('Object::Accessor', '0.48', { + 'source_tmpl': 'Object-Accessor-0.48.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Data::UUID', '1.221', { + 'source_tmpl': 'Data-UUID-1.221.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Test::Pod', '1.51', { + 'source_tmpl': 'Test-Pod-1.51.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('AppConfig', '1.71', { + 'source_tmpl': 'AppConfig-1.71.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + }), + ('Net::SMTP::SSL', '1.03', { + 'source_tmpl': 'Net-SMTP-SSL-1.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('XML::Tiny', '2.06', { + 'source_tmpl': 'XML-Tiny-2.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DC/DCANTRELL'], + }), + ('HTML::Tagset', '3.20', { + 'source_tmpl': 'HTML-Tagset-3.20.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PETDANCE'], + }), + ('HTML::Tree', '5.03', { + 'source_tmpl': 'HTML-Tree-5.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM'], + }), + ('Devel::GlobalDestruction', '0.13', { + 'source_tmpl': 'Devel-GlobalDestruction-0.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('WWW::RobotRules', '6.02', { + 'source_tmpl': 'WWW-RobotRules-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Expect', '1.32', { + 'source_tmpl': 'Expect-1.32.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SZ/SZABGAB'], + }), + ('Term::UI', '0.46', { + 'source_tmpl': 'Term-UI-0.46.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Net::SNMP', 'v6.0.1', { + 'source_tmpl': 'Net-SNMP-v6.0.1.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DT/DTOWN'], + }), + ('XML::SAX::Writer', '0.56', { + 'source_tmpl': 'XML-SAX-Writer-0.56.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], + }), + ('Statistics::Descriptive', '3.0609', { + 'source_tmpl': 'Statistics-Descriptive-3.0609.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('Class::Load', '0.23', { + 'source_tmpl': 'Class-Load-0.23.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('LWP::Simple', '6.13', { + 'source_tmpl': 'libwww-perl-6.13.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Time::Piece::MySQL', '0.06', { + 'source_tmpl': 'Time-Piece-MySQL-0.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KASEI'], + }), + ('Package::Stash::XS', '0.28', { + 'source_tmpl': 'Package-Stash-XS-0.28.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('GD::Graph', '1.49', { + 'source_tmpl': 'GDGraph-1.49.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RU/RUZ'], + }), + ('Set::Array', '0.30', { + 'source_tmpl': 'Set-Array-0.30.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('boolean', '0.45', { + 'source_tmpl': 'boolean-0.45.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IN/INGY'], + }), + ('Number::Format', '1.75', { + 'source_tmpl': 'Number-Format-1.75.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/W/WR/WRW'], + }), + ('Data::Stag', '0.14', { + 'source_tmpl': 'Data-Stag-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + }), + ('Test::Tester', '1.001014', { + 'source_tmpl': 'Test-Simple-1.001014.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Test::NoWarnings', '1.04', { + 'source_tmpl': 'Test-NoWarnings-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Crypt::DES', '2.07', { + 'source_tmpl': 'Crypt-DES-2.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DP/DPARIS'], + }), + ('Exporter', '5.72', { + 'source_tmpl': 'Exporter-5.72.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('Class::Inspector', '1.28', { + 'source_tmpl': 'Class-Inspector-1.28.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Parse::RecDescent', '1.967012', { + 'source_tmpl': 'Parse-RecDescent-1.967012.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JT/JTBRAUN'], + }), + ('Carp', '1.36', { + 'source_tmpl': 'Carp-1.36.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('XML::XPath', '1.13', { + 'source_tmpl': 'XML-XPath-1.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MS/MSERGEANT'], + }), + ('Capture::Tiny', '0.30', { + 'source_tmpl': 'Capture-Tiny-0.30.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + ('JSON', '2.90', { + 'source_tmpl': 'JSON-2.90.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA'], + }), + ('Sub::Exporter', '0.987', { + 'source_tmpl': 'Sub-Exporter-0.987.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Class::Load::XS', '0.09', { + 'source_tmpl': 'Class-Load-XS-0.09.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Set::IntSpan::Fast', '1.15', { + 'source_tmpl': 'Set-IntSpan-Fast-1.15.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AN/ANDYA'], + }), + ('Sub::Exporter::Progressive', '0.001011', { + 'source_tmpl': 'Sub-Exporter-Progressive-0.001011.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW'], + }), + ('LWP', '6.13', { + 'source_tmpl': 'libwww-perl-6.13.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Data::Dumper::Concise', '2.022', { + 'source_tmpl': 'Data-Dumper-Concise-2.022.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW'], + }), + ('File::Slurp::Tiny', '0.004', { + 'source_tmpl': 'File-Slurp-Tiny-0.004.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Algorithm::Diff', '1.1903', { + 'source_tmpl': 'Algorithm-Diff-1.1903.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TY/TYEMQ'], + }), + ('AnyData', '0.12', { + 'source_tmpl': 'AnyData-0.12.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('Text::Iconv', '1.7', { + 'source_tmpl': 'Text-Iconv-1.7.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MP/MPIOTR'], + }), + ('Class::Data::Inheritable', '0.08', { + 'source_tmpl': 'Class-Data-Inheritable-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM'], + }), + ('Text::Balanced', '2.03', { + 'source_tmpl': 'Text-Balanced-2.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + }), + ('strictures', '2.000001', { + 'source_tmpl': 'strictures-2.000001.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('Switch', '2.17', { + 'source_tmpl': 'Switch-2.17.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + }), + ('File::Which', '1.19', { + 'source_tmpl': 'File-Which-1.19.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + }), + ('Email::Date::Format', '1.005', { + 'source_tmpl': 'Email-Date-Format-1.005.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Error', '0.17024', { + 'source_tmpl': 'Error-0.17024.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('Mock::Quick', '1.110', { + 'source_tmpl': 'Mock-Quick-1.110.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Text::CSV', '1.33', { + 'source_tmpl': 'Text-CSV-1.33.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA'], + }), + ('Test::Output', '1.03', { + 'source_tmpl': 'Test-Output-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BD/BDFOY'], + }), + ('Class::DBI', 'v3.0.17', { + 'source_tmpl': 'Class-DBI-v3.0.17.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM'], + }), + ('List::AllUtils', '0.09', { + 'source_tmpl': 'List-AllUtils-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('UNIVERSAL::moniker', '0.08', { + 'source_tmpl': 'UNIVERSAL-moniker-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KASEI'], + }), + ('Exception::Class', '1.39', { + 'source_tmpl': 'Exception-Class-1.39.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('File::CheckTree', '4.42', { + 'source_tmpl': 'File-CheckTree-4.42.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Math::VecStat', '0.08', { + 'source_tmpl': 'Math-VecStat-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AS/ASPINELLI'], + }), + ('Pod::LaTeX', '0.61', { + 'source_tmpl': 'Pod-LaTeX-0.61.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TJ/TJENNESS'], + }), + ('Eval::Closure', '0.13', { + 'source_tmpl': 'Eval-Closure-0.13.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('HTTP::Request', '6.11', { + 'source_tmpl': 'HTTP-Message-6.11.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('XML::Twig', '3.49', { + 'source_tmpl': 'XML-Twig-3.49.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIROD'], + }), + ('IO::String', '1.08', { + 'source_tmpl': 'IO-String-1.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('XML::Simple', '2.20', { + 'source_tmpl': 'XML-Simple-2.20.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + }), + ('Sub::Install', '0.928', { + 'source_tmpl': 'Sub-Install-0.928.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('HTTP::Cookies', '6.01', { + 'source_tmpl': 'HTTP-Cookies-6.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Pod::Plainer', '1.04', { + 'source_tmpl': 'Pod-Plainer-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RM/RMBARKER'], + }), + ('Test::Exception::LessClever', '0.006', { + 'source_tmpl': 'Test-Exception-LessClever-0.006.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('LWP::MediaTypes', '6.02', { + 'source_tmpl': 'LWP-MediaTypes-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Scalar::Util', '1.42', { + 'source_tmpl': 'Scalar-List-Utils-1.42.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PEVANS'], + }), + ('Data::Section::Simple', '0.07', { + 'source_tmpl': 'Data-Section-Simple-0.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + }), + ('IO::Scalar', '2.111', { + 'source_tmpl': 'IO-stringy-2.111.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + }), + ('Class::Trigger', '0.14', { + 'source_tmpl': 'Class-Trigger-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + }), + ('HTTP::Daemon', '6.01', { + 'source_tmpl': 'HTTP-Daemon-6.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('File::HomeDir', '1.00', { + 'source_tmpl': 'File-HomeDir-1.00.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('HTTP::Date', '6.02', { + 'source_tmpl': 'HTTP-Date-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Authen::SASL', '2.16', { + 'source_tmpl': 'Authen-SASL-2.16.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GB/GBARR'], + }), + ('Clone', '0.38', { + 'source_tmpl': 'Clone-0.38.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GARU'], + }), + ('Data::Types', '0.09', { + 'source_tmpl': 'Data-Types-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DW/DWHEELER'], + }), + ('Import::Into', '1.002005', { + 'source_tmpl': 'Import-Into-1.002005.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('DateTime::Tiny', '1.04', { + 'source_tmpl': 'DateTime-Tiny-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('DBD::AnyData', '0.110', { + 'source_tmpl': 'DBD-AnyData-0.110.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('Text::Format', '0.59', { + 'source_tmpl': 'Text-Format-0.59.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('Devel::CheckCompiler', '0.06', { + 'source_tmpl': 'Devel-CheckCompiler-0.06.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + }), + ('Log::Handler', '0.87', { + 'source_tmpl': 'Log-Handler-0.87.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BL/BLOONIX'], + }), + ('DBIx::ContextualFetch', '1.03', { + 'source_tmpl': 'DBIx-ContextualFetch-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM'], + }), + ('HTML::Entities', '3.71', { + 'source_tmpl': 'HTML-Parser-3.71.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Devel::StackTrace', '2.00', { + 'source_tmpl': 'Devel-StackTrace-2.00.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Term::ReadKey', '2.33', { + 'source_tmpl': 'TermReadKey-2.33.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JS/JSTOWE'], + }), + ('Set::IntSpan', '1.19', { + 'source_tmpl': 'Set-IntSpan-1.19.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SW/SWMCD'], + }), + ('Moose', '2.1603', { + 'source_tmpl': 'Moose-2.1603.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Algorithm::Dependency', '1.110', { + 'source_tmpl': 'Algorithm-Dependency-1.110.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Font::TTF', '1.05', { + 'source_tmpl': 'Font-TTF-1.05.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MH/MHOSKEN'], + }), + ('IPC::Run3', '0.048', { + 'source_tmpl': 'IPC-Run3-0.048.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('File::Find::Rule', '0.33', { + 'source_tmpl': 'File-Find-Rule-0.33.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + }), + ('SQL::Statement', '1.407', { + 'source_tmpl': 'SQL-Statement-1.407.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('File::Slurp', '9999.19', { + 'source_tmpl': 'File-Slurp-9999.19.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/U/UR/URI'], + }), + ('Package::Stash', '0.37', { + 'source_tmpl': 'Package-Stash-0.37.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('Data::OptList', '0.109', { + 'source_tmpl': 'Data-OptList-0.109.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('CPANPLUS', '0.9154', { + 'source_tmpl': 'CPANPLUS-0.9154.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Test::Harness', '3.35', { + 'source_tmpl': 'Test-Harness-3.35.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('IO::Tty', '1.12', { + 'source_tmpl': 'IO-Tty-1.12.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('Text::Soundex', '3.04', { + 'source_tmpl': 'Text-Soundex-3.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Lingua::EN::PluralToSingular', '0.14', { + 'source_tmpl': 'Lingua-EN-PluralToSingular-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BK/BKB'], + }), + ('Want', '0.26', { + 'source_tmpl': 'Want-0.26.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN'], + }), + ('Cwd::Guard', '0.04', { + 'source_tmpl': 'Cwd-Guard-0.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + }), + ('Bundle::BioPerl', '2.1.9', { + 'source_tmpl': 'Bundle-BioPerl-2.1.9.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], + }), + ('Mail::Util', '2.14', { + 'source_tmpl': 'MailTools-2.14.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.20.3-intel-2016a.eb b/easybuild/easyconfigs/p/Perl/Perl-5.20.3-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..146a854c211301bfbde72ae0de055029b46c5379 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.20.3-intel-2016a.eb @@ -0,0 +1,909 @@ +name = 'Perl' +version = '5.20.3' + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/src/5.0'] +sources = [SOURCELOWER_TAR_GZ] + +exts_list = [ + ('Config::General', '2.58', { + 'source_tmpl': 'Config-General-2.58.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TL/TLINDEN'], + }), + ('File::Listing', '6.04', { + 'source_tmpl': 'File-Listing-6.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('ExtUtils::InstallPaths', '0.011', { + 'source_tmpl': 'ExtUtils-InstallPaths-0.011.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::Helpers', '0.022', { + 'source_tmpl': 'ExtUtils-Helpers-0.022.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('TAP::Harness::Env', '3.35', { + 'source_tmpl': 'Test-Harness-3.35.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('ExtUtils::Config', '0.008', { + 'source_tmpl': 'ExtUtils-Config-0.008.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Module::Build::Tiny', '0.039', { + 'source_tmpl': 'Module-Build-Tiny-0.039.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('aliased', '0.34', { + 'source_tmpl': 'aliased-0.34.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Text::Glob', '0.09', { + 'source_tmpl': 'Text-Glob-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + }), + ('Regexp::Common', '2013031301', { + 'source_tmpl': 'Regexp-Common-2013031301.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABIGAIL'], + }), + ('GO::Utils', '0.15', { + 'source_tmpl': 'go-perl-0.15.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + }), + ('Module::Pluggable', '5.2', { + 'source_tmpl': 'Module-Pluggable-5.2.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SI/SIMONW'], + }), + ('Test::Fatal', '0.014', { + 'source_tmpl': 'Test-Fatal-0.014.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Test::Warnings', '0.021', { + 'source_tmpl': 'Test-Warnings-0.021.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('DateTime::Locale', '0.46', { + 'source_tmpl': 'DateTime-Locale-0.46.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('DateTime::TimeZone', '1.93', { + 'source_tmpl': 'DateTime-TimeZone-1.93.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Test::Requires', '0.10', { + 'source_tmpl': 'Test-Requires-0.10.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TOKUHIROM'], + }), + ('Module::Implementation', '0.09', { + 'source_tmpl': 'Module-Implementation-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Module::Runtime', '0.014', { + 'source_tmpl': 'Module-Runtime-0.014.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/Z/ZE/ZEFRAM'], + }), + ('Try::Tiny', '0.22', { + 'source_tmpl': 'Try-Tiny-0.22.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('Params::Validate', '1.21', { + 'source_tmpl': 'Params-Validate-1.21.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('List::MoreUtils', '0.413', { + 'source_tmpl': 'List-MoreUtils-0.413.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('Exporter::Tiny', '0.042', { + 'source_tmpl': 'Exporter-Tiny-0.042.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/T/TO/TOBYINK'], + }), + ('Class::Singleton', '1.5', { + 'source_tmpl': 'Class-Singleton-1.5.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + }), + ('DateTime', '1.20', { + 'source_tmpl': 'DateTime-1.20.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('File::Find::Rule::Perl', '1.15', { + 'source_tmpl': 'File-Find-Rule-Perl-1.15.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Module::Build', '0.4214', { + 'source_tmpl': 'Module-Build-0.4214.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Readonly', '2.00', { + 'source_tmpl': 'Readonly-2.00.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SA/SANKO'], + }), + ('Git', '0.41', { + 'source_tmpl': 'Git-0.41.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MS/MSOUTH'], + }), + ('Tree::DAG_Node', '1.27', { + 'source_tmpl': 'Tree-DAG_Node-1.27.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('Template', '2.26', { + 'source_tmpl': 'Template-Toolkit-2.26.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW'], + }), + ('FreezeThaw', '0.5001', { + 'source_tmpl': 'FreezeThaw-0.5001.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/I/IL/ILYAZ/modules'], + }), + ('DBI', '1.634', { + 'source_tmpl': 'DBI-1.634.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TI/TIMB'], + }), + ('DBD::SQLite', '1.48', { + 'source_tmpl': 'DBD-SQLite-1.48.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IS/ISHIGAKI'], + }), + ('Math::Bezier', '0.01', { + 'source_tmpl': 'Math-Bezier-0.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AB/ABW'], + }), + ('Archive::Extract', '0.76', { + 'source_tmpl': 'Archive-Extract-0.76.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('DBIx::Simple', '1.35', { + 'source_tmpl': 'DBIx-Simple-1.35.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/J/JU/JUERD'], + }), + ('Shell', '0.72', { + 'source_tmpl': 'Shell-0.72.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FE/FERREIRA'], + }), + ('File::Spec', '3.47', { + 'source_tmpl': 'PathTools-3.47.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SM/SMUELLER'], + }), + ('ExtUtils::MakeMaker', '7.10', { + 'source_tmpl': 'ExtUtils-MakeMaker-7.10.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Test::Simple', '1.001014', { + 'source_tmpl': 'Test-Simple-1.001014.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Set::Scalar', '1.29', { + 'source_tmpl': 'Set-Scalar-1.29.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAVIDO'], + }), + ('IO::WrapTie', '2.111', { + 'source_tmpl': 'IO-stringy-2.111.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + }), + ('Encode::Locale', '1.05', { + 'source_tmpl': 'Encode-Locale-1.05.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('XML::SAX::Base', '1.08', { + 'source_tmpl': 'XML-SAX-Base-1.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + }), + ('XML::NamespaceSupport', '1.11', { + 'source_tmpl': 'XML-NamespaceSupport-1.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], + }), + ('XML::SAX', '0.99', { + 'source_tmpl': 'XML-SAX-0.99.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + }), + ('Test::LeakTrace', '0.15', { + 'source_tmpl': 'Test-LeakTrace-0.15.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GF/GFUJI'], + }), + ('Test::Exception', '0.40', { + 'source_tmpl': 'Test-Exception-0.40.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Text::Table', '1.130', { + 'source_tmpl': 'Text-Table-1.130.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('MIME::Types', '2.11', { + 'source_tmpl': 'MIME-Types-2.11.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + }), + ('Module::Build::XSUtil', '0.16', { + 'source_tmpl': 'Module-Build-XSUtil-0.16.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HI/HIDEAKIO'], + }), + ('Tie::Function', '0.02', { + 'source_tmpl': 'Tie-Function-0.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DA/DAVIDNICO/handy_tied_functions'], + }), + ('Template::Plugin::Number::Format', '1.06', { + 'source_tmpl': 'Template-Plugin-Number-Format-1.06.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DARREN'], + }), + ('HTML::Parser', '3.71', { + 'source_tmpl': 'HTML-Parser-3.71.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Date::Handler', '1.2', { + 'source_tmpl': 'Date-Handler-1.2.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BB/BBEAUSEJ'], + }), + ('Params::Util', '1.07', { + 'source_tmpl': 'Params-Util-1.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('IO::HTML', '1.001', { + 'source_tmpl': 'IO-HTML-1.001.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM'], + }), + ('Data::Grove', '0.08', { + 'source_tmpl': 'libxml-perl-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KM/KMACLEOD'], + }), + ('Class::ISA', '0.36', { + 'source_tmpl': 'Class-ISA-0.36.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SM/SMUELLER'], + }), + ('URI', '1.69', { + 'source_tmpl': 'URI-1.69.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Ima::DBI', '0.35', { + 'source_tmpl': 'Ima-DBI-0.35.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PERRIN'], + }), + ('Tie::IxHash', '1.23', { + 'source_tmpl': 'Tie-IxHash-1.23.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + }), + ('GO', '0.04', { + 'source_tmpl': 'go-db-perl-0.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SJ/SJCARBON'], + }), + ('Class::DBI::SQLite', '0.11', { + 'source_tmpl': 'Class-DBI-SQLite-0.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + }), + ('Pod::POM', '2.00', { + 'source_tmpl': 'Pod-POM-2.00.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + }), + ('Math::Round', '0.07', { + 'source_tmpl': 'Math-Round-0.07.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GR/GROMMEL'], + }), + ('Text::Diff', '1.43', { + 'source_tmpl': 'Text-Diff-1.43.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + }), + ('Log::Message::Simple', '0.10', { + 'source_tmpl': 'Log-Message-Simple-0.10.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('IO::Socket::SSL', '2.020', { + 'source_tmpl': 'IO-Socket-SSL-2.020.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SU/SULLR'], + }), + ('Fennec::Lite', '0.004', { + 'source_tmpl': 'Fennec-Lite-0.004.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Sub::Uplevel', '0.25', { + 'source_tmpl': 'Sub-Uplevel-0.25.tar.gz', + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/D/DA/DAGOLDEN/'], + }), + ('Meta::Builder', '0.003', { + 'source_tmpl': 'Meta-Builder-0.003.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Exporter::Declare', '0.114', { + 'source_tmpl': 'Exporter-Declare-0.114.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('IO::Stringy', '2.111', { + 'source_tmpl': 'IO-stringy-2.111.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + }), + ('Getopt::Long', '2.47', { + 'source_tmpl': 'Getopt-Long-2.47.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JV/JV'], + }), + ('Log::Message', '0.08', { + 'source_tmpl': 'Log-Message-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Mouse', 'v2.4.5', { + 'source_tmpl': 'Mouse-v2.4.5.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + }), + ('Test::Version', '2.03', { + 'source_tmpl': 'Test-Version-2.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + }), + ('DBIx::Admin::TableInfo', '3.01', { + 'source_tmpl': 'DBIx-Admin-TableInfo-3.01.tgz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('Net::HTTP', '6.09', { + 'source_tmpl': 'Net-HTTP-6.09.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Test::Deep', '0.117', { + 'source_tmpl': 'Test-Deep-0.117.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Test::Warn', '0.30', { + 'source_tmpl': 'Test-Warn-0.30.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + }), + ('MRO::Compat', '0.12', { + 'source_tmpl': 'MRO-Compat-0.12.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BO/BOBTFISH'], + }), + ('Moo', '2.000002', { + 'source_tmpl': 'Moo-2.000002.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('Hash::Merge', '0.200', { + 'source_urls': ['http://search.cpan.org/CPAN/authors/id/R/RE/REHSACK/'], + 'source_tmpl': 'Hash-Merge-0.200.tar.gz', + }), + ('SQL::Abstract', '1.81', { + 'source_tmpl': 'SQL-Abstract-1.81.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RI/RIBASUSHI'], + }), + ('HTML::Form', '6.03', { + 'source_tmpl': 'HTML-Form-6.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('File::Copy::Recursive', '0.38', { + 'source_tmpl': 'File-Copy-Recursive-0.38.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DM/DMUEY'], + }), + ('Number::Compare', '0.03', { + 'source_tmpl': 'Number-Compare-0.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + }), + ('IPC::Run', '0.94', { + 'source_tmpl': 'IPC-Run-0.94.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('HTML::Entities::Interpolate', '1.05', { + 'source_tmpl': 'HTML-Entities-Interpolate-1.05.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('Test::ClassAPI', '1.06', { + 'source_tmpl': 'Test-ClassAPI-1.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Test::Most', '0.34', { + 'source_tmpl': 'Test-Most-0.34.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/O/OV/OVID'], + }), + ('Class::Accessor', '0.34', { + 'source_tmpl': 'Class-Accessor-0.34.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KASEI'], + }), + ('Test::Differences', '0.63', { + 'source_tmpl': 'Test-Differences-0.63.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DC/DCANTRELL'], + }), + ('HTTP::Tiny', '0.056', { + 'source_tmpl': 'HTTP-Tiny-0.056.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + ('Package::DeprecationManager', '0.14', { + 'source_tmpl': 'Package-DeprecationManager-0.14.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Digest::SHA1', '2.13', { + 'source_tmpl': 'Digest-SHA1-2.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Date::Language', '2.30', { + 'source_tmpl': 'TimeDate-2.30.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GB/GBARR'], + }), + ('version', '0.9912', { + 'source_tmpl': 'version-0.9912.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JP/JPEACOCK'], + }), + ('Sub::Uplevel', '0.25', { + 'source_tmpl': 'Sub-Uplevel-0.25.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + # fails: uses 'gcc' + #('XML::Bare', '0.53', { + # 'source_tmpl': 'XML-Bare-0.53.tar.gz', + # 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CO/CODECHILD'], + #}), + ('Dist::CheckConflicts', '0.11', { + 'source_tmpl': 'Dist-CheckConflicts-0.11.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('Sub::Name', '0.14', { + 'source_tmpl': 'Sub-Name-0.14.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Time::Piece', '1.30', { + 'source_tmpl': 'Time-Piece-1.30.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Digest::HMAC', '1.03', { + 'source_tmpl': 'Digest-HMAC-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('HTTP::Negotiate', '6.01', { + 'source_tmpl': 'HTTP-Negotiate-6.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('MIME::Lite', '3.030', { + 'source_tmpl': 'MIME-Lite-3.030.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Crypt::Rijndael', '1.13', { + 'source_tmpl': 'Crypt-Rijndael-1.13.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('B::Lint', '1.20', { + 'source_tmpl': 'B-Lint-1.20.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Canary::Stability', '2006', { + 'source_tmpl': 'Canary-Stability-2006.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN'], + }), + ('AnyEvent', '7.11', { + 'source_tmpl': 'AnyEvent-7.11.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/ML/MLEHMANN'], + }), + ('Object::Accessor', '0.48', { + 'source_tmpl': 'Object-Accessor-0.48.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Data::UUID', '1.221', { + 'source_tmpl': 'Data-UUID-1.221.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Test::Pod', '1.51', { + 'source_tmpl': 'Test-Pod-1.51.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('AppConfig', '1.71', { + 'source_tmpl': 'AppConfig-1.71.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/N/NE/NEILB'], + }), + ('Net::SMTP::SSL', '1.03', { + 'source_tmpl': 'Net-SMTP-SSL-1.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('XML::Tiny', '2.06', { + 'source_tmpl': 'XML-Tiny-2.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DC/DCANTRELL'], + }), + ('HTML::Tagset', '3.20', { + 'source_tmpl': 'HTML-Tagset-3.20.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/P/PE/PETDANCE'], + }), + ('HTML::Tree', '5.03', { + 'source_tmpl': 'HTML-Tree-5.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CJ/CJM'], + }), + ('Devel::GlobalDestruction', '0.13', { + 'source_tmpl': 'Devel-GlobalDestruction-0.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('WWW::RobotRules', '6.02', { + 'source_tmpl': 'WWW-RobotRules-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Expect', '1.32', { + 'source_tmpl': 'Expect-1.32.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SZ/SZABGAB'], + }), + ('Term::UI', '0.46', { + 'source_tmpl': 'Term-UI-0.46.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Net::SNMP', 'v6.0.1', { + 'source_tmpl': 'Net-SNMP-v6.0.1.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DT/DTOWN'], + }), + ('XML::SAX::Writer', '0.56', { + 'source_tmpl': 'XML-SAX-Writer-0.56.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PERIGRIN'], + }), + ('Statistics::Descriptive', '3.0609', { + 'source_tmpl': 'Statistics-Descriptive-3.0609.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('Class::Load', '0.23', { + 'source_tmpl': 'Class-Load-0.23.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('LWP::Simple', '6.13', { + 'source_tmpl': 'libwww-perl-6.13.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Time::Piece::MySQL', '0.06', { + 'source_tmpl': 'Time-Piece-MySQL-0.06.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KASEI'], + }), + ('Package::Stash::XS', '0.28', { + 'source_tmpl': 'Package-Stash-XS-0.28.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('GD::Graph', '1.49', { + 'source_tmpl': 'GDGraph-1.49.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RU/RUZ'], + }), + ('Set::Array', '0.30', { + 'source_tmpl': 'Set-Array-0.30.tgz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RS/RSAVAGE'], + }), + ('boolean', '0.45', { + 'source_tmpl': 'boolean-0.45.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IN/INGY'], + }), + ('Number::Format', '1.75', { + 'source_tmpl': 'Number-Format-1.75.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/W/WR/WRW'], + }), + ('Data::Stag', '0.14', { + 'source_tmpl': 'Data-Stag-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CM/CMUNGALL'], + }), + ('Test::Tester', '1.001014', { + 'source_tmpl': 'Test-Simple-1.001014.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Test::NoWarnings', '1.04', { + 'source_tmpl': 'Test-NoWarnings-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Crypt::DES', '2.07', { + 'source_tmpl': 'Crypt-DES-2.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DP/DPARIS'], + }), + ('Exporter', '5.72', { + 'source_tmpl': 'Exporter-5.72.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('Class::Inspector', '1.28', { + 'source_tmpl': 'Class-Inspector-1.28.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Parse::RecDescent', '1.967012', { + 'source_tmpl': 'Parse-RecDescent-1.967012.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JT/JTBRAUN'], + }), + ('Carp', '1.36', { + 'source_tmpl': 'Carp-1.36.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('XML::XPath', '1.13', { + 'source_tmpl': 'XML-XPath-1.13.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MS/MSERGEANT'], + }), + ('Capture::Tiny', '0.30', { + 'source_tmpl': 'Capture-Tiny-0.30.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DA/DAGOLDEN'], + }), + ('JSON', '2.90', { + 'source_tmpl': 'JSON-2.90.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA'], + }), + ('Sub::Exporter', '0.987', { + 'source_tmpl': 'Sub-Exporter-0.987.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Class::Load::XS', '0.09', { + 'source_tmpl': 'Class-Load-XS-0.09.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Set::IntSpan::Fast', '1.15', { + 'source_tmpl': 'Set-IntSpan-Fast-1.15.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AN/ANDYA'], + }), + ('Sub::Exporter::Progressive', '0.001011', { + 'source_tmpl': 'Sub-Exporter-Progressive-0.001011.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW'], + }), + ('LWP', '6.13', { + 'source_tmpl': 'libwww-perl-6.13.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Data::Dumper::Concise', '2.022', { + 'source_tmpl': 'Data-Dumper-Concise-2.022.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/F/FR/FREW'], + }), + ('File::Slurp::Tiny', '0.004', { + 'source_tmpl': 'File-Slurp-Tiny-0.004.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('Algorithm::Diff', '1.1903', { + 'source_tmpl': 'Algorithm-Diff-1.1903.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TY/TYEMQ'], + }), + ('AnyData', '0.12', { + 'source_tmpl': 'AnyData-0.12.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('Text::Iconv', '1.7', { + 'source_tmpl': 'Text-Iconv-1.7.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MP/MPIOTR'], + }), + ('Class::Data::Inheritable', '0.08', { + 'source_tmpl': 'Class-Data-Inheritable-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM'], + }), + ('Text::Balanced', '2.03', { + 'source_tmpl': 'Text-Balanced-2.03.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHAY'], + }), + ('strictures', '2.000001', { + 'source_tmpl': 'strictures-2.000001.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('Switch', '2.17', { + 'source_tmpl': 'Switch-2.17.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/C/CH/CHORNY'], + }), + ('File::Which', '1.19', { + 'source_tmpl': 'File-Which-1.19.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PL/PLICEASE'], + }), + ('Email::Date::Format', '1.005', { + 'source_tmpl': 'Email-Date-Format-1.005.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Error', '0.17024', { + 'source_tmpl': 'Error-0.17024.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('Mock::Quick', '1.110', { + 'source_tmpl': 'Mock-Quick-1.110.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('Text::CSV', '1.33', { + 'source_tmpl': 'Text-CSV-1.33.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MAKAMAKA'], + }), + ('Test::Output', '1.03', { + 'source_tmpl': 'Test-Output-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BD/BDFOY'], + }), + ('Class::DBI', 'v3.0.17', { + 'source_tmpl': 'Class-DBI-v3.0.17.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM'], + }), + ('List::AllUtils', '0.09', { + 'source_tmpl': 'List-AllUtils-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('UNIVERSAL::moniker', '0.08', { + 'source_tmpl': 'UNIVERSAL-moniker-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KASEI'], + }), + ('Exception::Class', '1.39', { + 'source_tmpl': 'Exception-Class-1.39.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('File::CheckTree', '4.42', { + 'source_tmpl': 'File-CheckTree-4.42.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Math::VecStat', '0.08', { + 'source_tmpl': 'Math-VecStat-0.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AS/ASPINELLI'], + }), + ('Pod::LaTeX', '0.61', { + 'source_tmpl': 'Pod-LaTeX-0.61.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TJ/TJENNESS'], + }), + ('Eval::Closure', '0.13', { + 'source_tmpl': 'Eval-Closure-0.13.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('HTTP::Request', '6.11', { + 'source_tmpl': 'HTTP-Message-6.11.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('XML::Twig', '3.49', { + 'source_tmpl': 'XML-Twig-3.49.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MI/MIROD'], + }), + ('IO::String', '1.08', { + 'source_tmpl': 'IO-String-1.08.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('XML::Simple', '2.20', { + 'source_tmpl': 'XML-Simple-2.20.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GR/GRANTM'], + }), + ('Sub::Install', '0.928', { + 'source_tmpl': 'Sub-Install-0.928.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('HTTP::Cookies', '6.01', { + 'source_tmpl': 'HTTP-Cookies-6.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Pod::Plainer', '1.04', { + 'source_tmpl': 'Pod-Plainer-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RM/RMBARKER'], + }), + ('Test::Exception::LessClever', '0.006', { + 'source_tmpl': 'Test-Exception-LessClever-0.006.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/E/EX/EXODIST'], + }), + ('LWP::MediaTypes', '6.02', { + 'source_tmpl': 'LWP-MediaTypes-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Scalar::Util', '1.42', { + 'source_tmpl': 'Scalar-List-Utils-1.42.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PE/PEVANS'], + }), + ('Data::Section::Simple', '0.07', { + 'source_tmpl': 'Data-Section-Simple-0.07.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + }), + ('IO::Scalar', '2.111', { + 'source_tmpl': 'IO-stringy-2.111.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DS/DSKOLL'], + }), + ('Class::Trigger', '0.14', { + 'source_tmpl': 'Class-Trigger-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/M/MI/MIYAGAWA'], + }), + ('HTTP::Daemon', '6.01', { + 'source_tmpl': 'HTTP-Daemon-6.01.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('File::HomeDir', '1.00', { + 'source_tmpl': 'File-HomeDir-1.00.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('HTTP::Date', '6.02', { + 'source_tmpl': 'HTTP-Date-6.02.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Authen::SASL', '2.16', { + 'source_tmpl': 'Authen-SASL-2.16.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GB/GBARR'], + }), + ('Clone', '0.38', { + 'source_tmpl': 'Clone-0.38.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/G/GA/GARU'], + }), + ('Data::Types', '0.09', { + 'source_tmpl': 'Data-Types-0.09.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DW/DWHEELER'], + }), + ('Import::Into', '1.002005', { + 'source_tmpl': 'Import-Into-1.002005.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/H/HA/HAARG'], + }), + ('DateTime::Tiny', '1.04', { + 'source_tmpl': 'DateTime-Tiny-1.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('DBD::AnyData', '0.110', { + 'source_tmpl': 'DBD-AnyData-0.110.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('Text::Format', '0.59', { + 'source_tmpl': 'Text-Format-0.59.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SH/SHLOMIF'], + }), + ('Devel::CheckCompiler', '0.06', { + 'source_tmpl': 'Devel-CheckCompiler-0.06.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SY/SYOHEX'], + }), + ('Log::Handler', '0.87', { + 'source_tmpl': 'Log-Handler-0.87.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BL/BLOONIX'], + }), + ('DBIx::ContextualFetch', '1.03', { + 'source_tmpl': 'DBIx-ContextualFetch-1.03.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/T/TM/TMTM'], + }), + ('HTML::Entities', '3.71', { + 'source_tmpl': 'HTML-Parser-3.71.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/G/GA/GAAS'], + }), + ('Devel::StackTrace', '2.00', { + 'source_tmpl': 'Devel-StackTrace-2.00.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/D/DR/DROLSKY'], + }), + ('Term::ReadKey', '2.33', { + 'source_tmpl': 'TermReadKey-2.33.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/J/JS/JSTOWE'], + }), + ('Set::IntSpan', '1.19', { + 'source_tmpl': 'Set-IntSpan-1.19.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/S/SW/SWMCD'], + }), + ('Moose', '2.1603', { + 'source_tmpl': 'Moose-2.1603.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/E/ET/ETHER'], + }), + ('Algorithm::Dependency', '1.110', { + 'source_tmpl': 'Algorithm-Dependency-1.110.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/A/AD/ADAMK'], + }), + ('Font::TTF', '1.05', { + 'source_tmpl': 'Font-TTF-1.05.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MH/MHOSKEN'], + }), + ('IPC::Run3', '0.048', { + 'source_tmpl': 'IPC-Run3-0.048.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('File::Find::Rule', '0.33', { + 'source_tmpl': 'File-Find-Rule-0.33.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RC/RCLAMP'], + }), + ('SQL::Statement', '1.407', { + 'source_tmpl': 'SQL-Statement-1.407.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RE/REHSACK'], + }), + ('File::Slurp', '9999.19', { + 'source_tmpl': 'File-Slurp-9999.19.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/U/UR/URI'], + }), + ('Package::Stash', '0.37', { + 'source_tmpl': 'Package-Stash-0.37.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/D/DO/DOY'], + }), + ('Data::OptList', '0.109', { + 'source_tmpl': 'Data-OptList-0.109.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('CPANPLUS', '0.9154', { + 'source_tmpl': 'CPANPLUS-0.9154.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], + }), + ('Test::Harness', '3.35', { + 'source_tmpl': 'Test-Harness-3.35.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/L/LE/LEONT'], + }), + ('IO::Tty', '1.12', { + 'source_tmpl': 'IO-Tty-1.12.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/T/TO/TODDR'], + }), + ('Text::Soundex', '3.04', { + 'source_tmpl': 'Text-Soundex-3.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/R/RJ/RJBS'], + }), + ('Lingua::EN::PluralToSingular', '0.14', { + 'source_tmpl': 'Lingua-EN-PluralToSingular-0.14.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/B/BK/BKB'], + }), + ('Want', '0.26', { + 'source_tmpl': 'Want-0.26.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RO/ROBIN'], + }), + ('Cwd::Guard', '0.04', { + 'source_tmpl': 'Cwd-Guard-0.04.tar.gz', + 'source_urls': ['http://cpan.metacpan.org/authors/id/K/KA/KAZEBURO'], + }), + ('Bundle::BioPerl', '2.1.9', { + 'source_tmpl': 'Bundle-BioPerl-2.1.9.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS'], + }), + ('Mail::Util', '2.14', { + 'source_tmpl': 'MailTools-2.14.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MARKOV'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Perl/Perl-5.22.1-intel-2016a-bare.eb b/easybuild/easyconfigs/p/Perl/Perl-5.22.1-intel-2016a-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..2796d0fc7f90e9f036b6a52de8f8cc9e86cf13b2 --- /dev/null +++ b/easybuild/easyconfigs/p/Perl/Perl-5.22.1-intel-2016a-bare.eb @@ -0,0 +1,17 @@ +name = 'Perl' +version = '5.22.1' +versionsuffix = '-bare' + +homepage = 'http://www.perl.org/' +description = """Larry Wall's Practical Extraction and Report Language""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.cpan.org/src/%(version_major)s.0'] +sources = [SOURCELOWER_TAR_GZ] + +# bare, no extensions +exts_list = [] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Pillow/Pillow-2.8.1-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/Pillow/Pillow-2.8.1-foss-2015a-Python-2.7.9.eb index 524dd9ba3d66e30769478b0dd7d5c993f7e2cab5..aededa4507ca45390fe757dd635ade13e436a898 100644 --- a/easybuild/easyconfigs/p/Pillow/Pillow-2.8.1-foss-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/Pillow/Pillow-2.8.1-foss-2015a-Python-2.7.9.eb @@ -7,7 +7,7 @@ homepage = 'http://pillow.readthedocs.org/' description = """Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.""" -toolchain = {'name': 'foss', 'version': '2015a'} +toolchain = {'name': 'foss', 'version': '2015a'} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/p/Pillow/Pillow-2.8.1-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/Pillow/Pillow-2.8.1-intel-2015a-Python-2.7.9.eb index 04c7f0efa3cf824724db3ccf6669ee49e194a57c..07b42e823bee4b44aa941fe9b959c98ffebf6a8f 100644 --- a/easybuild/easyconfigs/p/Pillow/Pillow-2.8.1-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/Pillow/Pillow-2.8.1-intel-2015a-Python-2.7.9.eb @@ -7,7 +7,7 @@ homepage = 'http://pillow.readthedocs.org/' description = """Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.""" -toolchain = {'name': 'intel', 'version': '2015a'} +toolchain = {'name': 'intel', 'version': '2015a'} source_urls = [PYPI_SOURCE] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5a7-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5a7-goolf-1.4.10.eb index 65d0c45c59d1130cd39a00d9e14b219d489fe854..bca12c0034c692c32615cf608fe8627e57d02486 100644 --- a/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5a7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Pindel/Pindel-0.2.5a7-goolf-1.4.10.eb @@ -28,15 +28,15 @@ dependencies = [ ] cmds_map = [('.*', "CPATH=$EBROOTSAMTOOLS/include/bam:$CPATH ./INSTALL $EBROOTSAMTOOLS")] - + files_to_copy = [ (['pindel', 'sam2pindel', 'pindel2vcf', 'bam2pindel.pl', 'Adaptor.pm'], 'bin'), - "demo", - "gmt", - "gmt-web", - "test", - "README.md", - "RELEASE" + "demo", + "gmt", + "gmt-web", + "test", + "README.md", + "RELEASE" ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/p/Platypus/Platypus-0.8.1-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/p/Platypus/Platypus-0.8.1-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..b661d0c21a47a269ef85fd9ddcaf60b895e11d1a --- /dev/null +++ b/easybuild/easyconfigs/p/Platypus/Platypus-0.8.1-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,33 @@ +easyblock = 'PythonPackage' + +name = 'Platypus' +version = '0.8.1' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://www.well.ox.ac.uk/platypus' +description = """Platypus is a tool designed for efficient and accurate variant-detection + in high-throughput sequencing data.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +# download requires registration, see http://www.well.ox.ac.uk/software-download-registration +sources = ['%(name)s_%(version)s.tgz'] + +dependencies = [ + ('Python', '2.7.11'), + ('HTSlib', '1.3'), +] + +unpack_options = '--strip-components=1' +buildininstalldir = True + +options = {'modulename': 'platypusutils'} + +postinstallcmds = ["mkdir %(installdir)s/bin && cd %(installdir)s/bin && ln -s ../Platypus.py"] + +sanity_check_paths = { + 'files': ['Platypus.py'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/PnMPI/PnMPI-1.2.0-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/p/PnMPI/PnMPI-1.2.0-gompi-1.4.12-no-OFED.eb index 3b3f47bdf1613b7764596b5ed549ae5d820485eb..909fa6783b37ef85093457ae3a34603a493e588f 100644 --- a/easybuild/easyconfigs/p/PnMPI/PnMPI-1.2.0-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/p/PnMPI/PnMPI-1.2.0-gompi-1.4.12-no-OFED.eb @@ -23,7 +23,7 @@ sources = ['%(namelower)s-for-gti-%(version)s.tar.gz'] builddependencies = [('CMake', '2.8.10.2')] -configopts = ' -DCMAKE_BUILD_TYPE=Release -DBFD_FOUND=False -DPNMPI_HAVE_BFD=False' +configopts = ' -DCMAKE_BUILD_TYPE=Release -DBFD_FOUND=False -DPNMPI_HAVE_BFD=False' parallel = 1 diff --git a/easybuild/easyconfigs/p/PostgreSQL/PostgreSQL-9.3.5-intel-2014b.eb b/easybuild/easyconfigs/p/PostgreSQL/PostgreSQL-9.3.5-intel-2014b.eb index f0f5501b846be81899908f970ee1dec54dd300a7..815c947eaca508729f927c5c81487b4561ec6363 100644 --- a/easybuild/easyconfigs/p/PostgreSQL/PostgreSQL-9.3.5-intel-2014b.eb +++ b/easybuild/easyconfigs/p/PostgreSQL/PostgreSQL-9.3.5-intel-2014b.eb @@ -27,7 +27,7 @@ dependencies = [ (java, javaver, '', True), ('libreadline', '6.3'), ('zlib', '1.2.8'), -# ('OpenSSL', '1.0.1i'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1i'), # OS dependency should be preferred for security reasons ] builddependencies = [ diff --git a/easybuild/easyconfigs/p/pycairo/pycairo-1.10.0-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/p/PyCairo/PyCairo-1.10.0-intel-2015b-Python-2.7.10.eb similarity index 97% rename from easybuild/easyconfigs/p/pycairo/pycairo-1.10.0-intel-2015b-Python-2.7.10.eb rename to easybuild/easyconfigs/p/PyCairo/PyCairo-1.10.0-intel-2015b-Python-2.7.10.eb index f701cf3d28dc4380f0406fb61d6802dbbf0952b1..246a64686dcbb9cbf44af3aa28009424d391866b 100644 --- a/easybuild/easyconfigs/p/pycairo/pycairo-1.10.0-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/p/PyCairo/PyCairo-1.10.0-intel-2015b-Python-2.7.10.eb @@ -1,6 +1,6 @@ easyblock = 'Waf' -name = 'pycairo' +name = 'PyCairo' version = '1.10.0' homepage = 'http://cairographics.org/pycairo/' diff --git a/easybuild/easyconfigs/p/PyCairo/PyCairo-1.10.0-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/p/PyCairo/PyCairo-1.10.0-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..27c3b183913060540a38d916cc638123a839b252 --- /dev/null +++ b/easybuild/easyconfigs/p/PyCairo/PyCairo-1.10.0-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,35 @@ +easyblock = 'Waf' + +name = 'PyCairo' +version = '1.10.0' + +homepage = 'http://cairographics.org/pycairo/' +description = """Python bindings for the cairo library""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['http://cairographics.org/releases/'] +# py2cairo is the Python 2 compatible release +sources = ['py2cairo-%(version)s.tar.bz2'] + +pyver = '2.7.11' +pyshortver = '.'.join(pyver.split('.')[:2]) +versionsuffix = '-Python-%s' % pyver + +configopts = " --nopyc --nopyo " + +dependencies = [ + ('Python', pyver), + ('cairo', '1.14.6'), +] + +modextrapaths = { + 'PYTHONPATH': ['lib/python%s/site-packages' % pyshortver, 'lib64/python%s/site-packages' % pyshortver], +} + +sanity_check_paths = { + 'files': ['include/pycairo/pycairo.h', 'lib/pkgconfig/pycairo.pc'], + 'dirs': ['lib/python%s/site-packages/cairo' % pyshortver], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/PyFFmpeg/PyFFmpeg-2.1beta-gimkl-2.11.5-Python-2.7.10.eb b/easybuild/easyconfigs/p/PyFFmpeg/PyFFmpeg-2.1beta-gimkl-2.11.5-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..3f9ec175b06862c9d335ff4e514baeb94f68324b --- /dev/null +++ b/easybuild/easyconfigs/p/PyFFmpeg/PyFFmpeg-2.1beta-gimkl-2.11.5-Python-2.7.10.eb @@ -0,0 +1,34 @@ +easyblock = 'PythonPackage' + +name = 'PyFFmpeg' +version = '2.1beta' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/mhaller/pyffmpeg' +description = """Python FFmpeg wrapper""" + +toolchain = {'name': 'gimkl', 'version': '2.11.5'} +toolchainopts = {'usempi': True} + +source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/pyffmpeg/'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'PyFFmpeg-%(version)s_ffmpegpath.patch', + 'PyFFmpeg-%(version)s_Cython-fixes.patch', +] + +dependencies = [ + ('Python', '2.7.10'), + ('Cython', '0.23.4', versionsuffix), + ('FFmpeg', '0.10.16'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +options = {'modulename': '%(namelower)s'} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/PyFFmpeg/PyFFmpeg-2.1beta-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/p/PyFFmpeg/PyFFmpeg-2.1beta-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..f4ffc868166bde8ae216f7b99e474005dacbab99 --- /dev/null +++ b/easybuild/easyconfigs/p/PyFFmpeg/PyFFmpeg-2.1beta-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,33 @@ +easyblock = 'PythonPackage' + +name = 'PyFFmpeg' +version = '2.1beta' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/mhaller/pyffmpeg' +description = """Python FFmpeg wrapper""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'usempi': True} + +source_urls = ['https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/pyffmpeg/'] +sources = [SOURCELOWER_TAR_GZ] + +patches = [ + 'PyFFmpeg-%(version)s_ffmpegpath.patch', + 'PyFFmpeg-%(version)s_Cython-fixes.patch', +] + +dependencies = [ + ('Python', '2.7.11'), + ('FFmpeg', '0.10.16'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +options = {'modulename': '%(namelower)s'} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/PyFFmpeg/PyFFmpeg-2.1beta_Cython-fixes.patch b/easybuild/easyconfigs/p/PyFFmpeg/PyFFmpeg-2.1beta_Cython-fixes.patch new file mode 100644 index 0000000000000000000000000000000000000000..4370508444ed637e71aa37808632fa77d0d31e28 --- /dev/null +++ b/easybuild/easyconfigs/p/PyFFmpeg/PyFFmpeg-2.1beta_Cython-fixes.patch @@ -0,0 +1,201 @@ +fix compilation issues, cfr. https://code.google.com/archive/p/pyffmpeg/issues/44 +author: Kenneth Hoste (HPC-UGent) +--- pyffmpeg-2.1beta/pyffmpeg.pyx.orig 2011-01-12 16:49:19.000000000 +0100 ++++ pyffmpeg-2.1beta/pyffmpeg.pyx 2016-02-17 14:09:02.007382083 +0100 +@@ -183,7 +183,6 @@ + # int height + # int pix_fmt + # int frame_number +-# int hurry_up + # int skip_idct + # int skip_frame + +@@ -220,7 +219,6 @@ + float b_quant_factor + int rc_strategy + int b_frame_strategy +- int hurry_up + int rtp_mode + int rtp_payload_size + int mv_bits +@@ -370,12 +368,12 @@ + int skip_loop_filter + + +- enum CodecType: +- CODEC_TYPE_UNKNOWN = -1 +- CODEC_TYPE_VIDEO = 0 +- CODEC_TYPE_AUDIO = 1 +- CODEC_TYPE_DATA = 2 +- CODEC_TYPE_SUBTITLE = 3 ++ enum AVMediaType: ++ AVMEDIA_TYPE_UNKNOWN = -1 ++ AVMEDIA_TYPE_VIDEO = 0 ++ AVMEDIA_TYPE_AUDIO = 1 ++ AVMEDIA_TYPE_DATA = 2 ++ AVMEDIA_TYPE_SUBTITLE = 3 + + struct AVCodec: + char *name +@@ -620,7 +618,7 @@ + AVInputFormat *av_probe_input_format(AVProbeData *pd, int is_opened) + AVInputFormat *av_probe_input_format2(AVProbeData *pd, int is_opened,int * score) + AVFormatContext * avformat_alloc_context() +- AVOutputFormat *guess_format(char *short_name, char *filename,char *mime_type) ++ AVOutputFormat *av_guess_format(char *short_name, char *filename,char *mime_type) + + cdef __registered + __registered = 0 +@@ -703,6 +701,7 @@ + + + def py_av_register_all(): ++ global __registered + if __registered: + return + __registered = 1 +@@ -761,10 +760,10 @@ + ############################################################################### + ## Some common settings + ############################################################################### +-TS_AUDIOVIDEO={'video1':(CODEC_TYPE_VIDEO, -1, {}), 'audio1':(CODEC_TYPE_AUDIO, -1, {})} +-TS_AUDIO={ 'audio1':(CODEC_TYPE_AUDIO, -1, {})} +-TS_VIDEO={ 'video1':(CODEC_TYPE_VIDEO, -1, {})} +-TS_VIDEO_PIL={ 'video1':(CODEC_TYPE_VIDEO, -1, {'outputmode':OUTPUTMODE_PIL})} ++TS_AUDIOVIDEO={'video1':(AVMEDIA_TYPE_VIDEO, -1, {}), 'audio1':(AVMEDIA_TYPE_AUDIO, -1, {})} ++TS_AUDIO={ 'audio1':(AVMEDIA_TYPE_AUDIO, -1, {})} ++TS_VIDEO={ 'video1':(AVMEDIA_TYPE_VIDEO, -1, {})} ++TS_VIDEO_PIL={ 'video1':(AVMEDIA_TYPE_VIDEO, -1, {'outputmode':OUTPUTMODE_PIL})} + + + +@@ -805,13 +804,13 @@ + # self.prepacket=None + # self.packet=&self.packetbufa + +- def __new__(self): ++ def __cinit__(self): + pass + + def dump(self): + pass + +- def open(self,char *filename, track_selector={'video1':(CODEC_TYPE_VIDEO, -1), 'audio1':(CODEC_TYPE_AUDIO, -1)}): ++ def open(self,char *filename, track_selector={'video1':(AVMEDIA_TYPE_VIDEO, -1), 'audio1':(AVMEDIA_TYPE_AUDIO, -1)}): + pass + + def close(self): +@@ -906,7 +905,6 @@ + skip_frame + skip_idct + skip_loop_filter +- hurry_up + dct_algo + idct_algo + +@@ -916,7 +914,7 @@ + self.observer=None + self.support_truncated=support_truncated + for k in args.keys(): +- if k not in [ "skip_frame", "skip_loop_filter", "skip_idct", "hurry_up", "hurry_mode", "dct_algo", "idct_algo", "check_start" ,"check_end"]: ++ if k not in [ "skip_frame", "skip_loop_filter", "skip_idct", "hurry_mode", "dct_algo", "idct_algo", "check_start" ,"check_end"]: + sys.stderr.write("warning unsupported arguments in stream initialization :"+k+"\n") + if self.Codec == NULL: + raise IOError("Unable to get decoder") +@@ -924,7 +922,6 @@ + self.CodecCtx.flags = self.CodecCtx.flags | CODEC_FLAG_TRUNCATED + avcodec_open(self.CodecCtx, self.Codec) + if args.has_key("hurry_mode"): +- self.CodecCtx.hurry_up=2 + self.CodecCtx.skip_loop_filter=32 + self.CodecCtx.skip_frame=32 + self.CodecCtx.skip_idct=32 +@@ -934,8 +931,6 @@ + self.CodecCtx.skip_idct=args["skip_idct"] + if args.has_key("skip_loop_filter"): + self.CodecCtx.skip_loop_filter=args["skip_loop_filter"] +- if args.has_key("hurry_up"): +- self.CodecCtx.skip_loop_filter=args["hurry_up"] + if args.has_key("dct_algo"): + self.CodecCtx.dct_algo=args["dct_algo"] + if args.has_key("idct_algo"): +@@ -1389,7 +1384,6 @@ + skip_frame + skip_idct + skip_loop_filter +- hurry_up + dct_algo + idct_algo + +@@ -1668,12 +1662,10 @@ + if (b) : + self.CodecCtx.skip_idct = AVDISCARD_BIDIR + self.CodecCtx.skip_frame = AVDISCARD_BIDIR +- self.CodecCtx.hurry_up = 1 + self.hurried_frames = 0 + else: + self.CodecCtx.skip_idct = 0 + self.CodecCtx.skip_frame = 0 +- self.CodecCtx.hurry_up = 0 + + ######################################## + ### +@@ -1832,7 +1824,7 @@ + cdef int with_readahead + cdef unsigned long long int seek_before_security_interval + +- def __new__(self,with_readahead=True,seek_before=4000): ++ def __cinit__(self,with_readahead=True,seek_before=4000): + self.filename = None + self.tracks=[] + self.ctracks=NULL +@@ -1902,7 +1894,7 @@ + + if (mode=="w"): + raise Exception,"Not yet supported sorry" +- self.FormatCtx.oformat = guess_format(NULL, filename_, NULL); ++ self.FormatCtx.oformat = av_guess_format(NULL, filename_, NULL); + if (self.FormatCtx.oformat==NULL): + raise Exception, "Unable to find output format for %s\n" + +@@ -1960,7 +1952,7 @@ + cdef AVFormatContext * oc + oc = avformat_alloc_context() + # Guess file format with file extention +- oc.oformat = guess_format(NULL, filename_, NULL); ++ oc.oformat = av_guess_format(NULL, filename_, NULL); + if (oc.oformat==NULL): + raise Exception, "Unable to find output format for %s\n" + # Alloc priv_data for format +@@ -2038,7 +2030,7 @@ + raise IOError("Unable to find specified Track") + + CodecCtx = self.FormatCtx.streams[trackno].codec +- if (s[0]==CODEC_TYPE_VIDEO): ++ if (s[0]==AVMEDIA_TYPE_VIDEO): + try: + vt=VideoTrack() + except: +@@ -2048,7 +2040,7 @@ + vt.init0(self,trackno, CodecCtx) ## here we are passing cpointers so we do a C call + vt.init(**s[2])## here we do a python call + self.tracks.append(vt) +- elif (s[0]==CODEC_TYPE_AUDIO): ++ elif (s[0]==AVMEDIA_TYPE_AUDIO): + try: + at=AudioTrack() + except: +@@ -2171,11 +2163,11 @@ + ## I don't know why it seems that Windows Cython have problem calling the correct virtual function + ## + ## +- if ct.CodecCtx.codec_type==CODEC_TYPE_VIDEO: ++ if ct.CodecCtx.codec_type==AVMEDIA_TYPE_VIDEO: + processed=True + vt=ct + vt.process_packet(self.packet) +- elif ct.CodecCtx.codec_type==CODEC_TYPE_AUDIO: ++ elif ct.CodecCtx.codec_type==AVMEDIA_TYPE_AUDIO: + processed=True + at=ct + at.process_packet(self.packet) diff --git a/easybuild/easyconfigs/p/PyFFmpeg/PyFFmpeg-2.1beta_ffmpegpath.patch b/easybuild/easyconfigs/p/PyFFmpeg/PyFFmpeg-2.1beta_ffmpegpath.patch new file mode 100644 index 0000000000000000000000000000000000000000..8196e01135b46fbdc7a36d90c4915d74100903ba --- /dev/null +++ b/easybuild/easyconfigs/p/PyFFmpeg/PyFFmpeg-2.1beta_ffmpegpath.patch @@ -0,0 +1,21 @@ +specify FFmpeg install location in PyFFmpeg's setup.py +author: Kenneth Hoste (HPC-UGent) +--- pyffmpeg-2.1beta/setup.py.orig 2011-01-12 16:46:15.000000000 +0100 ++++ pyffmpeg-2.1beta/setup.py 2016-02-17 10:52:57.454775826 +0100 +@@ -33,7 +33,7 @@ + + else: + ffmpegpath = '/opt/ffmpeg' +- for x in [ os.environ["HOME"]+"build/ffmpeg", '/usr/local/ffmpeg', '/opt/ffmpeg' ]: ++ for x in [os.environ['EBROOTFFMPEG'], os.environ["HOME"]+"build/ffmpeg", '/usr/local/ffmpeg', '/opt/ffmpeg' ]: + try: + os.stat(x) + ffmpegpath = x +@@ -69,6 +69,7 @@ + map(lambda x: x not in result and result.append(x), deps) + return result + ++print "ffmpegpath: %s" % ffmpegpath + + libs = [ 'avformat', 'avcodec', 'avutil', 'swscale' ] + incdir = [ path_join(ffmpegpath, 'include'), "/usr/include/ffmpeg" , "./include" ] diff --git a/easybuild/easyconfigs/p/PyGObject/PyGObject-2.28.6-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/p/PyGObject/PyGObject-2.28.6-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..3291d71bff37861840c859cdc16b684371d15316 --- /dev/null +++ b/easybuild/easyconfigs/p/PyGObject/PyGObject-2.28.6-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,40 @@ +easyblock = 'ConfigureMake' + +name = 'PyGObject' +version = '2.28.6' + +homepage = 'http://www.pygtk.org/' +description = """Python Bindings for GLib/GObject/GIO/GTK+""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [FTPGNOME_SOURCE] +sources = [SOURCELOWER_TAR_XZ] + +patches = ['PyGObject-%(version)s_enum-types.patch'] + +pyver = '2.7.11' +pyshortver = '.'.join(pyver.split('.')[:2]) +versionsuffix = '-Python-%s' % pyver + +glibver = '2.47.5' +dependencies = [ + ('Python', pyver), + ('GLib', glibver), + ('GObject-Introspection', '1.47.1'), + ('PyCairo', '1.10.0', versionsuffix), +] + +configopts = "--disable-introspection" + +modextrapaths = { + 'PYTHONPATH': ['lib/python%s/site-packages' % pyshortver, 'lib64/python%s/site-packages' % pyshortver], +} + +sanity_check_paths = { + 'files': ['include/pygtk-%(version_major)s.0/pyglib.h', 'include/pygtk-%(version_major)s.0/pygobject.h', + 'lib/libpyglib-%(version_major)s.0-python.so'], + 'dirs': ['bin', 'lib/python%s/site-packages/' % pyshortver], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/PyGObject/PyGObject-2.28.6_enum-types.patch b/easybuild/easyconfigs/p/PyGObject/PyGObject-2.28.6_enum-types.patch new file mode 100644 index 0000000000000000000000000000000000000000..420f56b036cab4cda8fcd7dd8d8c18b7e963e62a --- /dev/null +++ b/easybuild/easyconfigs/p/PyGObject/PyGObject-2.28.6_enum-types.patch @@ -0,0 +1,50 @@ +From 42d01f060c5d764baa881d13c103d68897163a49 Mon Sep 17 00:00:00 2001 +From: Ryan Lortie +Date: Mon, 12 Mar 2012 16:44:14 -0400 +Subject: gio-types.defs: change some enums to flags + +These flags types were originally incorrectly handled in glib as being +enums. That bug was fixed, but they're still enums here, leading to +warnings about the mismatch. + +Change them to flags. + +https://bugzilla.gnome.org/show_bug.cgi?id=668522 +--- + gio/gio-types.defs | 6 +++--- + 1 file changed, 3 insertions(+), 3 deletions(-) + +diff --git a/gio/gio-types.defs b/gio/gio-types.defs +index 331e0bc..7eee5c8 100644 +--- a/gio/gio-types.defs ++++ b/gio/gio-types.defs +@@ -526,7 +526,7 @@ + ) + ) + +-(define-enum MountMountFlags ++(define-flags MountMountFlags + (in-module "gio") + (c-name "GMountMountFlags") + (gtype-id "G_TYPE_MOUNT_MOUNT_FLAGS") +@@ -545,7 +545,7 @@ + ) + ) + +-(define-enum DriveStartFlags ++(define-flags DriveStartFlags + (in-module "gio") + (c-name "GDriveStartFlags") + (gtype-id "G_TYPE_DRIVE_START_FLAGS") +@@ -770,7 +770,7 @@ + ) + ) + +-(define-enum SocketMsgFlags ++(define-flags SocketMsgFlags + (in-module "gio") + (c-name "GSocketMsgFlags") + (gtype-id "G_TYPE_SOCKET_MSG_FLAGS") +-- +cgit v0.11.2 + diff --git a/easybuild/easyconfigs/p/PyGTK/PyGTK-2.24.0-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/p/PyGTK/PyGTK-2.24.0-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..d470f598faf1d90014404f13b273d3259a7ea3e3 --- /dev/null +++ b/easybuild/easyconfigs/p/PyGTK/PyGTK-2.24.0-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,50 @@ +easyblock = 'ConfigureMake' + +name = 'PyGTK' +version = '2.24.0' + +homepage = 'http://www.pygtk.org/' +description = """PyGTK lets you to easily create programs with a graphical user interface + using the Python programming language.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCELOWER_TAR_BZ2] + +pyver = '2.7.11' +pyshortver = '.'.join(pyver.split('.')[:2]) +versionsuffix = '-Python-%s' % pyver + +glibver = '2.47.5' +dependencies = [ + ('Python', pyver), + ('GLib', glibver), + ('PyGObject', '2.28.6', versionsuffix), + ('GTK+', '2.24.28'), + ('ATK', '2.18.0'), + ('PyCairo', '1.10.0', versionsuffix), +] + +postinstallcmds = [ + "sed -i s#'codegendir=${datadir}'#codegendir=$EBROOTPYGOBJECT/share# %(installdir)s/lib/pkgconfig/pygtk-2.0.pc", + "sed -i s#'exec_prefix=${prefix}'#exec_prefix=$EBROOTPYGOBJECT# %(installdir)s/bin/pygtk-codegen-2.0", +] + +modextrapaths = { + 'PYTHONPATH': [ + 'lib/python%s/site-packages' % pyshortver, + 'lib64/python%s/site-packages' % pyshortver, + 'lib/python%s/site-packages/gtk-%%(version_major)s.0' % pyshortver, + 'lib64/python%s/site-packages/gtk-%%(version_major)s.0' % pyshortver, + ], +} + +sanity_check_paths = { + 'files': ['lib/pkgconfig/pygtk-%(version_major)s.0.pc'], + 'dirs': ['lib/pygtk'], +} + +sanity_check_commands = [('python', "-c 'import gtk'")] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb index ef867422c58298b14a4b78701b964c17bd16f0dc..51aeabb7ca96d2743c6cc615a8acba65086fdb72 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-goolf-1.5.14-Python-2.7.9.eb @@ -7,7 +7,7 @@ name = 'PyQt' version = '4.11.3' homepage = 'http://www.riverbankcomputing.co.uk/software/pyqt' -description = """PyQt is a set of Python v2 and v3 bindings for Digia's Qt application framework.""" +description = """PyQt is a set of Python v2 and v3 bindings for Digia's Qt application framework.""" toolchain = {'name': 'goolf', 'version': '1.5.14'} diff --git a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-intel-2015a-Python-2.7.9.eb index 48c5bb750a0f6499a905e9d2f60d82fa2f44337f..328b12d5a91891a90cd324e86b820ef0a1008611 100644 --- a/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/p/PyQt/PyQt-4.11.3-intel-2015a-Python-2.7.9.eb @@ -7,7 +7,7 @@ name = 'PyQt' version = '4.11.3' homepage = 'http://www.riverbankcomputing.co.uk/software/pyqt' -description = """PyQt is a set of Python v2 and v3 bindings for Digia's Qt application framework.""" +description = """PyQt is a set of Python v2 and v3 bindings for Digia's Qt application framework.""" toolchain = {'name': 'intel', 'version': '2015a'} diff --git a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.10-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.10-goolf-1.4.10-Python-2.7.3.eb index d2c2d3137f63d5f3b09761d6fbed4cc0b7790838..96929205464c956176b3f0a2a0a6737e77c810ab 100644 --- a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.10-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.10-goolf-1.4.10-Python-2.7.3.eb @@ -30,4 +30,3 @@ sanity_check_paths = { } moduleclass = 'lib' - diff --git a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.10-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.10-ictce-5.3.0-Python-2.7.3.eb index d3c883a5e6d7f03958a5d3d79eef1ffaaaa376ba..0116c1297c1e9a8e85e5e38c99e64f5ad769633b 100644 --- a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.10-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.10-ictce-5.3.0-Python-2.7.3.eb @@ -30,4 +30,3 @@ sanity_check_paths = { } moduleclass = 'lib' - diff --git a/easybuild/easyconfigs/p/PyYAML/PyYAML-3.11-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.11-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..b47675367824657c2fa40fe838c5382874bc0993 --- /dev/null +++ b/easybuild/easyconfigs/p/PyYAML/PyYAML-3.11-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,31 @@ +easyblock = 'PythonPackage' + +name = 'PyYAML' +version = '3.11' + +homepage = "https://pypi.python.org/pypi/PyYAML/" +description = """PyYAML is a YAML parser and emitter for the Python programming language.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +pyver = '2.7.11' +pyshortver = '.'.join(pyver.split('.')[:2]) + +versionsuffix = '-Python-%s' % pyver + +dependencies = [ + ('Python', pyver), + ('libyaml', '0.1.6'), +] + +options = {'modulename': 'yaml'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/yaml' % pyshortver], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-15.1.0-intel-2015b-Python-2.7.10-zmq4.eb b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-15.1.0-intel-2015b-Python-2.7.10-zmq4.eb new file mode 100644 index 0000000000000000000000000000000000000000..34ae1ffa29c56b7e9beab024ec22ba9db161c6b3 --- /dev/null +++ b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-15.1.0-intel-2015b-Python-2.7.10-zmq4.eb @@ -0,0 +1,33 @@ +easyblock = 'PythonPackage' + +name = 'PyZMQ' +version = '15.1.0' + +homepage = 'http://www.zeromq.org/bindings:python' +description = """Python bindings for ZeroMQ""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pythonversion = '2.7.10' +pyshortver = '.'.join(pythonversion.split('.')[:2]) +zmqversion = '4.1.4' + +versionsuffix = '-%s-%s-%s' % (python, pythonversion, 'zmq%s' % zmqversion.split('.')[0]) + +dependencies = [ + (python, pythonversion), + ('ZeroMQ', zmqversion), +] + +options = {'modulename': 'zmq'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/zmq' % pyshortver], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/PyZMQ/PyZMQ-15.2.0-foss-2015a-Python-2.7.11-zmq4.eb b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-15.2.0-foss-2015a-Python-2.7.11-zmq4.eb new file mode 100644 index 0000000000000000000000000000000000000000..b6f32ee0fc6ea4d7e71f8af76cbf9b533c80abd0 --- /dev/null +++ b/easybuild/easyconfigs/p/PyZMQ/PyZMQ-15.2.0-foss-2015a-Python-2.7.11-zmq4.eb @@ -0,0 +1,33 @@ +easyblock = 'PythonPackage' + +name = 'PyZMQ' +version = '15.2.0' + +homepage = 'http://www.zeromq.org/bindings:python' +description = """Python bindings for ZeroMQ""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = [PYPI_LOWER_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pythonversion = '2.7.11' +pyshortver = '.'.join(pythonversion.split('.')[:2]) +zmqversion = '4.1.4' + +versionsuffix = '-%s-%s-%s' % (python, pythonversion, 'zmq%s' % zmqversion.split('.')[0]) + +dependencies = [ + (python, pythonversion), + ('ZeroMQ', zmqversion), +] + +options = {'modulename': 'zmq'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/zmq' % pyshortver], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/Pyke/Pyke-1.1.1-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/p/Pyke/Pyke-1.1.1-goolf-1.4.10-Python-2.7.3.eb index 3d8ae78e2cbe8549091c1c249d659814ca4e4635..fd5dce2efb6d58bd408d46d62c0c54bd9a20c76f 100644 --- a/easybuild/easyconfigs/p/Pyke/Pyke-1.1.1-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/Pyke/Pyke-1.1.1-goolf-1.4.10-Python-2.7.3.eb @@ -19,9 +19,9 @@ pyver = '2.7.3' versionsuffix = "-%s-%s" % (python, pyver) dependencies = [ - (python, pyver), - ('numpy','1.6.2', versionsuffix), - ('scipy', '0.11.0', versionsuffix), + (python, pyver), + ('numpy', '1.6.2', versionsuffix), + ('scipy', '0.11.0', versionsuffix), ] pyshortver = '.'.join(pyver.split('.')[:2]) diff --git a/easybuild/easyconfigs/p/Python/Python-2.5.6-goalf-1.1.0-no-OFED-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.5.6-goalf-1.1.0-no-OFED-bare.eb index 43ff3feba7790c36001122a64fc7d70826fec35f..6a564b9945e058c9007553f2c7c29083d994c50e 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.5.6-goalf-1.1.0-no-OFED-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.5.6-goalf-1.1.0-no-OFED-bare.eb @@ -18,7 +18,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.5.6-gompi-1.4.12-no-OFED-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.5.6-gompi-1.4.12-no-OFED-bare.eb index f825fd87bd2b9a40df2c89c63725d9351cc179ac..031662cad87485185258a2da7127ce9d80c9aecd 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.5.6-gompi-1.4.12-no-OFED-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.5.6-gompi-1.4.12-no-OFED-bare.eb @@ -18,7 +18,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.5.6-goolf-1.4.10-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.5.6-goolf-1.4.10-bare.eb index 18d0d4a8df4ba5018da9e938ead4ad9836e072fb..e815cc69b5fac246ff483cb8ff33cc5c6798bcee 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.5.6-goolf-1.4.10-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.5.6-goolf-1.4.10-bare.eb @@ -18,7 +18,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-4.0.6-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-4.0.6-bare.eb index 23ddabe854a26e4f7d5889e51b683eb310c2161d..d698199a1268535f656fe9fcb0626cef15d3a6d2 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-4.0.6-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-4.0.6-bare.eb @@ -21,7 +21,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-4.1.13-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-4.1.13-bare.eb index f747214b5c04de81ef7d934c297ae4e88c91fd55..dd9d71c15a91c383c1b34a3d7248b4c1000aa6c3 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-4.1.13-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-4.1.13-bare.eb @@ -21,7 +21,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.2.0-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.2.0-bare.eb index 0228eae5bec85243ecadf62db0050da407306ff8..809068de303a54513a010d973a08f6d7edcf7a51 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.2.0-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.2.0-bare.eb @@ -18,7 +18,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.3.0-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.3.0-bare.eb index fc44c37e78ed1f71580f531eaf88776d834d9af1..c781bfe8b74bc4c9dceb572c6481f7b6c11c95e7 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.3.0-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.5.6-ictce-5.3.0-bare.eb @@ -18,7 +18,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.10-GCC-4.9.3-2.25-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.10-GCC-4.9.3-2.25-bare.eb new file mode 100644 index 0000000000000000000000000000000000000000..c19c8970457265734e48c582d48254519bd9c0ab --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.10-GCC-4.9.3-2.25-bare.eb @@ -0,0 +1,31 @@ +name = 'Python' +version = '2.7.10' +versionsuffix = '-bare' + +homepage = 'http://python.org/' +description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." + +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3', '', ('GCCcore', '4.9.3')), + ('ncurses', '6.0', '', ('GCCcore', '4.9.3')), + ('SQLite', '3.8.10.2'), + ('Tk', '8.6.4', '-no-X11'), + # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev')] + +# bare installation: no extensions included +exts_list = [] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.10-GNU-4.9.3-2.25-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.10-GNU-4.9.3-2.25-bare.eb index 6ecda7651186f7725ec29354b28582725378b5d8..094f5e83b06bb0f33397874d5ed0a5ad815fc64d 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.10-GNU-4.9.3-2.25-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.10-GNU-4.9.3-2.25-bare.eb @@ -19,8 +19,8 @@ dependencies = [ ('ncurses', '5.9'), ('SQLite', '3.8.10.2'), ('Tk', '8.6.4', '-no-X11'), -# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.10-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.10-foss-2015a.eb index 8e4cfabe9d4b2e41d247f5a137f6a22eda9f154d..2110e24871ad60fa20c219404a6e3267868524df 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.10-foss-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.10-foss-2015a.eb @@ -23,8 +23,8 @@ dependencies = [ ('SQLite', '3.8.10.2'), ('Tk', '8.6.4', '-no-X11'), ('GMP', '6.0.0a', '', ('GCC', '4.9.2')), # required for pycrypto -# ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] @@ -43,9 +43,7 @@ exts_list = [ }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': [ - 'numpy-1.8.0-mkl.patch', # % numpyversion, - ], + 'patches': ['numpy-1.8.0-mkl.patch'], }), ('scipy', scipyversion, { 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.10-foss-2015b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.10-foss-2015b.eb index 45878617c62869a77b5253ce14fd90b4bc19c777..76db705ebd43c5cb0af06dbf7336ff68a6cd2fad 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.10-foss-2015b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.10-foss-2015b.eb @@ -23,8 +23,8 @@ dependencies = [ ('SQLite', '3.8.10.2'), ('Tk', '8.6.4', '-no-X11'), ('GMP', '6.0.0a', '', ('GNU', '4.9.3-2.25')), # required for pycrypto -# ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] @@ -43,9 +43,7 @@ exts_list = [ }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': [ - 'numpy-1.8.0-mkl.patch', # % numpyversion, - ], + 'patches': ['numpy-1.8.0-mkl.patch'], }), ('scipy', scipyversion, { 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.10-gimkl-2.11.5.eb b/easybuild/easyconfigs/p/Python/Python-2.7.10-gimkl-2.11.5.eb index 4ae2c2b5e69a19deadb972af3a084fa8b1abe176..a5549be2988dac0021bea2cddf1a5771f2aaac77 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.10-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.10-gimkl-2.11.5.eb @@ -22,8 +22,8 @@ dependencies = [ ('ncurses', '5.9'), ('SQLite', '3.8.10.2'), ('Tk', '8.6.4', '-no-X11'), -# ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] @@ -42,9 +42,7 @@ exts_list = [ }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': [ - 'numpy-1.8.0-mkl.patch', # % numpyversion, - ], + 'patches': ['numpy-1.8.0-mkl.patch'], }), ('scipy', scipyversion, { 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.10-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.10-goolf-1.4.10.eb index 66bb207792660d2f60d0f0ec3332b240b72fa943..1156ffc2af46661292bc90d9725cd9ae06ccf773 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.10-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.10-goolf-1.4.10.eb @@ -23,8 +23,8 @@ dependencies = [ ('SQLite', '3.8.10.2'), ('Tk', '8.6.4', '-no-X11'), ('GMP', '6.0.0a', '', ('GCC', '4.7.2')), # required for pycrypto -# ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] @@ -43,9 +43,7 @@ exts_list = [ }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': [ - 'numpy-1.8.0-mkl.patch', # % numpyversion, - ], + 'patches': ['numpy-1.8.0-mkl.patch'], }), ('scipy', scipyversion, { 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.10-goolf-1.7.20.eb b/easybuild/easyconfigs/p/Python/Python-2.7.10-goolf-1.7.20.eb index e5f6c7aacced28f0598bd5a0b8ad90eff0dd7f3b..56b2274143f301040e8858e71cff60578c8af7b2 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.10-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.10-goolf-1.7.20.eb @@ -23,8 +23,8 @@ dependencies = [ ('SQLite', '3.8.10.2'), ('Tk', '8.6.4', '-no-X11'), ('GMP', '6.0.0a', '', ('GCC', '4.8.4')), # required for pycrypto -# ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] @@ -43,9 +43,7 @@ exts_list = [ }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': [ - 'numpy-1.8.0-mkl.patch', # % numpyversion, - ], + 'patches': ['numpy-1.8.0-mkl.patch'], }), ('scipy', scipyversion, { 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.10-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.10-intel-2015a.eb index f5c2309ea848d322c318295c93ffcb02fb1ccccd..2661d5c96a779fadeb6fd65af456eaf45aa0aac1 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.10-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.10-intel-2015a.eb @@ -23,8 +23,8 @@ dependencies = [ ('SQLite', '3.8.10.2'), ('Tk', '8.6.4', '-no-X11'), ('GMP', '6.0.0a', '', ('GCC', '4.9.2')), # required for pycrypto -# ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] @@ -43,9 +43,7 @@ exts_list = [ }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': [ - 'numpy-1.8.0-mkl.patch', # % numpyversion, - ], + 'patches': ['numpy-1.8.0-mkl.patch'], }), ('scipy', scipyversion, { 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.10-intel-2015b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.10-intel-2015b.eb index a5115dc2be096bf024fe6ee931c6096c2baca5d2..94c61afabcb5d86a3a178d1a125564ec96ec188f 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.10-intel-2015b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.10-intel-2015b.eb @@ -22,8 +22,8 @@ dependencies = [ ('ncurses', '5.9'), ('SQLite', '3.8.10.2'), ('Tk', '8.6.4', '-no-X11'), -# ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] @@ -42,9 +42,7 @@ exts_list = [ }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': [ - 'numpy-1.8.0-mkl.patch', # % numpyversion, - ], + 'patches': ['numpy-1.8.0-mkl.patch'], }), ('scipy', scipyversion, { 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.11-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.11-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..34c45f4ac7b1e045cb9b75386c99a1aafad36b44 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.11-foss-2015a.eb @@ -0,0 +1,131 @@ +name = 'Python' +version = '2.7.11' + +homepage = 'http://python.org/' +description = """Python is a programming language that lets you work more quickly and integrate your systems + more effectively.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.10.1' +scipyversion = '0.16.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('SQLite', '3.10.0'), + ('Tk', '8.6.4', '-no-X11'), + ('GMP', '6.1.0'), # required for pycrypto + # ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# order is important! +# package versions updated May 28th 2015 +exts_list = [ + ('setuptools', '18.7.1', { + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '7.1.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.7', { + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': ['numpy-1.8.0-mkl.patch'], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], + }), + ('pbr', '1.8.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + }), + ('lockfile', '0.12.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.23.4', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.10.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.2', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.2', { + 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '4.0.4', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.1.0', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.13', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.16.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.6', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.18', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), + ('funcsigs', '0.4', { + 'source_urls': ['https://pypi.python.org/packages/source/f/funcsigs'], + }), + ('mock', '1.3.0', { + 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], + }), + ('pytz', '2015.7', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], + }), + ('pandas', '0.17.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], + }), + ('enum34', '1.1.2', { + 'modulename': 'enum', + 'source_urls': ['https://pypi.python.org/packages/source/e/enum34'], + }), + ('bitstring', '3.1.3', { + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/b/bitstring'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.11-foss-2016a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.11-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..deaca9e5fd72a80d160e69ddae0c71e70b8a8da6 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.11-foss-2016a.eb @@ -0,0 +1,131 @@ +name = 'Python' +version = '2.7.11' + +homepage = 'http://python.org/' +description = """Python is a programming language that lets you work more quickly and integrate your systems + more effectively.""" + +toolchain = {'name': 'foss', 'version': '2016a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.10.1' +scipyversion = '0.16.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '6.0'), + ('SQLite', '3.9.2'), + ('Tk', '8.6.4', '-no-X11'), + ('GMP', '6.1.0'), + # ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# order is important! +# package versions updated May 28th 2015 +exts_list = [ + ('setuptools', '18.7.1', { + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '7.1.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.7', { + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': ['numpy-1.8.0-mkl.patch'], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], + }), + ('pbr', '1.8.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + }), + ('lockfile', '0.12.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.23.4', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.10.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.2', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.2', { + 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '4.0.4', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.1.0', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.13', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.16.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.6', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.18', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), + ('funcsigs', '0.4', { + 'source_urls': ['https://pypi.python.org/packages/source/f/funcsigs'], + }), + ('mock', '1.3.0', { + 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], + }), + ('pytz', '2015.7', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], + }), + ('pandas', '0.17.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], + }), + ('enum34', '1.1.2', { + 'modulename': 'enum', + 'source_urls': ['https://pypi.python.org/packages/source/e/enum34'], + }), + ('bitstring', '3.1.3', { + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/b/bitstring'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.11-intel-2015b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.11-intel-2015b.eb index ac89976c5e20a3772221ddd74a841456b753f80a..74d0c82b50b4903ee0d9355c23135601db0fad8e 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.11-intel-2015b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.11-intel-2015b.eb @@ -23,8 +23,8 @@ dependencies = [ ('SQLite', '3.9.2'), ('Tk', '8.6.4', '-no-X11'), ('GMP', '6.1.0'), -# ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] @@ -44,7 +44,8 @@ exts_list = [ ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], 'patches': [ - 'numpy-1.8.0-mkl.patch', # % numpyversion, + 'numpy-1.8.0-mkl.patch', + 'numpy-%s-sse42.patch' % numpyversion, ], }), ('scipy', scipyversion, { @@ -120,6 +121,14 @@ exts_list = [ ('pandas', '0.17.1', { 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], }), + ('enum34', '1.1.2', { + 'modulename': 'enum', + 'source_urls': ['https://pypi.python.org/packages/source/e/enum34'], + }), + ('bitstring', '3.1.3', { + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/b/bitstring'], + }), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.11-intel-2016a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.11-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..6819a492c96b538df8b0da5f7441511bf2d1e143 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/Python-2.7.11-intel-2016a.eb @@ -0,0 +1,134 @@ +name = 'Python' +version = '2.7.11' + +homepage = 'http://python.org/' +description = """Python is a programming language that lets you work more quickly and integrate your systems + more effectively.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +numpyversion = '1.10.1' +scipyversion = '0.16.1' + +source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] +sources = [SOURCE_TGZ] + +# python needs bzip2 to build the bz2 package +dependencies = [ + ('bzip2', '1.0.6'), + ('zlib', '1.2.8'), + ('libreadline', '6.3'), + ('ncurses', '6.0'), + ('SQLite', '3.9.2'), + ('Tk', '8.6.4', '-no-X11'), + ('GMP', '6.1.0'), + # ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons +] + +osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] + +# order is important! +# package versions updated May 28th 2015 +exts_list = [ + ('setuptools', '18.7.1', { + 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], + }), + ('pip', '7.1.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], + }), + ('nose', '1.3.7', { + 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], + }), + ('numpy', numpyversion, { + 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'patches': [ + 'numpy-1.8.0-mkl.patch', + 'numpy-%s-sse42.patch' % numpyversion, + ], + }), + ('scipy', scipyversion, { + 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + }), + ('blist', '1.3.6', { + 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], + }), + ('mpi4py', '1.3.1', { + 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], + }), + ('paycheck', '1.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], + }), + ('argparse', '1.4.0', { + 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], + }), + ('pbr', '1.8.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], + }), + ('lockfile', '0.12.2', { + 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], + }), + ('Cython', '0.23.4', { + 'source_urls': ['http://www.cython.org/release/'], + }), + ('six', '1.10.0', { + 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], + }), + ('dateutil', '2.4.2', { + 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], + }), + ('deap', '1.0.2', { + 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', + 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + }), + ('decorator', '4.0.4', { + 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], + }), + ('arff', '2.1.0', { + 'source_tmpl': 'liac-%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], + }), + ('pycrypto', '2.6.1', { + 'modulename': 'Crypto', + 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], + }), + ('ecdsa', '0.13', { + 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], + }), + ('paramiko', '1.16.0', { + 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], + }), + ('pyparsing', '2.0.6', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], + }), + ('netifaces', '0.10.4', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], + }), + ('netaddr', '0.7.18', { + 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], + }), + ('funcsigs', '0.4', { + 'source_urls': ['https://pypi.python.org/packages/source/f/funcsigs'], + }), + ('mock', '1.3.0', { + 'source_urls': ['https://pypi.python.org/packages/source/m/mock'], + }), + ('pytz', '2015.7', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pytz'], + }), + ('pandas', '0.17.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pandas'], + }), + ('enum34', '1.1.2', { + 'modulename': 'enum', + 'source_urls': ['https://pypi.python.org/packages/source/e/enum34'], + }), + ('bitstring', '3.1.3', { + 'source_tmpl': '%(name)s-%(version)s.zip', + 'source_urls': ['https://pypi.python.org/packages/source/b/bitstring'], + }), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb index b447f3f5c56fd2e47691d2c592643a6c91b818fd..458773a19ca69818f02788b8168b4ff2f5a57a47 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmpolf-1.1.6.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9-20130406'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb index 3b9b9b0071c316fa3fe06218d68bf14614ce8525..8847eb716ad958585a1462cfcb3ec0db21ebebe6 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.1.12rc1.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9-20130406'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb index e9411a98a07021ce56ce98dd659466ea3fabd664..8721ba5f0a86b47f2fdf5f236aff04191d94a232 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgmvolf-1.2.7.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9-20130406'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb index 9d81cee86be481950aecd7b7cd7177b15061ad19..feaf2e76ec9ca818190b34aaecaaec25d2218eef 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-cgoolf-1.1.7.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9-20130406'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb index b7dfb64df9b022f6ee658b86b4a939eb89230cd7..6bbc4316af7a2b38bf3d93880231785261eeffac 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmpolf-1.4.8.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb index 5eb4c88938f924fa0a64e6ef4a9473c64461dc4a..b6713093818a55f660b79e0b7873fd7df3022900 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9-20130406'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb index 878951cc6e476ff20a71f61cae0f90c4c87951dc..383cedbc17d57cd3bcaa0b3a4cc203339e136edd 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-gmvolf-1.7.12rc1.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9-20130406'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb index 957d719fbd04d9e4a5f8b3b4013515b0f7e2330e..ffaa43d1efacaaeae03cb1dedd1577162ee8e491 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goalf-1.1.0-no-OFED.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb index 49da1ce96f947abec5e8960eb4c7843f940bb27e..b20ffd67fb5a575df71ea292f4311d513348378b 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.4.10.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb index ff029a2234b253e799e285d736c993318aab0490..e087117a23517b8593e77efc650e6d5ab0885944 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-goolf-1.5.14.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb index 2ef8f9fc886b0c840beb8606ddd784e6dc44c807..04f049367bdf4021f4ec2af45a36eff04b7ec65f 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.0.6.eb @@ -21,7 +21,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb index b5075a6a9a6b213bb75c831b9e13cc8944b748b9..f3c7ccd43d50161b87fd57ee4b714764222ddc6c 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-4.1.13.eb @@ -21,7 +21,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb index e1bc68f6d19e46a49866fb09dbcefbdf7cd67a93..65a7050c90012aff70fd707e967d49c12fdf221f 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.2.0.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb index 1f6678ca7318f61796fe2f8a1f41f82f6c4c34b9..caf683b0c800a39ac4c46a2ed461893496c59dfa 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-ictce-5.3.0.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb index bcc80770f8f66f12972c6de62e95d72a7e4f6db6..a68ef18929ba692311f25818eb3b4ee67222dba0 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-intel-2015a.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb index 262801c6c11f6379519725f54257f4cd766edc65..b36520e7e8afa0caf010275b25d8ff45e39b3f9c 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-iomkl-4.6.13.eb @@ -21,7 +21,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb b/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb index 7713f868794252a35e8ed9367d982ca37a95195f..3806ea6dd78b1b3109b836f1bb8a9c3e28317f9a 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.3-iqacml-3.7.3.eb @@ -22,7 +22,7 @@ dependencies = [ ('libreadline', '6.2'), ('ncurses', '5.9'), ('CBLAS', '20110120'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb index 0acac864f5d5fbbd256bc084da5ef05aeac5eecd..e8290ac41a316a88efeea8c17847b1901f087e3c 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-goalf-1.5.12-no-OFED.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb index b8e12d524c621f9a7c70eeb390ce3a616a008923..ed2a7a57302cfb0710fc5dc8001746f247c845f5 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-goolf-1.4.10.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb index 9fda7777e647ec648efc6a1847c7c6b49aeec6ee..45b1ca6a64852bde6f903be6922666582a7f6781 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-4.1.13.eb @@ -22,7 +22,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb index 6f7edf431ee89ec321ee2d9fe7e68be3451ffc67..33dce6f6ca70c4d163a55494fbf6981104a7e7e4 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.3.0.eb @@ -22,7 +22,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb index 3c2a47e51e8e3f9beb52133219152d1cf1e89fad..0a01b973a0d04f9d8e749f177468080d522ea9de 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-ictce-5.5.0.eb @@ -22,7 +22,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb b/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb index c8797b36e9be938d5a2c3dd5973165470445b453..f5d6db6b40e4e6eb5965e35ca940e59d79e76e00 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.5-iqacml-3.7.3.eb @@ -23,7 +23,7 @@ dependencies = [ ('libreadline', '6.2'), ('ncurses', '5.9'), ('CBLAS', '20110120'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb index de11eaf35665adcb3e69194ac8576d31c5301c91..bccfcbf0c220159d4884b052b8db0902e5103c5c 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-goolf-1.4.10.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb index b8f2f71c1298a2e06a92f29c7f861226b4c8ffce..146417325f9f850b95a15e73de92e783b47a9cb3 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-4.1.13.eb @@ -22,7 +22,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb index be1053a62d683f0385756f0b3478ca21b2bbf9a6..a51d51c98601d8e4aa4dde8345eadbd9f37cc522 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.6-ictce-5.5.0.eb @@ -22,7 +22,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb index caf05b2cc7ffaef59b1e10abb4068850df96ce40..16590efbbd1082d005bcc7366f17bb28f2fb5612 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-foss-2014b.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb index 5c19bcd953243787c7508def9cf5a974e6dca284..c8491023d824a0fcc9f8df18b857d9996fc9d82a 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-goolf-1.5.14.eb @@ -22,7 +22,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb index f1ec579fbec9c3a7b1921495625b9a9fe82a8768..bcf88e98c962784d043c09e37df6aabfb2cadcfb 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-ictce-7.1.2.eb @@ -25,7 +25,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014.06.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014.06.eb index b6208992739be2617df8f408dead087b982bb260..dfe5979c7c5be91e27fee21819b96e4ba29932b4 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014.06.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014.06.eb @@ -22,7 +22,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb index 1ae3ec0c5f68a8a57c9dece5f47ad8fbc7a256db..54121e1a6fb6163021e9322e44f936839b68a2fa 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2014b.eb @@ -22,7 +22,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb index 60923e701c5052fa8a481553de1671add9450089..012b08cef627b9559ee0ebc3552e7fc9b8ebc540 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.8-intel-2015a.eb @@ -22,8 +22,8 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1g'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] # order is important! @@ -40,9 +40,7 @@ exts_list = [ }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': [ - 'numpy-1.8.0-mkl.patch', # % numpyversion, - ], + 'patches': ['numpy-1.8.0-mkl.patch'], }), ('scipy', scipyversion, { 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-2015.06-XC-bare.eb similarity index 95% rename from easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25-bare.eb rename to easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-2015.06-XC-bare.eb index 1e9572eb837c8293f7b1806493415e91e16564e7..ae58dbb4981ba8f7e3fa4a24d912746158309c3e 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-2015.06-XC-bare.eb @@ -5,7 +5,7 @@ versionsuffix = '-bare' homepage = 'http://python.org/' description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} toolchainopts = {'pic': True, 'opt': True} source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-2015.06-XC.eb similarity index 98% rename from easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29.eb rename to easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-2015.06-XC.eb index 2e085966c758de3a5210a92427e332cdcbe089d1..d2018b8970d1c19f5770a69212389329693296f1 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-2015.06-XC.eb @@ -4,7 +4,7 @@ version = '2.7.9' homepage = 'http://python.org/' description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} toolchainopts = {'pic': True, 'opt': True, 'optarch': True} numpyversion = '1.9.1' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-2015.11-XC-bare.eb similarity index 95% rename from easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40-bare.eb rename to easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-2015.11-XC-bare.eb index 3fafaaa920caee5a5d3baca1e7a7db3b6b600aed..f91af70f07c39da621e4fc0bd63a3f1f1c15331a 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-2015.11-XC-bare.eb @@ -5,7 +5,7 @@ versionsuffix = '-bare' homepage = 'http://python.org/' description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} toolchainopts = {'pic': True, 'opt': True} source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-2015.11-XC.eb similarity index 98% rename from easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25.eb rename to easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-2015.11-XC.eb index 0c1b139dda1b53898424010860b9a0faa7ce969b..da85447313263436c9a053d861790257b413dc74 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-2015.11-XC.eb @@ -4,7 +4,7 @@ version = '2.7.9' homepage = 'http://python.org/' description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} toolchainopts = {'pic': True, 'opt': True, 'optarch': True} numpyversion = '1.9.1' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29-bare.eb deleted file mode 100644 index 5c84059a20ec16c4d4fde4364365fa1d4c2edd28..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.1.29-bare.eb +++ /dev/null @@ -1,39 +0,0 @@ -name = 'Python' -version = '2.7.9' -versionsuffix = '-bare' - -homepage = 'http://python.org/' -description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." - -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} -toolchainopts = {'pic': True, 'opt': True} - -source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] -sources = [SOURCE_TGZ] - -# python needs bzip2 to build the bz2 package -dependencies = [ - ('bzip2', '1.0.6'), - ('zlib', '1.2.8'), - ('libreadline', '6.3'), - ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons -] - -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel'), 'tk-devel'] - -# bare installation: no extensions included -exts_list = [] - -buildopts = 'LINKCC="$CC -dynamic"' - -sanity_check_commands = [ - ('python', '--version'), - ('python', '-c "import _ctypes"'), # make sure that foreign function interface (libffi) works - ('python', '-c "import _ssl"'), # make sure SSL support is enabled one way or another - ('python', '-c "import readline"'), # make sure readline module is installed (requires libreadline) - ('python', '-c "import Tkinter"'), # make sure Tkinter module is installed (requires Tk) -] - -moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-GCC-4.9.2-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-GCC-4.9.2-bare.eb index 7f438347a5a4904fab5f7963107845601804365c..3b6c965221828caceed13fe34a8a081458be763a 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-GCC-4.9.2-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-GCC-4.9.2-bare.eb @@ -19,8 +19,8 @@ dependencies = [ ('ncurses', '5.9'), ('SQLite', '3.8.8.1'), ('Tk', '8.6.3', '-no-X11'), -# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015.05.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015.05.eb index abb705a349eff8e55418d662e9496d829061fe0a..75386ccc4ae440fdd476204f4c3bac846ed86504 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015.05.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015.05.eb @@ -21,8 +21,8 @@ dependencies = [ ('ncurses', '5.9'), ('SQLite', '3.8.8.1'), ('Tk', '8.6.3', '-no-X11'), -# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb index dc26dc666bfb39985b0054631347a2f9838c65f7..a04b4992d3845721e9864bf8d50cb8c820db2ecb 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a-bare.eb @@ -19,8 +19,8 @@ dependencies = [ ('ncurses', '5.9'), ('SQLite', '3.8.8.1'), ('Tk', '8.6.3', '-no-X11'), -# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb index bb297e5eb8f68b2d2e970f14b84b1ec274cdb0f8..4d8258d2814dbe834747b4bb981629fdccda846c 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-foss-2015a.eb @@ -21,8 +21,8 @@ dependencies = [ ('ncurses', '5.9'), ('SQLite', '3.8.8.1'), ('Tk', '8.6.3', '-no-X11'), -# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb index ad2c37f79adb5bd9c619d6a67fe1f88a565f3bbb..e8eb88c738b8515c0acdd92406529736f5761d62 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-gompi-1.5.16-bare.eb @@ -18,8 +18,8 @@ dependencies = [ ('ncurses', '5.9'), ('SQLite', '3.8.8.1'), ('Tk', '8.6.3', '-no-X11'), -# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb index 27281d943cfd6eb641909c9b57adfafa60f61f65..7739e8b255f28286877c996601b1401b193d72bf 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.5.14.eb @@ -21,8 +21,8 @@ dependencies = [ ('ncurses', '5.9'), ('SQLite', '3.8.8.1'), ('Tk', '8.6.3', '-no-X11'), -# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.7.20.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.7.20.eb index c011298dc9c62f9feb9698ce0bfd77041e9b7a7f..41e6d0cc85a0022e8ea63d0e19670a50af085be3 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-goolf-1.7.20.eb @@ -22,7 +22,7 @@ dependencies = [ ('SQLite', '3.8.8.1'), ('Tk', '8.6.3', '-no-X11'), #('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb index d6a4eb1b3cb4883decd61523e54d63b252e278d8..f327891d4e89bb2eac7544a33b0072fb19e7b9ae 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a-bare.eb @@ -19,8 +19,8 @@ dependencies = [ ('ncurses', '5.9'), ('SQLite', '3.8.8.1'), ('Tk', '8.6.3', '-no-X11'), -# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb index 2c04d1e9a7f0df30f246722274fcc90c2ef4f67a..188046b96972413bb51af944e7b138d6b414e563 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-2.7.9-intel-2015a.eb @@ -21,8 +21,8 @@ dependencies = [ ('ncurses', '5.9'), ('SQLite', '3.8.8.1'), ('Tk', '8.6.3', '-no-X11'), -# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] @@ -41,9 +41,7 @@ exts_list = [ }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': [ - 'numpy-1.8.0-mkl.patch', # % numpyversion, - ], + 'patches': ['numpy-1.8.0-mkl.patch'], }), ('scipy', scipyversion, { 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb index ddf1d2d85390d0b5008ba7ad9c9c0430af53978d..9282981b3f706b4a8a9172b3f5568c45db80f26d 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-goalf-1.1.0-no-OFED.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] @@ -48,9 +48,6 @@ exts_list = [ ('mpi4py', '1.3', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), - ('argparse', '1.2.1', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), ('Cython', '0.19.1', { 'source_urls': ['http://www.cython.org/release/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb index 86066e4a5eb3c5b8aee0fd1ac75d70b0338099d7..98e26ec9ef9e2640d46dee45dde04b8860cec7a9 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-goolf-1.4.10.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] @@ -48,9 +48,6 @@ exts_list = [ ('mpi4py', '1.3', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), - ('argparse', '1.2.1', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), ('Cython', '0.19.1', { 'source_urls': ['http://www.cython.org/release/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb index b01168b83e9499e9210ad557aaaf0aa49d6bbc61..b110143efd89ed1e7c341ca56f0d529cf1647d6d 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-4.0.6.eb @@ -21,7 +21,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] @@ -50,9 +50,6 @@ exts_list = [ ('mpi4py', '1.3', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), - ('argparse', '1.2.1', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), ('Cython', '0.19.1', { 'source_urls': ['http://www.cython.org/release/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb index de9617eacf2ef57da0be8ee59774497069f65761..4bc546cccb224feaeff993eaddb52f7136206643 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.2.3-ictce-5.3.0.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.7'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] @@ -48,9 +48,6 @@ exts_list = [ ('mpi4py', '1.3', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), - ('argparse', '1.2.1', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), ('Cython', '0.19.1', { 'source_urls': ['http://www.cython.org/release/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb b/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb index f23e383d176628ba6472fa95773734311b7feb2e..0dc65b97cafb45b9b359fe8d356bd8ac1cd77765 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.3.2-goolf-1.4.10.eb @@ -19,7 +19,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb index 28d140c742f4d100facb9394ce8d32bbe5f444bd..24ae167fb42053856e72be5b5b43b25bb7d18d38 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-4.1.13.eb @@ -21,7 +21,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb index a66a2c142af3ca2a7e7069c0d3b79f8116a6ac83..97e6c04ce768b4701ae26d6d4780bdc15cf123ee 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.3.2-ictce-5.3.0.eb @@ -21,7 +21,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.2'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1f'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb index b7690d84fc789d268975ed57c180e3a805a710ff..66630e998024756b4c660470994c00aa39f69aa8 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2014b.eb @@ -22,7 +22,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] @@ -60,9 +60,6 @@ exts_list = [ 'paycheck-1.0.2_setup-open-README-utf8.patch', ], }), - ('argparse', '1.2.1', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), ('lockfile', '0.9.1', { 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], # tarball has changed upstream, so make sure we get the right version by verifying the checksum diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb index 91935078a9cf5e99aa877a2ed58a34f89ad551bc..d93f95e46a11c395573086dbc367b1b4ae459b4e 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.1-intel-2015a.eb @@ -22,7 +22,7 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons + # ('OpenSSL', '1.0.1g'), # OS dependency should be preferred for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] @@ -60,9 +60,6 @@ exts_list = [ 'paycheck-1.0.2_setup-open-README-utf8.patch', ], }), - ('argparse', '1.2.1', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), ('lockfile', '0.9.1', { 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], # tarball has changed upstream, so make sure we get the right version by verifying the checksum diff --git a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb index 5741325e74448e20da59427ab0e27a4f42546422..f8a3851092f9de828685b73cb6076653b39571ab 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.4.3-intel-2015a.eb @@ -19,8 +19,8 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1m'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev')] @@ -39,9 +39,7 @@ exts_list = [ }), ('numpy', numpyversion, { 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], - 'patches': [ - 'numpy-1.8.0-mkl.patch', # % numpyversion, - ], + 'patches': ['numpy-1.8.0-mkl.patch'], }), ('scipy', scipyversion, { 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], @@ -58,9 +56,6 @@ exts_list = [ 'paycheck-1.0.2_setup-open-README-utf8.patch', ], }), - ('argparse', '1.3.0', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), ('pbr', '0.11.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], }), @@ -100,7 +95,7 @@ exts_list = [ }), ('paramiko', '1.15.2', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), + }), ('pyparsing', '2.0.3', { 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-3.5.0-intel-2015b.eb b/easybuild/easyconfigs/p/Python/Python-3.5.0-intel-2015b.eb index 088e6f96d905601e35a3180543576d882f623a6a..ae86e7bce7760f87ac06bac560da523691b9d3bf 100644 --- a/easybuild/easyconfigs/p/Python/Python-3.5.0-intel-2015b.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.5.0-intel-2015b.eb @@ -19,8 +19,8 @@ dependencies = [ ('zlib', '1.2.8'), ('libreadline', '6.3'), ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1p'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1p'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev')] @@ -39,9 +39,7 @@ exts_list = [ }), ('numpy', numpyversion, { 'source_urls': ['https://pypi.python.org/packages/source/n/numpy/'], - 'patches': [ - 'numpy-1.8.0-mkl.patch', # % numpyversion, - ], + 'patches': ['numpy-1.8.0-mkl.patch'], }), ('scipy', scipyversion, { 'source_urls': ['https://pypi.python.org/packages/source/s/scipy/'], @@ -58,9 +56,6 @@ exts_list = [ 'paycheck-1.0.2_setup-open-README-utf8.patch', ], }), - ('argparse', '1.4.0', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], - }), ('pbr', '1.8.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], }), @@ -100,7 +95,7 @@ exts_list = [ }), ('paramiko', '1.15.2', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), + }), ('pyparsing', '2.0.3', { 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], }), diff --git a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/p/Python/Python-3.5.1-intel-2016a.eb similarity index 63% rename from easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40.eb rename to easybuild/easyconfigs/p/Python/Python-3.5.1-intel-2016a.eb index 186e5f94df6d0b1b73da88e9499b5d89613f3df1..e610aff618e6c81daaed7da080f81490faf4af7b 100644 --- a/easybuild/easyconfigs/p/Python/Python-2.7.9-CrayGNU-5.2.40.eb +++ b/easybuild/easyconfigs/p/Python/Python-3.5.1-intel-2016a.eb @@ -1,14 +1,14 @@ name = 'Python' -version = '2.7.9' +version = '3.5.1' homepage = 'http://python.org/' description = "Python is a programming language that lets you work more quickly and integrate your systems more effectively." -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchain = {'name': 'intel', 'version': '2016a'} toolchainopts = {'pic': True, 'opt': True, 'optarch': True} -numpyversion = '1.9.1' -scipyversion = '0.14.1' +numpyversion = '1.10.4' +scipyversion = '0.17.0' source_urls = ['http://www.python.org/ftp/%(namelower)s/%(version)s/'] sources = [SOURCE_TGZ] @@ -18,68 +18,74 @@ dependencies = [ ('bzip2', '1.0.6'), ('zlib', '1.2.8'), ('libreadline', '6.3'), - ('ncurses', '5.9'), -# ('OpenSSL', '1.0.1k'), # OS dependency should be preferred if the os version is more recent then this version, it's + ('ncurses', '6.0'), +# ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's # nice to have an up to date openssl for security reasons ] -osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel'), 'tk-devel'] - -buildopts = 'LINKCC="$CC -dynamic"' +osdependencies = [('openssl-devel', 'libssl-dev')] # order is important! -# package versions updated Jan 19th 2015 +# package versions updated Feb 25th 2016 exts_list = [ - ('setuptools', '11.3.1', { + ('setuptools', '20.1.1', { 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], }), - ('pip', '6.0.6', { + ('pip', '8.0.2', { 'source_urls': ['https://pypi.python.org/packages/source/p/pip/'], }), - ('nose', '1.3.4', { + ('nose', '1.3.7', { 'source_urls': ['https://pypi.python.org/packages/source/n/nose/'], }), ('numpy', numpyversion, { - 'source_urls': [('http://sourceforge.net/projects/numpy/files/NumPy/%s' % numpyversion, 'download')], + 'source_urls': ['https://pypi.python.org/packages/source/n/numpy/'], 'patches': [ - 'numpy-1.8.0-mkl.patch', # % numpyversion, + 'numpy-1.8.0-mkl.patch', + 'numpy-%s-sse42.patch' % numpyversion, ], }), ('scipy', scipyversion, { - 'source_urls': [('http://sourceforge.net/projects/scipy/files/scipy/%s' % scipyversion, 'download')], + 'source_urls': ['https://pypi.python.org/packages/source/s/scipy/'], }), ('blist', '1.3.6', { 'source_urls': ['https://pypi.python.org/packages/source/b/blist/'], }), - ('mpi4py', '1.3.1', { + ('mpi4py', '2.0.0', { 'source_urls': ['http://bitbucket.org/mpi4py/mpi4py/downloads/'], }), ('paycheck', '1.0.2', { 'source_urls': ['https://pypi.python.org/packages/source/p/paycheck/'], + 'patches': [ + 'paycheck-1.0.2_setup-open-README-utf8.patch', + ], }), - ('argparse', '1.2.1', { - 'source_urls': ['https://pypi.python.org/packages/source/a/argparse/'], + ('pbr', '1.8.1', { + 'source_urls': ['https://pypi.python.org/packages/source/p/pbr/'], }), - ('lockfile', '0.10.2', { + ('lockfile', '0.12.2', { 'source_urls': ['https://pypi.python.org/packages/source/l/lockfile/'], }), - ('Cython', '0.21.2', { + ('Cython', '0.23.4', { 'source_urls': ['http://www.cython.org/release/'], }), - ('six', '1.9.0', { + ('six', '1.10.0', { 'source_urls': ['https://pypi.python.org/packages/source/s/six/'], }), - ('dateutil', '2.4.0', { + ('dateutil', '2.4.2', { 'source_tmpl': 'python-%(name)s-%(version)s.tar.gz', 'source_urls': ['https://pypi.python.org/packages/source/p/python-dateutil/'], }), - ('deap', '1.0.1', { + ('deap', '1.0.2', { + 'source_tmpl': '%(name)s-%(version)s.post2.tar.gz', 'source_urls': ['https://pypi.python.org/packages/source/d/deap/'], + 'patches': [ + 'deap-1.0.2_setup-open-README-utf8.patch', + ], }), - ('decorator', '3.4.0', { + ('decorator', '4.0.9', { 'source_urls': ['https://pypi.python.org/packages/source/d/decorator/'], }), - ('arff', '2.0.1', { + ('arff', '2.1.0', { 'source_tmpl': 'liac-%(name)s-%(version)s.zip', 'source_urls': ['https://pypi.python.org/packages/source/l/liac-arff/'], }), @@ -87,29 +93,21 @@ exts_list = [ 'modulename': 'Crypto', 'source_urls': ['http://ftp.dlitz.net/pub/dlitz/crypto/pycrypto/'], }), - ('ecdsa', '0.11', { + ('ecdsa', '0.13', { 'source_urls': ['https://pypi.python.org/packages/source/e/ecdsa/'], }), - ('paramiko', '1.15.2', { + ('paramiko', '1.16.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/paramiko/'], - }), - ('pyparsing', '2.0.3', { + }), + ('pyparsing', '2.1.0', { 'source_urls': ['https://pypi.python.org/packages/source/p/pyparsing/'], }), ('netifaces', '0.10.4', { 'source_urls': ['https://pypi.python.org/packages/source/n/netifaces'], }), - ('netaddr', '0.7.13', { + ('netaddr', '0.7.18', { 'source_urls': ['https://pypi.python.org/packages/source/n/netaddr'], }), ] -sanity_check_commands = [ - ('python', '--version'), - ('python', '-c "import _ctypes"'), # make sure that foreign function interface (libffi) works - ('python', '-c "import _ssl"'), # make sure SSL support is enabled one way or another - ('python', '-c "import readline"'), # make sure readline module is installed (requires libreadline) - ('python', '-c "import Tkinter"'), # make sure Tkinter module is installed (requires Tk) -] - moduleclass = 'lang' diff --git a/easybuild/easyconfigs/p/Python/numpy-1.10.1-sse42.patch b/easybuild/easyconfigs/p/Python/numpy-1.10.1-sse42.patch new file mode 100644 index 0000000000000000000000000000000000000000..60cdd9673149e148738b4937babc6eff138f2645 --- /dev/null +++ b/easybuild/easyconfigs/p/Python/numpy-1.10.1-sse42.patch @@ -0,0 +1,25 @@ +#Remove hard coded -xSSE4.2 compilation flag for Intel compilers (add the usual -xHOST) +#compilation would fail on non-SSE4.2 CPUs, and for further CPUs/compilers it would restrict the generated code to SSE4.2 +# February 19th, 2016 by B. Hajgato - Free University Brussels (VUB) +--- numpy/distutils/intelccompiler.py.orig 2015-10-12 16:29:01.000000000 +0200 ++++ numpy/distutils/intelccompiler.py 2016-02-23 11:31:50.350422787 +0100 +@@ -49,7 +49,7 @@ + def __init__(self, verbose=0, dry_run=0, force=0): + UnixCCompiler.__init__(self, verbose, dry_run, force) + self.cc_exe = ('icc -m64 -fPIC -fp-model strict -O3 ' +- '-fomit-frame-pointer -openmp -xSSE4.2') ++ '-fomit-frame-pointer -openmp -xHOST') + compiler = self.cc_exe + self.set_executables(compiler=compiler, + compiler_so=compiler, +--- numpy/distutils/fcompiler/intel.py.orig 2015-10-12 16:29:01.000000000 +0200 ++++ numpy/distutils/fcompiler/intel.py 2016-02-23 11:31:50.350422787 +0100 +@@ -123,7 +123,7 @@ + return ['-openmp -fp-model strict'] + + def get_flags_arch(self): +- return ['-xSSE4.2'] ++ return ['-xHOST'] + + # Is there no difference in the version string between the above compilers + # and the Visual compilers? diff --git a/easybuild/easyconfigs/p/Python/numpy-1.10.4-sse42.patch b/easybuild/easyconfigs/p/Python/numpy-1.10.4-sse42.patch new file mode 100644 index 0000000000000000000000000000000000000000..75ffeaa0d5939995de089410a1dd77d8bce4e74c --- /dev/null +++ b/easybuild/easyconfigs/p/Python/numpy-1.10.4-sse42.patch @@ -0,0 +1,25 @@ +#Remove hard coded -xSSE4.2 compilation flag for Intel compilers (add the usual -xHOST) +#compilation would fail on non-SSE4.2 CPUs, and for further CPUs/compilers it would restrict the generated code to SSE4.2 +# February 19th, 2016 by B. Hajgato - Free University Brussels (VUB) +--- ./numpy/distutils/intelccompiler.py.orig 2016-01-06 22:07:54.000000000 +0100 ++++ ./numpy/distutils/intelccompiler.py 2016-02-19 15:07:00.438235792 +0100 +@@ -54,7 +54,7 @@ + def __init__(self, verbose=0, dry_run=0, force=0): + UnixCCompiler.__init__(self, verbose, dry_run, force) + self.cc_exe = ('icc -m64 -fPIC -fp-model strict -O3 ' +- '-fomit-frame-pointer -openmp -xSSE4.2') ++ '-fomit-frame-pointer -openmp -xHOST') + compiler = self.cc_exe + if platform.system() == 'Darwin': + shared_flag = '-Wl,-undefined,dynamic_lookup' +--- ./numpy/distutils/fcompiler/intel.py.orig 2016-01-07 03:16:25.000000000 +0100 ++++ ./numpy/distutils/fcompiler/intel.py 2016-02-19 15:07:16.424220745 +0100 +@@ -123,7 +123,7 @@ + return ['-openmp -fp-model strict'] + + def get_flags_arch(self): +- return ['-xSSE4.2'] ++ return ['-xHOST'] + + # Is there no difference in the version string between the above compilers + # and the Visual compilers? diff --git a/easybuild/easyconfigs/p/p7zip/p7zip-9.38.1-GCC-4.9.2.eb b/easybuild/easyconfigs/p/p7zip/p7zip-9.38.1-GCC-4.9.2.eb index aba7c4da3fd5d4576f6cd34984aca5762eb1db6f..f20b769e50803af7990dab548e7f9805815c1cec 100644 --- a/easybuild/easyconfigs/p/p7zip/p7zip-9.38.1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/p/p7zip/p7zip-9.38.1-GCC-4.9.2.eb @@ -17,7 +17,7 @@ buildopts = 'all3 CC="$CC" CXX="$CXX" OPTFLAGS="$CFLAGS"' files_to_copy = [ (['bin/7za', 'bin/7zr', 'bin/7zCon.sfx'], 'bin'), # stand-alone binaries - (['bin/7z', 'bin/7z.so', 'bin/Codecs'], 'libexec'), # 7z requires 7z.so plugin in same directory + (['bin/7z', 'bin/7z.%s' % SHLIB_EXT, 'bin/Codecs'], 'libexec'), # 7z requires 7z.so plugin in same directory ] # put script in place for 7z, since it *must* be called full path, to ensure that 7z.so is found in the same directory @@ -28,7 +28,7 @@ postinstallcmds = [ ] sanity_check_paths = { - 'files': ['bin/7z', 'bin/7za', 'bin/7zCon.sfx', 'bin/7zr', 'libexec/7z', 'libexec/7z.so'], + 'files': ['bin/7z', 'bin/7za', 'bin/7zCon.sfx', 'bin/7zr', 'libexec/7z', 'libexec/7z.%s' % SHLIB_EXT], 'dirs': ['libexec/Codecs'], } diff --git a/easybuild/easyconfigs/p/p7zip/p7zip-9.38.1.eb b/easybuild/easyconfigs/p/p7zip/p7zip-9.38.1.eb index b709c55a99bb41e02f085b0e8642ececce9bccf0..082cc254b85e6ddd8f712cbc975bee33d7523c06 100644 --- a/easybuild/easyconfigs/p/p7zip/p7zip-9.38.1.eb +++ b/easybuild/easyconfigs/p/p7zip/p7zip-9.38.1.eb @@ -17,7 +17,7 @@ buildopts = 'all3' files_to_copy = [ (['bin/7za', 'bin/7zr', 'bin/7zCon.sfx'], 'bin'), # stand-alone binaries - (['bin/7z', 'bin/7z.so', 'bin/Codecs'], 'libexec'), # 7z requires 7z.so plugin in same directory + (['bin/7z', 'bin/7z.%s' % SHLIB_EXT, 'bin/Codecs'], 'libexec'), # 7z requires 7z.so plugin in same directory ] # put script in place for 7z, since it *must* be called full path, to ensure that 7z.so is found in the same directory @@ -28,7 +28,7 @@ postinstallcmds = [ ] sanity_check_paths = { - 'files': ['bin/7z', 'bin/7za', 'bin/7zCon.sfx', 'bin/7zr', 'libexec/7z', 'libexec/7z.so'], + 'files': ['bin/7z', 'bin/7za', 'bin/7zCon.sfx', 'bin/7zr', 'libexec/7z', 'libexec/7z.%s' % SHLIB_EXT], 'dirs': ['libexec/Codecs'], } diff --git a/easybuild/easyconfigs/p/pBWA/pBWA-0.5.9_1.21009-goolf-1.4.10.eb b/easybuild/easyconfigs/p/pBWA/pBWA-0.5.9_1.21009-goolf-1.4.10.eb index fa5b729bcb665c94125a32b00bba0743f166fa49..f8e2358b4aa780f53637547de88b7d42f3e50a97 100644 --- a/easybuild/easyconfigs/p/pBWA/pBWA-0.5.9_1.21009-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/pBWA/pBWA-0.5.9_1.21009-goolf-1.4.10.eb @@ -23,11 +23,11 @@ source_urls = [('http://sourceforge.net/projects/pbwa/files/latest', 'download') dependencies = [('BWA', '0.7.4')] -files_to_copy = [(['pBWA','qualfa2fq.pl','solid2fastq.pl' ], 'bin')] +files_to_copy = [(['pBWA', 'qualfa2fq.pl', 'solid2fastq.pl'], 'bin')] sanity_check_paths = { - 'files': ['bin/pBWA','bin/qualfa2fq.pl','bin/solid2fastq.pl'], + 'files': ['bin/pBWA', 'bin/qualfa2fq.pl', 'bin/solid2fastq.pl'], 'dirs': ['.'], -} +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/packmol/packmol-13.243-ictce-4.1.13.eb b/easybuild/easyconfigs/p/packmol/packmol-13.243-ictce-4.1.13.eb index a6e1069f314ae5a6cbc34fc721b817c5736d0a35..29c565eb8dc8f69ec04b33f9df4e1767c7c26d13 100644 --- a/easybuild/easyconfigs/p/packmol/packmol-13.243-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/packmol/packmol-13.243-ictce-4.1.13.eb @@ -13,9 +13,9 @@ source_urls = ['https://packmol.googlecode.com/files'] buildopts = 'FORTRAN="$F90"' -files_to_copy = [(['packmol'],'bin'), 'COPYING', 'AUTHORS', 'LICENSE'] +files_to_copy = [(['packmol'], 'bin'), 'COPYING', 'AUTHORS', 'LICENSE'] -sanity_check_paths={ +sanity_check_paths = { 'files': ['bin/packmol', 'COPYING', 'AUTHORS', 'LICENSE'], 'dirs': [], } diff --git a/easybuild/easyconfigs/p/pandas/pandas-0.17.1-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/p/pandas/pandas-0.17.1-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..35f47526a2e594b2c54b2ddd728f561d31b46eb0 --- /dev/null +++ b/easybuild/easyconfigs/p/pandas/pandas-0.17.1-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,28 @@ +easyblock = 'PythonPackage' + +name = 'pandas' +version = '0.17.1' + +homepage = "https://pypi.python.org/pypi/pandas/" +description = """pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures + and data analysis tools for the Python programming language.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pyver = '2.7.10' + +versionsuffix = "-%s-%s" % (python, pyver) + +dependencies = [(python, pyver)] + +py_short_ver = '.'.join(pyver.split('.')[:2]) +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages' % py_short_ver], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/pangox-compat/pangox-compat-0.0.2-intel-2015b-Pango-1.37.1.eb b/easybuild/easyconfigs/p/pangox-compat/pangox-compat-0.0.2-intel-2015b-Pango-1.37.1.eb index e488d95cd880ea6151b25bd89a6be3a54f391f10..f2a20187d474614badd91376e4edda67427aa499 100644 --- a/easybuild/easyconfigs/p/pangox-compat/pangox-compat-0.0.2-intel-2015b-Pango-1.37.1.eb +++ b/easybuild/easyconfigs/p/pangox-compat/pangox-compat-0.0.2-intel-2015b-Pango-1.37.1.eb @@ -16,7 +16,7 @@ versionsuffix = '-Pango-%s' % pangover dependencies = [('Pango', pangover)] sanity_check_paths = { - 'files': ['lib/libpangox-1.0.a', 'lib/libpangox-1.0.so', 'lib/pkgconfig/pangox.pc', + 'files': ['lib/libpangox-1.0.a', 'lib/libpangox-1.0.%s' % SHLIB_EXT, 'lib/pkgconfig/pangox.pc', 'include/pango-1.0/pango/pangox.h'], 'dirs': [], } diff --git a/easybuild/easyconfigs/p/parallel/parallel-20151222-foss-2015b.eb b/easybuild/easyconfigs/p/parallel/parallel-20151222-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..693b7da49a0bd0542d6bb88e0578d175ffdfacc6 --- /dev/null +++ b/easybuild/easyconfigs/p/parallel/parallel-20151222-foss-2015b.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'parallel' +version = '20151222' + +homepage = 'http://savannah.gnu.org/projects/parallel/' +description = """parallel: Build and execute shell commands in parallel""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = [GNU_SOURCE] + +dependencies = [ + ('Perl', '5.22.0', '-bare'), +] + +sanity_check_paths = { + 'files': ['bin/parallel'], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/patchelf/patchelf-0.8-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/p/patchelf/patchelf-0.8-GNU-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..e63fac1d5dccef5303766053041de8c9301c4a35 --- /dev/null +++ b/easybuild/easyconfigs/p/patchelf/patchelf-0.8-GNU-4.9.3-2.25.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'patchelf' +version = '0.8' + +homepage = 'http://nixos.org/patchelf.html' +description = """PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.""" + +toolchain = {'name': 'GNU', 'version': '4.9.3-2.25'} + +source_urls = ['https://github.com/NixOS/patchelf/archive/'] +sources = ['%(version)s.tar.gz'] + +preconfigopts = "sh bootstrap.sh && " + +sanity_check_paths = { + 'files': ['bin/patchelf'], + 'dirs': ['share'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/pbs_python/pbs_python-4.6.0.eb b/easybuild/easyconfigs/p/pbs_python/pbs_python-4.6.0.eb index f7408c29848e6047d273423219a3196ae79d3684..e0b6cd1a17ecb69825394e3749acfc0fcfcd0b5a 100644 --- a/easybuild/easyconfigs/p/pbs_python/pbs_python-4.6.0.eb +++ b/easybuild/easyconfigs/p/pbs_python/pbs_python-4.6.0.eb @@ -9,7 +9,7 @@ description = """The pbs_python package is a wrapper class for the Torque C libr an ascii version named pbsmon. PBSQuery is also included in this package. This is a python module build on top of the pbs python module to simplify querying the batch server, eg: how many jobs, how many nodes, ...""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} source_urls = ['http://ftp.sara.nl/pub/outgoing/'] sources = [SOURCE_TAR_GZ] diff --git a/easybuild/easyconfigs/p/petsc4py/petsc4py-3.3-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/p/petsc4py/petsc4py-3.3-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 8d1c2ba947db9d23e2f03526d5e53d16a9402126..3f1cdad255d20ffcce59d21bb6dc66ac2b0f7fbd 100644 --- a/easybuild/easyconfigs/p/petsc4py/petsc4py-3.3-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/petsc4py/petsc4py-3.3-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -16,16 +16,16 @@ python_version = "2.7.3" versionsuffix = '-%s-%s' % (python, python_version) dependencies = [ - (python, python_version), - ('PETSc', '3.3-p2', versionsuffix) - ] + (python, python_version), + ('PETSc', '3.3-p2', versionsuffix) +] py_short_ver = ".".join(python_version.split(".")[0:2]) pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) sanity_check_paths = { - 'files': [], - 'dirs': [pylibdir] - } + 'files': [], + 'dirs': [pylibdir] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/petsc4py/petsc4py-3.3-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/p/petsc4py/petsc4py-3.3-goolf-1.4.10-Python-2.7.3.eb index bdc63798eccfc0c97c0080a900ee6df1e4f06def..0387cd385f720012a4a2e64e4085bf23ebb7ac0d 100644 --- a/easybuild/easyconfigs/p/petsc4py/petsc4py-3.3-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/petsc4py/petsc4py-3.3-goolf-1.4.10-Python-2.7.3.eb @@ -16,16 +16,16 @@ python_version = "2.7.3" versionsuffix = '-%s-%s' % (python, python_version) dependencies = [ - (python, python_version), - ('PETSc', '3.3-p2', versionsuffix) - ] + (python, python_version), + ('PETSc', '3.3-p2', versionsuffix) +] py_short_ver = ".".join(python_version.split(".")[0:2]) pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) sanity_check_paths = { - 'files': [], - 'dirs': [pylibdir] - } + 'files': [], + 'dirs': [pylibdir] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/petsc4py/petsc4py-3.3-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/p/petsc4py/petsc4py-3.3-ictce-4.0.6-Python-2.7.3.eb index 663ceba6becb343b46526898a66923ac5de0256c..72bb7cec0655b3831f32fb6cc37d20783f90c883 100644 --- a/easybuild/easyconfigs/p/petsc4py/petsc4py-3.3-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/petsc4py/petsc4py-3.3-ictce-4.0.6-Python-2.7.3.eb @@ -16,16 +16,16 @@ python_version = "2.7.3" versionsuffix = '-%s-%s' % (python, python_version) dependencies = [ - (python, python_version), - ('PETSc', '3.3-p2', versionsuffix) - ] + (python, python_version), + ('PETSc', '3.3-p2', versionsuffix) +] py_short_ver = ".".join(python_version.split(".")[0:2]) pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) sanity_check_paths = { - 'files': [], - 'dirs': [pylibdir] - } + 'files': [], + 'dirs': [pylibdir] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/petsc4py/petsc4py-3.3-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/p/petsc4py/petsc4py-3.3-ictce-5.3.0-Python-2.7.3.eb index 6af9bfee59a6e6cd365f12f3f72b3178e42d7c41..50d6cb2145c31cc0367c6cd648728b4b2721c53e 100644 --- a/easybuild/easyconfigs/p/petsc4py/petsc4py-3.3-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/petsc4py/petsc4py-3.3-ictce-5.3.0-Python-2.7.3.eb @@ -17,16 +17,16 @@ python_version = "2.7.3" versionsuffix = '-%s-%s' % (python, python_version) dependencies = [ - (python, python_version), - ('PETSc', '3.3-p2', versionsuffix) - ] + (python, python_version), + ('PETSc', '3.3-p2', versionsuffix) +] py_short_ver = ".".join(python_version.split(".")[0:2]) pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) sanity_check_paths = { - 'files': [], - 'dirs': [pylibdir] - } + 'files': [], + 'dirs': [pylibdir] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/petsc4py/petsc4py-3.6.0-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/p/petsc4py/petsc4py-3.6.0-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..25e343af47f91a3786c21bd8574451ee4fead571 --- /dev/null +++ b/easybuild/easyconfigs/p/petsc4py/petsc4py-3.6.0-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,28 @@ +easyblock = 'PythonPackage' + +name = 'petsc4py' +version = '3.6.0' + +homepage = 'https://bitbucket.org/petsc/petsc4py' +description = "petsc4py are Python bindings for PETSc, the Portable, Extensible Toolchain for Scientific Computation." + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +pyver = '2.7.11' +versionsuffix = '-Python-%s' % pyver + +dependencies = [ + ('Python', pyver), + ('PETSc', '3.6.3', versionsuffix) +] + +pyshortver = '.'.join(pyver.split('.')[:2]) +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages' % pyshortver], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/phonopy/phonopy-1.10.1-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/p/phonopy/phonopy-1.10.1-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..8ce0f20b144ad825e8e3f15d3f0845737cb761ac --- /dev/null +++ b/easybuild/easyconfigs/p/phonopy/phonopy-1.10.1-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,32 @@ +easyblock = 'PythonPackage' + +name = 'phonopy' +version = '1.10.1' + +homepage = 'http://atztogo.github.io/phonopy/' +description = """Phonopy is an open source package of phonon calculations based on the supercell approach.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +pyver = '2.7.11' +pyshortver = '.'.join(pyver.split('.')[:2]) + +versionsuffix = '-Python-%s' % pyver + +dependencies = [ + ('Python', pyver), + ('matplotlib', '1.5.1', versionsuffix), + ('lxml', '3.5.0', versionsuffix), + ('PyYAML', '3.11', versionsuffix), +] + + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/%%(name)s' % pyshortver], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/p/phonopy/phonopy-1.6.4-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/p/phonopy/phonopy-1.6.4-goolf-1.4.10-Python-2.7.3.eb index 2e67c2d36793242665819bae697fbbeaa9042767..72709131d2fea61dacb221669132875e6b0f9be5 100644 --- a/easybuild/easyconfigs/p/phonopy/phonopy-1.6.4-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/phonopy/phonopy-1.6.4-goolf-1.4.10-Python-2.7.3.eb @@ -32,4 +32,3 @@ sanity_check_paths = { } moduleclass = 'lib' - diff --git a/easybuild/easyconfigs/p/phonopy/phonopy-1.6.4-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/p/phonopy/phonopy-1.6.4-ictce-5.3.0-Python-2.7.3.eb index c9d54a15dd18108e2af462283dc99c35f3b2391a..4f215834cc545cb92d0ba43155da1c5585f23a62 100644 --- a/easybuild/easyconfigs/p/phonopy/phonopy-1.6.4-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/phonopy/phonopy-1.6.4-ictce-5.3.0-Python-2.7.3.eb @@ -32,4 +32,3 @@ sanity_check_paths = { } moduleclass = 'lib' - diff --git a/easybuild/easyconfigs/p/picard/picard-1.100.eb b/easybuild/easyconfigs/p/picard/picard-1.100.eb index d852bf4290e86d702f66d1305772da8d3ff2cddf..aa4b9cb85c30cfb40f47c203978d2e6a56102e31 100644 --- a/easybuild/easyconfigs/p/picard/picard-1.100.eb +++ b/easybuild/easyconfigs/p/picard/picard-1.100.eb @@ -4,7 +4,7 @@ version = '1.100' homepage = 'http://sourceforge.net/projects/picard' description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} source_urls = [SOURCEFORGE_SOURCE] sources = ['%(name)s-tools-%(version)s.zip'] diff --git a/easybuild/easyconfigs/p/picard/picard-1.109.eb b/easybuild/easyconfigs/p/picard/picard-1.109.eb index b02c4dfde3bc59612325564d3d90cc1b3e535b8e..054ac53148acd1ef2e6c7463da07218ff5cdbd8e 100644 --- a/easybuild/easyconfigs/p/picard/picard-1.109.eb +++ b/easybuild/easyconfigs/p/picard/picard-1.109.eb @@ -4,7 +4,7 @@ version = '1.109' homepage = 'http://sourceforge.net/projects/picard' description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} source_urls = [SOURCEFORGE_SOURCE] sources = ['%(name)s-tools-%(version)s.zip'] diff --git a/easybuild/easyconfigs/p/picard/picard-1.119-Java-1.7.0_80.eb b/easybuild/easyconfigs/p/picard/picard-1.119-Java-1.7.0_80.eb index a097dca76dd5c335938654a8e6ee894f0a17b74a..0d8e511c3f7d8c7c39d35939bce064f7110675bc 100644 --- a/easybuild/easyconfigs/p/picard/picard-1.119-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/p/picard/picard-1.119-Java-1.7.0_80.eb @@ -4,7 +4,7 @@ version = '1.119' homepage = 'http://sourceforge.net/projects/picard' description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} source_urls = [SOURCEFORGE_SOURCE] sources = ['%(name)s-tools-%(version)s.zip'] diff --git a/easybuild/easyconfigs/p/picard/picard-1.119.eb b/easybuild/easyconfigs/p/picard/picard-1.119.eb index b6b8db08ef382afb3f80afbda74b7a5fa982e650..b8822ebb221de8cf1a1a0a9c428acea939a6efcd 100644 --- a/easybuild/easyconfigs/p/picard/picard-1.119.eb +++ b/easybuild/easyconfigs/p/picard/picard-1.119.eb @@ -4,7 +4,7 @@ version = '1.119' homepage = 'http://sourceforge.net/projects/picard' description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} source_urls = [SOURCEFORGE_SOURCE] sources = ['%(name)s-tools-%(version)s.zip'] diff --git a/easybuild/easyconfigs/p/picard/picard-1.39.eb b/easybuild/easyconfigs/p/picard/picard-1.39.eb index 47c911c385a6f34d71b70d3180f9d8b5ad7c8651..3f179ac9b7eebbf96abb8adb945a00dc037aba00 100644 --- a/easybuild/easyconfigs/p/picard/picard-1.39.eb +++ b/easybuild/easyconfigs/p/picard/picard-1.39.eb @@ -4,7 +4,7 @@ version = '1.39' homepage = 'http://sourceforge.net/projects/picard' description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format.""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} source_urls = [SOURCEFORGE_SOURCE] sources = ['%(name)s-tools-%(version)s.zip'] diff --git a/easybuild/easyconfigs/p/picard/picard-2.1.0.eb b/easybuild/easyconfigs/p/picard/picard-2.1.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..702287f8f6a5d7792834b49e76080ed2ba6c3be3 --- /dev/null +++ b/easybuild/easyconfigs/p/picard/picard-2.1.0.eb @@ -0,0 +1,20 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Adam Huffman +# The Francis Crick Institute + +name = 'picard' +version = '2.1.0' + +homepage = 'http://broadinstitute.github.io/picard/' +description = """ A set of command line tools (in Java) for manipulating + high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM + and VCF.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['https://github.com/broadinstitute/%(name)s/releases/download/%(version)s'] +sources = ['%(name)s-tools-%(version)s.zip'] + +dependencies = [('Java', '1.8.0_74')] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb index 2c50b49d2278e90481f06d3407bf075e038dea60..292fb226d32d2adcf50372464bf0a88e70c5928e 100644 --- a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-goolf-1.4.10.eb @@ -6,7 +6,7 @@ easyblock = 'MakeCp' name = 'pigz' -version = '2.3.1' +version = '2.3.1' homepage = 'http://zlib.net/pigz/' description = """ pigz, which stands for parallel implementation of gzip, is a fully @@ -27,7 +27,7 @@ buildopts = ' CC=$CC' parallel = 1 files_to_copy = [(["pigz", "unpigz"], "bin")] - + sanity_check_paths = { 'files': ["bin/pigz", "bin/unpigz"], 'dirs': [""], diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb index ec92fe5f04e1108ff8e83c97860a501cd3234d96..770c70dd5f7fca5b595374c442ef1c2a42b2472c 100644 --- a/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.1-ictce-6.2.5.eb @@ -6,7 +6,7 @@ easyblock = 'MakeCp' name = 'pigz' -version = '2.3.1' +version = '2.3.1' homepage = 'http://zlib.net/pigz/' description = """ pigz, which stands for parallel implementation of gzip, is a fully @@ -27,7 +27,7 @@ buildopts = ' CC=$CC' parallel = 1 files_to_copy = [(["pigz", "unpigz"], "bin")] - + sanity_check_paths = { 'files': ["bin/pigz", "bin/unpigz"], 'dirs': [""], diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2015b.eb b/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..e95cb85cb9fc0be28fbae6ad68496752d5a96775 --- /dev/null +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.3-foss-2015b.eb @@ -0,0 +1,39 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = 'MakeCp' + +name = 'pigz' +version = '2.3.3' + +homepage = 'http://zlib.net/pigz/' +description = """ pigz, which stands for parallel implementation of gzip, is a fully + functional replacement for gzip that exploits multiple processors and multiple cores + to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib + and pthread libraries. """ + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = ['http://zlib.net/pigz/'] +sources = [SOURCE_TAR_GZ] + +# Patch Makefile so zlib provided by EasyBuild is picked up +patches = ['pigz-2.3.3_Makefile.patch'] + +# README recommends zlib 1.2.6 or higher +dependencies = [('zlib', '1.2.8')] + +buildopts = ' CC=$CC' + +parallel = 1 + +files_to_copy = [(["pigz", "unpigz"], "bin")] + +sanity_check_paths = { + 'files': ["bin/pigz", "bin/unpigz"], + 'dirs': [""], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/pigz/pigz-2.3.3_Makefile.patch b/easybuild/easyconfigs/p/pigz/pigz-2.3.3_Makefile.patch new file mode 100644 index 0000000000000000000000000000000000000000..cef334ae06b50d99b88246a51c1ee0ad246f82a0 --- /dev/null +++ b/easybuild/easyconfigs/p/pigz/pigz-2.3.3_Makefile.patch @@ -0,0 +1,16 @@ +--- Makefile.orig 2016-01-11 13:27:20.537470900 +1030 ++++ Makefile 2016-01-11 13:27:35.557588464 +1030 +@@ -1,11 +1,10 @@ +-CC=cc +-CFLAGS=-O3 -Wall -Wextra ++ZLIB=-L$(EBROOTZLIB)/lib + LDFLAGS=-lz + ZOPFLI=zopfli/src/zopfli/ + # use gcc and gmake on Solaris + + pigz: pigz.o yarn.o try.o ${ZOPFLI}deflate.o ${ZOPFLI}blocksplitter.o ${ZOPFLI}tree.o ${ZOPFLI}lz77.o ${ZOPFLI}cache.o ${ZOPFLI}hash.o ${ZOPFLI}util.o ${ZOPFLI}squeeze.o ${ZOPFLI}katajainen.o +- $(CC) $(LDFLAGS) -o pigz $^ -lpthread -lm ++ $(CC) $(ZLIB) -o pigz $^ -lpthread -lm $(LDFLAGS) + ln -f pigz unpigz + + pigz.o: pigz.c yarn.h try.h ${ZOPFLI}deflate.h ${ZOPFLI}util.h diff --git a/easybuild/easyconfigs/p/pip/pip-7.1.2-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/p/pip/pip-7.1.2-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..3b1ec70aab6bc119172a6563ba80837fdfeac1cf --- /dev/null +++ b/easybuild/easyconfigs/p/pip/pip-7.1.2-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,22 @@ +easyblock = 'PythonPackage' + +name = 'pip' +version = '7.1.2' + +homepage = 'https://pip.pypa.io' +description = """The PyPA recommended tool for installing Python packages.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pyver = '2.7.10' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), +] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/pip/pip-8.0.2-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/p/pip/pip-8.0.2-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..7bc4eae5a192d2a7cd3239583dc6c4f04bf15363 --- /dev/null +++ b/easybuild/easyconfigs/p/pip/pip-8.0.2-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,19 @@ +easyblock = 'PythonPackage' + +name = 'pip' +version = '8.0.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://pip.pypa.io' +description = """The PyPA recommended tool for installing Python packages.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '2.7.11'), +] + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goalf-1.1.0-no-OFED.eb index 50258b4bd0f6462016c614f299a8765435aa6a3f..9cffd5d148d0fa645950e742a94dc579d2e20048 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goalf-1.1.0-no-OFED.eb @@ -13,7 +13,7 @@ source_urls = ['http://cairographics.org/releases/'] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['lib/libpixman-1.so'], + 'files': ['lib/libpixman-1.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goolf-1.4.10.eb b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goolf-1.4.10.eb index 541743ef66f6ba1440fb6be735c9d4d3be9d42ab..62bdd5d5547b832f5b449ab4666fb1e166a826a7 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-goolf-1.4.10.eb @@ -13,7 +13,7 @@ source_urls = ['http://cairographics.org/releases/'] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['lib/libpixman-1.so'], + 'files': ['lib/libpixman-1.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-3.2.2.u3.eb index 7971e5ec6d0a43bde1bd082b3d041483476d80fa..61be50bbbfcbe1c8add771574f74c1d021e02e03 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-3.2.2.u3.eb @@ -13,7 +13,7 @@ source_urls = ['http://cairographics.org/releases/'] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['lib/libpixman-1.so'], + 'files': ['lib/libpixman-1.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-4.1.13.eb b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-4.1.13.eb index 003ed58349a2e7332b10692699fcf23bc1c099bc..9d840139aa70175ee3f230c236b4b6b151d2e2f6 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-4.1.13.eb @@ -13,7 +13,7 @@ source_urls = ['http://cairographics.org/releases/'] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['lib/libpixman-1.so'], + 'files': ['lib/libpixman-1.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-5.3.0.eb b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-5.3.0.eb index 730661425c90dcfffe256e68b5325b271f1bc751..95b98067f098566353ae36e49dd191adfba91cdc 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.28.2-ictce-5.3.0.eb @@ -13,7 +13,7 @@ source_urls = ['http://cairographics.org/releases/'] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['lib/libpixman-1.so'], + 'files': ['lib/libpixman-1.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.32.6-goolf-1.7.20.eb b/easybuild/easyconfigs/p/pixman/pixman-0.32.6-goolf-1.7.20.eb index 9a915bad5f07f1c75fafd779994dd2c1d9efaacf..b69347b571e5ac62cd5da690a9f6f1639b4e915d 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.32.6-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.32.6-goolf-1.7.20.eb @@ -13,7 +13,7 @@ source_urls = ['http://cairographics.org/releases/'] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['lib/libpixman-1.so'], + 'files': ['lib/libpixman-1.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb b/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb index dc69def433077dc18ebc01fd42c99274809c6ea2..9d1bad81517876d4d82a4463add5178a47fed4ee 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2014b.eb @@ -13,7 +13,7 @@ source_urls = ['http://cairographics.org/releases/'] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['lib/libpixman-1.so'], + 'files': ['lib/libpixman-1.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2015a.eb b/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2015a.eb index 480001289ad988385e94f2c6319de9908c524083..7c7c7a06baa73e5af281413a4252f84ee484b6c6 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2015a.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.32.6-intel-2015a.eb @@ -13,7 +13,7 @@ source_urls = ['http://cairographics.org/releases/'] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['lib/libpixman-1.so'], + 'files': ['lib/libpixman-1.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.32.8-intel-2015b.eb b/easybuild/easyconfigs/p/pixman/pixman-0.32.8-intel-2015b.eb index f938cf12081b8e5c43deca5336439b49fc3afcdd..d916e6e26365f8703fd328144189a8b844f14458 100644 --- a/easybuild/easyconfigs/p/pixman/pixman-0.32.8-intel-2015b.eb +++ b/easybuild/easyconfigs/p/pixman/pixman-0.32.8-intel-2015b.eb @@ -13,7 +13,7 @@ source_urls = ['http://cairographics.org/releases/'] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['lib/libpixman-1.so'], + 'files': ['lib/libpixman-1.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/p/pixman/pixman-0.34.0-intel-2016a.eb b/easybuild/easyconfigs/p/pixman/pixman-0.34.0-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..79670989c4406cc3aef6a379d40aabca9f9b70e9 --- /dev/null +++ b/easybuild/easyconfigs/p/pixman/pixman-0.34.0-intel-2016a.eb @@ -0,0 +1,20 @@ +easyblock = 'ConfigureMake' + +name = "pixman" +version = '0.34.0' + +homepage = 'http://www.pixman.org/' +description = """Pixman is a low-level software library for pixel manipulation, providing features such as image +compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['http://cairographics.org/releases/'] +sources = [SOURCE_TAR_GZ] + +sanity_check_paths = { + 'files': ['lib/libpixman-1.%s' % SHLIB_EXT], + 'dirs': [] +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-foss-2015b.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..73c06e7f1b0ec40c631a6591bb99bf9ea97db0b9 --- /dev/null +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-foss-2015b.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'pkg-config' +version = '0.27.1' + +homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' +description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the + correct compiler options on the command line so an application can use + gcc -o test test.c `pkg-config --libs --cflags glib-2.0` + for instance, rather than hard-coding values on where to find glib (or other libraries).""" + +# don't use PAX, it might break. +tar_config_opts = True + +toolchain = {'name': 'foss', 'version': '2015b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://pkgconfig.freedesktop.org/releases/'] + +configopts = " --with-internal-glib" + +sanity_check_paths = { + 'files': ['bin/pkg-config'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goalf-1.1.0-no-OFED.eb index b0953355e6e417452b0b31e2306ede09c127cf8f..5d80b51c52d405b97a3d4c71aa61efccf5ecd1f1 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goalf-1.1.0-no-OFED.eb @@ -9,7 +9,7 @@ description = """pkg-config is a helper tool used when compiling applications an gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries).""" -toolchain = {'name': 'goalf', 'version' : '1.1.0-no-OFED'} +toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://pkgconfig.freedesktop.org/releases/'] @@ -17,8 +17,8 @@ source_urls = ['http://pkgconfig.freedesktop.org/releases/'] configopts = " --with-internal-glib" sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [] - } + 'files': ['bin/pkg-config'], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goolf-1.4.10.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goolf-1.4.10.eb index d6281260973a92cce10e18268a05c1c8dbf4c433..0b6b8bc92789a6c447bdc5a5a87b75bf6c0c4b5c 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-goolf-1.4.10.eb @@ -17,8 +17,8 @@ source_urls = ['http://pkgconfig.freedesktop.org/releases/'] configopts = " --with-internal-glib" sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [] - } + 'files': ['bin/pkg-config'], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-4.0.6.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-4.0.6.eb index 2d7168b4db723d3a912fc30f5681381fc1c05004..059a00070094c105d09bba34ea1d3b9952fd4c9a 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-4.0.6.eb @@ -9,7 +9,7 @@ description = """pkg-config is a helper tool used when compiling applications an gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries).""" -toolchain = {'name': 'ictce', 'version' : '4.0.6'} +toolchain = {'name': 'ictce', 'version': '4.0.6'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://pkgconfig.freedesktop.org/releases/'] @@ -17,8 +17,8 @@ source_urls = ['http://pkgconfig.freedesktop.org/releases/'] configopts = " --with-internal-glib" sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [] - } + 'files': ['bin/pkg-config'], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.3.0.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.3.0.eb index d9c51d2da3b241677f63ef94e845ac05eb0bde6f..206bdee24407f8e0c7b95be60f7f184b690e78cb 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.3.0.eb @@ -18,8 +18,8 @@ source_urls = ['http://pkgconfig.freedesktop.org/releases/'] configopts = " --with-internal-glib" sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [] - } + 'files': ['bin/pkg-config'], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.5.0.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.5.0.eb index 927b413c4e73765ba50895e422d563c7858b16ae..fee25e4441373b4bd33a2cbc1da44a0976f4b45e 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-ictce-5.5.0.eb @@ -20,8 +20,8 @@ source_urls = ['http://pkgconfig.freedesktop.org/releases/'] configopts = " --with-internal-glib" sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [] - } + 'files': ['bin/pkg-config'], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-intel-2015b.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..f271d1a6738954507f5984ca406b763ef39e8e28 --- /dev/null +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.27.1-intel-2015b.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'pkg-config' +version = '0.27.1' + +homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' +description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the + correct compiler options on the command line so an application can use + gcc -o test test.c `pkg-config --libs --cflags glib-2.0` + for instance, rather than hard-coding values on where to find glib (or other libraries).""" + +# don't use PAX, it might break. +tar_config_opts = True + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://pkgconfig.freedesktop.org/releases/'] + +configopts = " --with-internal-glib" + +sanity_check_paths = { + 'files': ['bin/pkg-config'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-GCC-4.8.2.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-GCC-4.8.2.eb index fa19c90773732451f403b9469d11336b9702d46c..b4996e7af35594a442f250ed7216ad9956a97e00 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-GCC-4.8.2.eb @@ -20,8 +20,8 @@ source_urls = ['http://pkgconfig.freedesktop.org/releases/'] configopts = " --with-internal-glib" sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [] - } + 'files': ['bin/pkg-config'], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-ictce-5.5.0.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-ictce-5.5.0.eb index 309549fb3b4e0ff1e37a958b674aabd932d48aef..7c85168da3f6be663efeaad3e125e139b0af5f44 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.28-ictce-5.5.0.eb @@ -20,8 +20,8 @@ source_urls = ['http://pkgconfig.freedesktop.org/releases/'] configopts = " --with-internal-glib" sanity_check_paths = { - 'files': ['bin/pkg-config'], - 'dirs': [] - } + 'files': ['bin/pkg-config'], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29-intel-2015a.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..55e66932e222da03ab889a915fb6dae72b893bc0 --- /dev/null +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29-intel-2015a.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'pkg-config' +version = '0.29' + +homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' +description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the + correct compiler options on the command line so an application can use + gcc -o test test.c `pkg-config --libs --cflags glib-2.0` + for instance, rather than hard-coding values on where to find glib (or other libraries).""" + +toolchain = {'name': 'intel', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://pkgconfig.freedesktop.org/releases/'] + +# don't use PAX, it might break. +tar_config_opts = True + +configopts = " --with-internal-glib" + +sanity_check_paths = { + 'files': ['bin/pkg-config'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29-intel-2015b.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29-intel-2015b.eb index 7a14bc5799fec03f796fa2af75292e96203ea6ea..245547ce08d9be50b45632bf690a26db4ad10fae 100644 --- a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29-intel-2015b.eb +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29-intel-2015b.eb @@ -9,14 +9,14 @@ description = """pkg-config is a helper tool used when compiling applications an gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries).""" -# don't use PAX, it might break. -tar_config_opts = True - toolchain = {'name': 'intel', 'version': '2015b'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://pkgconfig.freedesktop.org/releases/'] +# don't use PAX, it might break. +tar_config_opts = True + configopts = " --with-internal-glib" sanity_check_paths = { diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29-intel-2016a.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..cc9d6a1ec7323073bd61b4e523b8a2c814ecb151 --- /dev/null +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29-intel-2016a.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'pkg-config' +version = '0.29' + +homepage = 'http://www.freedesktop.org/wiki/Software/pkg-config/' +description = """pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the + correct compiler options on the command line so an application can use + gcc -o test test.c `pkg-config --libs --cflags glib-2.0` + for instance, rather than hard-coding values on where to find glib (or other libraries).""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://pkgconfig.freedesktop.org/releases/'] + +# don't use PAX, it might break. +tar_config_opts = True + +configopts = " --with-internal-glib" + +sanity_check_paths = { + 'files': ['bin/pkg-config'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.1.0-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.1.0-intel-2015a-Python-2.7.9.eb new file mode 100644 index 0000000000000000000000000000000000000000..e534f029a109cf707dfccd8c07d26c5db9f0b49e --- /dev/null +++ b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.1.0-intel-2015a-Python-2.7.9.eb @@ -0,0 +1,26 @@ +easyblock = 'PythonPackage' + +name = 'pkgconfig' +version = '1.1.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://github.com/matze/pkgconfig' +description = """pkgconfig is a Python module to interface with the pkg-config command line tool""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '2.7.9'), + ('pkg-config', '0.29'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.1.0-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.1.0-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..5280c703197d218db6e08fe818a95844549840f1 --- /dev/null +++ b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.1.0-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,26 @@ +easyblock = 'PythonPackage' + +name = 'pkgconfig' +version = '1.1.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://github.com/matze/pkgconfig' +description = """pkgconfig is a Python module to interface with the pkg-config command line tool""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '2.7.10'), + ('pkg-config', '0.29'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.1.0-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.1.0-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..591418bb3891cf32d4e6a52ed73da0a22accf396 --- /dev/null +++ b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.1.0-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,26 @@ +easyblock = 'PythonPackage' + +name = 'pkgconfig' +version = '1.1.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://github.com/matze/pkgconfig' +description = """pkgconfig is a Python module to interface with the pkg-config command line tool""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '2.7.11'), + ('pkg-config', '0.29'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.1.0-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.1.0-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..6fb647d4b858fcfbe8db19f91d0ae52de262911a --- /dev/null +++ b/easybuild/easyconfigs/p/pkgconfig/pkgconfig-1.1.0-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,26 @@ +easyblock = 'PythonPackage' + +name = 'pkgconfig' +version = '1.1.0' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'http://github.com/matze/pkgconfig' +description = """pkgconfig is a Python module to interface with the pkg-config command line tool""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '2.7.11'), + ('pkg-config', '0.29'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/p/popt/popt-1.14-GCC-4.8.2.eb b/easybuild/easyconfigs/p/popt/popt-1.14-GCC-4.8.2.eb index 0b1a4ed316b77439698d51fe51d735e503293ca8..24c87fbd089624b2f7b4c6cf227fa079d794afb2 100644 --- a/easybuild/easyconfigs/p/popt/popt-1.14-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/p/popt/popt-1.14-GCC-4.8.2.eb @@ -13,8 +13,8 @@ sources = [SOURCE_TAR_GZ] sanity_check_paths = { 'files': ['include/popt.h', - ('lib/libpopt.a', 'lib64/libpopt.a'), - ('lib/libpopt.so', 'lib64/libpopt.so')], + ('lib/libpopt.a', 'lib64/libpopt.a'), + ('lib/libpopt.%s' % SHLIB_EXT, 'lib64/libpopt.%s' % SHLIB_EXT)], 'dirs': [], } diff --git a/easybuild/easyconfigs/p/popt/popt-1.14-iccifort-2015.1.133.eb b/easybuild/easyconfigs/p/popt/popt-1.14-iccifort-2015.1.133.eb index 5a0c5612917e4a6f9a699defe6e09868741cf4fe..59c5ad2adf590864716c35d1aaafa8478f71a5df 100644 --- a/easybuild/easyconfigs/p/popt/popt-1.14-iccifort-2015.1.133.eb +++ b/easybuild/easyconfigs/p/popt/popt-1.14-iccifort-2015.1.133.eb @@ -5,7 +5,7 @@ version = '1.14' homepage = "http://freecode.com/projects/popt" description = """Popt is a C library for parsing command line parameters.""" -toolchain = {'name': 'iccifort', 'version': '2015.1.133'} +toolchain = {'name': 'iccifort', 'version': '2015.1.133'} source_urls = ['http://rpm5.org/files/popt/'] @@ -13,8 +13,8 @@ sources = [SOURCE_TAR_GZ] sanity_check_paths = { 'files': ['include/popt.h', - ('lib/libpopt.a', 'lib64/libpopt.a'), - ('lib/libpopt.so', 'lib64/libpopt.so')], + ('lib/libpopt.a', 'lib64/libpopt.a'), + ('lib/libpopt.%s' % SHLIB_EXT, 'lib64/libpopt.%s' % SHLIB_EXT)], 'dirs': [], } diff --git a/easybuild/easyconfigs/p/popt/popt-1.16-GCC-4.9.2.eb b/easybuild/easyconfigs/p/popt/popt-1.16-GCC-4.9.2.eb index a64a52cc7ff76355ec8b74e2786b41454e6254d7..fe0e0481dc8b92ea29703adcaf56d83bafe71fdc 100644 --- a/easybuild/easyconfigs/p/popt/popt-1.16-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/p/popt/popt-1.16-GCC-4.9.2.eb @@ -1,7 +1,7 @@ easyblock = 'ConfigureMake' name = 'popt' -version = "1.16" +version = "1.16" homepage = "http://freecode.com/projects/popt" description = """Popt is a C library for parsing command line parameters.""" @@ -10,17 +10,16 @@ toolchain = {'name': 'GCC', 'version': '4.9.2'} source_urls = ['http://rpm5.org/files/popt/'] sources = [SOURCE_TAR_GZ] -#see if this fixes the assembly language fauilure +# see if this fixes the assembly language fauilure toolchainopts = {'optarch': False} sanity_check_paths = { 'files': ['include/popt.h', - ('lib/libpopt.a', 'lib64/libpopt.a'), - ('lib/libpopt.so', 'lib64/libpopt.so')], + ('lib/libpopt.a', 'lib64/libpopt.a'), + ('lib/libpopt.%s' % SHLIB_EXT, 'lib64/libpopt.%s' % SHLIB_EXT)], 'dirs': [], } maxparallel = 1 moduleclass = 'lib' - diff --git a/easybuild/easyconfigs/p/pplacer/pplacer-1.1.alpha16-ictce-5.5.0-OCaml-4.01.0.eb b/easybuild/easyconfigs/p/pplacer/pplacer-1.1.alpha16-ictce-5.5.0-OCaml-4.01.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..67fa1882a40aadc45799f6208c72b8ec0c7bb61f --- /dev/null +++ b/easybuild/easyconfigs/p/pplacer/pplacer-1.1.alpha16-ictce-5.5.0-OCaml-4.01.0.eb @@ -0,0 +1,38 @@ +name = 'pplacer' +version = '1.1.alpha16' + +homepage = 'http://matsen.fhcrc.org/pplacer/' +description = """Pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic + likelihood or posterior probability according to a reference alignment. Pplacer is designed to be fast, to give + useful information about uncertainty, and to offer advanced visualization and downstream analysis.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = [ + 'https://github.com/matsen/pplacer/archive/', + 'https://github.com/matsen/pplacer-opam-repository/archive/', +] +sources = [ + 'v%(version)s.tar.gz', + 'ba5e766.tar.gz', # pplacer-opam-repository (20151002) +] + +patches = ['pplacer-%(version)s_fix-sqlite3-req-pkg.patch'] + +ocaml = 'OCaml' +ocamlver = '4.01.0' +versionsuffix = '-%s-%s' % (ocaml, ocamlver) +dependencies = [ + (ocaml, ocamlver), + ('zlib', '1.2.7'), # for CamlZIP OCaml package + ('GSL', '1.16'), # for GSL-OCaml package + ('SQLite', '3.8.6'), # for SQLite3-OCaml package +] +builddependencies = [ + ('M4', '1.4.17'), +] + +# parallel build tends to break +parallel = 1 + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/p/pplacer/pplacer-1.1.alpha16_fix-sqlite3-req-pkg.patch b/easybuild/easyconfigs/p/pplacer/pplacer-1.1.alpha16_fix-sqlite3-req-pkg.patch new file mode 100644 index 0000000000000000000000000000000000000000..6bb8c7268d272f967cd5da715b677fe5e1eaabaf --- /dev/null +++ b/easybuild/easyconfigs/p/pplacer/pplacer-1.1.alpha16_fix-sqlite3-req-pkg.patch @@ -0,0 +1,11 @@ +fix name of required sqlite3-ocaml package +see also https://github.com/matsen/pplacer/commit/4ae1c6803486a6460a776b6807657a3bcc4005da +--- opam-requirements.txt.orig 2015-10-06 16:38:42.246475661 +0200 ++++ opam-requirements.txt 2015-10-06 16:38:50.586708932 +0200 +@@ -4,5 +4,5 @@ + mcl.12-068oasis3 + batteries.2.1.0 + ocaml-gsl.0.6.3 +-sqlite3-ocaml.1.6.3 ++sqlite3.1.6.3 + camlzip.1.05 diff --git a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.4.10.eb b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.4.10.eb index 8346a5cd7ae54f5cd2bc05e11e620ce52cad0316..dacbb816a73bd4b3f209dcc7734044df662dd439 100644 --- a/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/p/printproto/printproto-1.0.5-goolf-1.4.10.eb @@ -6,7 +6,7 @@ version = '1.0.5' homepage = 'http://xorg.freedesktop.org/' description = """X.org PrintProto protocol headers.""" -source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'goolf', 'version': '1.4.10'} diff --git a/easybuild/easyconfigs/p/pscom/pscom-5.0.43-GCC-4.8.2.eb b/easybuild/easyconfigs/p/pscom/pscom-5.0.43-GCC-4.8.2.eb index 1c59dd3dd2dcfa4da0c4aba1a6e203e1e9351ce7..65a73afe7df4b82ac028ab13111d788786832470 100644 --- a/easybuild/easyconfigs/p/pscom/pscom-5.0.43-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/p/pscom/pscom-5.0.43-GCC-4.8.2.eb @@ -15,7 +15,7 @@ sources = ['%(version)s-1.zip'] dependencies = [('popt', '1.14')] sanity_check_paths = { - 'files': ['include/pscom.h', ('lib/libpscom.so', 'lib64/libpscom.so')], + 'files': ['include/pscom.h', ('lib/libpscom.%s' % SHLIB_EXT, 'lib64/libpscom.%s' % SHLIB_EXT)], 'dirs': [], } diff --git a/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-GCC-4.9.2.eb b/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-GCC-4.9.2.eb index dfe678ff567869e10d0180b48dd7579c1c18e92f..b69d0d92ddccf8c0bbdf11f201c49c19bf7b3da9 100644 --- a/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-GCC-4.9.2.eb @@ -13,9 +13,8 @@ dependencies = [('popt', '1.16')] sanity_check_paths = { - 'files': ['include/pscom.h', ('lib/libpscom.so', 'lib64/libpscom.so')], - 'dirs': [], + 'files': ['include/pscom.h', ('lib/libpscom.%s' % SHLIB_EXT, 'lib64/libpscom.%s' % SHLIB_EXT)], + 'dirs': [], } moduleclass = 'lib' - diff --git a/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-iccifort-2015.1.133.eb b/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-iccifort-2015.1.133.eb index 3e93e9239a3d70f4b376792b8d92cd980d1811b7..7da1e4a7f7181be6c837d49db84c243690fe24fb 100644 --- a/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-iccifort-2015.1.133.eb +++ b/easybuild/easyconfigs/p/pscom/pscom-5.0.44-1-iccifort-2015.1.133.eb @@ -4,7 +4,7 @@ name = 'pscom' version = '5.0.44-1' homepage = 'http://www.par-tec.com' description = """ParaStation is a robust and efficient cluster middleware, consisting of a high-performance communication layer (MPI) and a sophisticated management layer.""" -toolchain = {'name': 'iccifort', 'version': '2015.1.133'} +toolchain = {'name': 'iccifort', 'version': '2015.1.133'} source_urls = ['https://github.com/ParaStation/%(name)s/archive/'] @@ -13,8 +13,7 @@ sources = ['%(version)s.zip'] dependencies = [('popt', '1.14')] sanity_check_paths = { - 'files': ['include/pscom.h', ('lib/libpscom.so', 'lib64/libpscom.so')], - 'dirs': [], + 'files': ['include/pscom.h', ('lib/libpscom.%s' % SHLIB_EXT, 'lib64/libpscom.%s' % SHLIB_EXT)], + 'dirs': [], } moduleclass = 'tools' - diff --git a/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-GCC-4.9.2.eb b/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-GCC-4.9.2.eb index c310b1fc807c1ce68f8252a762add35bb5684329..3e04c7775f5125de2a275b0ca6cfa32f8275ea86 100644 --- a/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-GCC-4.9.2.eb @@ -8,10 +8,14 @@ description = """ParaStation MPI as part of the ParaStationV5 cluster suite prov toolchain = {'name': 'GCC', 'version': '4.9.2'} -sources = ['%(version)s.tar.gz', - 'openpa-1.0.4.tar.gz'] -source_urls = ['https://github.com/ParaStation/psmpi2/archive/' - ,'https://trac.mpich.org/projects/openpa/raw-attachment/wiki/Downloads/'] +sources = [ + '%(version)s.tar.gz', + 'openpa-1.0.4.tar.gz', +] +source_urls = [ + 'https://github.com/ParaStation/psmpi2/archive/', + 'https://trac.mpich.org/projects/openpa/raw-attachment/wiki/Downloads/', +] # MPICH configure wants F90/F90FLAGS to be renamed to FC/FCFLAGS. preconfigopts = 'export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset F90FLAGS; ' @@ -19,25 +23,20 @@ preconfigopts = 'export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset # Build shared libraries configopts = '--with-confset=gcc --enable-shared --enable-static' -dependencies = [('pscom' , '5.0.44-1')] - - - +dependencies = [('pscom', '5.0.44-1')] sanity_check_paths = { - 'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', - 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', - ('lib/libfmpich.a', 'lib64/libfmpich.a'), - ('lib/libfmpich.so', 'lib64/libfmpich.so'), - ('lib/libmpich.a', 'lib64/libmpich.a'), - ('lib/libmpich.so', 'lib64/libmpich.so'), - ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), - ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), - ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), - ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], - 'dirs': [], + 'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', + 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', + ('lib/libfmpich.a', 'lib64/libfmpich.a'), + ('lib/libfmpich.%s' % SHLIB_EXT, 'lib64/libfmpich.%s' % SHLIB_EXT), + ('lib/libmpich.a', 'lib64/libmpich.a'), + ('lib/libmpich.%s' % SHLIB_EXT, 'lib64/libmpich.%s' % SHLIB_EXT), + ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), + ('lib/libmpichcxx.%s' % SHLIB_EXT, 'lib64/libmpichcxx.%s' % SHLIB_EXT), + ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), + ('lib/libmpichf90.%s' % SHLIB_EXT, 'lib64/libmpichf90.%s' % SHLIB_EXT)], + 'dirs': [], } - moduleclass = 'mpi' - diff --git a/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-iccifort-2015.1.133.eb b/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-iccifort-2015.1.133.eb index 2989b452c198dec2813d48ce1063c317144e8296..4bb1ff6f7abd3013b7fc5e2d052d19d260129e2f 100644 --- a/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-iccifort-2015.1.133.eb +++ b/easybuild/easyconfigs/p/psmpi/psmpi-5.1.0-1-iccifort-2015.1.133.eb @@ -8,10 +8,14 @@ description = """ParaStation MPI as part of the ParaStationV5 cluster suite prov toolchain = {'name': 'iccifort', 'version': '2015.1.133'} -sources = ['%(version)s.tar.gz', - 'openpa-1.0.4.tar.gz'] -source_urls = ['https://github.com/ParaStation/psmpi2/archive/' - ,'https://trac.mpich.org/projects/openpa/attachment/wiki/Downloads'] +sources = [ + '%(version)s.tar.gz', + 'openpa-1.0.4.tar.gz', +] +source_urls = [ + 'https://github.com/ParaStation/psmpi2/archive/', + 'https://trac.mpich.org/projects/openpa/attachment/wiki/Downloads', +] # MPICH configure wants F90/F90FLAGS to be renamed to FC/FCFLAGS. preconfigopts = 'export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset F90FLAGS; ' @@ -19,22 +23,20 @@ preconfigopts = 'export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset # Build shared libraries configopts = '--with-confset=intel --enable-shared --enable-static --enable-romio --enable-mpe' -dependencies = [('pscom' , '5.0.44-1')] - +dependencies = [('pscom', '5.0.44-1')] sanity_check_paths = { - 'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', - 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', - ('lib/libfmpich.a', 'lib64/libfmpich.a'), - ('lib/libfmpich.so', 'lib64/libfmpich.so'), - ('lib/libmpich.a', 'lib64/libmpich.a'), - ('lib/libmpich.so', 'lib64/libmpich.so'), - ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), - ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), - ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), - ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], - 'dirs': [], + 'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', + 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', + ('lib/libfmpich.a', 'lib64/libfmpich.a'), + ('lib/libfmpich.%s' % SHLIB_EXT, 'lib64/libfmpich.%s' % SHLIB_EXT), + ('lib/libmpich.a', 'lib64/libmpich.a'), + ('lib/libmpich.%s' % SHLIB_EXT, 'lib64/libmpich.%s' % SHLIB_EXT), + ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), + ('lib/libmpichcxx.%s' % SHLIB_EXT, 'lib64/libmpichcxx.%s' % SHLIB_EXT), + ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), + ('lib/libmpichf90.%s' % SHLIB_EXT, 'lib64/libmpichf90.%s' % SHLIB_EXT)], + 'dirs': [], } moduleclass = 'mpi' - diff --git a/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2-mt.eb b/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2-mt.eb index 86c6b1c0045cb906be044849c2d1df9940f1fa49..f88f324c9e4f0b509f8109b7ad1ef4770d3424a3 100644 --- a/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2-mt.eb +++ b/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2-mt.eb @@ -33,18 +33,17 @@ prebuildopts = "echo '%(version)s-1' > VERSION && " preinstallopts = prebuildopts sanity_check_paths = { - 'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', - 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', + 'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', + 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', ('lib/libfmpich.a', 'lib64/libfmpich.a'), - ('lib/libfmpich.so', 'lib64/libfmpich.so'), + ('lib/libfmpich.%s' % SHLIB_EXT, 'lib64/libfmpich.%s' % SHLIB_EXT), ('lib/libmpich.a', 'lib64/libmpich.a'), - ('lib/libmpich.so', 'lib64/libmpich.so'), + ('lib/libmpich.%s' % SHLIB_EXT, 'lib64/libmpich.%s' % SHLIB_EXT), ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), - ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), + ('lib/libmpichcxx.%s' % SHLIB_EXT, 'lib64/libmpichcxx.%s' % SHLIB_EXT), ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), - ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], + ('lib/libmpichf90.%s' % SHLIB_EXT, 'lib64/libmpichf90.%s' % SHLIB_EXT)], 'dirs': [], } moduleclass = 'mpi' - diff --git a/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2.eb b/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2.eb index a095dc02b4ed17685ef776a07dd1be60ab969e6d..21643d2e8189651c48c0373794548065ca2fb03a 100644 --- a/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/p/psmpi2/psmpi2-5.0.29-GCC-4.8.2.eb @@ -32,18 +32,17 @@ prebuildopts = "echo '%(version)s-1' > VERSION && " preinstallopts = prebuildopts sanity_check_paths = { - 'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', - 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', + 'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', + 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', ('lib/libfmpich.a', 'lib64/libfmpich.a'), - ('lib/libfmpich.so', 'lib64/libfmpich.so'), + ('lib/libfmpich.%s' % SHLIB_EXT, 'lib64/libfmpich.%s' % SHLIB_EXT), ('lib/libmpich.a', 'lib64/libmpich.a'), - ('lib/libmpich.so', 'lib64/libmpich.so'), + ('lib/libmpich.%s' % SHLIB_EXT, 'lib64/libmpich.%s' % SHLIB_EXT), ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), - ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), + ('lib/libmpichcxx.%s' % SHLIB_EXT, 'lib64/libmpichcxx.%s' % SHLIB_EXT), ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), - ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], + ('lib/libmpichf90.%s' % SHLIB_EXT, 'lib64/libmpichf90.%s' % SHLIB_EXT)], 'dirs': [], } moduleclass = 'mpi' - diff --git a/easybuild/easyconfigs/p/pyTables/pyTables-2.4.0-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/p/pyTables/pyTables-2.4.0-ictce-4.1.13-Python-2.7.3.eb index c5aa1dcd66798f5be200ada97bde0201a21a01a6..ee64c3384a2ce77a9136d2e8b510efb054257a3a 100644 --- a/easybuild/easyconfigs/p/pyTables/pyTables-2.4.0-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/p/pyTables/pyTables-2.4.0-ictce-4.1.13-Python-2.7.3.eb @@ -24,16 +24,16 @@ pythonshortver = '.'.join(pythonver.split('.')[0:2]) versionsuffix = '-%s-%s' % (python, pythonver) dependencies = [ - (python, pythonver), - ('numexpr', '2.0.1', versionsuffix), - ('HDF5', '1.8.10', '-gpfs'), - ('Cython', '0.16', versionsuffix), - ] + (python, pythonver), + ('numexpr', '2.0.1', versionsuffix), + ('HDF5', '1.8.10', '-gpfs'), + ('Cython', '0.16', versionsuffix), +] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['nctoh5', 'ptdump', 'ptrepack']], - 'dirs': ['lib/python%s/site-packages/tables' % pythonshortver] - } + 'files': ['bin/%s' % x for x in ['nctoh5', 'ptdump', 'ptrepack']], + 'dirs': ['lib/python%s/site-packages/tables' % pythonshortver] +} options = {'modulename': 'tables'} diff --git a/easybuild/easyconfigs/p/pyTables/pyTables-3.2.2-fix-libs.patch b/easybuild/easyconfigs/p/pyTables/pyTables-3.2.2-fix-libs.patch new file mode 100644 index 0000000000000000000000000000000000000000..08b67b94daa6077d03a438f9e1bf1141ba2721ac --- /dev/null +++ b/easybuild/easyconfigs/p/pyTables/pyTables-3.2.2-fix-libs.patch @@ -0,0 +1,17 @@ +# pyTables expects that LIBS is a list of library names and will add +# a -l by itself. +# ward.poelmans@ugent.be +diff -ur PyTables-v.3.2.2/setup.py PyTables-v.3.2.2.new/setup.py +--- PyTables-v.3.2.2/setup.py 2015-09-22 05:54:51.000000000 +0200 ++++ PyTables-v.3.2.2.new/setup.py 2016-01-11 15:38:07.512454000 +0100 +@@ -433,6 +433,10 @@ + # is not a good idea. + CFLAGS = os.environ.get('CFLAGS', '').split() + LIBS = os.environ.get('LIBS', '').split() ++for idx, lib in enumerate(LIBS): ++ if lib.startswith("-l"): ++ LIBS[idx] = lib.replace("-l", "") ++ + # We start using pkg-config since some distributions are putting HDF5 + # (and possibly other libraries) in exotic locations. See issue #442. + if distutils.spawn.find_executable(PKG_CONFIG): diff --git a/easybuild/easyconfigs/p/pyTables/pyTables-3.2.2-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/p/pyTables/pyTables-3.2.2-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..c7500dde1e317bc1a9fe958c1b870f7fbb7f5ccd --- /dev/null +++ b/easybuild/easyconfigs/p/pyTables/pyTables-3.2.2-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,42 @@ +easyblock = "PythonPackage" + +name = 'pyTables' +version = '3.2.2' + +homepage = 'http://www.pytables.org' +description = """PyTables is a package for managing hierarchical datasets and designed to efficiently and easily cope + with extremely large amounts of data. PyTables is built on top of the HDF5 library, using the Python language and the + NumPy package. It features an object-oriented interface that, combined with C extensions for the performance-critical + parts of the code (generated using Cython), makes it a fast, yet extremely easy to use tool for interactively browse, + process and search very large amounts of data. One important feature of PyTables is that it optimizes memory and disk + resources so that data takes much less space (specially if on-flight compression is used) than other solutions such as + relational or object oriented databases.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'usempi': True} + +source_urls = ['https://github.com/PyTables/PyTables/archive/'] +sources = ['v.%(version)s.tar.gz'] + +patches = ['pyTables-%(version)s-fix-libs.patch'] + +python = 'Python' +pythonver = '2.7.10' +pythonshortver = '.'.join(pythonver.split('.')[0:2]) +versionsuffix = '-%s-%s' % (python, pythonver) + +dependencies = [ + (python, pythonver), + ('numpy', '1.10.4', versionsuffix), + ('numexpr', '2.4.6', versionsuffix), + ('HDF5', '1.8.13'), +] + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['pt2to3', 'ptdump', 'ptrepack']], + 'dirs': ['lib/python%s/site-packages' % pythonshortver], +} + +options = {'modulename': 'tables'} + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/p/pycosat/pycosat-0.6.1-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/p/pycosat/pycosat-0.6.1-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..cea252567b519f62ecc304bbcb174c378599f761 --- /dev/null +++ b/easybuild/easyconfigs/p/pycosat/pycosat-0.6.1-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,29 @@ +easyblock = 'PythonPackage' + +name = 'pycosat' +version = '0.6.1' + +homepage = 'https://pypi.python.org/pypi/pycosat' +description = """pycosat provides efficient Python bindings to picosat on the C level, i.e. when importing pycosat, + the picosat solver becomes part of the Python process itself.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +python = 'Python' +pyver = '2.7.10' +versionsuffix = '-%s-%s' % (python, pyver) + +dependencies = [ + (python, pyver), +] + +pyshortver = '.'.join(pyver.split('.')[:2]) +sanity_check_paths = { + 'files': ['lib/python%s/site-packages/pycosat.so' % pyshortver], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/pyringe/pyringe-1.0.2-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/p/pyringe/pyringe-1.0.2-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..a162402911d42003dc800dde3c2ea7ee01585c4a --- /dev/null +++ b/easybuild/easyconfigs/p/pyringe/pyringe-1.0.2-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,26 @@ +easyblock = 'PythonPackage' + +name = 'pyringe' +version = '1.0.2' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/google/pyringe' +description = """Debugger capable of attaching to and injecting code into python processes.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'usempi': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('Python', '2.7.11'), + ('GDB', '7.10.1', versionsuffix), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/q/QLogicMPI/QLogicMPI-2.9-926.1005_rhel5_qlc.eb b/easybuild/easyconfigs/q/QLogicMPI/QLogicMPI-2.9-926.1005_rhel5_qlc.eb index f21ebd8d6387818bc9eb02e369f9a8e2a84ea12b..657fc8204a524205a8ae06346b58a31fb8d60e3a 100644 --- a/easybuild/easyconfigs/q/QLogicMPI/QLogicMPI-2.9-926.1005_rhel5_qlc.eb +++ b/easybuild/easyconfigs/q/QLogicMPI/QLogicMPI-2.9-926.1005_rhel5_qlc.eb @@ -15,12 +15,12 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} # download the rpm directly or get it from the .bin file and extract it with ./nameoffile.bin -x and type yes sources = [ - 'mpi-benchmark-%s.x86_64.rpm' % version, - 'mpi-libs-%s.x86_64.rpm' % version, - 'mpi-frontend-%s.i386.rpm' % version, - 'qlogic-mpi-register-0.1.0-926.1005_rhel5_qlc.noarch.rpm', - 'mpi-devel-%s.noarch.rpm'%version - ] + 'mpi-benchmark-%(version)s.x86_64.rpm', + 'mpi-libs-%(version)s.x86_64.rpm', + 'mpi-frontend-%(version)s.i386.rpm', + 'qlogic-mpi-register-0.1.0-926.1005_rhel5_qlc.noarch.rpm', + 'mpi-devel-%(version)s.noarch.rpm', +] makesymlinks = ['usr/lib', 'usr/lib64', 'usr/include', 'usr/bin'] diff --git a/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-ictce-7.1.2.eb b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-ictce-7.1.2.eb index 625317ad022b5ae257eea45986813818f1ee4ba7..5c40951ce1f4577e7d338982dc9451ca63ba9f0a 100644 --- a/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-ictce-7.1.2.eb @@ -23,7 +23,7 @@ patches = [ builddependencies = [('CMake', '2.8.12')] sanity_check_paths = { - 'files': ['bin/qhull', 'lib/libqhull.so', 'lib/pkgconfig/qhull.pc'], + 'files': ['bin/qhull', 'lib/libqhull.%s' % SHLIB_EXT, 'lib/pkgconfig/qhull.pc'], 'dirs': [], } diff --git a/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2014b.eb b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2014b.eb index 617a67c44d822dcbaf051b343a83b26b5c14e888..a562fe39d80732810c74d125bb3ce62724c0e385 100644 --- a/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2014b.eb +++ b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2014b.eb @@ -23,7 +23,7 @@ patches = [ builddependencies = [('CMake', '2.8.12')] sanity_check_paths = { - 'files': ['bin/qhull', 'lib/libqhull.so', 'lib/pkgconfig/qhull.pc'], + 'files': ['bin/qhull', 'lib/libqhull.%s' % SHLIB_EXT, 'lib/pkgconfig/qhull.pc'], 'dirs': [], } diff --git a/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2015a.eb b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2015a.eb index 1488f628fe22f7f0fcab3b1a6e1607a6eaa497a2..78effcbf0be5eac13eb155ccce08f8ee39e480f3 100644 --- a/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2015a.eb +++ b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2015a.eb @@ -23,7 +23,7 @@ patches = [ builddependencies = [('CMake', '3.2.1', '', ('GCC', '4.9.2'))] sanity_check_paths = { - 'files': ['bin/qhull', 'lib/libqhull.so', 'lib/pkgconfig/qhull.pc'], + 'files': ['bin/qhull', 'lib/libqhull.%s' % SHLIB_EXT, 'lib/pkgconfig/qhull.pc'], 'dirs': [], } diff --git a/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2015b.eb b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2015b.eb index 8544695ac424bffdea87d314db759609d270c708..d232942c8a3d4ddc1a70ccca3c8e68eed4724720 100644 --- a/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2015b.eb +++ b/easybuild/easyconfigs/q/Qhull/Qhull-2012.1-intel-2015b.eb @@ -23,7 +23,7 @@ patches = [ builddependencies = [('CMake', '3.2.1', '', ('GNU', '4.9.3-2.25'))] sanity_check_paths = { - 'files': ['bin/qhull', 'lib/libqhull.so', 'lib/pkgconfig/qhull.pc'], + 'files': ['bin/qhull', 'lib/libqhull.%s' % SHLIB_EXT, 'lib/pkgconfig/qhull.pc'], 'dirs': [], } diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.5-gmpolf-1.4.8.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.5-gmpolf-1.4.8.eb index 6abe0d811d8c00c835f93de23f247811415d9769..feb87dfbe1d3b557cf922a43af4676ff71ead2e6 100644 --- a/easybuild/easyconfigs/q/Qt/Qt-4.8.5-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.5-gmpolf-1.4.8.eb @@ -4,7 +4,7 @@ version = '4.8.5' homepage = 'http://qt.io/' description = "Qt is a comprehensive cross-platform C++ application framework." -toolchain = {'name': 'gmpolf', 'version': '1.4.8'} +toolchain = {'name': 'gmpolf', 'version': '1.4.8'} source_urls = [ 'http://download.qt.io/official_releases/qt/%(version_major_minor)s/%(version)s/', @@ -14,10 +14,10 @@ sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] dependencies = [('GLib', '2.34.3')] -configopts="-confirm-license -opensource -silent" +configopts = "-confirm-license -opensource -silent" sanity_check_paths = { - 'files': ['lib/libQtCore.so'], - 'dirs': [], + 'files': ['lib/libQtCore.%s' % SHLIB_EXT], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.5-goolf-1.5.14.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.5-goolf-1.5.14.eb index 7bcfcdfee8aa4c73f770b512c2d457e0df2a0369..1d7ae2908bf2da8a3d0c867f3ab655e52e4f1582 100644 --- a/easybuild/easyconfigs/q/Qt/Qt-4.8.5-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.5-goolf-1.5.14.eb @@ -4,7 +4,7 @@ version = '4.8.5' homepage = 'http://qt.io/' description = "Qt is a comprehensive cross-platform C++ application framework." -toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchain = {'name': 'goolf', 'version': '1.5.14'} source_urls = [ 'http://download.qt.io/official_releases/qt/%(version_major_minor)s/%(version)s/', @@ -14,10 +14,10 @@ sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] dependencies = [('GLib', '2.34.3')] -configopts="-confirm-license -opensource -silent" +configopts = "-confirm-license -opensource -silent" sanity_check_paths = { - 'files': ['lib/libQtCore.so'], - 'dirs': [], + 'files': ['lib/libQtCore.%s' % SHLIB_EXT], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/q/Qt/Qt-4.8.7-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/q/Qt/Qt-4.8.7-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..9f56d8e9fbf5ac7e29a754f288ada979ec2511af --- /dev/null +++ b/easybuild/easyconfigs/q/Qt/Qt-4.8.7-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,25 @@ +name = 'Qt' +version = '4.8.7' +versionsuffix = '-Python-2.7.11' + +homepage = 'http://qt.io/' +description = "Qt is a comprehensive cross-platform C++ application framework." + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [ + 'http://download.qt.io/official_releases/qt/%(version_major_minor)s/%(version)s/', + 'http://download.qt.io/archive/qt/%(version_major_minor)s/%(version)s/' +] +sources = ['%(namelower)s-everywhere-opensource-src-%(version)s.tar.gz'] + +patches = ['Qt-%(version)s_phonon-export.patch'] + +dependencies = [ + ('GLib', '2.46.0'), + ('libX11', '1.6.3', versionsuffix), + ('libXt', '1.1.5', versionsuffix), + ('libXrender', '0.9.9', versionsuffix), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/q/Qt5/Qt5-5.5.1-intel-2015b-Mesa-11.0.8.eb b/easybuild/easyconfigs/q/Qt5/Qt5-5.5.1-intel-2015b-Mesa-11.0.8.eb new file mode 100644 index 0000000000000000000000000000000000000000..037b082375beb88b555303f644ce0b2addc1fbd7 --- /dev/null +++ b/easybuild/easyconfigs/q/Qt5/Qt5-5.5.1-intel-2015b-Mesa-11.0.8.eb @@ -0,0 +1,43 @@ +easyblock = 'EB_Qt' + +name = 'Qt5' +version = '5.5.1' +mesaver = '11.0.8' +versionsuffix = '-Mesa-%s' % mesaver + +homepage = 'http://qt.io/' +description = "Qt is a comprehensive cross-platform C++ application framework." + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [ + 'http://download.qt.io/official_releases/qt/%(version_major_minor)s/%(version)s/single/', + 'http://download.qt.io/archive/qt/%(version_major_minor)s/%(version)s/single/' +] +sources = ['qt-everywhere-opensource-src-%(version)s.tar.xz'] + +pysuff = '-Python-2.7.11' +dependencies = [ + ('GLib', '2.46.0'), + ('libX11', '1.6.3', pysuff), + ('libXt', '1.1.5', pysuff), + ('libXi', '1.7.4', pysuff), + ('xcb-util', '0.4.0', pysuff), + ('xcb-util-image', '0.4.0', pysuff), + ('xcb-util-keysyms', '0.4.0', pysuff), + ('xcb-util-renderutil', '0.3.9', pysuff), + ('xcb-util-wm', '0.4.1', pysuff), + ('libxkbcommon', '0.5.0', pysuff), + ('libXrender', '0.9.9', pysuff), + ('fontconfig', '2.11.94'), + ('freetype', '2.6.1'), + ('libXfixes', '5.0.1'), + ('libXcursor', '1.1.14', pysuff), + ('libXinerama', '1.1.3', pysuff), + ('libXrandr', '1.5.0', pysuff), + ('libpng', '1.6.18'), + ('Mesa', mesaver, pysuff), + ('libGLU', '9.0.0', versionsuffix), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.3.0.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.3.0.eb index 37bdd94912bf8d2c0d7bb1c1b5d216c4897a8dd9..09c9e0166c9f9849e559efbf09e97eda36140ee9 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.3.0.eb @@ -15,7 +15,7 @@ sources = [ 'wannier90-1.2.tar.gz', 'want-2.3.0.tar.gz', 'yambo-3.2.1-r.448.tar.gz', - ] +] source_urls = [ 'http://www.qe-forge.org/gf/download/frsrelease/64/96/', # espresso-4.2.tar.gz 'http://www.qe-forge.org/gf/download/frsrelease/64/97/', # wannier90-1.2.tar.gz diff --git a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.5.0.eb b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.5.0.eb index 6b0604d138b44bbb3e87b98ded07e5f9eb8e2457..e7e19c03430fc1ce2e08e993924ca41b61ef194a 100644 --- a/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/q/QuantumESPRESSO/QuantumESPRESSO-4.2-ictce-5.5.0.eb @@ -15,7 +15,7 @@ sources = [ 'wannier90-1.2.tar.gz', 'want-2.3.0.tar.gz', 'yambo-3.2.1-r.448.tar.gz', - ] +] source_urls = [ 'http://www.qe-forge.org/gf/download/frsrelease/64/96/', # espresso-4.2.tar.gz 'http://www.qe-forge.org/gf/download/frsrelease/64/97/', # wannier90-1.2.tar.gz diff --git a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb index 1cda3a4011f1d514226ab94990142f4236b9f2ca..e4973548b5d8599d18f6c4bb2e41e7bd60df6181 100644 --- a/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/q/Quip/Quip-1.1.8-GCC-4.8.2.eb @@ -23,7 +23,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [homepage] sanity_check_paths = { - 'files': ["bin/quip"], + 'files': ["bin/quip"], 'dirs': [] } diff --git a/easybuild/easyconfigs/q/qtop/qtop-53-1.eb b/easybuild/easyconfigs/q/qtop/qtop-53-1.eb index c04c0cb73de4a38c2afa8d7df385ff60e5fc9316..1e12105e71b928a341e95219c0fa1cea4f9cc966 100644 --- a/easybuild/easyconfigs/q/qtop/qtop-53-1.eb +++ b/easybuild/easyconfigs/q/qtop/qtop-53-1.eb @@ -27,7 +27,7 @@ sources = [SOURCE_TAR_GZ] source_urls = [homepage] sanity_check_paths = { - 'files': ["qtop"], + 'files': ["qtop"], 'dirs': [] } diff --git a/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.1-goolf-1.7.20-R-3.2.0.eb b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.1-goolf-1.7.20-R-3.2.0.eb index b172ff01378a04a83d2706c32bb475ee750f3433..1fcada16944596fe599346df24d558f40d6da926 100644 --- a/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.1-goolf-1.7.20-R-3.2.0.eb +++ b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.1-goolf-1.7.20-R-3.2.0.eb @@ -133,6 +133,12 @@ exts_list = [ ('derfinder', '1.2.1', bioconductor_options), ('polyester', '1.4.0', bioconductor_options), ('Rsubread', '1.18.0', bioconductor_options), + ('pcaMethods', '1.58.0', bioconductor_options), + ('marray', '1.46.0', bioconductor_options), + ('CGHbase', '1.28.0', bioconductor_options), + ('sigaR', '1.12.0', bioconductor_options), + ('HCsnip', '1.8.0', bioconductor_options), + ('metagenomeSeq', '1.10.0', bioconductor_options), ] modextrapaths = {'R_LIBS': ''} diff --git a/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.1-intel-2015a-R-3.2.1.eb b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.1-intel-2015a-R-3.2.1.eb index 8c43cb0960d428b83d3692bdacfa8715b35aa779..21cd4399f4322ca920a9ddc63da22231148a8338 100644 --- a/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.1-intel-2015a-R-3.2.1.eb +++ b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.1-intel-2015a-R-3.2.1.eb @@ -133,6 +133,12 @@ exts_list = [ ('derfinder', '1.2.1', bioconductor_options), ('polyester', '1.4.0', bioconductor_options), ('Rsubread', '1.18.0', bioconductor_options), + ('pcaMethods', '1.58.0', bioconductor_options), + ('marray', '1.46.0', bioconductor_options), + ('CGHbase', '1.28.0', bioconductor_options), + ('sigaR', '1.12.0', bioconductor_options), + ('HCsnip', '1.8.0', bioconductor_options), + ('metagenomeSeq', '1.10.0', bioconductor_options), ] modextrapaths = {'R_LIBS': ''} diff --git a/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.1-intel-2015b-R-3.2.1.eb b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.1-intel-2015b-R-3.2.1.eb index 3bf5e2abf4ca7feed7309dc32619918ed060f26f..c3940a90345daba21394e728149d5c7f30966841 100644 --- a/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.1-intel-2015b-R-3.2.1.eb +++ b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.1-intel-2015b-R-3.2.1.eb @@ -133,6 +133,12 @@ exts_list = [ ('derfinder', '1.2.1', bioconductor_options), ('polyester', '1.4.0', bioconductor_options), ('Rsubread', '1.18.0', bioconductor_options), + ('pcaMethods', '1.58.0', bioconductor_options), + ('marray', '1.46.0', bioconductor_options), + ('CGHbase', '1.28.0', bioconductor_options), + ('sigaR', '1.12.0', bioconductor_options), + ('HCsnip', '1.8.0', bioconductor_options), + ('metagenomeSeq', '1.10.0', bioconductor_options), ] modextrapaths = {'R_LIBS': ''} diff --git a/easybuild/easyconfigs/r/R-bundle-pbd/R-bundle-pbd-20150605-intel-2015a-R-3.1.3.eb b/easybuild/easyconfigs/r/R-bundle-pbd/R-bundle-pbd-20150605-intel-2015a-R-3.1.3.eb index dd2dee5fb47b0b515cc7cff2c35bd95bfdffbd0c..95d136f187dac836955244170ecb488f87a38238 100644 --- a/easybuild/easyconfigs/r/R-bundle-pbd/R-bundle-pbd-20150605-intel-2015a-R-3.1.3.eb +++ b/easybuild/easyconfigs/r/R-bundle-pbd/R-bundle-pbd-20150605-intel-2015a-R-3.1.3.eb @@ -32,7 +32,8 @@ ext_options = { exts_list = [ ('pbdMPI', '0.2-5', ext_options), ('pbdSLAP', '0.2-0', ext_options), - ('pbdBASE', '0.2-3', dict(ext_options.items() + [('patches', ['pbdBASE-02.3-0_ignore-BI_COMM_GLOBAL-for-intel-mpi.patch'])])), + ('pbdBASE', '0.2-3', dict(ext_options.items() + + [('patches', ['pbdBASE-02.3-0_ignore-BI_COMM_GLOBAL-for-intel-mpi.patch'])])), ('pbdDMAT', '0.2-3', ext_options), ('pbdDEMO', '0.2-0', ext_options), ('pmclust', '0.1-6', ext_options), diff --git a/easybuild/easyconfigs/r/R/R-2.15.2-goalf-1.1.0-no-OFED-bare.eb b/easybuild/easyconfigs/r/R/R-2.15.2-goalf-1.1.0-no-OFED-bare.eb index d74aef52559ce1e1732c9ab32851444684b7bf1d..da982e4bc509f9fcd7fc119253d38380eff387f4 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.2-goalf-1.1.0-no-OFED-bare.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.2-goalf-1.1.0-no-OFED-bare.eb @@ -29,8 +29,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/r/R/R-2.15.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/r/R/R-2.15.2-goalf-1.1.0-no-OFED.eb index d91d0ca1fd74fcc71ba25fec3c243c3ee402447e..576d1be2d27d1e7e2de52dc6a8bf5f69d6ff50d0 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.2-goalf-1.1.0-no-OFED.eb @@ -26,8 +26,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } @@ -42,8 +42,9 @@ ext_options = { # Bioconductor packages have a different download url bioconductor_options = { 'source_urls': [ - 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/2.11/bioc/src/contrib/'], + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.11/bioc/src/contrib/', + ], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-2.15.2-goolf-1.4.10-bare.eb b/easybuild/easyconfigs/r/R/R-2.15.2-goolf-1.4.10-bare.eb index 5a34325876a85479e5564a49e4b7b09f4a1c3fba..b12bc8e75dd03e5b2cd43aa85e88893d53fdcca7 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.2-goolf-1.4.10-bare.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.2-goolf-1.4.10-bare.eb @@ -29,8 +29,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/r/R/R-2.15.2-goolf-1.4.10.eb b/easybuild/easyconfigs/r/R/R-2.15.2-goolf-1.4.10.eb index 517c6d157a2c637e40a2e872c3e60536a210b76f..561a883aa500b17e9c741000178385520addb4f7 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.2-goolf-1.4.10.eb @@ -26,8 +26,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } @@ -42,8 +42,9 @@ ext_options = { # Bioconductor packages have a different download url bioconductor_options = { 'source_urls': [ - 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/2.11/bioc/src/contrib/'], + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.11/bioc/src/contrib/', + ], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.10.eb b/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.10.eb index b2152142eb75d140691522fdb1639a06430174cd..661662e5e271a11d9de74e74dbe824839c3781e3 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.10.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.10.eb @@ -26,8 +26,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } @@ -42,8 +42,9 @@ ext_options = { # Bioconductor packages have a different download url bioconductor_options = { 'source_urls': [ - 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/2.11/bioc/src/contrib/'], + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.11/bioc/src/contrib/', + ], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.6-bare.eb b/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.6-bare.eb index a61cbb96b53260b943ab8484b92418daf9981cdd..e63fd886baf3d92dc0804ed5001658850c7b7375 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.6-bare.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.6-bare.eb @@ -29,8 +29,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.6.eb b/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.6.eb index 9414cfc682214bbba0707101af740483bbf9df0f..11da9a675a31cd129acd6a0e5bee3015ea3ee224 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.2-ictce-4.0.6.eb @@ -26,8 +26,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } @@ -42,8 +42,9 @@ ext_options = { # Bioconductor packages have a different download url bioconductor_options = { 'source_urls': [ - 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/2.11/bioc/src/contrib/'], + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.11/bioc/src/contrib/', + ], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-2.15.2-ictce-5.3.0-bare.eb b/easybuild/easyconfigs/r/R/R-2.15.2-ictce-5.3.0-bare.eb index c109319f0f1961449f9e024b079c337a67c4114b..d58882331fbc921f830f0c3d73f012b8b1d5e7ee 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.2-ictce-5.3.0-bare.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.2-ictce-5.3.0-bare.eb @@ -29,8 +29,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/r/R/R-2.15.2-ictce-5.3.0.eb b/easybuild/easyconfigs/r/R/R-2.15.2-ictce-5.3.0.eb index 4b3f70cab0d2d0b03ec611e5c23b346674bed388..8ba729ce15a2d0ba5e6c857b2a853b28432aa252 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.2-ictce-5.3.0.eb @@ -26,8 +26,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } @@ -42,8 +42,9 @@ ext_options = { # Bioconductor packages have a different download url bioconductor_options = { 'source_urls': [ - 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/2.11/bioc/src/contrib/'], + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.11/bioc/src/contrib/', + ], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-2.15.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/r/R/R-2.15.3-goalf-1.1.0-no-OFED.eb index 4434fbdf2a657a68b6b66962ad07ed079d3b5024..dacee352a9e0c3236581f20994d59927720dc466 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.3-goalf-1.1.0-no-OFED.eb @@ -26,8 +26,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } @@ -42,8 +42,9 @@ ext_options = { # Bioconductor packages have a different download url bioconductor_options = { 'source_urls': [ - 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/2.12/bioc/src/contrib/'], + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.12/bioc/src/contrib/', + ], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-2.15.3-goolf-1.4.10.eb b/easybuild/easyconfigs/r/R/R-2.15.3-goolf-1.4.10.eb index 174451bf4401e1e3127f1302e5c91da09aa6e283..e96756b81d78bcea0319b335b3cc7f7803bd5a24 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.3-goolf-1.4.10.eb @@ -26,8 +26,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } @@ -42,8 +42,9 @@ ext_options = { # Bioconductor packages have a different download url bioconductor_options = { 'source_urls': [ - 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/2.12/bioc/src/contrib/'], + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.12/bioc/src/contrib/', + ], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-2.15.3-ictce-4.1.13.eb b/easybuild/easyconfigs/r/R/R-2.15.3-ictce-4.1.13.eb index cc29570d01a9016120d92e83e38fb77fc0fb36f2..a4ff1fa8818315d1f18d83bb9868b17187926649 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.3-ictce-4.1.13.eb @@ -26,8 +26,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } @@ -42,8 +42,9 @@ ext_options = { # Bioconductor packages have a different download url bioconductor_options = { 'source_urls': [ - 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/2.12/bioc/src/contrib/'], + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.12/bioc/src/contrib/', + ], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-2.15.3-ictce-5.3.0.eb b/easybuild/easyconfigs/r/R/R-2.15.3-ictce-5.3.0.eb index 4b201ba94793d80b7e983ea2c5f46def100dfe38..86f63c2452bc02bbdeb63d281cd155027f33ad3b 100644 --- a/easybuild/easyconfigs/r/R/R-2.15.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/R/R-2.15.3-ictce-5.3.0.eb @@ -26,8 +26,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } @@ -42,8 +42,9 @@ ext_options = { # Bioconductor packages have a different download url bioconductor_options = { 'source_urls': [ - 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/2.12/bioc/src/contrib/'], + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.12/bioc/src/contrib/', + ], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-3.0.1-goalf-1.1.0-no-OFED-bare.eb b/easybuild/easyconfigs/r/R/R-3.0.1-goalf-1.1.0-no-OFED-bare.eb index 767049a9d853db63970e382d28445b5f3b883e08..ec86d62dfdfc9574fd469873777285fa0182db3e 100644 --- a/easybuild/easyconfigs/r/R/R-3.0.1-goalf-1.1.0-no-OFED-bare.eb +++ b/easybuild/easyconfigs/r/R/R-3.0.1-goalf-1.1.0-no-OFED-bare.eb @@ -29,8 +29,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/r/R/R-3.0.1-goolf-1.4.10-bare.eb b/easybuild/easyconfigs/r/R/R-3.0.1-goolf-1.4.10-bare.eb index 074bfe4e4d7403336997bc64badee040e2059ac2..a7f037b0a775d438d8489f10445ae9f8ede50e79 100644 --- a/easybuild/easyconfigs/r/R/R-3.0.1-goolf-1.4.10-bare.eb +++ b/easybuild/easyconfigs/r/R/R-3.0.1-goolf-1.4.10-bare.eb @@ -29,8 +29,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/r/R/R-3.0.1-ictce-4.0.6-bare.eb b/easybuild/easyconfigs/r/R/R-3.0.1-ictce-4.0.6-bare.eb index 0f91a27e14fbfbfb41431d3863c099794a6f45c3..c26cbbf2684d3a661f94ffa27791422e0172aed1 100644 --- a/easybuild/easyconfigs/r/R/R-3.0.1-ictce-4.0.6-bare.eb +++ b/easybuild/easyconfigs/r/R/R-3.0.1-ictce-4.0.6-bare.eb @@ -29,8 +29,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/r/R/R-3.0.1-ictce-4.1.13-bare.eb b/easybuild/easyconfigs/r/R/R-3.0.1-ictce-4.1.13-bare.eb index 22abee62210cadc66406d32d1c93ac5f4cd9932f..c7f78728ac958b0f94234bb8617f677d40755643 100644 --- a/easybuild/easyconfigs/r/R/R-3.0.1-ictce-4.1.13-bare.eb +++ b/easybuild/easyconfigs/r/R/R-3.0.1-ictce-4.1.13-bare.eb @@ -29,8 +29,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/r/R/R-3.0.1-ictce-5.3.0-bare.eb b/easybuild/easyconfigs/r/R/R-3.0.1-ictce-5.3.0-bare.eb index b1ad98874fa349430e12f94086b2a702532dc4e6..c79a8bd4e82de14e33e02d94dc88c757851d3734 100644 --- a/easybuild/easyconfigs/r/R/R-3.0.1-ictce-5.3.0-bare.eb +++ b/easybuild/easyconfigs/r/R/R-3.0.1-ictce-5.3.0-bare.eb @@ -29,8 +29,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/r/R/R-3.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/r/R/R-3.0.2-goolf-1.4.10.eb index 5280f5e5c7c20071d99185a090142dbb754d15b0..3c069b9b81e3361e63488de2b7a655a12364b9d9 100644 --- a/easybuild/easyconfigs/r/R/R-3.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/R/R-3.0.2-goolf-1.4.10.eb @@ -26,8 +26,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } @@ -42,8 +42,9 @@ ext_options = { # Bioconductor packages have a different download url bioconductor_options = { 'source_urls': [ - 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/2.13/bioc/src/contrib/'], + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.13/bioc/src/contrib/', + ], 'source_tmpl': name_tmpl, } diff --git a/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.3.0-bare.eb b/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.3.0-bare.eb index 0729ff492ebda5b407ea1280948f7d35f16ae464..8d427ebb5dd175b6f4c1ade3ea644da7577763c4 100644 --- a/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.3.0-bare.eb +++ b/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.3.0-bare.eb @@ -28,8 +28,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.3.0.eb index 8fababc35894f07a670966ee06bee0af35d74d1a..b2aa05899780218aae3e7150d360895c065804dd 100644 --- a/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.3.0.eb @@ -26,8 +26,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } @@ -42,8 +42,9 @@ ext_options = { # Bioconductor packages have a different download url bioconductor_options = { 'source_urls': [ - 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/2.13/bioc/src/contrib/'], + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.13/bioc/src/contrib/', + ], 'source_tmpl': name_tmpl, } diff --git a/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.5.0.eb b/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.5.0.eb index 549134c6cc0531791eabfa4078c1a54a69a26bc3..ee87a80c866706bc2fb264641fac3fd34040ec64 100644 --- a/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/r/R/R-3.0.2-ictce-5.5.0.eb @@ -26,8 +26,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } @@ -42,8 +42,9 @@ ext_options = { # Bioconductor packages have a different download url bioconductor_options = { 'source_urls': [ - 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/2.13/bioc/src/contrib/'], + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.13/bioc/src/contrib/', + ], 'source_tmpl': name_tmpl, } diff --git a/easybuild/easyconfigs/r/R/R-3.1.0-ictce-5.5.0.eb b/easybuild/easyconfigs/r/R/R-3.1.0-ictce-5.5.0.eb index e7c9c708cc66cb7322acc0a8e520e58144ceff2d..516a650ab376d4fca134ff3161145268634e75e3 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.0-ictce-5.5.0.eb @@ -32,8 +32,9 @@ ext_options = { # Bioconductor packages have a different download url bioconductor_options = { 'source_urls': [ - 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/2.14/bioc/src/contrib/'], + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.14/bioc/src/contrib/', + ], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.2.5-bare-mt.eb b/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.2.5-bare-mt.eb index 10cfd0f2dca745fe023fa2e721c54fef05938f43..31222cc1f7cb04d4daef9b7728fb4704f7c20c0f 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.2.5-bare-mt.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.2.5-bare-mt.eb @@ -31,8 +31,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.2.5-default-mt.eb b/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.2.5-default-mt.eb index 84b9a7bb033b553948e0716b3f4f4aba7ef06679..866b40ba8180c1e122242c636fa082869de58253 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.2.5-default-mt.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.2.5-default-mt.eb @@ -28,8 +28,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.3.5-bare-mt.eb b/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.3.5-bare-mt.eb index 810f195e932c88de6e6cb2517c61f0b515da67e7..1856c092a2890d1c3a7e12dd872a77dec852a383 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.3.5-bare-mt.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.3.5-bare-mt.eb @@ -31,8 +31,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.3.5-default-mt.eb b/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.3.5-default-mt.eb index 63bf09eeb5a6362ec51566a586b2259e45d9de3f..7fed5ef14fba86e82899b45b53e3971fc23b632d 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.3.5-default-mt.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.1-ictce-6.3.5-default-mt.eb @@ -28,8 +28,8 @@ sanity_check_paths = { ['lib64/R/include/%s' % x for x in ['Rconfig.h', 'Rdefines.h', 'Rembedded.h', 'R.h', 'Rinterface.h', 'Rinternals.h', 'Rmath.h', 'Rversion.h', 'S.h']] + - ['lib64/R/modules/%s' % x for x in ['internet.so', 'lapack.so', 'vfonts.so']] + - ['lib64/R/lib/libR.so'], + ['lib64/R/modules/%s' % x for x in ['internet.%s' % SHLIB_EXT, 'lapack.%s' % SHLIB_EXT, 'vfonts.%s' % SHLIB_EXT]] + + ['lib64/R/lib/libR.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/r/R/R-3.1.1-intel-2014b.eb b/easybuild/easyconfigs/r/R/R-3.1.1-intel-2014b.eb index 91ba061891d1a3ded8ff797335d435c0d2545196..a6b3f19e09bca80c0d2bdc0467be4b8be486dd1d 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.1-intel-2014b.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.1-intel-2014b.eb @@ -33,8 +33,9 @@ ext_options = { # Bioconductor packages have a different download url bioconductor_options = { 'source_urls': [ - 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', - 'http://www.bioconductor.org/packages/2.14/bioc/src/contrib/'], + 'http://www.bioconductor.org/packages/release/bioc/src/contrib/', + 'http://www.bioconductor.org/packages/2.14/bioc/src/contrib/', + ], 'source_tmpl': name_tmpl, } # !! order of packages is important !! diff --git a/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb index bcd67f42d0f7f5ca9ee458da04019acf9368bb39..6eb8bee5ebfa035e40808d4dd1062f681d8c90c2 100644 --- a/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.1.2-foss-2015a.eb @@ -375,4 +375,3 @@ exts_list = [ ] moduleclass = 'lang' - diff --git a/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20.eb b/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20.eb index 37f178514d9137b6c8cd7cdbcd41fa96b53ad9cc..499d383ce4fc67899016e9947a2dba34495f0130 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.0-goolf-1.7.20.eb @@ -348,6 +348,11 @@ exts_list = [ ('gdalUtils', '0.3.1', ext_options), ('pracma', '1.8.3', ext_options), ('bio3d', '2.2-2', ext_options), + ('penalized', '0.9-45', ext_options), + ('coin', '1.0-24', ext_options), + ('clusterRepro', '0.5-1.1', ext_options), + ('randomForestSRC', '2.0.7', ext_options), + ('sm', '2.2-5.4', ext_options), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.2.1-foss-2015b.eb b/easybuild/easyconfigs/r/R/R-3.2.1-foss-2015b.eb index 79832f4acc289a893b90cd99597d1a0a190a7c28..de7294123d8774da7eed64b8593342c67641671e 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.1-foss-2015b.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.1-foss-2015b.eb @@ -366,8 +366,6 @@ exts_list = [ ('SuperLearner', '2.0-15', ext_options), ('lpSolve', '5.6.13', ext_options), ('mediation', '4.4.5', ext_options), - ('lpSolve', '5.6.13', ext_options), - ('mediation', '4.4.5', ext_options), ('caret', '6.0-57', ext_options), ('adabag', '4.1', ext_options), ('parallelMap', '1.3', ext_options), @@ -383,6 +381,32 @@ exts_list = [ ('EasyABC', '1.5', ext_options), ('shape', '1.4.2', ext_options), ('tidyr', '0.3.1', ext_options), + ('whisker', '0.3-2', ext_options), + ('rstudioapi', '0.4.0', ext_options), + ('roxygen2', '5.0.1', ext_options), + ('git2r', '0.13.1', ext_options), + ('xml2', '0.1.2', ext_options), + ('rversions', '1.0.2', ext_options), + ('devtools', '1.9.1', ext_options), + ('Rook', '1.1-1', ext_options), + ('rjson', '0.2.15', ext_options), + ('Cairo', '1.5-9', ext_options), + ('RMTstat', '0.3', ext_options), + ('Lmoments', '1.1-6', ext_options), + ('distillery', '1.0-2', ext_options), + ('extRemes', '2.0-7', ext_options), + ('pixmap', '0.4-11', ext_options), + ('tkrplot', '0.0-23', ext_options), + ('misc3d', '0.8-4', ext_options), + ('multicool', '0.1-9', ext_options), + ('ks', '1.10.1', ext_options), + ('logcondens', '2.1.4', ext_options), + ('Iso', '0.0-17', ext_options), + ('penalized', '0.9-45', ext_options), + ('coin', '1.0-24', ext_options), + ('clusterRepro', '0.5-1.1', ext_options), + ('randomForestSRC', '2.0.7', ext_options), + ('sm', '2.2-5.4', ext_options), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.2.1-intel-2015a.eb b/easybuild/easyconfigs/r/R/R-3.2.1-intel-2015a.eb index 06397a454b9ed5ab2a4628b2f4c31eeda2f3ee3f..644dcc259bb3bf662021a5295cbc0bfb3662ec71 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.1-intel-2015a.eb @@ -366,8 +366,6 @@ exts_list = [ ('SuperLearner', '2.0-15', ext_options), ('lpSolve', '5.6.13', ext_options), ('mediation', '4.4.5', ext_options), - ('lpSolve', '5.6.13', ext_options), - ('mediation', '4.4.5', ext_options), ('caret', '6.0-57', ext_options), ('adabag', '4.1', ext_options), ('parallelMap', '1.3', ext_options), @@ -383,6 +381,32 @@ exts_list = [ ('EasyABC', '1.5', ext_options), ('shape', '1.4.2', ext_options), ('tidyr', '0.3.1', ext_options), + ('whisker', '0.3-2', ext_options), + ('rstudioapi', '0.4.0', ext_options), + ('roxygen2', '5.0.1', ext_options), + ('git2r', '0.13.1', ext_options), + ('xml2', '0.1.2', ext_options), + ('rversions', '1.0.2', ext_options), + ('devtools', '1.9.1', ext_options), + ('Rook', '1.1-1', ext_options), + ('rjson', '0.2.15', ext_options), + ('Cairo', '1.5-9', ext_options), + ('RMTstat', '0.3', ext_options), + ('Lmoments', '1.1-6', ext_options), + ('distillery', '1.0-2', ext_options), + ('extRemes', '2.0-7', ext_options), + ('pixmap', '0.4-11', ext_options), + ('tkrplot', '0.0-23', ext_options), + ('misc3d', '0.8-4', ext_options), + ('multicool', '0.1-9', dict(ext_options.items() + [('patches', [('multicool-0.1-9_icpc-wd308.patch', 1)])])), + ('ks', '1.10.1', ext_options), + ('logcondens', '2.1.4', ext_options), + ('Iso', '0.0-17', ext_options), + ('penalized', '0.9-45', ext_options), + ('coin', '1.0-24', ext_options), + ('clusterRepro', '0.5-1.1', ext_options), + ('randomForestSRC', '2.0.7', ext_options), + ('sm', '2.2-5.4', ext_options), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.2.1-intel-2015b.eb b/easybuild/easyconfigs/r/R/R-3.2.1-intel-2015b.eb index 77fae48b0b4e5e183eb011f18253161d95d32ca6..36f8e25856a6d6f34807aa6562e83e9ae217aaa7 100644 --- a/easybuild/easyconfigs/r/R/R-3.2.1-intel-2015b.eb +++ b/easybuild/easyconfigs/r/R/R-3.2.1-intel-2015b.eb @@ -381,6 +381,32 @@ exts_list = [ ('EasyABC', '1.5', ext_options), ('shape', '1.4.2', ext_options), ('tidyr', '0.3.1', ext_options), + ('whisker', '0.3-2', ext_options), + ('rstudioapi', '0.4.0', ext_options), + ('roxygen2', '5.0.1', ext_options), + ('git2r', '0.13.1', ext_options), + ('xml2', '0.1.2', ext_options), + ('rversions', '1.0.2', ext_options), + ('devtools', '1.9.1', ext_options), + ('Rook', '1.1-1', ext_options), + ('rjson', '0.2.15', ext_options), + ('Cairo', '1.5-9', ext_options), + ('RMTstat', '0.3', ext_options), + ('Lmoments', '1.1-6', ext_options), + ('distillery', '1.0-2', ext_options), + ('extRemes', '2.0-7', ext_options), + ('pixmap', '0.4-11', ext_options), + ('tkrplot', '0.0-23', ext_options), + ('misc3d', '0.8-4', ext_options), + ('multicool', '0.1-9', dict(ext_options.items() + [('patches', [('multicool-0.1-9_icpc-wd308.patch', 1)])])), + ('ks', '1.10.1', ext_options), + ('logcondens', '2.1.4', ext_options), + ('Iso', '0.0-17', ext_options), + ('penalized', '0.9-45', ext_options), + ('coin', '1.0-24', ext_options), + ('clusterRepro', '0.5-1.1', ext_options), + ('randomForestSRC', '2.0.7', ext_options), + ('sm', '2.2-5.4', ext_options), ] moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.2.3-foss-2015b.eb b/easybuild/easyconfigs/r/R/R-3.2.3-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..c3a62add2ce9d15867a7740846e4017c51de8083 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.2.3-foss-2015b.eb @@ -0,0 +1,442 @@ +name = 'R' +version = '3.2.3' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '5.9'), + ('libpng', '1.6.17'), # for plotting in R + ('libjpeg-turbo', '1.4.1'), # for plottting in R + ('Java', '1.8.0_72', '', True), # Java bindings are built if Java is found, might as well provide it + ('Tcl', '8.6.4'), # for tcltk + ('Tk', '8.6.4', '-no-X11'), # for tcltk + ('cURL', '7.45.0'), # for RCurl + ('libxml2', '2.9.2'), # for XML + ('GDAL', '2.0.1'), # for rgdal + ('PROJ', '4.8.0'), # for rgdal +] + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.r-project.org/src/contrib/', # current version of packages + 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': name_tmpl, +} + + +# !! order of packages is important !! +# packages updated on January 21st 2016 +exts_list = [ + # default libraries, only here to sanity check their presence + 'base', + 'datasets', + 'graphics', + 'grDevices', + 'grid', + 'methods', + 'splines', + 'stats', + 'stats4', + 'tools', + 'utils', + # non-standard libraries, should be specified with fixed versions! + ('Rmpi', '0.6-5', ext_options), + ('abind', '1.4-3', ext_options), + ('magic', '1.5-6', ext_options), + ('geometry', '0.3-6', ext_options), + ('bit', '1.1-12', ext_options), + ('filehash', '2.3', ext_options), + ('ff', '2.2-13', ext_options), + ('bnlearn', '3.9', ext_options), + ('bootstrap', '2015.2', ext_options), + ('combinat', '0.0-8', ext_options), + ('deal', '1.2-37', ext_options), + ('fdrtool', '1.2.15', ext_options), + ('formatR', '1.2.1', ext_options), + ('gtools', '3.5.0', ext_options), + ('gdata', '2.17.0', ext_options), + ('GSA', '1.03', ext_options), + ('highr', '0.5.1', ext_options), + ('infotheo', '1.2.0', ext_options), + ('lars', '1.2', ext_options), + ('lazy', '1.2-15', ext_options), + ('kernlab', '0.9-22', ext_options), + ('mime', '0.4', ext_options), + ('markdown', '0.7.7', ext_options), + ('mlbench', '2.1-1', ext_options), + ('NLP', '0.1-8', ext_options), + ('mclust', '5.1', ext_options), + ('RANN', '2.5', ext_options), + ('rmeta', '2.16', ext_options), + ('segmented', '0.5-1.4', ext_options), + ('som', '0.3-5', ext_options), + ('SuppDists', '1.1-9.1', ext_options), + ('stabledist', '0.7-0', ext_options), + ('survivalROC', '1.0.3', ext_options), + ('pspline', '1.0-17', ext_options), + ('timeDate', '3012.100', ext_options), + ('longmemo', '1.0-0', ext_options), + ('ADGofTest', '0.3', ext_options), + ('ade4', '1.7-3', ext_options), + ('AlgDesign', '1.1-7.3', ext_options), + ('base64enc', '0.1-3', ext_options), + ('BH', '1.60.0-1', ext_options), + ('brew', '1.0-6', ext_options), + ('Brobdingnag', '1.2-4', ext_options), + ('corpcor', '1.6.8', ext_options), + ('longitudinal', '1.1.12', ext_options), + ('checkmate', '1.6.3', ext_options), + ('cubature', '1.1-2', ext_options), + ('DEoptimR', '1.0-4', ext_options), + ('digest', '0.6.8', ext_options), + ('fastmatch', '1.0-4', ext_options), + ('ffbase', '0.12.1', ext_options), + ('iterators', '1.0.8', ext_options), + ('maps', '3.0.2', ext_options), + ('nnls', '1.4', ext_options), + ('sendmailR', '1.2-1', ext_options), + ('spam', '1.3-0', ext_options), + ('subplex', '1.1-6', ext_options), + ('stringi', '1.0-1', ext_options), + ('magrittr', '1.5', ext_options), + ('stringr', '1.0.0', ext_options), + ('evaluate', '0.8', ext_options), + ('logspline', '2.1.8', ext_options), + ('ncbit', '2013.03.29', ext_options), + ('permute', '0.8-4', ext_options), + ('plotrix', '3.6-1', ext_options), + ('randomForest', '4.6-12', ext_options), + ('scatterplot3d', '0.3-36', ext_options), + ('SparseM', '1.7', ext_options), + ('tripack', '1.3-7', ext_options), + ('irace', '1.07', ext_options), + ('rJava', '0.9-7', ext_options), + ('lattice', '0.20-33', ext_options), + ('RColorBrewer', '1.1-2', ext_options), + ('latticeExtra', '0.6-26', ext_options), + ('Matrix', '1.2-3', ext_options), + ('png', '0.1-7', ext_options), + ('Rcpp', '0.12.2', ext_options), + ('RcppArmadillo', '0.6.400.2.2', ext_options), + ('plyr', '1.8.3', ext_options), + ('pROC', '1.8', ext_options), + ('quadprog', '1.5-5', ext_options), + ('BB', '2014.10-1', ext_options), + ('BBmisc', '1.9', ext_options), + ('fail', '1.3', ext_options), + ('rlecuyer', '0.3-4', ext_options), + ('snow', '0.4-1', ext_options), + ('MASS', '7.3-45', ext_options), + ('tree', '1.0-36', ext_options), + ('pls', '2.5-0', ext_options), + ('class', '7.3-14', ext_options), + ('e1071', '1.6-7', ext_options), + ('nnet', '7.3-11', ext_options), + ('nlme', '3.1-122', ext_options), + ('minqa', '1.2.4', ext_options), + ('RcppEigen', '0.3.2.5.1', ext_options), + ('MatrixModels', '0.4-1', ext_options), + ('quantreg', '5.19', ext_options), + ('mgcv', '1.8-10', ext_options), + ('colorspace', '1.2-6', ext_options), + ('robustbase', '0.92-5', ext_options), + ('sp', '1.2-1', ext_options), + ('zoo', '1.7-12', ext_options), + ('lmtest', '0.9-34', ext_options), + ('vcd', '1.4-1', ext_options), + ('snowfall', '1.84-6.1', ext_options), + ('rpart', '4.1-10', ext_options), + ('survival', '2.38-3', ext_options), + ('mice', '2.25', ext_options), + ('urca', '1.2-8', ext_options), + ('fracdiff', '1.4-2', ext_options), + ('logistf', '1.21', ext_options), + ('akima', '0.5-12', ext_options), + ('bitops', '1.0-6', ext_options), + ('boot', '1.3-17', ext_options), + ('mixtools', '1.0.3', ext_options), + ('cluster', '2.0.3', ext_options), + ('gclus', '1.3.1', ext_options), + ('coda', '0.18-1', ext_options), + ('codetools', '0.2-14', ext_options), + ('foreach', '1.4.3', ext_options), + ('doMC', '1.3.4', ext_options), + ('DBI', '0.3.1', ext_options), + ('foreign', '0.8-66', ext_options), + ('gam', '1.12', ext_options), + ('gamlss.data', '4.3-2', ext_options), + ('gamlss.dist', '4.3-5', ext_options), + ('hwriter', '1.3.2', ext_options), + ('KernSmooth', '2.23-15', ext_options), + ('xts', '0.9-7', ext_options), + ('TTR', '0.23-0', ext_options), + ('quantmod', '0.4-5', ext_options), + ('mnormt', '1.5-3', ext_options), + ('mvtnorm', '1.0-3', ext_options), + ('pcaPP', '1.9-60', ext_options), + ('numDeriv', '2014.2-1', ext_options), + ('lava', '1.4.1', ext_options), + ('prodlim', '1.5.7', ext_options), + ('pscl', '1.4.9', ext_options), + ('RSQLite', '1.0.0', ext_options), + ('BatchJobs', '1.6', ext_options), + ('sandwich', '2.3-4', ext_options), + ('sfsmisc', '1.0-28', ext_options), + ('spatial', '7.3-11', ext_options), + ('VGAM', '1.0-0', ext_options), + ('waveslim', '1.7.5', ext_options), + ('xtable', '1.8-0', ext_options), + ('profileModel', '0.5-9', ext_options), + ('brglm', '0.5-9', ext_options), + ('deSolve', '1.12', ext_options), + ('tseriesChaos', '0.1-13', ext_options), + ('tseries', '0.10-34', ext_options), + ('fastICA', '1.2-0', ext_options), + ('R.methodsS3', '1.7.0', ext_options), + ('R.oo', '1.19.0', ext_options), + ('cgdsr', '1.2.5', ext_options), + ('R.utils', '2.2.0', ext_options), + ('R.matlab', '3.3.0', ext_options), + ('gbm', '2.1.1', ext_options), + ('dichromat', '2.0-0', ext_options), + ('Formula', '1.2-1', ext_options), + ('acepack', '1.3-3.3', ext_options), + ('reshape2', '1.4.1', ext_options), + ('gtable', '0.1.2', ext_options), + ('munsell', '0.4.2', ext_options), + ('labeling', '0.3', ext_options), + ('scales', '0.3.0', ext_options), + ('proto', '0.3-10', ext_options), + ('ggplot2', '2.0.0', ext_options), + ('gridExtra', '2.0.0', ext_options), + ('Hmisc', '3.17-1', ext_options), + ('fastcluster', '1.1.16', ext_options), + ('chron', '2.3-47', ext_options), + ('data.table', '1.9.6', ext_options), + ('registry', '0.3', ext_options), + ('pkgmaker', '0.22', ext_options), + ('rngtools', '1.2.4', ext_options), + ('doParallel', '1.0.10', ext_options), + ('gridBase', '0.4-7', ext_options), + ('NMF', '0.20.6', ext_options), + ('irlba', '2.0.0', ext_options), + ('igraph', '1.0.1', ext_options), + ('GeneNet', '1.2.13', ext_options), + ('ape', '3.4', ext_options), + ('htmltools', '0.3', ext_options), + ('RJSONIO', '1.3-0', ext_options), + ('caTools', '1.17.1', ext_options), + ('gplots', '2.17.0', ext_options), + ('ROCR', '1.0-7', ext_options), + ('httpuv', '1.3.3', ext_options), + ('R6', '2.1.1', ext_options), + ('jsonlite', '0.9.19', ext_options), + ('rjson', '0.2.15', ext_options), + ('shiny', '0.12.2', ext_options), + ('seqinr', '3.1-3', ext_options), + ('LearnBayes', '2.15', ext_options), + ('deldir', '0.1-9', ext_options), + ('spdep', '0.5-92', ext_options), + ('assertthat', '0.1', ext_options), + ('lazyeval', '0.1.10', ext_options), + ('dplyr', '0.4.3', ext_options), + ('adegenet', '2.0.0', ext_options), + ('rncl', '0.6.0', ext_options), + ('XML', '3.98-1.3', ext_options), + ('memoise', '0.2.1', ext_options), + ('crayon', '1.3.1', ext_options), + ('praise', '1.0.0', ext_options), + ('testthat', '0.11.0', ext_options), + ('yaml', '2.1.13', ext_options), + ('knitr', '1.11', ext_options), + ('rmarkdown', '0.9.2', ext_options), + ('curl', '0.9.4', ext_options), + ('httr', '1.0.0', ext_options), + ('reshape', '0.8.5', ext_options), + ('bold', '0.3.0', ext_options), + ('taxize', '0.7.0', ext_options), + ('tidyr', '0.3.1', ext_options), + ('uuid', '0.1-2', ext_options), + ('RNeXML', '2.0.5', ext_options), + ('phylobase', '0.8.0', ext_options), + ('adephylo', '1.1-6', ext_options), + ('animation', '2.4', ext_options), + ('bigmemory.sri', '0.1.3', ext_options), + ('bigmemory', '4.5.8', ext_options), + ('calibrate', '1.7.2', ext_options), + ('clusterGeneration', '1.3.4', ext_options), + ('raster', '2.5-2', ext_options), + ('dismo', '1.0-12', ext_options), + ('expm', '0.999-0', ext_options), + ('extrafontdb', '1.0', ext_options), + ('Rttf2pt1', '1.3.3', ext_options), + ('extrafont', '0.17', ext_options), + ('fields', '8.3-6', ext_options), + ('shapefiles', '0.7', ext_options), + ('fossil', '0.3.7', ext_options), + ('geiger', '2.0.6', ext_options), + ('glmnet', '2.0-2', ext_options), + ('rgl', '0.95.1441', ext_options), + ('labdsv', '1.7-0', ext_options), + ('stabs', '0.5-1', ext_options), + ('mboost', '2.5-0', ext_options), + ('msm', '1.6', ext_options), + ('nor1mix', '1.2-1', ext_options), + ('np', '0.60-2', ext_options), + ('polynom', '1.3-8', ext_options), + ('polspline', '1.1.12', ext_options), + ('TH.data', '1.0-6', ext_options), + ('multcomp', '1.4-1', ext_options), + ('rms', '4.4-1', ext_options), + ('RWekajars', '3.7.12-1', ext_options), + ('RWeka', '0.4-24', ext_options), + ('slam', '0.1-32', ext_options), + ('tm', '0.6-2', ext_options), + ('TraMineR', '1.8-11', ext_options), + ('chemometrics', '1.3.9', ext_options), + ('FNN', '1.1', ext_options), + ('ipred', '0.9-5', ext_options), + ('statmod', '1.4.23', ext_options), + ('miscTools', '0.6-16', ext_options), + ('maxLik', '1.3-4', ext_options), + ('mlogit', '0.2-4', ext_options), + ('getopt', '1.20.0', ext_options), + ('gsalib', '2.1', ext_options), + ('optparse', '1.3.2', ext_options), + ('klaR', '0.6-12', ext_options), + ('neuRosim', '0.2-12', ext_options), + ('locfit', '1.5-9.1', ext_options), + ('GGally', '1.0.0', ext_options), + ('beanplot', '1.2', ext_options), + ('clValid', '0.6-6', ext_options), + ('matrixStats', '0.50.1', ext_options), + ('DiscriMiner', '0.1-29', ext_options), + ('ellipse', '0.3-8', ext_options), + ('leaps', '2.9', ext_options), + ('nloptr', '1.0.4', ext_options), + ('lme4', '1.1-10', ext_options), + ('pbkrtest', '0.4-4', ext_options), + ('car', '2.1-1', ext_options), + ('flashClust', '1.01-2', ext_options), + ('FactoMineR', '1.31.4', ext_options), + ('modeltools', '0.2-21', ext_options), + ('flexclust', '1.3-4', ext_options), + ('flexmix', '2.3-13', ext_options), + ('prabclus', '2.2-6', ext_options), + ('diptest', '0.75-7', ext_options), + ('trimcluster', '0.1-2', ext_options), + ('fpc', '2.1-10', ext_options), + ('BiasedUrn', '1.07', ext_options), + ('TeachingDemos', '2.9', ext_options), + ('kohonen', '2.0.19', ext_options), + ('base64', '1.1', ext_options), + ('doRNG', '1.6', ext_options), + ('nleqslv', '2.9.1', ext_options), + ('RGCCA', '2.0', ext_options), + ('pheatmap', '1.0.8', ext_options), + ('openxlsx', '3.0.0', ext_options), + ('pvclust', '2.0-0', ext_options), + ('RCircos', '1.1.3', ext_options), + ('lambda.r', '1.1.7', ext_options), + ('futile.options', '1.0.0', ext_options), + ('futile.logger', '1.4.1', ext_options), + ('VennDiagram', '1.6.16', ext_options), + ('xlsxjars', '0.6.1', ext_options), + ('xlsx', '0.5.7', ext_options), + ('vegan', '2.3-2', ext_options), + ('forecast', '6.1', ext_options), + ('fma', '2.01', ext_options), + ('expsmooth', '2.3', ext_options), + ('fpp', '0.5', ext_options), + ('maptools', '0.8-37', ext_options), + ('deldir', '0.1-9', ext_options), + ('tensor', '1.5', ext_options), + ('polyclip', '1.3-2', ext_options), + ('goftest', '1.0-3', ext_options), + ('spatstat', '1.44-1', ext_options), + ('rgdal', '1.1-3', ext_options), + ('gdalUtils', '2.0.1.7', ext_options), + ('pracma', '1.8.8', ext_options), + ('RCurl', '1.95-4.7', ext_options), + ('bio3d', '2.2-4', ext_options), + ('AUC', '0.3.0', ext_options), + ('interpretR', '0.2.3', ext_options), + ('SuperLearner', '2.0-15', ext_options), + ('lpSolve', '5.6.13', ext_options), + ('mediation', '4.4.5', ext_options), + ('caret', '6.0-64', ext_options), + ('adabag', '4.1', ext_options), + ('parallelMap', '1.3', ext_options), + ('ParamHelpers', '1.6', ext_options), + ('ggvis', '0.4.2', ext_options), + ('mlr', '2.7', ext_options), + ('unbalanced', '2.0', ext_options), + ('RSNNS', '0.4-7', ext_options), + ('abc.data', '1.0', ext_options), + ('abc', '2.1', ext_options), + ('lhs', '0.10', ext_options), + ('tensorA', '0.36', ext_options), + ('EasyABC', '1.5', ext_options), + ('shape', '1.4.2', ext_options), + ('whisker', '0.3-2', ext_options), + ('rstudioapi', '0.4.0', ext_options), + ('roxygen2', '5.0.1', ext_options), + ('git2r', '0.13.1', ext_options), + ('xml2', '0.1.2', ext_options), + ('rversions', '1.0.2', ext_options), + ('devtools', '1.9.1', ext_options), + ('Rook', '1.1-1', ext_options), + ('rjson', '0.2.15', ext_options), + ('Cairo', '1.5-9', ext_options), + ('RMTstat', '0.3', ext_options), + ('Lmoments', '1.1-6', ext_options), + ('distillery', '1.0-2', ext_options), + ('extRemes', '2.0-7', ext_options), + ('pixmap', '0.4-11', ext_options), + ('tkrplot', '0.0-23', ext_options), + ('misc3d', '0.8-4', ext_options), + ('multicool', '0.1-9', ext_options), + ('ks', '1.10.1', ext_options), + ('logcondens', '2.1.4', ext_options), + ('Iso', '0.0-17', ext_options), + ('penalized', '0.9-45', ext_options), + ('coin', '1.1-2', ext_options), + ('clusterRepro', '0.5-1.1', ext_options), + ('randomForestSRC', '2.0.7', ext_options), + ('sm', '2.2-5.4', ext_options), + ('psych', '1.5.8', ext_options), + ('pbivnorm', '0.6.0', ext_options), + ('lavaan', '0.5-20', ext_options), + ('matrixcalc', '1.0-3', ext_options), + ('arm', '1.8-6', ext_options), + ('mi', '1.0', ext_options), + ('htmlwidgets', '0.6', ext_options), + ('visNetwork', '0.2.1', ext_options), + ('DiagrammeR', '0.8.2', ext_options), + ('sem', '3.1-6', ext_options), + ('jpeg', '0.1-8', ext_options), + ('sna', '2.3-2', ext_options), + ('glasso', '1.8', ext_options), + ('huge', '1.2.7', ext_options), + ('d3Network', '0.5.2.1', ext_options), + ('ggm', '2.3', ext_options), + ('qgraph', '1.3.2', ext_options), + ('diveRsity', '1.9.89', ext_options), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a.eb b/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..eb2673295f54e939e7a5a1228f00e2c6d1533cb0 --- /dev/null +++ b/easybuild/easyconfigs/r/R/R-3.2.3-intel-2016a.eb @@ -0,0 +1,442 @@ +name = 'R' +version = '3.2.3' + +homepage = 'http://www.r-project.org/' +description = """R is a free software environment for statistical computing and graphics.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s'] + +preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"' +configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib" +# some recommended packages may fail in a parallel build (e.g. Matrix), and we're installing them anyway below +configopts += " --with-recommended-packages=no" + +dependencies = [ + ('libreadline', '6.3'), + ('ncurses', '6.0'), + ('libpng', '1.6.21'), # for plotting in R + ('libjpeg-turbo', '1.4.2'), # for plottting in R + ('Java', '1.8.0_72', '', True), # Java bindings are built if Java is found, might as well provide it + ('Tcl', '8.6.4'), # for tcltk + ('Tk', '8.6.4', '-no-X11'), # for tcltk + ('cURL', '7.47.0'), # for RCurl + ('libxml2', '2.9.3'), # for XML + ('GDAL', '2.0.2'), # for rgdal + ('PROJ', '4.9.2'), # for rgdal +] + +name_tmpl = '%(name)s_%(version)s.tar.gz' +ext_options = { + 'source_urls': [ + 'http://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'http://cran.r-project.org/src/contrib/', # current version of packages + 'http://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': name_tmpl, +} + + +# !! order of packages is important !! +# packages updated on January 21st 2016 +exts_list = [ + # default libraries, only here to sanity check their presence + 'base', + 'datasets', + 'graphics', + 'grDevices', + 'grid', + 'methods', + 'splines', + 'stats', + 'stats4', + 'tools', + 'utils', + # non-standard libraries, should be specified with fixed versions! + ('Rmpi', '0.6-5', dict(ext_options.items() + [('patches', ['Rmpi-0.6-5_impi5.patch'])])), + ('abind', '1.4-3', ext_options), + ('magic', '1.5-6', ext_options), + ('geometry', '0.3-6', dict(ext_options.items() + [('patches', ['geometry-0.3-4-icc.patch'])])), + ('bit', '1.1-12', ext_options), + ('filehash', '2.3', ext_options), + ('ff', '2.2-13', ext_options), + ('bnlearn', '3.9', ext_options), + ('bootstrap', '2015.2', ext_options), + ('combinat', '0.0-8', ext_options), + ('deal', '1.2-37', ext_options), + ('fdrtool', '1.2.15', ext_options), + ('formatR', '1.2.1', ext_options), + ('gtools', '3.5.0', ext_options), + ('gdata', '2.17.0', ext_options), + ('GSA', '1.03', ext_options), + ('highr', '0.5.1', ext_options), + ('infotheo', '1.2.0', ext_options), + ('lars', '1.2', ext_options), + ('lazy', '1.2-15', ext_options), + ('kernlab', '0.9-22', ext_options), + ('mime', '0.4', ext_options), + ('markdown', '0.7.7', ext_options), + ('mlbench', '2.1-1', ext_options), + ('NLP', '0.1-8', ext_options), + ('mclust', '5.1', ext_options), + ('RANN', '2.5', ext_options), + ('rmeta', '2.16', ext_options), + ('segmented', '0.5-1.4', ext_options), + ('som', '0.3-5', ext_options), + ('SuppDists', '1.1-9.1', ext_options), + ('stabledist', '0.7-0', ext_options), + ('survivalROC', '1.0.3', ext_options), + ('pspline', '1.0-17', ext_options), + ('timeDate', '3012.100', ext_options), + ('longmemo', '1.0-0', ext_options), + ('ADGofTest', '0.3', ext_options), + ('ade4', '1.7-3', ext_options), + ('AlgDesign', '1.1-7.3', ext_options), + ('base64enc', '0.1-3', ext_options), + ('BH', '1.60.0-1', ext_options), + ('brew', '1.0-6', ext_options), + ('Brobdingnag', '1.2-4', ext_options), + ('corpcor', '1.6.8', ext_options), + ('longitudinal', '1.1.12', ext_options), + ('checkmate', '1.6.3', ext_options), + ('cubature', '1.1-2', ext_options), + ('DEoptimR', '1.0-4', ext_options), + ('digest', '0.6.8', ext_options), + ('fastmatch', '1.0-4', ext_options), + ('ffbase', '0.12.1', ext_options), + ('iterators', '1.0.8', ext_options), + ('maps', '3.0.2', ext_options), + ('nnls', '1.4', ext_options), + ('sendmailR', '1.2-1', ext_options), + ('spam', '1.3-0', ext_options), + ('subplex', '1.1-6', ext_options), + ('stringi', '1.0-1', ext_options), + ('magrittr', '1.5', ext_options), + ('stringr', '1.0.0', ext_options), + ('evaluate', '0.8', ext_options), + ('logspline', '2.1.8', ext_options), + ('ncbit', '2013.03.29', ext_options), + ('permute', '0.8-4', ext_options), + ('plotrix', '3.6-1', ext_options), + ('randomForest', '4.6-12', ext_options), + ('scatterplot3d', '0.3-36', ext_options), + ('SparseM', '1.7', ext_options), + ('tripack', '1.3-7', ext_options), + ('irace', '1.07', ext_options), + ('rJava', '0.9-7', ext_options), + ('lattice', '0.20-33', ext_options), + ('RColorBrewer', '1.1-2', ext_options), + ('latticeExtra', '0.6-26', ext_options), + ('Matrix', '1.2-3', ext_options), + ('png', '0.1-7', ext_options), + ('Rcpp', '0.12.2', ext_options), + ('RcppArmadillo', '0.6.400.2.2', ext_options), + ('plyr', '1.8.3', ext_options), + ('pROC', '1.8', ext_options), + ('quadprog', '1.5-5', ext_options), + ('BB', '2014.10-1', ext_options), + ('BBmisc', '1.9', ext_options), + ('fail', '1.3', ext_options), + ('rlecuyer', '0.3-4', ext_options), + ('snow', '0.4-1', ext_options), + ('MASS', '7.3-45', ext_options), + ('tree', '1.0-36', ext_options), + ('pls', '2.5-0', ext_options), + ('class', '7.3-14', ext_options), + ('e1071', '1.6-7', ext_options), + ('nnet', '7.3-11', ext_options), + ('nlme', '3.1-122', ext_options), + ('minqa', '1.2.4', ext_options), + ('RcppEigen', '0.3.2.5.1', ext_options), + ('MatrixModels', '0.4-1', ext_options), + ('quantreg', '5.19', ext_options), + ('mgcv', '1.8-10', ext_options), + ('colorspace', '1.2-6', ext_options), + ('robustbase', '0.92-5', ext_options), + ('sp', '1.2-1', ext_options), + ('zoo', '1.7-12', ext_options), + ('lmtest', '0.9-34', ext_options), + ('vcd', '1.4-1', ext_options), + ('snowfall', '1.84-6.1', ext_options), + ('rpart', '4.1-10', ext_options), + ('survival', '2.38-3', ext_options), + ('mice', '2.25', ext_options), + ('urca', '1.2-8', ext_options), + ('fracdiff', '1.4-2', ext_options), + ('logistf', '1.21', ext_options), + ('akima', '0.5-12', ext_options), + ('bitops', '1.0-6', ext_options), + ('boot', '1.3-17', ext_options), + ('mixtools', '1.0.3', ext_options), + ('cluster', '2.0.3', ext_options), + ('gclus', '1.3.1', ext_options), + ('coda', '0.18-1', ext_options), + ('codetools', '0.2-14', ext_options), + ('foreach', '1.4.3', ext_options), + ('doMC', '1.3.4', ext_options), + ('DBI', '0.3.1', ext_options), + ('foreign', '0.8-66', ext_options), + ('gam', '1.12', ext_options), + ('gamlss.data', '4.3-2', ext_options), + ('gamlss.dist', '4.3-5', ext_options), + ('hwriter', '1.3.2', ext_options), + ('KernSmooth', '2.23-15', ext_options), + ('xts', '0.9-7', ext_options), + ('TTR', '0.23-0', ext_options), + ('quantmod', '0.4-5', ext_options), + ('mnormt', '1.5-3', ext_options), + ('mvtnorm', '1.0-3', ext_options), + ('pcaPP', '1.9-60', ext_options), + ('numDeriv', '2014.2-1', ext_options), + ('lava', '1.4.1', ext_options), + ('prodlim', '1.5.7', ext_options), + ('pscl', '1.4.9', ext_options), + ('RSQLite', '1.0.0', ext_options), + ('BatchJobs', '1.6', ext_options), + ('sandwich', '2.3-4', ext_options), + ('sfsmisc', '1.0-28', ext_options), + ('spatial', '7.3-11', ext_options), + ('VGAM', '1.0-0', ext_options), + ('waveslim', '1.7.5', ext_options), + ('xtable', '1.8-0', ext_options), + ('profileModel', '0.5-9', ext_options), + ('brglm', '0.5-9', ext_options), + ('deSolve', '1.12', ext_options), + ('tseriesChaos', '0.1-13', ext_options), + ('tseries', '0.10-34', ext_options), + ('fastICA', '1.2-0', ext_options), + ('R.methodsS3', '1.7.0', ext_options), + ('R.oo', '1.19.0', ext_options), + ('cgdsr', '1.2.5', ext_options), + ('R.utils', '2.2.0', ext_options), + ('R.matlab', '3.3.0', ext_options), + ('gbm', '2.1.1', ext_options), + ('dichromat', '2.0-0', ext_options), + ('Formula', '1.2-1', ext_options), + ('acepack', '1.3-3.3', ext_options), + ('reshape2', '1.4.1', ext_options), + ('gtable', '0.1.2', ext_options), + ('munsell', '0.4.2', ext_options), + ('labeling', '0.3', ext_options), + ('scales', '0.3.0', ext_options), + ('proto', '0.3-10', ext_options), + ('ggplot2', '2.0.0', ext_options), + ('gridExtra', '2.0.0', ext_options), + ('Hmisc', '3.17-1', ext_options), + ('fastcluster', '1.1.16', ext_options), + ('chron', '2.3-47', ext_options), + ('data.table', '1.9.6', ext_options), + ('registry', '0.3', ext_options), + ('pkgmaker', '0.22', ext_options), + ('rngtools', '1.2.4', ext_options), + ('doParallel', '1.0.10', ext_options), + ('gridBase', '0.4-7', ext_options), + ('NMF', '0.20.6', ext_options), + ('irlba', '2.0.0', ext_options), + ('igraph', '1.0.1', ext_options), + ('GeneNet', '1.2.13', ext_options), + ('ape', '3.4', ext_options), + ('htmltools', '0.3', ext_options), + ('RJSONIO', '1.3-0', ext_options), + ('caTools', '1.17.1', ext_options), + ('gplots', '2.17.0', ext_options), + ('ROCR', '1.0-7', ext_options), + ('httpuv', '1.3.3', ext_options), + ('R6', '2.1.1', ext_options), + ('jsonlite', '0.9.19', ext_options), + ('rjson', '0.2.15', ext_options), + ('shiny', '0.12.2', ext_options), + ('seqinr', '3.1-3', ext_options), + ('LearnBayes', '2.15', ext_options), + ('deldir', '0.1-9', ext_options), + ('spdep', '0.5-92', ext_options), + ('assertthat', '0.1', ext_options), + ('lazyeval', '0.1.10', ext_options), + ('dplyr', '0.4.3', ext_options), + ('adegenet', '2.0.0', ext_options), + ('rncl', '0.6.0', ext_options), + ('XML', '3.98-1.3', ext_options), + ('memoise', '0.2.1', ext_options), + ('crayon', '1.3.1', ext_options), + ('praise', '1.0.0', ext_options), + ('testthat', '0.11.0', ext_options), + ('yaml', '2.1.13', ext_options), + ('knitr', '1.11', ext_options), + ('rmarkdown', '0.9.2', ext_options), + ('curl', '0.9.4', ext_options), + ('httr', '1.0.0', ext_options), + ('reshape', '0.8.5', ext_options), + ('bold', '0.3.0', ext_options), + ('taxize', '0.7.0', ext_options), + ('tidyr', '0.3.1', ext_options), + ('uuid', '0.1-2', ext_options), + ('RNeXML', '2.0.5', ext_options), + ('phylobase', '0.8.0', ext_options), + ('adephylo', '1.1-6', ext_options), + ('animation', '2.4', ext_options), + ('bigmemory.sri', '0.1.3', ext_options), + ('bigmemory', '4.5.8', dict(ext_options.items() + [('patches', ['bigmemory-4.5.8_icpc-wd308.patch'])])), + ('calibrate', '1.7.2', ext_options), + ('clusterGeneration', '1.3.4', ext_options), + ('raster', '2.5-2', ext_options), + ('dismo', '1.0-12', ext_options), + ('expm', '0.999-0', ext_options), + ('extrafontdb', '1.0', ext_options), + ('Rttf2pt1', '1.3.3', ext_options), + ('extrafont', '0.17', ext_options), + ('fields', '8.3-6', ext_options), + ('shapefiles', '0.7', ext_options), + ('fossil', '0.3.7', ext_options), + ('geiger', '2.0.6', ext_options), + ('glmnet', '2.0-2', ext_options), + ('rgl', '0.95.1441', ext_options), + ('labdsv', '1.7-0', ext_options), + ('stabs', '0.5-1', ext_options), + ('mboost', '2.5-0', ext_options), + ('msm', '1.6', ext_options), + ('nor1mix', '1.2-1', ext_options), + ('np', '0.60-2', ext_options), + ('polynom', '1.3-8', ext_options), + ('polspline', '1.1.12', ext_options), + ('TH.data', '1.0-6', ext_options), + ('multcomp', '1.4-1', ext_options), + ('rms', '4.4-1', ext_options), + ('RWekajars', '3.7.12-1', ext_options), + ('RWeka', '0.4-24', ext_options), + ('slam', '0.1-32', ext_options), + ('tm', '0.6-2', ext_options), + ('TraMineR', '1.8-11', ext_options), + ('chemometrics', '1.3.9', ext_options), + ('FNN', '1.1', ext_options), + ('ipred', '0.9-5', ext_options), + ('statmod', '1.4.23', ext_options), + ('miscTools', '0.6-16', ext_options), + ('maxLik', '1.3-4', ext_options), + ('mlogit', '0.2-4', ext_options), + ('getopt', '1.20.0', ext_options), + ('gsalib', '2.1', ext_options), + ('optparse', '1.3.2', ext_options), + ('klaR', '0.6-12', ext_options), + ('neuRosim', '0.2-12', ext_options), + ('locfit', '1.5-9.1', ext_options), + ('GGally', '1.0.0', ext_options), + ('beanplot', '1.2', ext_options), + ('clValid', '0.6-6', ext_options), + ('matrixStats', '0.50.1', ext_options), + ('DiscriMiner', '0.1-29', ext_options), + ('ellipse', '0.3-8', ext_options), + ('leaps', '2.9', ext_options), + ('nloptr', '1.0.4', ext_options), + ('lme4', '1.1-10', ext_options), + ('pbkrtest', '0.4-4', ext_options), + ('car', '2.1-1', ext_options), + ('flashClust', '1.01-2', ext_options), + ('FactoMineR', '1.31.4', ext_options), + ('modeltools', '0.2-21', ext_options), + ('flexclust', '1.3-4', ext_options), + ('flexmix', '2.3-13', ext_options), + ('prabclus', '2.2-6', ext_options), + ('diptest', '0.75-7', ext_options), + ('trimcluster', '0.1-2', ext_options), + ('fpc', '2.1-10', ext_options), + ('BiasedUrn', '1.07', ext_options), + ('TeachingDemos', '2.9', ext_options), + ('kohonen', '2.0.19', ext_options), + ('base64', '1.1', ext_options), + ('doRNG', '1.6', ext_options), + ('nleqslv', '2.9.1', ext_options), + ('RGCCA', '2.0', ext_options), + ('pheatmap', '1.0.8', ext_options), + ('openxlsx', '3.0.0', ext_options), + ('pvclust', '2.0-0', ext_options), + ('RCircos', '1.1.3', ext_options), + ('lambda.r', '1.1.7', ext_options), + ('futile.options', '1.0.0', ext_options), + ('futile.logger', '1.4.1', ext_options), + ('VennDiagram', '1.6.16', ext_options), + ('xlsxjars', '0.6.1', ext_options), + ('xlsx', '0.5.7', ext_options), + ('vegan', '2.3-2', ext_options), + ('forecast', '6.1', dict(ext_options.items() + [('patches', ['forecast-6.1_icpc-wd308.patch'])])), + ('fma', '2.01', ext_options), + ('expsmooth', '2.3', ext_options), + ('fpp', '0.5', ext_options), + ('maptools', '0.8-37', ext_options), + ('deldir', '0.1-9', ext_options), + ('tensor', '1.5', ext_options), + ('polyclip', '1.3-2', ext_options), + ('goftest', '1.0-3', ext_options), + ('spatstat', '1.44-1', ext_options), + ('rgdal', '1.1-3', ext_options), + ('gdalUtils', '2.0.1.7', ext_options), + ('pracma', '1.8.8', ext_options), + ('RCurl', '1.95-4.7', ext_options), + ('bio3d', '2.2-4', ext_options), + ('AUC', '0.3.0', ext_options), + ('interpretR', '0.2.3', ext_options), + ('SuperLearner', '2.0-15', ext_options), + ('lpSolve', '5.6.13', ext_options), + ('mediation', '4.4.5', ext_options), + ('caret', '6.0-64', ext_options), + ('adabag', '4.1', ext_options), + ('parallelMap', '1.3', ext_options), + ('ParamHelpers', '1.6', ext_options), + ('ggvis', '0.4.2', ext_options), + ('mlr', '2.7', ext_options), + ('unbalanced', '2.0', ext_options), + ('RSNNS', '0.4-7', ext_options), + ('abc.data', '1.0', ext_options), + ('abc', '2.1', ext_options), + ('lhs', '0.10', ext_options), + ('tensorA', '0.36', ext_options), + ('EasyABC', '1.5', ext_options), + ('shape', '1.4.2', ext_options), + ('whisker', '0.3-2', ext_options), + ('rstudioapi', '0.4.0', ext_options), + ('roxygen2', '5.0.1', ext_options), + ('git2r', '0.13.1', ext_options), + ('xml2', '0.1.2', ext_options), + ('rversions', '1.0.2', ext_options), + ('devtools', '1.9.1', ext_options), + ('Rook', '1.1-1', ext_options), + ('rjson', '0.2.15', ext_options), + ('Cairo', '1.5-9', ext_options), + ('RMTstat', '0.3', ext_options), + ('Lmoments', '1.1-6', ext_options), + ('distillery', '1.0-2', ext_options), + ('extRemes', '2.0-7', ext_options), + ('pixmap', '0.4-11', ext_options), + ('tkrplot', '0.0-23', ext_options), + ('misc3d', '0.8-4', ext_options), + ('multicool', '0.1-9', dict(ext_options.items() + [('patches', [('multicool-0.1-9_icpc-wd308.patch', 1)])])), + ('ks', '1.10.1', ext_options), + ('logcondens', '2.1.4', ext_options), + ('Iso', '0.0-17', ext_options), + ('penalized', '0.9-45', ext_options), + ('coin', '1.1-2', ext_options), + ('clusterRepro', '0.5-1.1', ext_options), + ('randomForestSRC', '2.0.7', ext_options), + ('sm', '2.2-5.4', ext_options), + ('psych', '1.5.8', ext_options), + ('pbivnorm', '0.6.0', ext_options), + ('lavaan', '0.5-20', ext_options), + ('matrixcalc', '1.0-3', ext_options), + ('arm', '1.8-6', ext_options), + ('mi', '1.0', ext_options), + ('htmlwidgets', '0.6', ext_options), + ('visNetwork', '0.2.1', ext_options), + ('DiagrammeR', '0.8.2', ext_options), + ('sem', '3.1-6', ext_options), + ('jpeg', '0.1-8', ext_options), + ('sna', '2.3-2', ext_options), + ('glasso', '1.8', dict(ext_options.items() + [('patches', [('glasso-1.8-ifort-no-fixed.patch', 1)])])), + ('huge', '1.2.7', ext_options), + ('d3Network', '0.5.2.1', ext_options), + ('ggm', '2.3', ext_options), + ('qgraph', '1.3.2', ext_options), + ('diveRsity', '1.9.89', ext_options), +] + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/r/R/bigmemory-4.5.8_icpc-wd308.patch b/easybuild/easyconfigs/r/R/bigmemory-4.5.8_icpc-wd308.patch new file mode 100644 index 0000000000000000000000000000000000000000..11064f05f7541d4dd8a143717b229819396a861c --- /dev/null +++ b/easybuild/easyconfigs/r/R/bigmemory-4.5.8_icpc-wd308.patch @@ -0,0 +1,23 @@ +add -wd308 compiler option to dance around harmless compiler warning being treated as en error +author: Kenneth Hoste (HPC-UGent) +diff -ru bigmemory.orig/configure bigmemory/configure +--- bigmemory.orig/configure 2015-10-16 18:44:28.000000000 +0200 ++++ bigmemory/configure 2016-03-02 12:05:54.465799000 +0100 +@@ -37,3 +37,5 @@ + + echo "${FLAGS}" > src/Makevars + echo "${LIBS}" >> src/Makevars ++echo "# disable Intel C++ compiler (icpc) warning/error #308, to avoid 'member \"std::complex::_M_value\" is inaccessible'" >> src/Makevars ++echo "PKG_CXXFLAGS = -wd308" >> src/Makevars +diff -ru bigmemory.orig/MD5 bigmemory/MD5 +--- bigmemory.orig/MD5 2015-10-20 08:17:15.000000000 +0200 ++++ bigmemory/MD5 2016-03-02 12:06:21.181928000 +0100 +@@ -7,7 +7,7 @@ + 08d8ac748bb99e6cd73cbc851ba24e6f *R/zzz.R + ba12d9a9f21ff33b7f0e51d5645eeb67 *build/vignette.rds + da4cdd259fd09ece34aad718a9a11207 *cleanup +-3c21afb0f744e005b69e519259d85021 *configure ++f7c1fffb1d14974537e82237574eb11e *configure + fc5c8f75e424213609b3e3cd9b57f5bf *configure.win + 0cd9765e8adee62083d32a17a6b9aa07 *inst/CITATION + f883e7fbbec7e35f5142805cd80548cf *inst/doc/Overview.R diff --git a/easybuild/easyconfigs/r/R/glasso-1.8-ifort-no-fixed.patch b/easybuild/easyconfigs/r/R/glasso-1.8-ifort-no-fixed.patch new file mode 100644 index 0000000000000000000000000000000000000000..aed6efc0bfdb0841970fb1310d39e0dd50d953b7 --- /dev/null +++ b/easybuild/easyconfigs/r/R/glasso-1.8-ifort-no-fixed.patch @@ -0,0 +1,26 @@ +add -wd308 compiler option to dance around harmless compiler warning being treated as en error +author: Kenneth Hoste (HPC-UGent) +diff -ru glasso.orig/configure glasso/configure +--- glasso.orig/configure 2014-07-22 00:12:05.000000000 +0200 ++++ glasso/configure 2016-03-02 14:01:48.276280000 +0100 +@@ -2194,7 +2194,7 @@ + ;; + ifort) + echo " R configured for Intel fortran..." +- OUR_FCFLAGS="-O3 -axsse4.2 -r8 -fpp -fixed" ++ OUR_FCFLAGS="-O3 -axsse4.2 -r8 -fpp" + + ;; + *) +diff -ru glasso.orig/MD5 glasso/MD5 +--- glasso.orig/MD5 2014-07-22 10:29:36.000000000 +0200 ++++ glasso/MD5 2016-03-02 14:02:05.854342000 +0100 +@@ -3,7 +3,7 @@ + 9b2f2da42cd1d66c4e3cd38427a0bf7a *R/glasso.R + c1a3c7a42d3c130ba02f4827f056ac9a *R/glassopath.R + d5b44b59f23b953d6c2f8835e3fb180d *cleanup +-07f1fbe29f410cac4048f7dd0f838efb *configure ++cefcd7f95dc125a297700cb21bab535d *configure + 57edafaaa2abcf7a51526b81c0bae33f *configure.in + a92a091ed68d9cf0d5ee056b4ead20fb *man/glasso.Rd + e624eb3357a4d5c9dd0f2c5c734c7116 *man/glassopath.Rd diff --git a/easybuild/easyconfigs/r/R/multicool-0.1-9_icpc-wd308.patch b/easybuild/easyconfigs/r/R/multicool-0.1-9_icpc-wd308.patch new file mode 100644 index 0000000000000000000000000000000000000000..35704c2945694c7c017dec2366f84ff09262e018 --- /dev/null +++ b/easybuild/easyconfigs/r/R/multicool-0.1-9_icpc-wd308.patch @@ -0,0 +1,16 @@ +add -wd308 compiler option to avoid compiler warning #308 being treated as an error +author: Kenneth Hoste (HPC-UGent) +diff -ruN multicool.orig/MD5 multicool/MD5 +--- multicool.orig/MD5 2015-10-28 18:39:18.000000000 +0100 ++++ multicool/MD5 2016-02-23 14:09:09.547773000 +0100 +@@ -20,3 +20,4 @@ + b18b7e9e5912cf1014aa2c2fa8e86047 *src/compositions.cpp + 79239d0d8b59b7533a639d668c3a0857 *src/multicool.cpp + 62c660482671757c5490a422d955cbe1 *src/multinomial.h ++b1d3a4d02405fe08c7983c479bc27f13 *src/Makevars +diff -ruN multicool.orig/src/Makevars multicool/src/Makevars +--- multicool.orig/src/Makevars 1970-01-01 01:00:00.000000000 +0100 ++++ multicool/src/Makevars 2016-02-23 13:24:01.456230240 +0100 +@@ -0,0 +1,2 @@ ++# disable Intel C++ compiler (icpc) warning/error #308, to avoid 'member "std::complex::_M_value" is inaccessible' ++PKG_CXXFLAGS = -wd308 diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-hybrid-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-hybrid-sse3.eb index 567f46f555eec35381b5f2937f134dc1cd6c9576..985c8834410dee1a0007ae834275701ae6b5df5b 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-hybrid-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-hybrid-sse3.eb @@ -2,7 +2,7 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.2.6' -versionsuffix ='-hybrid-sse3' +versionsuffix = '-hybrid-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." @@ -10,7 +10,7 @@ description = "RAxML search algorithm for maximum likelihood based inference of toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'usempi': True} -# download from http://sco.h-its.org/exelixis/countSource726.php +source_urls = ['http://sco.h-its.org/exelixis/resource/download/software/'] sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mpi-sse3.eb index 0a2fbab41aff8754363edef106b740ab097b3082..e09f71abf5311cc945fff303141937988b4aef46 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mpi-sse3.eb @@ -2,7 +2,7 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.2.6' -versionsuffix ='-mpi-sse3' +versionsuffix = '-mpi-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." @@ -10,7 +10,7 @@ description = "RAxML search algorithm for maximum likelihood based inference of toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'usempi': True} -# download from http://sco.h-its.org/exelixis/countSource726.php +source_urls = ['http://sco.h-its.org/exelixis/resource/download/software/'] sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mt-sse3.eb index ebf504fd65afc6ccd9eaef07d2c93fac7016ce73..0fe0530f3ac458336b7b01ef6ded89cdce9fb398 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-mt-sse3.eb @@ -2,14 +2,14 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.2.6' -versionsuffix ='-mt-sse3' +versionsuffix = '-mt-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." toolchain = {'name': 'goolf', 'version': '1.4.10'} -# download from http://sco.h-its.org/exelixis/countSource726.php +source_urls = ['http://sco.h-its.org/exelixis/resource/download/software/'] sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-seq-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-seq-sse3.eb index 67c58af8a4c7687eb59d0d754053af2745da8c8c..af08c5c5e5b419e36c2137e17d3987365ba25866 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-seq-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-goolf-1.4.10-seq-sse3.eb @@ -2,14 +2,14 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.2.6' -versionsuffix ='-seq-sse3' +versionsuffix = '-seq-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." toolchain = {'name': 'goolf', 'version': '1.4.10'} -# download from http://sco.h-its.org/exelixis/countSource726.php +source_urls = ['http://sco.h-its.org/exelixis/resource/download/software/'] sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-hybrid-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-hybrid-sse3.eb index 4d4122a29d2d6ecf1e0bf2ebe5562058f9227598..caa22646501f373b7f4e46152ea97ef846c8bdd8 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-hybrid-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-hybrid-sse3.eb @@ -2,7 +2,7 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.2.6' -versionsuffix ='-hybrid-sse3' +versionsuffix = '-hybrid-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." @@ -10,7 +10,7 @@ description = "RAxML search algorithm for maximum likelihood based inference of toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'usempi': True} -# download from http://sco.h-its.org/exelixis/countSource726.php +source_urls = ['http://sco.h-its.org/exelixis/resource/download/software/'] sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mpi-sse3.eb index bb28e8240e3876b6ca1af521c576f3fee5ee4a6a..f75155255a80a76671164555158c3c9ea2613bc1 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mpi-sse3.eb @@ -2,7 +2,7 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.2.6' -versionsuffix ='-mpi-sse3' +versionsuffix = '-mpi-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." @@ -10,7 +10,7 @@ description = "RAxML search algorithm for maximum likelihood based inference of toolchain = {'name': 'ictce', 'version': '4.1.13'} toolchainopts = {'usempi': True} -# download from http://sco.h-its.org/exelixis/countSource726.php +source_urls = ['http://sco.h-its.org/exelixis/resource/download/software/'] sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mt-sse3.eb index 9768fc2a61bf0ab392c688512fc567b80ae47fb7..8d232532fb443d1bece73f1c14b80fa42511e868 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-mt-sse3.eb @@ -2,14 +2,14 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.2.6' -versionsuffix ='-mt-sse3' +versionsuffix = '-mt-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." toolchain = {'name': 'ictce', 'version': '4.1.13'} -# download from http://sco.h-its.org/exelixis/countSource726.php +source_urls = ['http://sco.h-its.org/exelixis/resource/download/software/'] sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-seq-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-seq-sse3.eb index 6c06107ea39ab6d62175eff4fcc4a0cd652923f8..13378694a33e31ba721adbd6469e841d85eb19f1 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-seq-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-4.1.13-seq-sse3.eb @@ -2,14 +2,14 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.2.6' -versionsuffix ='-seq-sse3' +versionsuffix = '-seq-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." toolchain = {'name': 'ictce', 'version': '4.1.13'} -# download from http://sco.h-its.org/exelixis/countSource726.php +source_urls = ['http://sco.h-its.org/exelixis/resource/download/software/'] sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-hybrid-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-hybrid-sse3.eb index c8becaa3bbb0cf6a00923be4480f5f5973465ed7..0868a2b38e16acace4b0a5184109d6e666ae026b 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-hybrid-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-hybrid-sse3.eb @@ -2,7 +2,7 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.2.6' -versionsuffix ='-hybrid-sse3' +versionsuffix = '-hybrid-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." @@ -10,7 +10,7 @@ description = "RAxML search algorithm for maximum likelihood based inference of toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'usempi': True} -# download from http://sco.h-its.org/exelixis/countSource726.php +source_urls = ['http://sco.h-its.org/exelixis/resource/download/software'] sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mpi-sse3.eb index e759597ee18693de988d367700810c6bd0064cf9..3a1597463cd48a11bf4bbb1a7d07c07182f4938b 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mpi-sse3.eb @@ -2,7 +2,7 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.2.6' -versionsuffix ='-mpi-sse3' +versionsuffix = '-mpi-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." @@ -10,7 +10,7 @@ description = "RAxML search algorithm for maximum likelihood based inference of toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'usempi': True} -# download from http://sco.h-its.org/exelixis/countSource726.php +source_urls = ['http://sco.h-its.org/exelixis/resource/download/software/'] sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mt-sse3.eb index 4dc53e2ba92437e1ae0b137416daa070d9ed7ef3..153acb74247887356d41d67914a02a1496bc2df6 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-mt-sse3.eb @@ -2,14 +2,14 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.2.6' -versionsuffix ='-mt-sse3' +versionsuffix = '-mt-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." toolchain = {'name': 'ictce', 'version': '5.3.0'} -# download from http://sco.h-its.org/exelixis/countSource726.php +source_urls = ['http://sco.h-its.org/exelixis/resource/download/software/'] sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-seq-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-seq-sse3.eb index b257e1623324f463a95c621e4c5c5efce40029bd..e7ee2daf46667ff343bd152f4d941b51d342a35a 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-seq-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.2.6-ictce-5.3.0-seq-sse3.eb @@ -2,14 +2,14 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.2.6' -versionsuffix ='-seq-sse3' +versionsuffix = '-seq-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." toolchain = {'name': 'ictce', 'version': '5.3.0'} -# download from http://sco.h-its.org/exelixis/countSource726.php +source_urls = ['http://sco.h-its.org/exelixis/resource/download/software/'] sources = [SOURCE_TAR_BZ2] skipsteps = ['configure', 'install'] diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-hybrid-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-hybrid-sse3.eb index e836b4e2bd66d439879a565a73f1436fd52c8ef9..d053b3dc21b0d5e455c1541b6662bcd38a0733ec 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-hybrid-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-hybrid-sse3.eb @@ -2,7 +2,7 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.7.5' -versionsuffix ='-hybrid-sse3' +versionsuffix = '-hybrid-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mpi-sse3.eb index b5fb5192305222e595e4398f4a35194da298db48..575001db8dcb37ae2efc8a459e9dae31cafd59ea 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mpi-sse3.eb @@ -2,7 +2,7 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.7.5' -versionsuffix ='-mpi-sse3' +versionsuffix = '-mpi-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mt-sse3.eb index 25df746f3e56f836fda176f538ec8dd1fcb833f0..a1fec5b741523f28b4375727b8b4fb2bf336e68b 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-mt-sse3.eb @@ -2,7 +2,7 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.7.5' -versionsuffix ='-mt-sse3' +versionsuffix = '-mt-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-seq-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-seq-sse3.eb index 46179d71f4e8fe37195c8cb3818e953b82a34c76..f253cc9c29a0153bf864d5d4e9ce818751092cd3 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-seq-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-goolf-1.4.10-seq-sse3.eb @@ -2,7 +2,7 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.7.5' -versionsuffix ='-seq-sse3' +versionsuffix = '-seq-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-hybrid-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-hybrid-sse3.eb index e82295aeaaf9156d726557ac13eca3e408fc81ca..7eb0b37f64a98ff06d547dc2dcab9e6381d4803a 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-hybrid-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-hybrid-sse3.eb @@ -2,7 +2,7 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.7.5' -versionsuffix ='-hybrid-sse3' +versionsuffix = '-hybrid-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mpi-sse3.eb index dc746f9bc03a7e91d2988c57f737236c6cd41616..0058765fc566fe88bd8c5a8016197c9e20a0d4ed 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mpi-sse3.eb @@ -2,7 +2,7 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.7.5' -versionsuffix ='-mpi-sse3' +versionsuffix = '-mpi-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mt-sse3.eb index 6c8a50bbe3c5c95f7dcbe092faf0133b9ce6a6f8..86dab359ac168b915f49b5289e345fc062466847 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-mt-sse3.eb @@ -2,7 +2,7 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.7.5' -versionsuffix ='-mt-sse3' +versionsuffix = '-mt-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-seq-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-seq-sse3.eb index 9fb4191bd03ee782d149de22d2ad3ec96a743636..b107d2a11a0fdd0fbe5c5b970963067d78112421 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-seq-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-7.7.5-ictce-5.3.0-seq-sse3.eb @@ -2,7 +2,7 @@ easyblock = 'ConfigureMake' name = 'RAxML' version = '7.7.5' -versionsuffix ='-seq-sse3' +versionsuffix = '-seq-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-avx.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-avx.eb index 34e93e35d82c4b518c5ed37a487d0829daca87c7..d7d22ad5ae512534ec8b26258dc81ed8e4e6e1eb 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-avx.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-avx.eb @@ -7,7 +7,7 @@ easyblock = 'MakeCp' name = 'RAxML' version = '8.1.1' -versionsuffix ='-mpi-avx' +versionsuffix = '-mpi-avx' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-sse3.eb index 42ce2e4fdd0c6599bcd8ca3e2b67cfaad282c915..dd4462802ce5d12126261b35dc1c345caaba54cc 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mpi-sse3.eb @@ -7,7 +7,7 @@ easyblock = 'MakeCp' name = 'RAxML' version = '8.1.1' -versionsuffix ='-mpi-sse3' +versionsuffix = '-mpi-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-avx.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-avx.eb index 09ffafe613b2e55941c21e0b7243b13ef76e1e10..d55bca8237ce5cfcd771f7dcf7b1f7de69e29e5d 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-avx.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-avx.eb @@ -7,7 +7,7 @@ easyblock = 'MakeCp' name = 'RAxML' version = '8.1.1' -versionsuffix ='-mt-avx' +versionsuffix = '-mt-avx' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-sse3.eb index 305c9c94a640a137e4fa53ec7c66c53194891c21..859f2adbb769c0db2637c92807494c16453d13cf 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.1.1-goolf-1.4.10-mt-sse3.eb @@ -7,7 +7,7 @@ easyblock = 'MakeCp' name = 'RAxML' version = '8.1.1' -versionsuffix ='-mt-sse3' +versionsuffix = '-mt-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.2.4-intel-2015b-hybrid-avx.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.2.4-intel-2015b-hybrid-avx.eb index 21edb6b26415de1cce34db37ba016bac85618db5..32f1d767ad8258ccf8f77dc08b3feee52aff8393 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-8.2.4-intel-2015b-hybrid-avx.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.2.4-intel-2015b-hybrid-avx.eb @@ -2,7 +2,7 @@ easyblock = 'MakeCp' name = 'RAxML' version = '8.2.4' -versionsuffix ='-hybrid-avx' +versionsuffix = '-hybrid-avx' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.2.4-intel-2015b-hybrid-avx2.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.2.4-intel-2015b-hybrid-avx2.eb index 4a164f580e70ba1eb8f07e0df266992a27d17e14..8ee726adbf023cd0067872b7a3a6573abc145e34 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-8.2.4-intel-2015b-hybrid-avx2.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.2.4-intel-2015b-hybrid-avx2.eb @@ -2,7 +2,7 @@ easyblock = 'MakeCp' name = 'RAxML' version = '8.2.4' -versionsuffix ='-hybrid-avx2' +versionsuffix = '-hybrid-avx2' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.2.4-intel-2015b-hybrid-sse3.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.2.4-intel-2015b-hybrid-sse3.eb index 2bd6afbde94898599cf703600abfa2f5af4173e7..1f3cc9523c1ba291907cbeb2716840616f03f9e4 100644 --- a/easybuild/easyconfigs/r/RAxML/RAxML-8.2.4-intel-2015b-hybrid-sse3.eb +++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.2.4-intel-2015b-hybrid-sse3.eb @@ -2,7 +2,7 @@ easyblock = 'MakeCp' name = 'RAxML' version = '8.2.4' -versionsuffix ='-hybrid-sse3' +versionsuffix = '-hybrid-sse3' homepage = 'https://github.com/stamatak/standard-RAxML' description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees." diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb index f2f5762ddaa8048d4a78158e3a089e2879797d5d..5f373bcc46a71384f21ce6e739442aa4baf20beb 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goalf-1.1.0-no-OFED.eb @@ -26,8 +26,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://www.tbi.univie.ac.at/~wash/%s' % name] sanity_check_paths = { - 'files': ['bin/RNAz'], - 'dirs': [] - } + 'files': ['bin/RNAz'], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb index c2b6fa1b2b9c609a98adb4ab8b41df98bb5e5983..2155ac1e7630e81bc4d2f5322ff8eddac08e01b5 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-goolf-1.4.10.eb @@ -26,8 +26,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://www.tbi.univie.ac.at/~wash/%s' % name] sanity_check_paths = { - 'files': ['bin/RNAz'], - 'dirs': [] - } + 'files': ['bin/RNAz'], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb index 7db22131266334af00df94a8e58d1aef137adc62..71400b6f392a6695e0cfe75373a043e9401e6d2a 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-4.0.6.eb @@ -26,8 +26,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://www.tbi.univie.ac.at/~wash/%s' % name] sanity_check_paths = { - 'files': ['bin/RNAz'], - 'dirs': [] - } + 'files': ['bin/RNAz'], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb index 32c6bcbc4b66d72df75c58d9ba3acbee663d0749..03f3c66babb1946ee19c480e4023d4c2784d3c83 100644 --- a/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/r/RNAz/RNAz-2.1-ictce-5.3.0.eb @@ -27,8 +27,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://www.tbi.univie.ac.at/~wash/%s' % name] sanity_check_paths = { - 'files': ['bin/RNAz'], - 'dirs': [] - } + 'files': ['bin/RNAz'], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-goalf-1.1.0-no-OFED.eb index 304bbf99c8c3bbff2260a56ca96c4bef76ca1a97..b1ee5419da4952428458934238ae5d12a50f29af 100644 --- a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-goalf-1.1.0-no-OFED.eb @@ -6,7 +6,7 @@ description = """The ROOT system provides a set of OO frameworks with all the fu needed to handle and analyze large amounts of data in a very efficient way.""" toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} -toolchainopts = {'pic':True} +toolchainopts = {'pic': True} sources = ['%s_%s.source.tar.gz' % (name.lower(), version)] source_urls = ['ftp://root.cern.ch/root/'] @@ -18,7 +18,7 @@ dependencies = [ ('GSL', '1.15'), ('libxml2', '2.8.0', '-%s-%s' % (python, pyver)), (python, pyver), - ] +] # architecture arch = 'linuxx8664gcc' diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-goolf-1.4.10.eb b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-goolf-1.4.10.eb index c771b391bb4efa3da9607a9b55dd86f132122ceb..4e14ff0190bb88af2cd54be20f320bdba0c80f7a 100644 --- a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-goolf-1.4.10.eb @@ -6,7 +6,7 @@ description = """The ROOT system provides a set of OO frameworks with all the fu needed to handle and analyze large amounts of data in a very efficient way.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} -toolchainopts = {'pic':True} +toolchainopts = {'pic': True} sources = ['%s_%s.source.tar.gz' % (name.lower(), version)] source_urls = ['ftp://root.cern.ch/root/'] @@ -15,10 +15,10 @@ python = 'Python' pyver = '2.7.3' dependencies = [ - ('GSL', '1.15'), - ('libxml2', '2.8.0', '-%s-%s' % (python, pyver)), - (python, pyver), - ] + ('GSL', '1.15'), + ('libxml2', '2.8.0', '-%s-%s' % (python, pyver)), + (python, pyver), +] # architecture arch = 'linuxx8664gcc' diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-ictce-4.0.6.eb b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-ictce-4.0.6.eb index 55aab9105bb4ba04c0f61cdd8149937dcd468165..6ac9d3d52c2f63fbac8ff5665131795b62670ada 100644 --- a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-ictce-4.0.6.eb @@ -13,7 +13,7 @@ source_urls = ['ftp://root.cern.ch/root/'] patches = [ 'configure_FftwFromMkl_28.patch', 'icc_ifort_v12.patch' - ] +] python = 'Python' pyver = '2.7.3' @@ -22,7 +22,7 @@ dependencies = [ ('GSL', '1.15'), ('libxml2', '2.8.0', '-%s-%s' % (python, pyver)), (python, pyver), - ] +] # architecture arch = 'linuxx8664icc' diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-intel-2015a.eb b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-intel-2015a.eb index c0e1e4e91ecf6043c611b3321f00e8db5a8bf421..a65a7332782025aeb8d5e3c97c0146c9a0a81c6e 100644 --- a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-intel-2015a.eb +++ b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.01-intel-2015a.eb @@ -22,7 +22,7 @@ dependencies = [ ('GSL', '1.15'), ('libxml2', '2.8.0', '-%s-%s' % (python, pyver)), (python, pyver), - ] +] # architecture arch = 'linuxx8664icc' diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.26-intel-2015a.eb b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.26-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..4f0b4fda48da4b8fcf859cdf836237c41d6f456c --- /dev/null +++ b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.26-intel-2015a.eb @@ -0,0 +1,57 @@ +name = 'ROOT' +version = 'v5.34.26' + +homepage = 'http://root.cern.ch/drupal/' +description = """The ROOT system provides a set of OO frameworks with all the functionality + needed to handle and analyze large amounts of data in a very efficient way.""" + +toolchain = {'name': 'intel', 'version': '2015a'} +toolchainopts = {'pic': True} + +sources = ['%(namelower)s_%(version)s.source.tar.gz'] +source_urls = ['ftp://root.cern.ch/root/'] +patches = [ + 'configure_FftwFromMkl_28.patch', + 'ROOT-v5_recent-ifort.patch', + 'ROOT-v5.34.26_libX.patch', +] + +python = 'Python' +pyver = '2.7.9' + +dependencies = [ + ('GSL', '1.16'), + ('Mesa', '10.4.5', '-%s-%s' % (python, pyver)), + ('libxml2', '2.9.2', '-%s-%s' % (python, pyver)), + ('PCRE', '8.36'), + ('CFITSIO', '3.37'), + ('freetype', '2.5.5'), + (python, pyver), + ('zlib', '1.2.8'), + ('libXft', '2.3.2', '-libX11-1.6.3'), + ('libXpm', '3.5.11'), + ('libXext', '1.3.3'), +] + +# use external ZLIB +preconfigopts = 'ZLIB=$EBROOTZLIB ' + +# architecture +arch = 'linuxx8664icc' + +# disable features +configopts = ' --disable-xrootd --disable-mysql --disable-krb5 --disable-odbc ' +configopts += ' --disable-oracle --disable-pgsql --disable-qt --disable-sqlite' +# enable features +configopts += ' --enable-unuran --enable-table --enable-explicitlink --enable-minuit2 --enable-roofit' +configopts += ' --with-gsl-incdir=$EBROOTGSL/include/gsl --with-gsl-libdir=$EBROOTGSL/lib' +configopts += ' --with-fftw3-incdir=$MKLROOT/mkl/include/fftw --with-fftw3-libdir=$MKLROOT/mkl/lib/intel64' +configopts += ' --with-xml-incdir=$EBROOTLIBXML2/include/libxml2/libxml --with-xml-libdir=$EBROOTLIBXML2/lib' +configopts += ' --with-python-libdir=$EBROOTPYTHON/lib' +configopts += ' --with-cfitsio-incdir=$EBROOTCFITSIO/include --with-cfitsio-libdir=$EBROOTCFITSIO/lib' +configopts += ' --with-opengl-incdir=$EBROOTMESA/include --with-opengl-libdir=$EBROOTMESA/lib' +configopts += ' --with-x11-libdir=$EBROOTLIBX11/lib --with-xext-libdir=$EBROOTLIBXEXT/lib' +configopts += ' --with-xft-libdir=$EBROOTLIBXFT/lib' +configopts += ' --with-xpm-incdir=$EBROOTLIBXPM/include --with-xpm-libdir=$EBROOTLIBXPM/lib' + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.26_libX.patch b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.26_libX.patch new file mode 100644 index 0000000000000000000000000000000000000000..bea67c521da7b84f52c11885353623eddb6dc9a9 --- /dev/null +++ b/easybuild/easyconfigs/r/ROOT/ROOT-v5.34.26_libX.patch @@ -0,0 +1,28 @@ +#Find custom located LIBX11, LIBXFT, and LIBXEXT includes +#December 08, 2015 by B. Hajgato (Vrije Universiteit Brussel) +--- configure.orig 2015-12-08 11:43:15.397124435 +0100 ++++ configure 2015-12-08 11:47:42.530999154 +0100 +@@ -2681,6 +2681,7 @@ + + check_header "X11/Xlib.h" "" \ + ${finkdir:+$finkdir/include} \ ++ $EBROOTLIBX11/include \ + /usr/include /usr/X11R6/include /usr/include/X11 /usr/openwin/include \ + /usr/local/include /usr/local/include/X11 /usr/local/X11R6/include \ + /usr/X11/include /usr/include/X11R5 +@@ -2707,6 +2708,7 @@ + + check_header "X11/Xft/Xft.h" "" \ + ${finkdir:+$finkdir/include} \ ++ $xftlibdir/../include \ + /usr/include /usr/X11R6/include /usr/include/X11 /usr/openwin/include \ + /usr/local/include /usr/local/include/X11 /usr/local/X11R6/include \ + /usr/X11/include /usr/include/X11R5 +@@ -2720,6 +2722,7 @@ + if test ! "x$arch" = "xaix5" ; then + check_header "X11/extensions/shape.h" "" \ + ${finkdir:+$finkdir/include} \ ++ $xextlibdir/../include \ + /usr/include /usr/X11R6/include /usr/include/X11 \ + /usr/openwin/include /usr/local/include /usr/local/include/X11 \ + /usr/local/X11R6/include /usr/X11/include /usr/include/X11R5 diff --git a/easybuild/easyconfigs/r/RSEM/RSEM-1.2.26-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/r/RSEM/RSEM-1.2.26-GNU-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..07868df9c117a861739c8ceb42df3cc877880363 --- /dev/null +++ b/easybuild/easyconfigs/r/RSEM/RSEM-1.2.26-GNU-4.9.3-2.25.eb @@ -0,0 +1,58 @@ +easyblock = 'MakeCp' + +name = 'RSEM' +version = '1.2.26' + +homepage = 'http://deweylab.github.io/RSEM/' +description = """RNA-Seq by Expectation-Maximization)""" + +toolchain = {'name': 'GNU', 'version': '4.9.3-2.25'} + +source_urls = ['https://github.com/deweylab/RSEM/archive/'] +sources = ['v%(version)s.tar.gz'] + +patches = ['RSEM-%(version)s_eb_provided_zlib.patch'] + +dependencies = [ + ('ncurses', '5.9'), + ('zlib', '1.2.8'), +] + +list_of_executables = [ + "rsem_perl_utils.pm", + "rsem-bam2readdepth", + "rsem-bam2wig", + "rsem-build-read-index", + "rsem-calculate-credibility-intervals", + "rsem-calculate-expression", + "rsem-control-fdr", + "rsem-extract-reference-transcripts", + "rsem-generate-data-matrix", + "rsem-generate-ngvector", + "rsem-gen-transcript-plots", + "rsem-get-unique", + "rsem-gff3-to-gtf", + "rsem-parse-alignments", + "rsem-plot-model", + "rsem-plot-transcript-wiggles", + "rsem-prepare-reference", + "rsem-preref", + "rsem-refseq-extract-primary-assembly", + "rsem-run-ebseq", + "rsem-run-em", + "rsem-run-gibbs", + "rsem-sam-validator", + "rsem-scan-for-paired-end-reads", + "rsem-simulate-reads", + "rsem-synthesis-reference-transcripts", + "rsem-tbam2gbam", +] + +files_to_copy = [(list_of_executables, "bin"), "WHAT_IS_NEW"] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in list_of_executables], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/r/RSEM/RSEM-1.2.26-intel-2015b.eb b/easybuild/easyconfigs/r/RSEM/RSEM-1.2.26-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..c63ccbd6bf6332abc0eb47a38f8db4a8daac5164 --- /dev/null +++ b/easybuild/easyconfigs/r/RSEM/RSEM-1.2.26-intel-2015b.eb @@ -0,0 +1,58 @@ +easyblock = 'MakeCp' + +name = 'RSEM' +version = '1.2.26' + +homepage = 'http://deweylab.github.io/RSEM/' +description = """RNA-Seq by Expectation-Maximization)""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['https://github.com/deweylab/RSEM/archive/'] +sources = ['v%(version)s.tar.gz'] + +patches = ['RSEM-%(version)s_eb_provided_zlib.patch'] + +dependencies = [ + ('ncurses', '5.9'), + ('zlib', '1.2.8'), +] + +list_of_executables = [ + "rsem_perl_utils.pm", + "rsem-bam2readdepth", + "rsem-bam2wig", + "rsem-build-read-index", + "rsem-calculate-credibility-intervals", + "rsem-calculate-expression", + "rsem-control-fdr", + "rsem-extract-reference-transcripts", + "rsem-generate-data-matrix", + "rsem-generate-ngvector", + "rsem-gen-transcript-plots", + "rsem-get-unique", + "rsem-gff3-to-gtf", + "rsem-parse-alignments", + "rsem-plot-model", + "rsem-plot-transcript-wiggles", + "rsem-prepare-reference", + "rsem-preref", + "rsem-refseq-extract-primary-assembly", + "rsem-run-ebseq", + "rsem-run-em", + "rsem-run-gibbs", + "rsem-sam-validator", + "rsem-scan-for-paired-end-reads", + "rsem-simulate-reads", + "rsem-synthesis-reference-transcripts", + "rsem-tbam2gbam", +] + +files_to_copy = [(list_of_executables, "bin"), "WHAT_IS_NEW"] + +sanity_check_paths = { + 'files': ["bin/%s" % x for x in list_of_executables], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/r/RSEM/RSEM-1.2.26_eb_provided_zlib.patch b/easybuild/easyconfigs/r/RSEM/RSEM-1.2.26_eb_provided_zlib.patch new file mode 100644 index 0000000000000000000000000000000000000000..c1f315d2d7a97b628b6d94c7656057c50f65a2c1 --- /dev/null +++ b/easybuild/easyconfigs/r/RSEM/RSEM-1.2.26_eb_provided_zlib.patch @@ -0,0 +1,162 @@ +#Use EB provided libz and use EB provided CXX and CXXFLAGS +# January 11, 2016 by B. Hajgato (Vrije Ubiversiteit Brussel) +--- Makefile.orig 2016-01-08 02:23:01.000000000 +0100 ++++ Makefile 2016-01-18 12:02:56.406105229 +0100 +@@ -1,6 +1,6 @@ +-CC = g++ +-CFLAGS = -Wall -c -I. +-COFLAGS = -Wall -O3 -ffast-math -c -I. ++#CC = g++ ++#CFLAGS = -Wall -c -I. ++COFLAGS = ${CXXFLAGS} -Wall -c -I. + PROGRAMS = rsem-extract-reference-transcripts rsem-synthesis-reference-transcripts rsem-preref rsem-parse-alignments rsem-build-read-index rsem-run-em rsem-tbam2gbam rsem-run-gibbs rsem-calculate-credibility-intervals rsem-simulate-reads rsem-bam2wig rsem-get-unique rsem-bam2readdepth rsem-sam-validator rsem-scan-for-paired-end-reads + + .PHONY : all ebseq clean +@@ -8,6 +8,8 @@ + all : $(PROGRAMS) + + sam/libbam.a : ++ sed -e 's/ -lz/ -L\$$\{EBROOTZLIB\}\/lib -lz/' -i sam/Makefile ++ sed -e 's/ -lz/ -L\$$\{EBROOTZLIB\}\/lib -lz/' -i sam/bcftools/Makefile + cd sam ; ${MAKE} all + + Transcript.h : utils.h +@@ -15,10 +17,10 @@ + Transcripts.h : utils.h my_assert.h Transcript.h + + rsem-extract-reference-transcripts : utils.h my_assert.h GTFItem.h Transcript.h Transcripts.h extractRef.cpp +- $(CC) -Wall -O3 extractRef.cpp -o rsem-extract-reference-transcripts ++ $(CXX) -Wall ${CXXFLAGS} extractRef.cpp -o rsem-extract-reference-transcripts + + rsem-synthesis-reference-transcripts : utils.h my_assert.h Transcript.h Transcripts.h synthesisRef.cpp +- $(CC) -Wall -O3 synthesisRef.cpp -o rsem-synthesis-reference-transcripts ++ $(CXX) -Wall ${CXXFLAGS} synthesisRef.cpp -o rsem-synthesis-reference-transcripts + + BowtieRefSeqPolicy.h : RefSeqPolicy.h + +@@ -28,10 +30,10 @@ + + + rsem-preref : preRef.o +- $(CC) preRef.o -o rsem-preref ++ $(CXX) preRef.o -o rsem-preref + + preRef.o : utils.h RefSeq.h Refs.h PolyARules.h RefSeqPolicy.h AlignerRefSeqPolicy.h preRef.cpp +- $(CC) $(COFLAGS) preRef.cpp ++ $(CXX) $(COFLAGS) preRef.cpp + + + SingleRead.h : Read.h +@@ -52,14 +54,14 @@ + + + rsem-parse-alignments : parseIt.o sam/libbam.a +- $(CC) -o rsem-parse-alignments parseIt.o sam/libbam.a -lz -lpthread ++ $(CXX) -o rsem-parse-alignments parseIt.o sam/libbam.a -L${EBROOTZLIB}/lib -lz -lpthread + + parseIt.o : utils.h GroupInfo.h Read.h SingleRead.h SingleReadQ.h PairedEndRead.h PairedEndReadQ.h SingleHit.h PairedEndHit.h HitContainer.h SamParser.h Transcripts.h sam/sam.h sam/bam.h parseIt.cpp +- $(CC) -Wall -O2 -c -I. parseIt.cpp ++ $(CXX) $(COFLAGS) parseIt.cpp + + + rsem-build-read-index : utils.h buildReadIndex.cpp +- $(CC) -O3 buildReadIndex.cpp -o rsem-build-read-index ++ $(CXX) ${CXXFLAGS} buildReadIndex.cpp -o rsem-build-read-index + + + simul.h : boost/random.hpp +@@ -87,57 +89,57 @@ + WriteResults.h : utils.h my_assert.h GroupInfo.h Transcript.h Transcripts.h RefSeq.h Refs.h Model.h SingleModel.h SingleQModel.h PairedEndModel.h PairedEndQModel.h + + rsem-run-em : EM.o sam/libbam.a +- $(CC) -o rsem-run-em EM.o sam/libbam.a -lz -lpthread ++ $(CXX) -o rsem-run-em EM.o sam/libbam.a -L${EBROOTZLIB}/lib -lz -lpthread + + EM.o : utils.h my_assert.h Read.h SingleRead.h SingleReadQ.h PairedEndRead.h PairedEndReadQ.h SingleHit.h PairedEndHit.h Model.h SingleModel.h SingleQModel.h PairedEndModel.h PairedEndQModel.h Refs.h GroupInfo.h HitContainer.h ReadIndex.h ReadReader.h Orientation.h LenDist.h RSPD.h QualDist.h QProfile.h NoiseQProfile.h ModelParams.h RefSeq.h RefSeqPolicy.h PolyARules.h Profile.h NoiseProfile.h Transcript.h Transcripts.h HitWrapper.h BamWriter.h sam/bam.h sam/sam.h simul.h sam_rsem_aux.h sampling.h boost/random.hpp WriteResults.h EM.cpp +- $(CC) $(COFLAGS) EM.cpp ++ $(CXX) $(COFLAGS) EM.cpp + + bc_aux.h : sam/bam.h + + BamConverter.h : utils.h my_assert.h sam/sam.h sam/bam.h sam_rsem_aux.h sam_rsem_cvt.h bc_aux.h Transcript.h Transcripts.h + + rsem-tbam2gbam : utils.h Transcripts.h Transcript.h bc_aux.h BamConverter.h sam/sam.h sam/bam.h sam/libbam.a sam_rsem_aux.h sam_rsem_cvt.h tbam2gbam.cpp sam/libbam.a +- $(CC) -O3 -Wall tbam2gbam.cpp sam/libbam.a -lz -lpthread -o $@ ++ $(CXX) ${CXXFLAGS} -Wall tbam2gbam.cpp sam/libbam.a -L${EBROOTZLIB}/lib -lz -lpthread -o $@ + + rsem-bam2wig : utils.h my_assert.h wiggle.h wiggle.o sam/libbam.a bam2wig.cpp +- $(CC) -O3 -Wall bam2wig.cpp wiggle.o sam/libbam.a -lz -lpthread -o $@ ++ $(CXX) ${CXXFLAGS} -Wall bam2wig.cpp wiggle.o sam/libbam.a -L${EBROOTZLIB}/lib -lz -lpthread -o $@ + + rsem-bam2readdepth : utils.h my_assert.h wiggle.h wiggle.o sam/libbam.a bam2readdepth.cpp +- $(CC) -O3 -Wall bam2readdepth.cpp wiggle.o sam/libbam.a -lz -lpthread -o $@ ++ $(CXX) ${CXXFLAGS} -Wall bam2readdepth.cpp wiggle.o sam/libbam.a -L${EBROOTZLIB}/lib -lz -lpthread -o $@ + + wiggle.o: sam/bam.h sam/sam.h wiggle.cpp wiggle.h +- $(CC) $(COFLAGS) wiggle.cpp ++ $(CXX) $(COFLAGS) wiggle.cpp + + rsem-simulate-reads : simulation.o +- $(CC) -o rsem-simulate-reads simulation.o ++ $(CXX) -o rsem-simulate-reads simulation.o + + simulation.o : utils.h Read.h SingleRead.h SingleReadQ.h PairedEndRead.h PairedEndReadQ.h Model.h SingleModel.h SingleQModel.h PairedEndModel.h PairedEndQModel.h Refs.h RefSeq.h GroupInfo.h Transcript.h Transcripts.h Orientation.h LenDist.h RSPD.h QualDist.h QProfile.h NoiseQProfile.h Profile.h NoiseProfile.h simul.h boost/random.hpp WriteResults.h simulation.cpp +- $(CC) $(COFLAGS) simulation.cpp ++ $(CXX) $(COFLAGS) simulation.cpp + + rsem-run-gibbs : Gibbs.o +- $(CC) -o rsem-run-gibbs Gibbs.o -lpthread ++ $(CXX) -o rsem-run-gibbs Gibbs.o -lpthread + + #some header files are omitted + Gibbs.o : utils.h my_assert.h boost/random.hpp sampling.h Model.h SingleModel.h SingleQModel.h PairedEndModel.h PairedEndQModel.h RefSeq.h RefSeqPolicy.h PolyARules.h Refs.h GroupInfo.h WriteResults.h Gibbs.cpp +- $(CC) $(COFLAGS) Gibbs.cpp ++ $(CXX) $(COFLAGS) Gibbs.cpp + + Buffer.h : my_assert.h + + rsem-calculate-credibility-intervals : calcCI.o +- $(CC) -o rsem-calculate-credibility-intervals calcCI.o -lpthread ++ $(CXX) -o rsem-calculate-credibility-intervals calcCI.o -lpthread + + #some header files are omitted + calcCI.o : utils.h my_assert.h boost/random.hpp sampling.h Model.h SingleModel.h SingleQModel.h PairedEndModel.h PairedEndQModel.h RefSeq.h RefSeqPolicy.h PolyARules.h Refs.h GroupInfo.h WriteResults.h Buffer.h calcCI.cpp +- $(CC) $(COFLAGS) calcCI.cpp ++ $(CXX) $(COFLAGS) calcCI.cpp + + rsem-get-unique : sam/bam.h sam/sam.h getUnique.cpp sam/libbam.a +- $(CC) -O3 -Wall getUnique.cpp sam/libbam.a -lz -lpthread -o $@ ++ $(CXX) ${CXXFLAGS} -Wall getUnique.cpp sam/libbam.a -L${EBROOTZLIB}/lib -lz -lpthread -o $@ + + rsem-sam-validator : sam/bam.h sam/sam.h my_assert.h samValidator.cpp sam/libbam.a +- $(CC) -O3 -Wall samValidator.cpp sam/libbam.a -lz -lpthread -o $@ ++ $(CXX) ${CXXFLAGS} -Wall samValidator.cpp sam/libbam.a -L${EBROOTZLIB}/lib -lz -lpthread -o $@ + + rsem-scan-for-paired-end-reads : sam/bam.h sam/sam.h my_assert.h scanForPairedEndReads.cpp sam/libbam.a +- $(CC) -O3 -Wall scanForPairedEndReads.cpp sam/libbam.a -lz -lpthread -o $@ ++ $(CXX) ${CXXFLAGS} -Wall scanForPairedEndReads.cpp sam/libbam.a -L${EBROOTZLIB}/lib -lz -lpthread -o $@ + + ebseq : + cd EBSeq ; ${MAKE} all +--- sam/Makefile.orig 2016-01-08 02:23:01.000000000 +0100 ++++ sam/Makefile 2016-01-18 12:08:43.769066188 +0100 +@@ -1,7 +1,7 @@ +-CC= gcc ++#CC= gcc + CFLAGS_EXTRA= + #CFLAGS_EXTRA= -L/usr/include/ncurses +-CFLAGS= -g -Wall -O2 $(CFLAGS_EXTRA) ++#CFLAGS= -g -Wall -O2 $(CFLAGS_EXTRA) + #LDFLAGS= -Wl,-rpath,\$$ORIGIN/../lib + DFLAGS_EXTRA= + #DFLAGS_EXTRA= -Dexpl=exp -Dlogl=log +--- sam/bcftools/Makefile.orig 2016-01-08 02:23:01.000000000 +0100 ++++ sam/bcftools/Makefile 2016-01-18 12:09:10.076063429 +0100 +@@ -1,5 +1,5 @@ +-CC= gcc +-CFLAGS= -g -Wall -O2 #-m64 #-arch ppc ++#CC= gcc ++#CFLAGS= -g -Wall -O2 #-m64 #-arch ppc + DFLAGS= -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE + LOBJS= bcf.o vcf.o bcfutils.o prob1.o em.o kfunc.o kmin.o index.o fet.o mut.o bcf2qcall.o + OMISC= .. diff --git a/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb b/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb index 418cc4118e796b57dd7cc5000bbb036aee8a3506..d0bbd7da765642af019f23f747fb780a86329269 100644 --- a/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/RSEQtools/RSEQtools-0.6-goolf-1.4.10.eb @@ -3,7 +3,7 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'RSEQtools' version = '0.6' @@ -30,7 +30,7 @@ prebuildopts = 'export BIOINFOGSLDIR=$EBROOTGSL && export BIOINFOCONFDIR=conf && prebuildopts += 'cd bios && make && make prod && cd - && ' # now move to "mrf" folder, re-export the needed env var and run make prebuildopts += 'cd mrf && export BIOINFOCONFDIR=../bios/conf/ && ' - + parallel = 1 # these are all the binaries compiled in "mrf" folder @@ -38,8 +38,8 @@ binary_files = ["psl2mrf", "bowtie2mrf", "singleExport2mrf", "mrfSubsetByTargetN "mrfQuantifier", "mrfAnnotationCoverage", "mrf2wig", "mrf2gff", "mrfSampler", "mrf2bgr", "wigSegmenter", "mrfMappingBias", "mrfSelectRegion", "mrfSelectSpliced", "mrfSelectAnnotated", "createSpliceJunctionLibrary", "gff2interval", "export2fastq", - "mergeTranscripts", "interval2gff", "interval2sequences", "bed2interval", - "interval2bed", "mrf2sam", "sam2mrf", "mrfValidate", "bgrQuantifier", + "mergeTranscripts", "interval2gff", "interval2sequences", "bed2interval", + "interval2bed", "mrf2sam", "sam2mrf", "mrfValidate", "bgrQuantifier", "bgrSegmenter", "mrfCountRegion"] files_to_copy = [ diff --git a/easybuild/easyconfigs/r/RcppArmadillo/RcppArmadillo-0.6.400.2.2-intel-2015b-R-3.2.1.eb b/easybuild/easyconfigs/r/RcppArmadillo/RcppArmadillo-0.6.400.2.2-intel-2015b-R-3.2.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..112c89bc799634704176ad613b74d8315cb6ad41 --- /dev/null +++ b/easybuild/easyconfigs/r/RcppArmadillo/RcppArmadillo-0.6.400.2.2-intel-2015b-R-3.2.1.eb @@ -0,0 +1,31 @@ +easyblock = 'RPackage' + +name = 'RcppArmadillo' +version = '0.6.400.2.2' + +homepage = 'http://cran.r-project.org/web/packages/%(name)s' +description = """'Armadillo' is a templated C++ linear algebra library that aims towards a good balance + between speed and ease of use""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [ + 'http://cran.r-project.org/src/contrib/', + 'http://cran.r-project.org/src/contrib/Archive/$(name)s/', +] +sources = ['%(name)s_%(version)s.tar.gz'] + +r = 'R' +rver = '3.2.1' +versionsuffix = '-%s-%s' % (r, rver) + +dependencies = [ + (r, rver), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['RcppArmadillo'], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.0-goolf-1.4.10.eb index d0fd6f17e3c0915097b22ac963599d144f1c54cf..513e8a388cad4cc22801075aeb4844d991c18d20 100644 --- a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.0-goolf-1.4.10.eb @@ -1,5 +1,5 @@ # With <3 for EasyBuild -# +# # EasyConfig for Ruby 2.1: # ---------------------------------------------------------------------------- # Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH @@ -24,7 +24,7 @@ source_urls = ['http://cache.ruby-lang.org/pub/ruby/'] sanity_check_paths = { 'files': ['bin/ruby', 'bin/rake', 'bin/gem', 'bin/testrb', 'bin/erb', 'bin/ri', 'bin/irb', 'bin/rdoc', 'lib/libruby.so.2.1.0', - 'lib/libruby-static.a', 'lib/libruby.so'], + 'lib/libruby-static.a', 'lib/libruby.%s' % SHLIB_EXT], 'dirs': ['lib/ruby/2.1.0', 'lib/ruby/gems', 'lib/pkgconfig', 'include/ruby-2.1.0'] } diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb index 32eca44aae4e0274e70b313c4042b78fae9e8a33..be5e8a20908be4f371b7b7508b6dc9074cc06abe 100644 --- a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.5-intel-2014b.eb @@ -1,5 +1,5 @@ # With <3 for EasyBuild -# +# # EasyConfig for Ruby 2.1: # ---------------------------------------------------------------------------- # Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH @@ -24,7 +24,7 @@ source_urls = ['http://cache.ruby-lang.org/pub/ruby/'] sanity_check_paths = { 'files': ['bin/ruby', 'bin/rake', 'bin/gem', 'bin/testrb', 'bin/erb', 'bin/ri', 'bin/irb', 'bin/rdoc', 'lib/libruby.so.2.1.0', - 'lib/libruby-static.a', 'lib/libruby.so'], + 'lib/libruby-static.a', 'lib/libruby.%s' % SHLIB_EXT], 'dirs': ['lib/ruby/2.1.0', 'lib/ruby/gems', 'lib/pkgconfig', 'include/ruby-2.1.0'] } diff --git a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.6.eb b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.6.eb index b2e22e2b135e26c65e67e1b1281f6988723e9cc1..8c87deb6f613880c53f2de8c6803a5fe3d00690b 100644 --- a/easybuild/easyconfigs/r/Ruby/Ruby-2.1.6.eb +++ b/easybuild/easyconfigs/r/Ruby/Ruby-2.1.6.eb @@ -1,5 +1,5 @@ # With <3 for EasyBuild -# +# # EasyConfig for Ruby 2.1: # ---------------------------------------------------------------------------- # Copyright: 2014 - Gregor Mendel Institute of Molecular Plant Biology GmBH diff --git a/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb b/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb index f306dfebf154139473e1c2876410b5c6470d5065..764e0a56544a32f545de656718e3f9c1f8246dd5 100644 --- a/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb +++ b/easybuild/easyconfigs/r/rCUDA/rCUDA-4.0.1_linux_64_Ubuntu10.04.eb @@ -25,8 +25,8 @@ toolchain = {'version': 'dummy', 'name': 'dummy'} sources = ['rCUDA_%(version)s%(versionsuffix)s.tar.gz'] sanity_check_paths = { - 'files': ["framework/common/rCUDAcommIB.so", "framework/common/rCUDAcommTCP.so", - "framework/rCUDAl/libcudart.so", "util/rCUDA_util.h"], + 'files': ["framework/common/rCUDAcommIB.%s" % SHLIB_EXT, "framework/common/rCUDAcommTCP.%s" % SHLIB_EXT, + "framework/rCUDAl/libcudart.%s" % SHLIB_EXT, "util/rCUDA_util.h"], 'dirs': [] } diff --git a/easybuild/easyconfigs/r/rCUDA/rCUDA-5.0_linux_64_scientificLinux6.eb b/easybuild/easyconfigs/r/rCUDA/rCUDA-5.0_linux_64_scientificLinux6.eb index 5169448939a74a30ce0d7edba841e7a3a773b97e..67667d2f43bcc42bb5b7511d4a971fc3b8905e1f 100644 --- a/easybuild/easyconfigs/r/rCUDA/rCUDA-5.0_linux_64_scientificLinux6.eb +++ b/easybuild/easyconfigs/r/rCUDA/rCUDA-5.0_linux_64_scientificLinux6.eb @@ -24,8 +24,8 @@ toolchain = {'version': 'dummy', 'name': 'dummy'} sources = ['rCUDA_%(version)s%(versionsuffix)s.tar.gz'] sanity_check_paths = { - 'files': ["framework/common/rCUDAcommIB.so", "framework/common/rCUDAcommTCP.so", - "framework/rCUDAl/libcudart.so", "framework/rCUDAd/getGPUNo"], + 'files': ["framework/common/rCUDAcommIB.%s" % SHLIB_EXT, "framework/common/rCUDAcommTCP.%s" % SHLIB_EXT, + "framework/rCUDAl/libcudart.%s" % SHLIB_EXT, "framework/rCUDAd/getGPUNo"], 'dirs': [] } diff --git a/easybuild/easyconfigs/r/rSeq/rSeq-0.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/r/rSeq/rSeq-0.2.0-goolf-1.4.10.eb index 21ca0b75f99b034a99d6b185dcdbaa83f61e46bb..515ad4d74a56684ec38f4cc1faa6f368b1942a3c 100644 --- a/easybuild/easyconfigs/r/rSeq/rSeq-0.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/r/rSeq/rSeq-0.2.0-goolf-1.4.10.eb @@ -3,7 +3,7 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'rSeq' version = '0.2.0' diff --git a/easybuild/easyconfigs/r/randrproto/randrproto-1.5.0-intel-2015b.eb b/easybuild/easyconfigs/r/randrproto/randrproto-1.5.0-intel-2015b.eb index 2e61ea7155eec71f0efb9bea445f0645b9300e4a..cb2cc76a3b8e79dcc4f91cee0e9f2f684b141640 100644 --- a/easybuild/easyconfigs/r/randrproto/randrproto-1.5.0-intel-2015b.eb +++ b/easybuild/easyconfigs/r/randrproto/randrproto-1.5.0-intel-2015b.eb @@ -12,8 +12,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/extensions/%s' % x for x in ['randr.h', 'randrproto.h']], - 'dirs' : [], + 'files': ['include/X11/extensions/%s' % x for x in ['randr.h', 'randrproto.h']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/r/renderproto/renderproto-0.11-foss-2014b.eb b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-foss-2014b.eb index f073ec9749dfeba00799770340fde85dcf17c55e..3119cd29b721b57ae53f946768735dedd3331478 100644 --- a/easybuild/easyconfigs/r/renderproto/renderproto-0.11-foss-2014b.eb +++ b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-foss-2014b.eb @@ -13,8 +13,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/extensions/%s' % x for x in ['render.h', 'renderproto.h']], - 'dirs' : [], + 'files': ['include/X11/extensions/%s' % x for x in ['render.h', 'renderproto.h']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2014b.eb b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2014b.eb index 34ed4ccca7e3d0564de360ffb0d3e4d59b0d75e7..9d7f0c2a916d893acf619aebfdf89b6d32ca8ac5 100644 --- a/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2014b.eb +++ b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2014b.eb @@ -13,8 +13,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/extensions/%s' % x for x in ['render.h', 'renderproto.h']], - 'dirs' : [], + 'files': ['include/X11/extensions/%s' % x for x in ['render.h', 'renderproto.h']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2015a.eb b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2015a.eb index b1d493612160c91e60b7fcce5028a0979d756d47..87042e0e65a33495253997ade34dbd8fe1e928e5 100644 --- a/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2015a.eb +++ b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2015a.eb @@ -13,8 +13,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/extensions/%s' % x for x in ['render.h', 'renderproto.h']], - 'dirs' : [], + 'files': ['include/X11/extensions/%s' % x for x in ['render.h', 'renderproto.h']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2015b.eb b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2015b.eb index 6d58ade80ab8eb186f3e9f907275c1041689b3cf..b16c201ac171d94b2b57a1b4f50ff493b9835986 100644 --- a/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2015b.eb +++ b/easybuild/easyconfigs/r/renderproto/renderproto-0.11-intel-2015b.eb @@ -13,8 +13,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/extensions/%s' % x for x in ['render.h', 'renderproto.h']], - 'dirs' : [], + 'files': ['include/X11/extensions/%s' % x for x in ['render.h', 'renderproto.h']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/r/rpmrebuild/rpmrebuild-2.11.eb b/easybuild/easyconfigs/r/rpmrebuild/rpmrebuild-2.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..5b2154b1464bc23344220edc8de9c09fccc8b7c2 --- /dev/null +++ b/easybuild/easyconfigs/r/rpmrebuild/rpmrebuild-2.11.eb @@ -0,0 +1,32 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2016 Forschungszentrum Juelich GmbH +# Authors:: Damian Alvarez +# License:: MIT/GPL +# $Id$ +## + +easyblock = "Tarball" + +name = "rpmrebuild" +version = "2.11" + +homepage = 'http://rpmrebuild.sourceforge.net/' +description = """rpmrebuild is a tool to build an RPM file from a package that has already been + installed in a basic use""" + +toolchain = {'version': 'dummy', 'name': 'dummy'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +modextrapaths = {'PATH': ['']} +modextravars = {'RPMREBUILD_ROOT_DIR': '%(installdir)s'} + +sanity_check_paths = { + 'files': ["rpmrebuild"], + 'dirs': [] +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/r/rpy2/rpy2-2.4.3-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/r/rpy2/rpy2-2.4.3-goolf-1.4.10-Python-2.7.3.eb index 463de39baadc9e3a3b3320449d899e95d8732faa..7c80c0fb249c594e767de88246cac44779ddf302 100644 --- a/easybuild/easyconfigs/r/rpy2/rpy2-2.4.3-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/r/rpy2/rpy2-2.4.3-goolf-1.4.10-Python-2.7.3.eb @@ -12,7 +12,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['https://pypi.python.org/packages/source/r/%(name)s'] sources = [SOURCE_TAR_GZ] - + python = 'Python' pyver = '2.7.3' pyshortver = '.'.join(pyver.split('.')[:2]) diff --git a/easybuild/easyconfigs/r/rpy2/rpy2-2.4.3-goolf-1.4.10-Python-3.2.3.eb b/easybuild/easyconfigs/r/rpy2/rpy2-2.4.3-goolf-1.4.10-Python-3.2.3.eb index 5287791d7cab1724223d2e7175245647c4bb5b53..2ad8592b89d2329b0de12bcaffb45ba6ca508fb6 100644 --- a/easybuild/easyconfigs/r/rpy2/rpy2-2.4.3-goolf-1.4.10-Python-3.2.3.eb +++ b/easybuild/easyconfigs/r/rpy2/rpy2-2.4.3-goolf-1.4.10-Python-3.2.3.eb @@ -12,7 +12,7 @@ toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['https://pypi.python.org/packages/source/r/%(name)s'] sources = [SOURCE_TAR_GZ] - + python = 'Python' pyver = '3.2.3' pyshortver = '.'.join(pyver.split('.')[:2]) diff --git a/easybuild/easyconfigs/s/S-Lang/S-Lang-2.3.0-GCC-4.9.2.eb b/easybuild/easyconfigs/s/S-Lang/S-Lang-2.3.0-GCC-4.9.2.eb index d5d02f5692e0d610be266a43d00cf2940b5af635..ec3e8a22d530f33f91e242fcf1ecd7a1021519b4 100644 --- a/easybuild/easyconfigs/s/S-Lang/S-Lang-2.3.0-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/s/S-Lang/S-Lang-2.3.0-GCC-4.9.2.eb @@ -15,7 +15,7 @@ sources = ['slang-%(version)s.tar.gz'] source_urls = ['http://www.jedsoft.org/releases/slang/'] sanity_check_paths = { - 'files': ['include/slang.h', 'bin/slsh', 'lib/libslang.so'], + 'files': ['include/slang.h', 'bin/slsh', 'lib/libslang.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb index a7bfe7aa5180bdbe2c3d38820135c028a99ecc6e..37118ac1e183b33c640fcc6b1be9add4cb8b32b5 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-foss-2014b.eb @@ -28,6 +28,6 @@ dependencies = [ ('zlib', '1.2.7'), ] -parallel = 1 +parallel = 1 moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb index 48efe7e0a744ef5152580ddc8ea865e8793fe98c..ffeec869d84fc1e180f1e5fda0614df6be32c359 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-goolf-1.4.10.eb @@ -30,6 +30,6 @@ dependencies = [ ('zlib', '1.2.7'), ] -parallel = 1 +parallel = 1 moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb index 9993040cdb01438adf3b44db6339cba883e4c31f..f6766acbd26aac25f5c3b84c9726230c6851ba52 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2014b.eb @@ -30,6 +30,6 @@ dependencies = [ ('zlib', '1.2.7'), ] -parallel = 1 +parallel = 1 moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2015a.eb index 91e58c27f084775489ef7213be45f4e4df14f20a..805874583a9b3a81d667859ea92480f6d94c5e2e 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.1-intel-2015a.eb @@ -30,6 +30,6 @@ dependencies = [ ('zlib', '1.2.8'), ] -parallel = 1 +parallel = 1 moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a-HTSlib-1.2.1.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a-HTSlib-1.2.1.eb index c7743a27f3fdafbebe67abfde4f1f8bfe4e15f3f..3835083700e6a61402f7f002d7477c15b2305ada 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a-HTSlib-1.2.1.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a-HTSlib-1.2.1.eb @@ -33,6 +33,6 @@ dependencies = [ ('zlib', '1.2.8'), ] -parallel = 1 +parallel = 1 moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a.eb index 227c52d47d092c405f6a9edfba4e8db34ad34e76..be9360b7e58260f70071ebc91dce097c3a1a5d0f 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015a.eb @@ -28,6 +28,6 @@ dependencies = [ ('zlib', '1.2.8'), ] -parallel = 1 +parallel = 1 moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..598ba6e51e620a64765c5152f8895f4b84789e15 --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-foss-2015b.eb @@ -0,0 +1,33 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +## + +name = 'SAMtools' +version = '1.2' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'optarch': True, 'pic': True} + +sources = [SOURCELOWER_TAR_BZ2] +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] + +patches = ['SAMtools-1.1_Makefile.patch'] + +dependencies = [ + ('ncurses', '5.9'), + ('zlib', '1.2.8'), +] + +parallel = 1 + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.4.10.eb index 15cb82566ef6959e7e84f8c884349f59a5f7b64c..97a147d8ecfe0b29fc5b1dd0ffbb9314ec13f560 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.4.10.eb @@ -28,6 +28,6 @@ dependencies = [ ('zlib', '1.2.7'), ] -parallel = 1 +parallel = 1 moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.7.20.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.7.20.eb index 695f8c6b45dd56a582adb2f1b0dfbbaee8e29bf9..e3ff7301d8bf43ab5f1a5dc47b841caf6381d52a 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-goolf-1.7.20.eb @@ -28,6 +28,6 @@ dependencies = [ ('zlib', '1.2.8'), ] -parallel = 1 +parallel = 1 moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015a-HTSlib-1.2.1.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015a-HTSlib-1.2.1.eb index ccd0092201647c9ce353a1aa5cd40ba127ed1a16..289687681922c87ccefe6248634cd0b485007881 100644 --- a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015a-HTSlib-1.2.1.eb +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.2-intel-2015a-HTSlib-1.2.1.eb @@ -33,6 +33,6 @@ dependencies = [ ('zlib', '1.2.8'), ] -parallel = 1 +parallel = 1 moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2015b.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..4ff251eb7303ffd4196818b02532a2dcdc83f843 --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3-foss-2015b.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Robert Schmidt , Cedric Laczny , Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +## +name = 'SAMtools' +version = '1.3' + +homepage = 'http://www.htslib.org/' +description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, + including sorting, merging, indexing and generating alignments in a per-position format.""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] +sources = [SOURCELOWER_TAR_BZ2] + +# Patch Makefile to link against zlib provided by EB +patches = ['SAMtools-1.3_Makefile.patch'] + +dependencies = [ + ('ncurses', '5.9'), + ('zlib', '1.2.8'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3_Makefile.patch b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3_Makefile.patch new file mode 100644 index 0000000000000000000000000000000000000000..9b97a35bd66cdf073e58695188468b332d59c161 --- /dev/null +++ b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.3_Makefile.patch @@ -0,0 +1,18 @@ +--- Makefile.orig 2016-01-11 15:26:44.436740394 +1030 ++++ Makefile 2016-01-11 15:25:55.588263958 +1030 +@@ -83,13 +83,13 @@ + # TODO Use configure or htslib.pc to add -rdynamic/-ldl conditionally + ALL_CPPFLAGS = $(DFLAGS) -I. $(HTSLIB_CPPFLAGS) $(CPPFLAGS) + ALL_LDFLAGS = -rdynamic $(HTSLIB_LDFLAGS) $(LDFLAGS) +-ALL_LIBS = -lz -ldl $(LIBS) ++ALL_LIBS = -L$(EBROOTZLIB)/lib -lz -ldl $(LIBS) + + # Usually config.mk and config.h are generated by running configure + # or config.status, but if those aren't used create defaults here. + + config.mk: +- @sed -e '/^prefix/,/^LIBS/d;s/@Hsource@//;s/@Hinstall@/#/;s#@HTSDIR@#htslib-1.3#g;s/@HTSLIB_CPPFLAGS@/-I$$(HTSDIR)/g;s/@CURSES_LIB@/-lcurses/g' config.mk.in > $@ ++ @sed -e '/^prefix/,/^LIBS/d;s/@Hsource@//;s/@Hinstall@/#/;s#@HTSDIR@#htslib-1.3#g;s/@HTSLIB_CPPFLAGS@/-I$$(HTSDIR)/g;s/@CURSES_LIB@/-L$$(EBROOTNCURSES)\/lib -lcurses/g' config.mk.in > $@ + + config.h: + echo '/* Basic config.h generated by Makefile */' > $@ diff --git a/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb b/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb index f442020c76eb4e88fd0ab75f8e512439db8a9a25..d732b448eb4c483f267e48bbb72369db9030efad 100644 --- a/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/s/SCALCE/SCALCE-2.7-GCC-4.8.2.eb @@ -30,7 +30,7 @@ buildopts = '-C zlib-1.2.8 && make all' files_to_copy = [(['scalce'], 'bin')] sanity_check_paths = { - 'files': ["bin/scalce"], + 'files': ["bin/scalce"], 'dirs': [] } diff --git a/easybuild/easyconfigs/s/SCDE/SCDE-20151209-intel-2015b-R-3.2.1.eb b/easybuild/easyconfigs/s/SCDE/SCDE-20151209-intel-2015b-R-3.2.1.eb new file mode 100644 index 0000000000000000000000000000000000000000..6451471e7438205ac8069f350211698a452a67ff --- /dev/null +++ b/easybuild/easyconfigs/s/SCDE/SCDE-20151209-intel-2015b-R-3.2.1.eb @@ -0,0 +1,29 @@ +easyblock = 'RPackage' + +name = 'SCDE' +version = '20151209' + +homepage = 'http://pklab.med.harvard.edu/scde' +description = """R package for analyzing single-cell RNA-seq data""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['https://github.com/hms-dbmi/scde/archive/'] +sources = ['db56b09.tar.gz'] + +rver = '3.2.1' +versionsuffix = '-R-%s' % rver + +dependencies = [ + ('R', rver), + ('R-bundle-Bioconductor', '3.1', versionsuffix), + # newer version of RcppArmadillo required than the one included in R module + ('RcppArmadillo', '0.6.400.2.2', versionsuffix), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['%(namelower)s'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/s/SCOOP/SCOOP-0.6.2-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/s/SCOOP/SCOOP-0.6.2-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..057612c575f8114fe9181e791b812bbcff57086b --- /dev/null +++ b/easybuild/easyconfigs/s/SCOOP/SCOOP-0.6.2-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,30 @@ +easyblock = 'PythonPackage' + +name = 'SCOOP' +version = '0.6.2' + +homepage = 'http://code.google.com/p/scoop/' +description = """SCOOP (Scalable COncurrent Operations in Python) is a distributed task module + allowing concurrent parallel programming on various environments, from heterogeneous grids to supercomputers.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ["http://scoop.googlecode.com/files/"] +sources = ['%(namelower)s-%(version)s.release.tar.gz'] + +pyver = '2.7.10' +pyshortver = '.'.join(pyver.split('.')[:2]) +versionsuffix = '-Python-%s' % pyver + +dependencies = [ + ('Python', pyver), # python with builtin argparse + ('Greenlet', '0.4.2', versionsuffix), + ('PyZMQ', '15.1.0', versionsuffix + '-zmq4'), +] + +sanity_check_paths = { + 'dirs': [], + 'files': ['lib/python%(pyv)s/site-packages/scoop-%%(version)s.release-py%(pyv)s.egg' % {'pyv': pyshortver}], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-foss-2016a.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..431d04e9dfb3bd4d55d8441f4ffcaf5779ec8e28 --- /dev/null +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-foss-2016a.eb @@ -0,0 +1,14 @@ +name = 'SCOTCH' +version = '6.0.4' + +homepage = 'http://gforge.inria.fr/projects/scotch/' +description = """Software package and libraries for sequential and parallel graph partitioning, +static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.""" + +toolchain = {'name': 'foss', 'version': '2016a'} +toolchainopts = {'pic': True} + +source_urls = ['http://gforge.inria.fr/frs/download.php/file/34618/'] +sources = ['%(namelower)s_%(version)s.tar.gz'] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-intel-2015b-64bitint.eb b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-intel-2015b-64bitint.eb index edac27cad0652311b79f5e52193e7c3d7d230b24..ba1a0a43d1dd50f8beca796eae3859f0ac13f27a 100644 --- a/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-intel-2015b-64bitint.eb +++ b/easybuild/easyconfigs/s/SCOTCH/SCOTCH-6.0.4-intel-2015b-64bitint.eb @@ -1,6 +1,6 @@ name = 'SCOTCH' version = '6.0.4' -versionsuffix = '-64bitint' +versionsuffix = '-64bitint' homepage = 'http://gforge.inria.fr/projects/scotch/' description = """Software package and libraries for sequential and parallel graph partitioning, diff --git a/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb b/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb index b97860755cfac80a288c20b387702ccef0f079ca..cd91fac4e45cd58bc024da27d09b3de8b5574afc 100644 --- a/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb +++ b/easybuild/easyconfigs/s/SDCC/SDCC-3.3.0.eb @@ -35,10 +35,10 @@ builddependencies = [ configopts = "--disable-pic14-port --disable-pic16-port" sanity_check_paths = { - 'files': ["bin/sdcc"], + 'files': ["bin/sdcc"], 'dirs': [] } -runtest = 'installcheck' # N.B. the current Makefile contains just a placeholder and is empty +runtest = 'installcheck' # N.B. the current Makefile contains just a placeholder and is empty moduleclass = 'compiler' diff --git a/easybuild/easyconfigs/s/SIBELia/SIBELia-3.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SIBELia/SIBELia-3.0.4-goolf-1.4.10.eb index 2bba2e77c88f80f45d30d31efc7314674ca314bd..5c52477972cba40987510d41d6c6d1581400dbc4 100644 --- a/easybuild/easyconfigs/s/SIBELia/SIBELia-3.0.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SIBELia/SIBELia-3.0.4-goolf-1.4.10.eb @@ -31,4 +31,3 @@ sanity_check_paths = { } moduleclass = 'bio' - diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.9.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.9.eb index 2c2c1d2e6afa0cd35c5820862b885bb61d3278ab..49346a9d1c3e09f8e1e220b9bb52badcb4ee6be3 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.9.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-goolf-1.5.14-Python-2.7.9.eb @@ -9,7 +9,7 @@ version = '4.16.4' homepage = 'http://www.riverbankcomputing.com/software/sip/' description = """SIP is a tool that makes it very easy to create Python bindings for C and C++ libraries.""" -toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchain = {'name': 'goolf', 'version': '1.5.14'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://sourceforge.net/projects/pyqt/files/sip/sip-%(version)s'] @@ -26,7 +26,8 @@ configopts += "--destdir %%(installdir)s/lib/python%s/site-packages" % pyshortve sanity_check_paths = { 'files': ['bin/sip', 'include/sip.h'] + - ['lib/python%s/site-packages/%s' % (pyshortver, x) for x in ['sip.so', 'sipconfig.py', 'sipdistutils.py']], + ['lib/python%s/site-packages/%s' % (pyshortver, x) + for x in ['sip.%s' % SHLIB_EXT, 'sipconfig.py', 'sipdistutils.py']], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-intel-2015a-Python-2.7.9.eb index db47a517caf321cc1739273ad1f3e8b39ee9221e..e61810f5fd719695670a96fcaf4a9a49f47f70e9 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.16.4-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.4-intel-2015a-Python-2.7.9.eb @@ -9,7 +9,7 @@ version = '4.16.4' homepage = 'http://www.riverbankcomputing.com/software/sip/' description = """SIP is a tool that makes it very easy to create Python bindings for C and C++ libraries.""" -toolchain = {'name': 'intel', 'version': '2015a'} +toolchain = {'name': 'intel', 'version': '2015a'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://sourceforge.net/projects/pyqt/files/sip/sip-%(version)s'] @@ -26,7 +26,8 @@ configopts += "--destdir %%(installdir)s/lib/python%s/site-packages" % pyshortve sanity_check_paths = { 'files': ['bin/sip', 'include/sip.h'] + - ['lib/python%s/site-packages/%s' % (pyshortver, x) for x in ['sip.so', 'sipconfig.py', 'sipdistutils.py']], + ['lib/python%s/site-packages/%s' % (pyshortver, x) + for x in ['sip.%s' % SHLIB_EXT, 'sipconfig.py', 'sipdistutils.py']], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-foss-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-foss-2015a-Python-2.7.9.eb index c03c93c847b615b55e879e7fbe3fdf9400bd04ff..eed3ec9cee2bcd3192cf420e752025087e5edb23 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-foss-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-foss-2015a-Python-2.7.9.eb @@ -26,7 +26,8 @@ configopts += "--destdir %%(installdir)s/lib/python%s/site-packages" % pyshortve sanity_check_paths = { 'files': ['bin/sip', 'include/sip.h'] + - ['lib/python%s/site-packages/%s' % (pyshortver, x) for x in ['sip.so', 'sipconfig.py', 'sipdistutils.py']], + ['lib/python%s/site-packages/%s' % (pyshortver, x) + for x in ['sip.%s' % SHLIB_EXT, 'sipconfig.py', 'sipdistutils.py']], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2014b-Python-2.7.8.eb index d266d5f8e0f8b5e3736e7ff661248f8b731c9c3b..517317038b1a4653c3d031057ad96987c5d28491 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2014b-Python-2.7.8.eb @@ -26,7 +26,8 @@ configopts += "--destdir %%(installdir)s/lib/python%s/site-packages" % pyshortve sanity_check_paths = { 'files': ['bin/sip', 'include/sip.h'] + - ['lib/python%s/site-packages/%s' % (pyshortver, x) for x in ['sip.so', 'sipconfig.py', 'sipdistutils.py']], + ['lib/python%s/site-packages/%s' % (pyshortver, x) + for x in ['sip.%s' % SHLIB_EXT, 'sipconfig.py', 'sipdistutils.py']], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2015a-Python-2.7.9.eb index 4fb9048408c8829413b88e106df5276d6d4ee4d0..b2e1479cba032d634c25261e72fadb3f0e4bd471 100644 --- a/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/s/SIP/SIP-4.16.8-intel-2015a-Python-2.7.9.eb @@ -26,7 +26,8 @@ configopts += "--destdir %%(installdir)s/lib/python%s/site-packages" % pyshortve sanity_check_paths = { 'files': ['bin/sip', 'include/sip.h'] + - ['lib/python%s/site-packages/%s' % (pyshortver, x) for x in ['sip.so', 'sipconfig.py', 'sipdistutils.py']], + ['lib/python%s/site-packages/%s' % (pyshortver, x) + for x in ['sip.%s' % SHLIB_EXT, 'sipconfig.py', 'sipdistutils.py']], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/SLEPc/SLEPc-3.6.2-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/s/SLEPc/SLEPc-3.6.2-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..775feb38377e8472ef188e57d8368aa5a883357b --- /dev/null +++ b/easybuild/easyconfigs/s/SLEPc/SLEPc-3.6.2-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,21 @@ +name = 'SLEPc' +version = '3.6.2' +versionsuffix = '-Python-2.7.11' + +homepage = 'http://www.grycap.upv.es/slepc/' +description = """SLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution of + large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for either + standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a partial + SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'usempi': True} + +source_urls = ['http://www.grycap.upv.es/slepc/download/download.php?filename='] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [('PETSc', '3.6.3', versionsuffix)] + +petsc_arch = 'installed-arch-linux2-c-opt' + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb index a2509710abb36633ea4cdbab38200147041e4b3e..ed0395223c0f987f3529b023e390ac0bd151bfa7 100644 --- a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-goolf-1.4.10.eb @@ -25,7 +25,7 @@ source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['simread', 'smalt', 'mixreads','readstats']], + 'files': ['bin/%s' % x for x in ['simread', 'smalt', 'mixreads', 'readstats']], 'dirs': [] } diff --git a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb index 97b9385894700888f26c8d1ee8d341218b4013ad..16d05cf3415d4629cc248f5ca3056d83d4f86e8d 100644 --- a/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SMALT/SMALT-0.7.5-ictce-5.3.0.eb @@ -25,7 +25,7 @@ source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ['simread', 'smalt', 'mixreads','readstats']], + 'files': ['bin/%s' % x for x in ['simread', 'smalt', 'mixreads', 'readstats']], 'dirs': [] } diff --git a/easybuild/easyconfigs/s/SOAPaligner/SOAPaligner-2.21_Linux-x86_64.eb b/easybuild/easyconfigs/s/SOAPaligner/SOAPaligner-2.21_Linux-x86_64.eb index 5cf6c32e4418bb4e96374270c28621a039a3a1c6..67f7cd27da2a5e2797fae76372864fe19f2b66c9 100644 --- a/easybuild/easyconfigs/s/SOAPaligner/SOAPaligner-2.21_Linux-x86_64.eb +++ b/easybuild/easyconfigs/s/SOAPaligner/SOAPaligner-2.21_Linux-x86_64.eb @@ -3,7 +3,7 @@ # Swiss Institute of Bioinformatics # Biozentrum - University of Basel -easyblock='MakeCp' +easyblock = 'MakeCp' name = 'SOAPaligner' version = '2.21' @@ -19,7 +19,7 @@ toolchain = {'name': 'dummy', 'version': 'dummy'} source_urls = ['http://soap.genomics.org.cn/down/'] sources = ['soap%(version)srelease.tar.gz'] -# only Linux-x86_64 binaries are provided so we skip build step. +# only Linux-x86_64 binaries are provided so we skip build step. # We just use the MakeCp block to copy each file to the right destination folder skipsteps = ['build'] diff --git a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-goolf-1.4.10.eb index 9a31af40cdf96f3061732c3220e788dba50ecffd..7e9207e3f13e4ff146a351b62b9b96ae44342721 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-goolf-1.4.10.eb @@ -1,5 +1,5 @@ # With <3 for EasyBuild -# +# # EasyConfig for SOAPdenovo2: # ---------------------------------------------------------------------------- # Copyright: 2013 - Gregor Mendel Institute of Molecular Plant Biology GmBH @@ -17,7 +17,7 @@ description = """SOAPdenovo is a novel short-read assembly method that can build de novo draft assembly for human-sized genomes. The program is specially designed to assemble Illumina short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. - SOAPdenovo2 is the successor of SOAPdenovo.""" + SOAPdenovo2 is the successor of SOAPdenovo.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True, 'pic': True} @@ -30,7 +30,7 @@ patches = ['SOAPdenovo2-fix-unistd-includes.patch'] # parallel build is broken maxparallel = 1 -files_to_copy = [(['SOAPdenovo-127mer','SOAPdenovo-63mer'], 'bin')] +files_to_copy = [(['SOAPdenovo-127mer', 'SOAPdenovo-63mer'], 'bin')] sanity_check_paths = { 'files': ['bin/SOAPdenovo-63mer', 'bin/SOAPdenovo-127mer'], diff --git a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.3.0.eb b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.3.0.eb index 98fc2a7d4805c1a826db1f47610191c9f097fe6c..e74ff0cb830354a3fe9c5540e96fc400d7f0f5a8 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.3.0.eb @@ -1,5 +1,5 @@ # With <3 for EasyBuild -# +# # EasyConfig for SOAPdenovo2: # ---------------------------------------------------------------------------- # Copyright: 2013 - Gregor Mendel Institute of Molecular Plant Biology GmBH @@ -17,7 +17,7 @@ description = """SOAPdenovo is a novel short-read assembly method that can build de novo draft assembly for human-sized genomes. The program is specially designed to assemble Illumina short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. - SOAPdenovo2 is the successor of SOAPdenovo.""" + SOAPdenovo2 is the successor of SOAPdenovo.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'optarch': True, 'pic': True} @@ -30,7 +30,7 @@ patches = ['SOAPdenovo2-fix-unistd-includes.patch'] # parallel build is broken maxparallel = 1 -files_to_copy = [(['SOAPdenovo-127mer','SOAPdenovo-63mer'], 'bin')] +files_to_copy = [(['SOAPdenovo-127mer', 'SOAPdenovo-63mer'], 'bin')] sanity_check_paths = { 'files': ['bin/SOAPdenovo-63mer', 'bin/SOAPdenovo-127mer'], diff --git a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.5.0.eb index 4f0d8353aba40358ca43eebab9092fb7af47eaae..6e27e80aadd2c7f0c519d9472912f83dd237de8b 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-ictce-5.5.0.eb @@ -1,5 +1,5 @@ # With <3 for EasyBuild -# +# # EasyConfig for SOAPdenovo2: # ---------------------------------------------------------------------------- # Copyright: 2013 - Gregor Mendel Institute of Molecular Plant Biology GmBH @@ -17,7 +17,7 @@ description = """SOAPdenovo is a novel short-read assembly method that can build de novo draft assembly for human-sized genomes. The program is specially designed to assemble Illumina short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. - SOAPdenovo2 is the successor of SOAPdenovo.""" + SOAPdenovo2 is the successor of SOAPdenovo.""" toolchain = {'name': 'ictce', 'version': '5.5.0'} toolchainopts = {'optarch': True, 'pic': True} @@ -30,7 +30,7 @@ patches = ['SOAPdenovo2-fix-unistd-includes.patch'] # parallel build is broken maxparallel = 1 -files_to_copy = [(['SOAPdenovo-127mer','SOAPdenovo-63mer'], 'bin')] +files_to_copy = [(['SOAPdenovo-127mer', 'SOAPdenovo-63mer'], 'bin')] sanity_check_paths = { 'files': ['bin/SOAPdenovo-63mer', 'bin/SOAPdenovo-127mer'], diff --git a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-intel-2015a.eb b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-intel-2015a.eb index 1761063fd76ef1b21d3fd27e373709897cc467bd..d56a8ae4dd5e607609c7570cc5bf9ee1ff492e30 100644 --- a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-intel-2015a.eb @@ -1,5 +1,5 @@ # With <3 for EasyBuild -# +# # EasyConfig for SOAPdenovo2: # ---------------------------------------------------------------------------- # Copyright: 2013 - Gregor Mendel Institute of Molecular Plant Biology GmBH @@ -17,7 +17,7 @@ description = """SOAPdenovo is a novel short-read assembly method that can build de novo draft assembly for human-sized genomes. The program is specially designed to assemble Illumina short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. - SOAPdenovo2 is the successor of SOAPdenovo.""" + SOAPdenovo2 is the successor of SOAPdenovo.""" toolchain = {'name': 'intel', 'version': '2015a'} toolchainopts = {'optarch': True, 'pic': True} @@ -30,7 +30,7 @@ patches = ['SOAPdenovo2-fix-unistd-includes.patch'] # parallel build is broken maxparallel = 1 -files_to_copy = [(['SOAPdenovo-127mer','SOAPdenovo-63mer'], 'bin')] +files_to_copy = [(['SOAPdenovo-127mer', 'SOAPdenovo-63mer'], 'bin')] sanity_check_paths = { 'files': ['bin/SOAPdenovo-63mer', 'bin/SOAPdenovo-127mer'], diff --git a/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-intel-2015b.eb b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..4948eef292fb7e84a996817ffa1546e1c429a759 --- /dev/null +++ b/easybuild/easyconfigs/s/SOAPdenovo2/SOAPdenovo2-r240-intel-2015b.eb @@ -0,0 +1,40 @@ +# With <3 for EasyBuild +# +# EasyConfig for SOAPdenovo2: +# ---------------------------------------------------------------------------- +# Copyright: 2013 - Gregor Mendel Institute of Molecular Plant Biology GmBH +# License: MIT +# Authors: Petar Forai +# ---------------------------------------------------------------------------- + +easyblock = "MakeCp" + +name = 'SOAPdenovo2' +version = 'r240' + +homepage = 'http://soap.genomics.org.cn/index.html' +description = """SOAPdenovo is a novel short-read assembly method that can build a + de novo draft assembly for human-sized genomes. The program is specially designed to + assemble Illumina short reads. It creates new opportunities for building reference + sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. + SOAPdenovo2 is the successor of SOAPdenovo.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = ['%(name)s-src-%(version)s.tgz'] + +patches = ['SOAPdenovo2-fix-unistd-includes.patch'] + +# parallel build is broken +maxparallel = 1 + +files_to_copy = [(['SOAPdenovo-127mer', 'SOAPdenovo-63mer'], 'bin')] + +sanity_check_paths = { + 'files': ['bin/SOAPdenovo-63mer', 'bin/SOAPdenovo-127mer'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.0.0-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.0.0-goolf-1.4.10.eb index f8b0fa21e01623fd57e4ce26f8b1ee5cb8695971..ab6bd52347d6edb3be4ed7f7600a344124f7b54c 100644 --- a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.0.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.0.0-goolf-1.4.10.eb @@ -33,4 +33,3 @@ sanity_check_paths = { } moduleclass = 'bio' - diff --git a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.1.0-goolf-1.4.10.eb index 59c84e5a287b01575ec5a9507e7fd99d5cf2cf06..5eb12170f691dabeff20d40076ee7ea346823cb8 100644 --- a/easybuild/easyconfigs/s/SPAdes/SPAdes-3.1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SPAdes/SPAdes-3.1.0-goolf-1.4.10.eb @@ -33,4 +33,3 @@ sanity_check_paths = { } moduleclass = 'bio' - diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.10.0-foss-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.10.0-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..c435d47a74ea04b3011d892f400f39138b4b3fc6 --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.10.0-foss-2015a.eb @@ -0,0 +1,40 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.10.0' + +homepage = 'http://www.sqlite.org/' +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['http://www.sqlite.org/2016/'] +version_minor_etc = version.split('.')[1:] +version_minor_etc += '0' * (3 - len(version_minor_etc)) +version_str = '%(version_major)s' + ''.join('%02d' % int(x) for x in version_minor_etc) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] + +dependencies = [ + ('libreadline', '6.3'), + ('Tcl', '8.6.4'), +] + +sanity_check_paths = { + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', + 'lib/libsqlite3.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GCC-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..62c6f7b8b27a83e63fc4c73b558fc63b36c5de9b --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-GCC-4.9.3-2.25.eb @@ -0,0 +1,40 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.8.10.2' + +homepage = 'http://www.sqlite.org/' +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} + +# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz +source_urls = ['http://www.sqlite.org/2015/'] +version_str = '%(version_major)s' + ''.join('%02d' % int(x) for x in version.split('.')[1:]) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] + +dependencies = [ + ('libreadline', '6.3', '', ('GCCcore', '4.9.3')), + ('Tcl', '8.6.4'), +] + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb index fbe46bacc9c1bd8179973683d6bd7b48e215c4a8..06b2583e36b4f279c498c9564c935d861d7b5af7 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015a.eb @@ -33,7 +33,7 @@ dependencies = [ parallel = 1 sanity_check_paths = { - 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.so'], + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015b.eb index f71908ec0b0b8f3a6185a4d4b332cdf2ee7b0241..5708afcd84c1c9eda0c27516d457c83ef1e45939 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-foss-2015b.eb @@ -33,7 +33,7 @@ dependencies = [ parallel = 1 sanity_check_paths = { - 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.so'], + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-gimkl-2.11.5.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-gimkl-2.11.5.eb index dae12b573444fc48e60b472480b619604cb5d887..11fc55a1b6d510f66f78708c9c73e8850fad82c8 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-gimkl-2.11.5.eb @@ -33,7 +33,7 @@ dependencies = [ parallel = 1 sanity_check_paths = { - 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.so'], + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.4.10.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.4.10.eb index 068704800490922c7b972112529c5358c9e4a43c..6a41f5863cdd704e90ae0196cf0c304428dfd172 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.4.10.eb @@ -33,7 +33,7 @@ dependencies = [ parallel = 1 sanity_check_paths = { - 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.so'], + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.7.20.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.7.20.eb index 3ad3a9145ad9ac47ec57addf0d9ce18a086021a5..e06537d494213332b5c58d0eb050d09e907573e3 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-goolf-1.7.20.eb @@ -33,7 +33,7 @@ dependencies = [ parallel = 1 sanity_check_paths = { - 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.so'], + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb index 03c9b50fbabb2dd183ad3118fd064f74afdd885f..17d369e53012d76db9298c6702f9b97044c1bfc1 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015a.eb @@ -33,7 +33,7 @@ dependencies = [ parallel = 1 sanity_check_paths = { - 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.so'], + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015b.eb index 2008f892f3bb68d29bcc0c52c7b8decd90fe4381..26439e2d65f89ff9cec5933ec668459b32f1d701 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.10.2-intel-2015b.eb @@ -33,7 +33,7 @@ dependencies = [ parallel = 1 sanity_check_paths = { - 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.so'], + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-ictce-5.5.0.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..ac855e7cba016f96354e6ee4dfd766b2c7842125 --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.8.6-ictce-5.5.0.eb @@ -0,0 +1,37 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.8.6' + +homepage = 'http://www.sqlite.org/' +description = "SQLite: SQL Database Engine in a C Library" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz +source_urls = ['http://www.sqlite.org/2014/'] +sources = ['sqlite-autoconf-%s0%s0%s00.tar.gz' % tuple(version.split('.'))] # very weird way to calculate your filename + +dependencies = [ + ('libreadline', '6.2'), + ('Tcl', '8.6.2'), +] + +sanity_check_paths = { + 'files': ['bin/sqlite3'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-foss-2016a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..47bee4f6240889b5a75b45f31a7488fb08df1232 --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-foss-2016a.eb @@ -0,0 +1,40 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.9.2' + +homepage = 'http://www.sqlite.org/' +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'foss', 'version': '2016a'} + +# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz +source_urls = ['http://www.sqlite.org/2015/'] +version_str = '%%(version_major)s%s00' % ''.join('%02d' % int(x) for x in version.split('.')[1:]) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] + +dependencies = [ + ('libreadline', '6.3'), + ('Tcl', '8.6.4'), +] + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2015b.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2015b.eb index 625f8fa8a1f7fd56ae03b38601e080749a67c1c2..79c1231084cf1cbade52b54a95b74f2b7e5d060e 100644 --- a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2015b.eb +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2015b.eb @@ -33,7 +33,7 @@ dependencies = [ parallel = 1 sanity_check_paths = { - 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.so'], + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], 'dirs': ['lib/pkgconfig'], } diff --git a/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016a.eb b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..a35ea6d2811fc95f83728004d08f164fc58865d5 --- /dev/null +++ b/easybuild/easyconfigs/s/SQLite/SQLite-3.9.2-intel-2016a.eb @@ -0,0 +1,40 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/ +## + +easyblock = 'ConfigureMake' + +name = 'SQLite' +version = '3.9.2' + +homepage = 'http://www.sqlite.org/' +description = 'SQLite: SQL Database Engine in a C Library' + +toolchain = {'name': 'intel', 'version': '2016a'} + +# eg. http://www.sqlite.org/2014/sqlite-autoconf-3080600.tar.gz +source_urls = ['http://www.sqlite.org/2015/'] +version_str = '%%(version_major)s%s00' % ''.join('%02d' % int(x) for x in version.split('.')[1:]) +sources = ['sqlite-autoconf-%s.tar.gz' % version_str] + +dependencies = [ + ('libreadline', '6.3'), + ('Tcl', '8.6.4'), +] + +parallel = 1 + +sanity_check_paths = { + 'files': ['bin/sqlite3', 'include/sqlite3ext.h', 'include/sqlite3.h', 'lib/libsqlite3.a', 'lib/libsqlite3.%s' % SHLIB_EXT], + 'dirs': ['lib/pkgconfig'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-i686.eb b/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-i686.eb index c965b7304ffcfbffbe6901bf7a68cc9efd3e9298..0e8750aa56a92bca49be6c674c2413e423a96a74 100644 --- a/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-i686.eb +++ b/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-i686.eb @@ -28,7 +28,7 @@ sanity_check_paths = { } # add the installation dir to PATH -modextrapaths = { +modextrapaths = { 'PATH': "", } diff --git a/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-x86_64.eb b/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-x86_64.eb index bb97c237d90c7d939e161fb9b7d896dc1bd1b90d..ea1f495c8a6b9f24ec2dcaf74d60f7ef3fb3c9f0 100644 --- a/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-x86_64.eb +++ b/easybuild/easyconfigs/s/SSAHA2/SSAHA2-2.5.5-x86_64.eb @@ -28,7 +28,7 @@ sanity_check_paths = { } # add the installation dir to PATH -modextrapaths = { +modextrapaths = { 'PATH': "", } diff --git a/easybuild/easyconfigs/s/STAR-Fusion/STAR-Fusion-0.6.0-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/s/STAR-Fusion/STAR-Fusion-0.6.0-goolf-1.4.10-Perl-5.16.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..58fcb58c2d997271b71012d66deeb987ae390a7e --- /dev/null +++ b/easybuild/easyconfigs/s/STAR-Fusion/STAR-Fusion-0.6.0-goolf-1.4.10-Perl-5.16.3.eb @@ -0,0 +1,52 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'Tarball' + +name = 'STAR-Fusion' +version = '0.6.0' +versionsuffix = '-Perl-%(perlver)s' + +homepage = 'https://github.com/STAR-Fusion/STAR-Fusion' +description = """STAR-Fusion uses the STAR aligner to identify candidate fusion transcripts + supported by Illumina reads. STAR-Fusion further processes the output generated by the STAR aligner + to map junction reads and spanning reads to a reference annotation set.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['https://github.com/STAR-Fusion/STAR-Fusion/releases/download/v%(version)s/'] +sources = ['%(name)s_v%(version)s.FULL.tar.gz'] + +dependencies = [ + ('Perl', '5.16.3'), + ('STAR', '2.5.1b'), +] + +# these are the perl libraries dependencies +exts_defaultclass = 'PerlModule' +exts_filter = ("perldoc -lm %(ext_name)s ", "") + +exts_list = [ + ('Set::IntervalTree', '0.10', { + 'source_tmpl': 'Set-IntervalTree-0.10.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BE/BENBOOTH/'], + }), + ('DB_File', '1.835', { + 'source_tmpl': 'DB_File-1.835.tar.gz', + 'source_urls': ['https://cpan.metacpan.org/authors/id/P/PM/PMQS/'], + }), +] + +modextrapaths = { + 'PATH': "", # add installation dir to PATH + 'PERL5LIB': 'lib/perl5/site_perl/%(perlver)s/' +} + +sanity_check_paths = { + 'files': ['STAR-Fusion'], + 'dirs': [] +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.3.0e-goolf-1.4.10.eb b/easybuild/easyconfigs/s/STAR/STAR-2.3.0e-goolf-1.4.10.eb index c428723fec1ce476f55b4e38b9936cec7f7566cc..c819f307db7716444808d574a550bc59d707377a 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.3.0e-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.3.0e-goolf-1.4.10.eb @@ -6,7 +6,7 @@ easyblock = 'MakeCp' name = 'STAR' -version = '2.3.0e' +version = '2.3.0e' homepage = 'https://code.google.com/p/rna-star/' description = """ STAR aligns RNA-seq reads to a reference genome using @@ -25,7 +25,7 @@ prebuildopts = 'rm STAR && ' parallel = 1 files_to_copy = [(["STAR"], "bin"), "README.txt"] - + sanity_check_paths = { 'files': ["bin/STAR"], 'dirs': [], diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-GNU-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..2a0e1ca5db44719858b5ea2f8df34f31dfd7da5b --- /dev/null +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-GNU-4.9.3-2.25.eb @@ -0,0 +1,32 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'MakeCp' + +name = 'STAR' +version = '2.5.0a' + +homepage = 'https://code.google.com/p/rna-star/' +description = """ STAR aligns RNA-seq reads to a reference genome using + uncompressed suffix arrays. """ + +toolchain = {'name': 'GNU', 'version': '4.9.3-2.25'} + +source_urls = ['https://github.com/alexdobin/STAR/archive/'] +sources = ['%(name)s_%(version)s.tar.gz'] + +# a binary is provided with the source files. We delete it +prebuildopts = 'rm -fr bin/ && ' + +parallel = 1 + +files_to_copy = [(["source/STAR"], "bin"), "CHANGES.md", "doc", "extras", "LICENSE", "README.md", "RELEASEnotes.md"] + +sanity_check_paths = { + 'files': ["bin/STAR"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-goolf-1.4.10.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-goolf-1.4.10.eb index 6a4e930918f99d68f0107d4aa8c21c87eeb4b3b5..ab46efb39c664961e1db9d749f3d076834ed1b6a 100644 --- a/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.0a-goolf-1.4.10.eb @@ -6,7 +6,7 @@ easyblock = 'MakeCp' name = 'STAR' -version = '2.5.0a' +version = '2.5.0a' homepage = 'https://code.google.com/p/rna-star/' description = """ STAR aligns RNA-seq reads to a reference genome using @@ -23,7 +23,7 @@ prebuildopts = 'rm -fr bin/ && ' parallel = 1 files_to_copy = [(["source/STAR"], "bin"), "CHANGES.md", "doc", "extras", "LICENSE", "README.md", "RELEASEnotes.md"] - + sanity_check_paths = { 'files': ["bin/STAR"], 'dirs': [], diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-foss-2015b.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-foss-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..8c14b0d9a69c352b99e03f406050c1a1109ed790 --- /dev/null +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-foss-2015b.eb @@ -0,0 +1,34 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics +# Author: Adam Huffman +# The Francis Crick Institute + +easyblock = 'MakeCp' + +name = 'STAR' +version = '2.5.1b' + +homepage = 'https://code.google.com/p/rna-star/' +description = """ STAR aligns RNA-seq reads to a reference genome using + uncompressed suffix arrays. """ + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = ['https://github.com/alexdobin/STAR/archive/'] +sources = ['%(version)s.tar.gz'] + +# a binary is provided with the source files. We delete it +prebuildopts = 'rm -fr bin/ && ' + +parallel = 1 + +files_to_copy = [(["source/STAR"], "bin"), "CHANGES.md", "doc", "extras", "LICENSE", "README.md", "RELEASEnotes.md"] + +sanity_check_paths = { + 'files': ["bin/STAR"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-goolf-1.4.10.eb b/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..35b1c5e236557cbea57fd160521a3b063394a55d --- /dev/null +++ b/easybuild/easyconfigs/s/STAR/STAR-2.5.1b-goolf-1.4.10.eb @@ -0,0 +1,32 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'MakeCp' + +name = 'STAR' +version = '2.5.1b' + +homepage = 'https://code.google.com/p/rna-star/' +description = """ STAR aligns RNA-seq reads to a reference genome using + uncompressed suffix arrays. """ + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['https://github.com/alexdobin/STAR/archive/'] +sources = ['%(version)s.tar.gz'] + +# a binary is provided with the source files. We delete it +prebuildopts = 'rm -fr bin/ && ' + +parallel = 1 + +files_to_copy = [(["source/STAR"], "bin"), "CHANGES.md", "doc", "extras", "LICENSE", "README.md", "RELEASEnotes.md"] + +sanity_check_paths = { + 'files': ["bin/STAR"], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/STREAM/STREAM-5.10-intel-2015a.eb b/easybuild/easyconfigs/s/STREAM/STREAM-5.10-intel-2015a.eb index ede241886da5e42eb7b568a4f8243254148ae0ac..79841574824ac44256ab1cc50406beface9a6f6a 100644 --- a/easybuild/easyconfigs/s/STREAM/STREAM-5.10-intel-2015a.eb +++ b/easybuild/easyconfigs/s/STREAM/STREAM-5.10-intel-2015a.eb @@ -17,7 +17,7 @@ checksums = ['dd2941e3a28ff90a79b571273c10aacf'] skipsteps = ['source'] # 10 million array elements (1000 runs): requires ~224MB of memory -cmds_str = "$CC $CFLAGS %(source)s -mcmodel=large -DSTREAM_ARRAY_SIZE=10000000 -DNTIMES=1000 -o stream_1Kx10M; " +cmds_str = "$CC $CFLAGS %(source)s -mcmodel=large -DSTREAM_ARRAY_SIZE=10000000 -DNTIMES=1000 -o stream_1Kx10M; " # 100 million array elements (1000 runs): requires ~2.2GiB of memory cmds_str += "$CC $CFLAGS %(source)s -mcmodel=large -DSTREAM_ARRAY_SIZE=100000000 -DNTIMES=1000 -o stream_1Kx100M; " # 1 billion array elements (1000 runs): requires ~22.4 GiB of memory diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-3.0.8-foss-2015a-Python-2.7.11.eb b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.8-foss-2015a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..9b8e4b5df8cc16cb2885b32b30d69f6aa3060be1 --- /dev/null +++ b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.8-foss-2015a-Python-2.7.11.eb @@ -0,0 +1,23 @@ +name = 'SWIG' +version = '3.0.8' + +homepage = 'http://www.swig.org/' +description = """SWIG is a software development tool that connects programs written in C and C++ with + a variety of high-level programming languages.""" + +toolchain = {'name': 'foss', 'version': '2015a'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pythonversion = '2.7.11' +versionsuffix = '-%s-%s' % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('PCRE', '8.37'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/SWIG/SWIG-3.0.8-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.8-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..0b3c5f42cf9e30391728151dd958bbcdc97f520e --- /dev/null +++ b/easybuild/easyconfigs/s/SWIG/SWIG-3.0.8-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,23 @@ +name = 'SWIG' +version = '3.0.8' + +homepage = 'http://www.swig.org/' +description = """SWIG is a software development tool that connects programs written in C and C++ with + a variety of high-level programming languages.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'pic': True, 'opt': True, 'optarch': True} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pythonversion = '2.7.11' +versionsuffix = '-%s-%s' % (python, pythonversion) + +dependencies = [ + (python, pythonversion), + ('PCRE', '8.37'), +] + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-goolf-1.4.10.eb index 55cd2babc089c069e03fc4f96deb375f872657b0..fb000c408e02a88af429476049a4bdca97c796b4 100644 --- a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-goolf-1.4.10.eb @@ -14,7 +14,7 @@ sources = ['Sablot-%(version)s.tar.gz'] dependencies = [('expat', '2.1.0')] sanity_check_paths = { - 'files': ['bin/sabcmd', 'bin/sablot-config', 'include/sablot.h', 'lib/libsablot.a', 'lib/libsablot.so'], + 'files': ['bin/sabcmd', 'bin/sablot-config', 'include/sablot.h', 'lib/libsablot.a', 'lib/libsablot.%s' % SHLIB_EXT], 'dirs': ['share/doc/html/sablot', 'man'], } diff --git a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-4.1.13.eb index db41cb46c7d16b4364771b72acaf210ab5cc81f1..c8667ed41e9b78c7ef7c29dcdbfc76f3df5c0bd6 100644 --- a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-4.1.13.eb @@ -16,7 +16,7 @@ patches = ['%(name)s-%(version)s_recent-icpc.patch'] dependencies = [('expat', '2.1.0')] sanity_check_paths = { - 'files': ['bin/sabcmd', 'bin/sablot-config', 'include/sablot.h', 'lib/libsablot.a', 'lib/libsablot.so'], + 'files': ['bin/sabcmd', 'bin/sablot-config', 'include/sablot.h', 'lib/libsablot.a', 'lib/libsablot.%s' % SHLIB_EXT], 'dirs': ['share/doc/html/sablot', 'man'], } diff --git a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-5.3.0.eb index 3b78da50c78dbf76d5f51269b422a17ab61073a1..7516655a5bd324df6ce511ab09534620f0b42623 100644 --- a/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Sablotron/Sablotron-1.0.3-ictce-5.3.0.eb @@ -16,7 +16,7 @@ patches = ['%(name)s-%(version)s_recent-icpc.patch'] dependencies = [('expat', '2.1.0')] sanity_check_paths = { - 'files': ['bin/sabcmd', 'bin/sablot-config', 'include/sablot.h', 'lib/libsablot.a', 'lib/libsablot.so'], + 'files': ['bin/sabcmd', 'bin/sablot-config', 'include/sablot.h', 'lib/libsablot.a', 'lib/libsablot.%s' % SHLIB_EXT], 'dirs': ['share/doc/html/sablot', 'man'], } diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-1.8.0-gompi-1.1.0-no-OFED-ATLAS-3.8.4-LAPACK-3.4.0-BLACS-1.1.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-1.8.0-gompi-1.1.0-no-OFED-ATLAS-3.8.4-LAPACK-3.4.0-BLACS-1.1.eb index 210286f19db809377ab1291cf6c930e7d2ae266f..6c10e15771375503e4184dd6d8fb7cca44b4350c 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-1.8.0-gompi-1.1.0-no-OFED-ATLAS-3.8.4-LAPACK-3.4.0-BLACS-1.1.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-1.8.0-gompi-1.1.0-no-OFED-ATLAS-3.8.4-LAPACK-3.4.0-BLACS-1.1.eb @@ -31,7 +31,7 @@ dependencies = [ (blacslib, blacsver) ] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-1.8.0-iiqmpi-3.3.0-ACML-5.3.0-ifort-64bit-BLACS-1.1.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-1.8.0-iiqmpi-3.3.0-ACML-5.3.0-ifort-64bit-BLACS-1.1.eb index adc08604576685e7874cfae6f1f9e530c2320d70..fc37a0988b99e90383149d2f4edcb441753d48ed 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-1.8.0-iiqmpi-3.3.0-ACML-5.3.0-ifort-64bit-BLACS-1.1.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-1.8.0-iiqmpi-3.3.0-ACML-5.3.0-ifort-64bit-BLACS-1.1.eb @@ -21,7 +21,7 @@ blacsn = 'BLACS' blacsv = '1.1' blacs = "-%s-%s" % (blacsn, blacsv) -versionsuffix = "%s%s"% (acml, blacs) +versionsuffix = "%s%s" % (acml, blacs) # both icc and ifort are needed, but ifort is not part of icc 'toolkit' dependencies = [ diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.1-gompi-1.1.0-no-OFED-ATLAS-3.8.4-LAPACK-3.4.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.1-gompi-1.1.0-no-OFED-ATLAS-3.8.4-LAPACK-3.4.0.eb index 269cb64669464104bdf417d6a7dd39aca3414117..f837989fc46308d3b649386f52b708a01fc549b2 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.1-gompi-1.1.0-no-OFED-ATLAS-3.8.4-LAPACK-3.4.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.1-gompi-1.1.0-no-OFED-ATLAS-3.8.4-LAPACK-3.4.0.eb @@ -26,7 +26,7 @@ dependencies = [ (lapacklib, lapackver) ] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-cgmpich-1.1.6-OpenBLAS-0.2.6-LAPACK-3.4.2.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-cgmpich-1.1.6-OpenBLAS-0.2.6-LAPACK-3.4.2.eb index 904f9125acf070f723adbbda9438a0a02f892279..ac50d0ef91e1d20c2aca198100dc1f750022e5f7 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-cgmpich-1.1.6-OpenBLAS-0.2.6-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-cgmpich-1.1.6-OpenBLAS-0.2.6-LAPACK-3.4.2.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff)] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-cgmvapich2-1.1.12rc1-OpenBLAS-0.2.6-LAPACK-3.4.2.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-cgmvapich2-1.1.12rc1-OpenBLAS-0.2.6-LAPACK-3.4.2.eb index df6546768d28176aadb22c00cd5b7a4809171320..4f7213c206e1b3fe10070521271f27ab9e1372fb 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-cgmvapich2-1.1.12rc1-OpenBLAS-0.2.6-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-cgmvapich2-1.1.12rc1-OpenBLAS-0.2.6-LAPACK-3.4.2.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff)] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-cgompi-1.1.7-OpenBLAS-0.2.6-LAPACK-3.4.2.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-cgompi-1.1.7-OpenBLAS-0.2.6-LAPACK-3.4.2.eb index d0e28920491631b6aab0336b3f0c1b63eacdb9c5..abdf8ee53892e9a955b7f97ee172eaade9094236 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-cgompi-1.1.7-OpenBLAS-0.2.6-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-cgompi-1.1.7-OpenBLAS-0.2.6-LAPACK-3.4.2.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff)] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmpich-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmpich-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb index 532548937666f377ddd0b56838ee0aea21acd732..18d673bc52fc5de4532134c43e5a6297de370b98 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmpich-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmpich-1.4.8-OpenBLAS-0.2.6-LAPACK-3.4.2.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff)] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.12-OpenBLAS-0.2.6-LAPACK-3.4.2.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.12-OpenBLAS-0.2.6-LAPACK-3.4.2.eb index 9f4ac4da774624a89460d74a48ce13e2e41d276c..7b0e530a27df823cef82219a9cc3c84140983102 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.12-OpenBLAS-0.2.6-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.12-OpenBLAS-0.2.6-LAPACK-3.4.2.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff)] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.12rc1-OpenBLAS-0.2.6-LAPACK-3.4.2.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.12rc1-OpenBLAS-0.2.6-LAPACK-3.4.2.eb index 4e2c7a11615538272f092ec26aa44466a48b0634..fbd7ceb3422a66fb8dde30ebd4c237b7736a4a8d 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.12rc1-OpenBLAS-0.2.6-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.12rc1-OpenBLAS-0.2.6-LAPACK-3.4.2.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff)] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb index 4792a692ea6ef2b1e54ee7ef90fce78abc9cb5c8..cae50d0f3e48648b8d2ae6013dfaef1a25a5c033 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff, ('GCC', '4.8.4'))] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.9a2-ACML-5.2.0-gfortran-64bit.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.9a2-ACML-5.2.0-gfortran-64bit.eb index b8ff206dfbae2ce0c6a8680a1785dbf67761f143..2756603966a51409e79e606506c8828021b212fa 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.9a2-ACML-5.2.0-gfortran-64bit.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gmvapich2-1.7.9a2-ACML-5.2.0-gfortran-64bit.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blas_lapack_lib, blas_lapack_ver, blas_lapack_suff dependencies = [(blas_lapack_lib, blas_lapack_ver, blas_lapack_suff, True)] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.3.12-OpenBLAS-0.2.6-LAPACK-3.4.2.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.3.12-OpenBLAS-0.2.6-LAPACK-3.4.2.eb index 04f36f4b91043a273458db989e81da07eb55037c..a669a672e136f4ed398df119a2df03d7211532de 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.3.12-OpenBLAS-0.2.6-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.3.12-OpenBLAS-0.2.6-LAPACK-3.4.2.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff)] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2.eb index 8f7ad295d1679bb629c2c6814132c9e2ebd9056f..0cb313ec9d1fa730a26cc21283c43e9203d16882 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff)] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.4.10-no-OFED-OpenBLAS-0.2.6-LAPACK-3.4.2.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.4.10-no-OFED-OpenBLAS-0.2.6-LAPACK-3.4.2.eb index 5e0e14ba2c64e7905766ad2233ffcb166e204df3..a9d14c30102921ab382811d2121a45ac100d24f2 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.4.10-no-OFED-OpenBLAS-0.2.6-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.4.10-no-OFED-OpenBLAS-0.2.6-LAPACK-3.4.2.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff)] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.12-ATLAS-3.10.1-LAPACK-3.4.2.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.12-ATLAS-3.10.1-LAPACK-3.4.2.eb index 7e8bf14eee4c7025dbd1ad0fafa848d4ddcc4889..d9714deb739fcf749b394d0b2fa747ede16cb90d 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.12-ATLAS-3.10.1-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.12-ATLAS-3.10.1-LAPACK-3.4.2.eb @@ -26,7 +26,7 @@ dependencies = [ (lapacklib, lapackver), ] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.12-no-OFED-ATLAS-3.10.1-LAPACK-3.4.2.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.12-no-OFED-ATLAS-3.10.1-LAPACK-3.4.2.eb index 68e8936860fc692c3ac8a77a87557a7338380e46..cdbebf7d1b7d3cf961bb003272ba83231d2c466b 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.12-no-OFED-ATLAS-3.10.1-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.12-no-OFED-ATLAS-3.10.1-LAPACK-3.4.2.eb @@ -26,7 +26,7 @@ dependencies = [ (lapacklib, lapackver), ] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.14-OpenBLAS-0.2.8-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.14-OpenBLAS-0.2.8-LAPACK-3.5.0.eb index 2a0a7e12ce3769e1fd5da5567a2782fc070cce8e..17094c0c6f6683dcc303f60776018adc312c57c2 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.14-OpenBLAS-0.2.8-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.14-OpenBLAS-0.2.8-LAPACK-3.5.0.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff)] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.14-no-OFED-OpenBLAS-0.2.8-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.14-no-OFED-OpenBLAS-0.2.8-LAPACK-3.5.0.eb index b55976ccac840121dba0eb27ab881fd3d738a37d..7815082cf245cab1370a02c78eb9dfdbd37d35ed 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.14-no-OFED-OpenBLAS-0.2.8-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.14-no-OFED-OpenBLAS-0.2.8-LAPACK-3.5.0.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff)] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0.eb index a52473e7ffedd519f37acacfd370df8c95defd6c..a53493b9f7309b6ff769e1268b0dc2f26878c3d7 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.5.16-OpenBLAS-0.2.13-LAPACK-3.5.0.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff)] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.6.10-OpenBLAS-0.2.8-LAPACK-3.4.2.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.6.10-OpenBLAS-0.2.8-LAPACK-3.4.2.eb index b037ae507c78abd134539b40553afd2e5ff33e04..98a3aca262d6fac037bf03886e5537db6097c441 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.6.10-OpenBLAS-0.2.8-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.6.10-OpenBLAS-0.2.8-LAPACK-3.4.2.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff)] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb index 94cfcc38e51b361f6e73e87483987d5ca769c20a..4f12059c031a8440d017989dace07b2b110cfead 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff, ('GCC', '4.8.4'))] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0.eb index 134eb47e4de2da9b02c4aa66da3eea2caa648f9b..f560b92bf9ccb9390ecbcddce68e64c9a0647571 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2014b-OpenBLAS-0.2.9-LAPACK-3.5.0.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff, ('GCC', '4.8.3'))] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.05-OpenBLAS-0.2.14-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.05-OpenBLAS-0.2.14-LAPACK-3.5.0.eb index e8390ed236603791e0d1281349dae16f551179a6..f65260e697d06dd856a9963864871de1677538c7 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.05-OpenBLAS-0.2.14-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015.05-OpenBLAS-0.2.14-LAPACK-3.5.0.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff, ('GNU', '4.9.2-2.25'))] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb index be40d5d1ed370827e04b76ef3e75e42ec0b4e6bc..ed214b72f237f7c071083bcd36569960d7e56a04 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015a-OpenBLAS-0.2.13-LAPACK-3.5.0.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff, ('GCC', '4.9.2'))] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015b-OpenBLAS-0.2.14-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015b-OpenBLAS-0.2.14-LAPACK-3.5.0.eb index 758c146b8325e485f7ccda335760156c4ac8d0ca..e17684d2a5522c307cbce1a02503c4165c630ef7 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015b-OpenBLAS-0.2.14-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2015b-OpenBLAS-0.2.14-LAPACK-3.5.0.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff, ('GNU', '4.9.3-2.25'))] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..00ff5f97ba50ec32b1f31ff6411991d3877ed351 --- /dev/null +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0.eb @@ -0,0 +1,25 @@ +name = 'ScaLAPACK' +version = '2.0.2' + +homepage = 'http://www.netlib.org/scalapack/' +description = """The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines + redesigned for distributed memory MIMD parallel computers.""" + +toolchain = {'name': 'gompi', 'version': '2016a'} +toolchainopts = {'pic': True} + +source_urls = [homepage] +sources = [SOURCELOWER_TGZ] + +blaslib = 'OpenBLAS' +blasver = '0.2.15' +blassuff = '-LAPACK-3.6.0' + +versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) + +dependencies = [(blaslib, blasver, blassuff, ('GCC', '4.9.3-2.25'))] + +# parallel build tends to fail, so disabling it +parallel = 1 + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompic-2.6.10-OpenBLAS-0.2.8-LAPACK-3.4.2.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompic-2.6.10-OpenBLAS-0.2.8-LAPACK-3.4.2.eb index 77f58e7b27ba1805f0a058652d511b885fa5b2d7..fdc1dfd842e71a2043e8e5ce6b490ac4156bf374 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompic-2.6.10-OpenBLAS-0.2.8-LAPACK-3.4.2.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gompic-2.6.10-OpenBLAS-0.2.8-LAPACK-3.4.2.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff)] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gpsmpi-2014.12-OpenBLAS-0.2.12-LAPACK-3.5.0.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gpsmpi-2014.12-OpenBLAS-0.2.12-LAPACK-3.5.0.eb index ac55389f2d4c1d8e47cd5b7e52f918b0fe035bd5..292ec23d395127d2d3a0e85f20639cf1d2bca918 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gpsmpi-2014.12-OpenBLAS-0.2.12-LAPACK-3.5.0.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-gpsmpi-2014.12-OpenBLAS-0.2.12-LAPACK-3.5.0.eb @@ -23,8 +23,7 @@ versionsuffix = "-%s-%s%s" % (blaslib, blasver, blassuff) dependencies = [(blaslib, blasver, blassuff, comp)] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'numlib' - diff --git a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-iiqmpi-4.4.13-ACML-5.3.1-ifort-64bit.eb b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-iiqmpi-4.4.13-ACML-5.3.1-ifort-64bit.eb index 325514fe67e763bbdf4e62eae0a96f01cb9f54e0..243f17e8c73969c5e29db032a7a4dd554fb5b076 100644 --- a/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-iiqmpi-4.4.13-ACML-5.3.1-ifort-64bit.eb +++ b/easybuild/easyconfigs/s/ScaLAPACK/ScaLAPACK-2.0.2-iiqmpi-4.4.13-ACML-5.3.1-ifort-64bit.eb @@ -19,7 +19,7 @@ versionsuffix = "-%s-%s%s" % (blas_lapack_lib, blas_lapack_ver, blas_lapack_suff dependencies = [(blas_lapack_lib, blas_lapack_ver, blas_lapack_suff, True)] -## parallel build tends to fail, so disabling it +# parallel build tends to fail, so disabling it parallel = 1 moduleclass = 'lib' diff --git a/easybuild/easyconfigs/s/Scalasca/Scalasca-1.4.3-gompi-1.4.12-no-OFED.eb b/easybuild/easyconfigs/s/Scalasca/Scalasca-1.4.3-gompi-1.4.12-no-OFED.eb index aad8b175e4923a73577043a19fd98dee35ab5836..26b61def41ea708e3bc67eaa99ee54c56c18f737 100644 --- a/easybuild/easyconfigs/s/Scalasca/Scalasca-1.4.3-gompi-1.4.12-no-OFED.eb +++ b/easybuild/easyconfigs/s/Scalasca/Scalasca-1.4.3-gompi-1.4.12-no-OFED.eb @@ -27,8 +27,8 @@ dependencies = [ ('OPARI2', '1.0.7'), ('PAPI', '5.2.0'), ('PDT', '3.19'), -# Scalasca cannot handle name changes yet introduced with OTF-1.12.3 -# ('OTF', '1.12.4'), + # Scalasca cannot handle name changes yet introduced with OTF-1.12.3 + # ('OTF', '1.12.4'), ] # http://apps.fz-juelich.de/scalasca/releases/scalasca/1.4/dist/scalasca-1.4.3.tar.gz diff --git a/easybuild/easyconfigs/s/ScientificPython/ScientificPython-2.9.4-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/s/ScientificPython/ScientificPython-2.9.4-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..47671f1164cf4fd0e29bc09208daaddca11b5766 --- /dev/null +++ b/easybuild/easyconfigs/s/ScientificPython/ScientificPython-2.9.4-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,35 @@ +easyblock = 'PythonPackage' + +name = 'ScientificPython' +version = '2.9.4' + +homepage = 'https://sourcesup.cru.fr/projects/scientific-py/' +description = """ScientificPython is a collection of Python modules for scientific computing. + It contains support for geometry, mathematical functions, statistics, physical units, IO, visualization, + and parallelization.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['https://sourcesup.renater.fr/frs/download.php/4570'] +sources = [SOURCE_TAR_GZ] + +pyver = '2.7.11' +pyshortver = '.'.join(pyver.split('.')[:2]) + +versionsuffix = '-Python-%s' % pyver + +dependencies = [ + ('Python', pyver), + # older version of numpy than the one included in Python module required + # cfr. https://bitbucket.org/khinsen/scientificpython/issue/13/numpy-19-has-dropped-support-for + ('numpy', '1.8.2', versionsuffix), +] + +options = {'modulename': 'Scientific'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages/Scientific' % pyshortver], +} + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/Serf/Serf-1.3.8-foss-2015a.eb b/easybuild/easyconfigs/s/Serf/Serf-1.3.8-foss-2015a.eb index febe7d2fb6a453a218f5acec10a906e702034006..987ce669c8446b7fca760ad28a2504ca37664ebc 100644 --- a/easybuild/easyconfigs/s/Serf/Serf-1.3.8-foss-2015a.eb +++ b/easybuild/easyconfigs/s/Serf/Serf-1.3.8-foss-2015a.eb @@ -21,8 +21,8 @@ builddependencies = [('SCons', '2.3.6', '-Python-2.7.9')] dependencies = [ ('APR', '1.5.2'), ('APR-util', '1.5.4'), -# ('OpenSSL', '1.0.1p'), # OS dependency should be preferred if the os version is more recent then this version, it's -# nice to have an up to date openssl for security reasons + # ('OpenSSL', '1.0.1p'), # OS dependency should be preferred if the os version is more recent then this version, it's + # nice to have an up to date openssl for security reasons ] osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] @@ -30,7 +30,7 @@ osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] buildopts = "APR=$EBROOTAPR/bin/apr-1-config APU=$EBROOTAPRMINUTIL/bin/apu-1-config" sanity_check_paths = { - 'files': ['include/serf-1/serf.h'] + + 'files': ['include/serf-1/serf.h'] + ['lib/libserf-1.%s' % x for x in ['a', 'so']], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Shapely/Shapely-1.2.15-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/s/Shapely/Shapely-1.2.15-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 87deeb47fed2b3fe1bf3be70db4e0bc217315531..5221d932735203eecf807b77ae2cc415fdaa589e 100644 --- a/easybuild/easyconfigs/s/Shapely/Shapely-1.2.15-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/Shapely/Shapely-1.2.15-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -19,14 +19,14 @@ pythonshortversion = ".".join(pythonversion.split(".")[:-1]) versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('setuptools', '0.6c11', versionsuffix), - ('GEOS', '3.3.5'), - ] + (python, pythonversion), + ('setuptools', '0.6c11', versionsuffix), + ('GEOS', '3.3.5'), +] sanity_check_paths = { - 'files': ['lib/python%s/site-packages/site.py' % (pythonshortversion)], - 'dirs': [] - } + 'files': ['lib/python%s/site-packages/site.py' % (pythonshortversion)], + 'dirs': [] +} moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/Shapely/Shapely-1.2.15-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/s/Shapely/Shapely-1.2.15-goolf-1.4.10-Python-2.7.3.eb index 758a4009e5d02bbd4902447a9a92dc7c420e77ce..2aecbeae80ac26d4af4ec0312bcfaf0fda3043fc 100644 --- a/easybuild/easyconfigs/s/Shapely/Shapely-1.2.15-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/Shapely/Shapely-1.2.15-goolf-1.4.10-Python-2.7.3.eb @@ -19,14 +19,14 @@ pythonshortversion = ".".join(pythonversion.split(".")[:-1]) versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('setuptools', '0.6c11', versionsuffix), - ('GEOS', '3.3.5'), - ] + (python, pythonversion), + ('setuptools', '0.6c11', versionsuffix), + ('GEOS', '3.3.5'), +] sanity_check_paths = { - 'files': ['lib/python%s/site-packages/site.py' % (pythonshortversion)], - 'dirs': [] - } + 'files': ['lib/python%s/site-packages/site.py' % (pythonshortversion)], + 'dirs': [] +} moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/Shapely/Shapely-1.2.15-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/s/Shapely/Shapely-1.2.15-ictce-4.0.6-Python-2.7.3.eb index b6ecffc690148d3e5e05c6e12f20f22ceaff04d0..ad94a62e1cdb6a479281ac6aab6b3c63b37abfc7 100644 --- a/easybuild/easyconfigs/s/Shapely/Shapely-1.2.15-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/Shapely/Shapely-1.2.15-ictce-4.0.6-Python-2.7.3.eb @@ -19,14 +19,14 @@ pythonshortversion = ".".join(pythonversion.split(".")[:-1]) versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('setuptools', '0.6c11', versionsuffix), - ('GEOS', '3.3.5'), - ] + (python, pythonversion), + ('setuptools', '0.6c11', versionsuffix), + ('GEOS', '3.3.5'), +] sanity_check_paths = { - 'files': ['lib/python%s/site-packages/site.py' % (pythonshortversion)], - 'dirs': [] - } + 'files': ['lib/python%s/site-packages/site.py' % (pythonshortversion)], + 'dirs': [] +} moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/Shapely/Shapely-1.2.15-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/s/Shapely/Shapely-1.2.15-ictce-5.3.0-Python-2.7.3.eb index 8727c7a7cbf7d0a1e15448505bbf3c3bb9912abb..1b6cb746c176b5adeb41f17f5d20ef96d877d07c 100644 --- a/easybuild/easyconfigs/s/Shapely/Shapely-1.2.15-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/Shapely/Shapely-1.2.15-ictce-5.3.0-Python-2.7.3.eb @@ -19,14 +19,14 @@ pythonshortversion = ".".join(pythonversion.split(".")[:-1]) versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('setuptools', '0.6c11', versionsuffix), - ('GEOS', '3.3.5'), - ] + (python, pythonversion), + ('setuptools', '0.6c11', versionsuffix), + ('GEOS', '3.3.5'), +] sanity_check_paths = { - 'files': ['lib/python%s/site-packages/site.py' % (pythonshortversion)], - 'dirs': [] - } + 'files': ['lib/python%s/site-packages/site.py' % (pythonshortversion)], + 'dirs': [] +} moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/Silo/Silo-4.9.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Silo/Silo-4.9.1-goolf-1.4.10.eb index 7bc12da16d1cef8cd15932ea0d84003fde059d07..e71c024ff424262b62b18af7e47d69966ea1f178 100644 --- a/easybuild/easyconfigs/s/Silo/Silo-4.9.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Silo/Silo-4.9.1-goolf-1.4.10.eb @@ -4,7 +4,7 @@ name = 'Silo' version = '4.9.1' homepage = 'https://wci.llnl.gov/codes/silo/' -description = """Silo is a library for reading and writing a wide variety of scientific data to binary, disk files""" +description = """Silo is a library for reading and writing a wide variety of scientific data to binary, disk files""" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'opt': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/s/Silo/Silo-4.9.1-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Silo/Silo-4.9.1-ictce-5.3.0.eb index 84c2cd61ba8095b9374ef61b7b247c547695a81d..e4c2903f0e3d73b4fb0db1099ea5877069f38b64 100644 --- a/easybuild/easyconfigs/s/Silo/Silo-4.9.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Silo/Silo-4.9.1-ictce-5.3.0.eb @@ -4,7 +4,7 @@ name = 'Silo' version = '4.9.1' homepage = 'https://wci.llnl.gov/codes/silo/' -description = """Silo is a library for reading and writing a wide variety of scientific data to binary, disk files""" +description = """Silo is a library for reading and writing a wide variety of scientific data to binary, disk files""" toolchain = {'name': 'ictce', 'version': '5.3.0'} toolchainopts = {'opt': True, 'pic': True, 'usempi': True} diff --git a/easybuild/easyconfigs/s/Spark/Spark-1.6.0.eb b/easybuild/easyconfigs/s/Spark/Spark-1.6.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..276eb5f0cf8f4777bc6fdde336a8d191d98160d0 --- /dev/null +++ b/easybuild/easyconfigs/s/Spark/Spark-1.6.0.eb @@ -0,0 +1,27 @@ +easyblock = 'Tarball' + +name = 'Spark' +version = '1.6.0' + +homepage = 'http://spark.apache.org' +description = """Spark is Hadoop MapReduce done in memory""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['%(namelower)s-%(version)s-bin-hadoop2.6.tgz'] +source_urls = [ + 'http://apache.belnet.be/%(namelower)s/%(namelower)s-%(version)s/', + 'http://www.eu.apache.org/dist/%(namelower)s/%(namelower)s-%(version)s/', + 'http://www.us.apache.org/dist/%(namelower)s/%(namelower)s-%(version)s/', +] + +dependencies = [('Java', '1.7.0_80')] + +sanity_check_paths = { + 'files': ['bin/spark-shell'], + 'dirs': ['lib', 'python'] +} + +modextrapaths = {'PYTHONPATH': 'python'} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/Sphinx/Sphinx-1.1.3-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/s/Sphinx/Sphinx-1.1.3-goalf-1.1.0-no-OFED-Python-2.7.3.eb index b9a94e2e9e79af56c34ebfb76c3b0d7603f87000..520c4a6f15df334a19eec331529dc4a8db8acf70 100644 --- a/easybuild/easyconfigs/s/Sphinx/Sphinx-1.1.3-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/Sphinx/Sphinx-1.1.3-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -27,8 +27,8 @@ dependencies = [(python, pyver), runtest = "make test" sanity_check_paths = { - 'files': ["bin/sphinx-%s" % x for x in ["apidoc", "autogen", "build", "quickstart"]], - 'dirs': ["lib/python%s/site-packages/%s-%s-py%s.egg" % (pyshortver, name, version, pyshortver)] - } + 'files': ["bin/sphinx-%s" % x for x in ["apidoc", "autogen", "build", "quickstart"]], + 'dirs': ["lib/python%s/site-packages/%s-%s-py%s.egg" % (pyshortver, name, version, pyshortver)] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/s/Sphinx/Sphinx-1.1.3-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/s/Sphinx/Sphinx-1.1.3-goolf-1.4.10-Python-2.7.3.eb index 61173fdddde70d4d350f991f4646a2ac2a4db38a..d7ce90b55721c9d55a5b312ad6956dce851029bd 100644 --- a/easybuild/easyconfigs/s/Sphinx/Sphinx-1.1.3-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/Sphinx/Sphinx-1.1.3-goolf-1.4.10-Python-2.7.3.eb @@ -27,8 +27,8 @@ dependencies = [(python, pyver), runtest = "make test" sanity_check_paths = { - 'files': ["bin/sphinx-%s" % x for x in ["apidoc", "autogen", "build", "quickstart"]], - 'dirs': ["lib/python%s/site-packages/%s-%s-py%s.egg" % (pyshortver, name, version, pyshortver)] - } + 'files': ["bin/sphinx-%s" % x for x in ["apidoc", "autogen", "build", "quickstart"]], + 'dirs': ["lib/python%s/site-packages/%s-%s-py%s.egg" % (pyshortver, name, version, pyshortver)] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/s/Sphinx/Sphinx-1.1.3-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/s/Sphinx/Sphinx-1.1.3-ictce-4.0.6-Python-2.7.3.eb index 069dffe6d0cea4bc996efee769e56a6bf52f0afe..9807eeeeb21a1a4d1ea3b2f62d7fbf76621727cf 100644 --- a/easybuild/easyconfigs/s/Sphinx/Sphinx-1.1.3-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/Sphinx/Sphinx-1.1.3-ictce-4.0.6-Python-2.7.3.eb @@ -27,8 +27,8 @@ dependencies = [(python, pyver), runtest = "make test" sanity_check_paths = { - 'files': ["bin/sphinx-%s" % x for x in ["apidoc", "autogen", "build", "quickstart"]], - 'dirs': ["lib/python%s/site-packages/%s-%s-py%s.egg" % (pyshortver, name, version, pyshortver)] - } + 'files': ["bin/sphinx-%s" % x for x in ["apidoc", "autogen", "build", "quickstart"]], + 'dirs': ["lib/python%s/site-packages/%s-%s-py%s.egg" % (pyshortver, name, version, pyshortver)] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/s/Sphinx/Sphinx-1.1.3-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/s/Sphinx/Sphinx-1.1.3-ictce-5.3.0-Python-2.7.3.eb index 300df5535fc2dccccc367f8232d14c101a239319..79877de835fbfeb2f7ad715dfdf8dbf3c70feb08 100644 --- a/easybuild/easyconfigs/s/Sphinx/Sphinx-1.1.3-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/Sphinx/Sphinx-1.1.3-ictce-5.3.0-Python-2.7.3.eb @@ -27,8 +27,8 @@ dependencies = [(python, pyver), runtest = "make test" sanity_check_paths = { - 'files': ["bin/sphinx-%s" % x for x in ["apidoc", "autogen", "build", "quickstart"]], - 'dirs': ["lib/python%s/site-packages/%s-%s-py%s.egg" % (pyshortver, name, version, pyshortver)] - } + 'files': ["bin/sphinx-%s" % x for x in ["apidoc", "autogen", "build", "quickstart"]], + 'dirs': ["lib/python%s/site-packages/%s-%s-py%s.egg" % (pyshortver, name, version, pyshortver)] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/s/Sphinx/Sphinx-1.3.3-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/s/Sphinx/Sphinx-1.3.3-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..3813e03737da16b580757c521935f2a0be5dfcbf --- /dev/null +++ b/easybuild/easyconfigs/s/Sphinx/Sphinx-1.3.3-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,71 @@ +easyblock = 'Bundle' + +name = 'Sphinx' +version = '1.3.3' + +homepage = 'http://sphinx.pocoo.org/' +description = """Sphinx is a tool that makes it easy to create intelligent and beautiful documentation. + It was originally created for the new Python documentation, and it has excellent facilities for the + documentation of Python projects, but C/C++ is already supported as well, and it is planned to add + special support for other languages as well.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +# this is a bundle of Python packages +exts_defaultclass = 'PythonPackage' +exts_filter = ('python -c "import %(ext_name)s"', '') + +pyver = '2.7.11' +pyshortver = '.'.join(pyver.split('.')[0:2]) +versionsuffix = '-Python-%s' % pyver + +dependencies = [ + ('Python', pyver), +] + +exts_list = [ + ('Docutils', '0.12', { + 'source_tmpl': 'docutils-%(version)s.tar.gz', + 'source_urls': [('http://sourceforge.net/projects/docutils/files/docutils/%(version)s/', 'download')], + }), + ('Jinja2', '2.8', { + 'source_urls': ['https://pypi.python.org/packages/source/J/Jinja2/'], + }), + ('Pygments', '2.0.2', { + 'source_urls': ['https://pypi.python.org/packages/source/P/Pygments'], + }), + ('snowballstemmer', '1.2.1', { + 'source_urls': ['https://pypi.python.org/packages/source/s/snowballstemmer/'], + }), + ('Babel', '2.2.0', { + 'source_urls': ['https://pypi.python.org/packages/source/B/Babel/'], + }), + ('alabaster', '0.7.7', { + 'source_urls': ['https://pypi.python.org/packages/source/a/alabaster/'], + }), + (name, version, { + 'source_urls': ['https://pypi.python.org/packages/source/S/Sphinx/'], + }), + # sphinx_rtd_theme depends on Sphinx, and should be there to make the tests work + ('sphinx_rtd_theme', '0.1.9', { + 'source_urls': ['https://pypi.python.org/packages/source/s/sphinx_rtd_theme/'], + }), +] + +# Sphinx unit tests *after* installing extensions +postinstallcmds = [' && '.join([ + "cd %(builddir)s/%(name)s/%(name)s-%(version)s/", + "PYTHONPATH=%%(installdir)s/lib/python%s/site-packages/:$PYTHONPATH make test" % pyshortver, +])] + +# specify that Bundle easyblock should run a full sanity check, rather than just trying to load the module +full_sanity_check = True + +sanity_check_paths = { + 'files': ['bin/sphinx-%s' % x for x in ['apidoc', 'autogen', 'build', 'quickstart']], + 'dirs': ['lib/python%s/site-packages' % pyshortver], +} + +modextrapaths = {'PYTHONPATH': ['lib/python%s/site-packages' % pyshortver]} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/s/Stampy/Stampy-1.0.28-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/s/Stampy/Stampy-1.0.28-intel-2015b-Python-2.7.10.eb index 54957600564781c6524af507a2ce0d66bada000b..04304ec6c24c29b04092b33c7cab98c6092337df 100644 --- a/easybuild/easyconfigs/s/Stampy/Stampy-1.0.28-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/s/Stampy/Stampy-1.0.28-intel-2015b-Python-2.7.10.eb @@ -22,10 +22,10 @@ dependencies = [ ('Python', pyver), ] -files_to_copy = ['ext', 'maptools.so', 'plugins', 'README.txt', 'Stampy', 'stampy.py'] +files_to_copy = ['ext', 'maptools.%s' % SHLIB_EXT, 'plugins', 'README.txt', 'Stampy', 'stampy.py'] sanity_check_paths = { - 'files': ['maptools.so', 'stampy.py'], + 'files': ['maptools.%s' % SHLIB_EXT, 'stampy.py'], 'dirs': ['ext', 'plugins', 'Stampy'], } diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb index 08108a8a47e1d6403f76b9ef0ef8fbc718b68e66..0d2c3773f892039150121b4e10824318b0da8ef2 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goalf-1.1.0-no-OFED.eb @@ -24,8 +24,8 @@ source_urls = [GNU_SOURCE] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sanity_check_paths = { - 'files': ['bin/stow'], - 'dirs': [] - } + 'files': ['bin/stow'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb index bff8348243c9cefbc2d15b4aa148d6eb6fd80ff3..df639eb5dc896a990d7a1bf95fc5f07f3c647023 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-goolf-1.4.10.eb @@ -24,8 +24,8 @@ source_urls = [GNU_SOURCE] toolchain = {'name': 'goolf', 'version': '1.4.10'} sanity_check_paths = { - 'files': ['bin/stow'], - 'dirs': [] - } + 'files': ['bin/stow'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb index 3dacc81151b0e9d0387e558b0d0c2a0b642fe0f3..e7734dc52655a9639d12aa71be2814770bb9be7b 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-4.0.6.eb @@ -24,8 +24,8 @@ source_urls = [GNU_SOURCE] toolchain = {'version': '4.0.6', 'name': 'ictce'} sanity_check_paths = { - 'files': ['bin/stow'], - 'dirs': [] - } + 'files': ['bin/stow'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb index 03fc7dd37c7ef8aa8570bbb3ff2deac9cde9d644..43fedd4e90594fcf5df82a1687af5ef14a4a0280 100644 --- a/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Stow/Stow-1.3.3-ictce-5.3.0.eb @@ -25,8 +25,8 @@ source_urls = [GNU_SOURCE] toolchain = {'name': 'ictce', 'version': '5.3.0'} sanity_check_paths = { - 'files': ['bin/stow'], - 'dirs': [] - } + 'files': ['bin/stow'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/Stride/Stride-1.0-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Stride/Stride-1.0-goolf-1.4.10.eb index 5ab1176c2fe8126ebcd0bc82f9ba168beaf6a713..4982431a8cdbaaff46590ed25706e15f76ab5e85 100644 --- a/easybuild/easyconfigs/s/Stride/Stride-1.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Stride/Stride-1.0-goolf-1.4.10.eb @@ -12,7 +12,7 @@ description = "STRIDE is a program to recognize secondary structural elements in toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['http://ftp.ebi.ac.uk/pub/software/unix/stride/src/'] -sources = ['%(namelower)s.tar.gz' ] +sources = ['%(namelower)s.tar.gz'] files_to_copy = [(['stride'], "bin")] diff --git a/easybuild/easyconfigs/s/Stride/Stride-1.0-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Stride/Stride-1.0-ictce-5.3.0.eb index da61249bcff5dc1f16cb9156dc511092f8ccccb2..1a6fb2182d8aaefd07c24689227484d29ab4b7e2 100644 --- a/easybuild/easyconfigs/s/Stride/Stride-1.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Stride/Stride-1.0-ictce-5.3.0.eb @@ -12,7 +12,7 @@ description = "STRIDE is a program to recognize secondary structural elements in toolchain = {'name': 'ictce', 'version': '5.3.0'} source_urls = ['http://ftp.ebi.ac.uk/pub/software/unix/stride/src/'] -sources = ['%(namelower)s.tar.gz' ] +sources = ['%(namelower)s.tar.gz'] files_to_copy = [(['stride'], "bin")] diff --git a/easybuild/easyconfigs/s/StringTie/StringTie-1.2.2-goolf-1.4.10.eb b/easybuild/easyconfigs/s/StringTie/StringTie-1.2.2-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..70ca06ed7656fef1ac059c6bb80d75d95ab0d2aa --- /dev/null +++ b/easybuild/easyconfigs/s/StringTie/StringTie-1.2.2-goolf-1.4.10.eb @@ -0,0 +1,26 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# sciCORE - University of Basel +# SIB Swiss Institute of Bioinformatics + +easyblock = 'MakeCp' + +name = 'StringTie' +version = '1.2.2' + +homepage = 'http://ccb.jhu.edu/software/stringtie/' +description = """StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['http://ccb.jhu.edu/software/stringtie/dl/'] +sources = [SOURCELOWER_TAR_GZ] + +files_to_copy = [(['stringtie'], 'bin'), 'README', 'LICENSE'] + +sanity_check_paths = { + 'files': ['bin/stringtie'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/s/Subversion/Subversion-1.8.14-foss-2015a.eb b/easybuild/easyconfigs/s/Subversion/Subversion-1.8.14-foss-2015a.eb index 9bae8b637e1c02963100cc848cd72284fe371ae6..be6f1332e2d701f6a307a316f2fcf43badc45774 100644 --- a/easybuild/easyconfigs/s/Subversion/Subversion-1.8.14-foss-2015a.eb +++ b/easybuild/easyconfigs/s/Subversion/Subversion-1.8.14-foss-2015a.eb @@ -31,4 +31,4 @@ sanity_check_paths = { 'dirs': [], } -moduleclass = 'tools' +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.5-intel-2015b-METIS-5.1.0.eb b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.5-intel-2015b-METIS-5.1.0.eb index 49a8ba6feadf6665a65891a1181b59da6f162296..36dee081edeeb252a1824b5613b3e5da1eafb5cf 100644 --- a/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.5-intel-2015b-METIS-5.1.0.eb +++ b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.5-intel-2015b-METIS-5.1.0.eb @@ -11,7 +11,7 @@ source_urls = ['http://faculty.cse.tamu.edu/davis/SuiteSparse/'] sources = [SOURCE_TAR_GZ] patches = [ - 'SuiteSparse-%(version)s_AMD_GNUMakefile.patch', + 'SuiteSparse-%(version)s_AMD_GNUMakefile.patch', 'SuiteSparse-%(version)s_UMFPACK_GNUMakefile.patch', ] diff --git a/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.6-intel-2015b-ParMETIS-4.0.3.eb b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.6-intel-2015b-ParMETIS-4.0.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..f139f365f0d7df49d8fe2053c2d0ddf6115e1c7a --- /dev/null +++ b/easybuild/easyconfigs/s/SuiteSparse/SuiteSparse-4.4.6-intel-2015b-ParMETIS-4.0.3.eb @@ -0,0 +1,20 @@ +name = 'SuiteSparse' +version = '4.4.6' + +homepage = 'http://www.cise.ufl.edu/research/sparse/SuiteSparse/' +description = """SuiteSparse is a collection of libraries manipulate sparse matrices.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'opt': True, 'unroll': True, 'pic': True} + +source_urls = ['http://faculty.cse.tamu.edu/davis/SuiteSparse/'] +sources = [SOURCE_TAR_GZ] + +parmetis = 'ParMETIS' +parmetis_ver = '4.0.3' +versionsuffix = '-%s-%s' % (parmetis, parmetis_ver) +dependencies = [(parmetis, parmetis_ver)] + +maxparallel = 1 + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-2015.06-XC.eb similarity index 77% rename from easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.25.eb rename to easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-2015.06-XC.eb index 0772f31b941fc2ede2b6aa53ad18ff9219221e4e..a075d53839250dd22721a7b8efaff6461e1fb149 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-2015.06-XC.eb @@ -6,8 +6,8 @@ version = '2.1' homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' description = "Szip compression software, providing lossless compression of scientific data" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} -toolchainopts = {'pic': True, 'dynamic': True} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} +toolchainopts = {'pic': True, } source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-2015.11-XC.eb similarity index 77% rename from easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.40.eb rename to easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-2015.11-XC.eb index d98933db4b77e10a3b372b457b2863986e4fb218..6340c632112c384d955af8b0eee29fb2fe98b5d5 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.2.40.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-2015.11-XC.eb @@ -6,8 +6,8 @@ version = '2.1' homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' description = "Szip compression software, providing lossless compression of scientific data" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} -toolchainopts = {'pic': True, 'dynamic': True} +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} +toolchainopts = {'pic': True, } source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb index e5111378c88c913c66f2a5535f1d69dc0299f2b2..4356912900b65786361884ed4fae8d4a002b5936 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-GCC-4.8.1.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2014b.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2014b.eb index 9d1f75c5eb86da7db35e3da92c6efccddcfa985a..d4cbdb38bb41de45c7d7f3f47c856b36b100b29c 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2014b.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2014b.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015a.eb index 5647497c3f48baf5f9cc97c555f8e3ba5a45a6bd..8ee9a367a651bc69659a202966a5da1b9ff65bf8 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015a.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015a.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015b.eb similarity index 84% rename from easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.1.29.eb rename to easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015b.eb index dfcda740abf749e3526172aa9d71843c075f6bfb..ecef46c63a533217e76ec119be73e755d7bd375c 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-foss-2015b.eb @@ -6,8 +6,8 @@ version = '2.1' homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' description = "Szip compression software, providing lossless compression of scientific data" -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} -toolchainopts = {'pic': True, 'dynamic': True} +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'optarch': True, 'pic': True} source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] sources = [SOURCELOWER_TAR_GZ] diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-gmpolf-1.4.8.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-gmpolf-1.4.8.eb index b6931f92b4b776a556e39e6675f6481fcd067b9a..d8346a8fe3d3fee20388046d440e588673076342 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-gmpolf-1.4.8.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-gmpolf-1.4.8.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-goalf-1.1.0-no-OFED.eb index 428ca53264fa8960e3514a6517c2d4d3eb41993c..c930788a686acc6cfc75c59214158e81e9dd9b42 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-goalf-1.1.0-no-OFED.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb index e66bad6682d5a81eebe3d2e107c62cefc7a02622..fa8030d775f837abafddff4295ee08709da70f3d 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.4.10.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.14.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.14.eb index a04f95998388f1630d9fe77142e169964d0606e4..af861220378e273814042988489f4c9946105526 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-goolf-1.5.14.eb @@ -6,7 +6,7 @@ version = '2.1' homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' description = "Szip compression software, providing lossless compression of scientific data" -toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchain = {'name': 'goolf', 'version': '1.5.14'} toolchainopts = {'optarch': True, 'pic': True} source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-3.2.2.u3.eb index f3ea085a384e956110c0a47c12b3962bc8d5b0ba..c3644809e1104ea29cd536f5571763c859a740f5 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-3.2.2.u3.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.0.6.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.0.6.eb index 3b871003de503a517b89de388d2ea6d47c43a30c..f5069f13af4b48ad50ae5ddbcf98de5558b7be09 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.0.6.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.1.13.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.1.13.eb index 508e0b416f5adf083c3fd185c0075fa1b214e47b..0f73cd22ed1cea9ee7b06f3369115920b045a7ca 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-4.1.13.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb index add5a1ec83791c5f6b2f37eb5d36782e50f174bd..57102b24eb418e3af8485dd9061dc2af4ee11f79 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.2.0.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb index b4b3cf902353ecde7a3506362a8cbc321f3f9c48..9fb50c3aaa48363b9d95f11f231618d6a8303d69 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.3.0.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.4.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.4.0.eb index 43e89506aa9109ba49c579d236b3c1d76791cf46..6e85cddcb43ab3110b207a4bda341625e6ae39cf 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.4.0.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb index c69f9f0890413376d6d456418cd0ce2814cb0c6c..874483a81c8806c4582de69473df1d627b29eb03 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-5.5.0.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-6.1.5.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-6.1.5.eb index d90d48702e0469fa4f0aa9cf1081706f00641106..dd9bbe69e877a71b8f14b11c0b47a622fcb6a634 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-6.1.5.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-6.1.5.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb index 169a754e3c3057b0467e1017eadf91c2a71b378d..7ab0bfa52d901b90546c625332b2f4cbd2f251eb 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-ictce-7.1.2.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2014b.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2014b.eb index 5d4845b9932520ecc83d15b627fc4265b6839878..f873b710360dda1026f546c040835ec0cbf6e181 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2014b.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2014b.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015a.eb index 989df56176db956aa83104193a7e05b6280a07db..0c94946cf2c5e58513dcf2f3e279ee2a341bf92d 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015a.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015a.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015b.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015b.eb index 8b003830371e42ab776dc412b4b91ab8f987414d..fdf466086698383784f7dee3734d999f55c39eea 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015b.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2015b.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016a.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..67b0f103595ff77e9f79b37cc7da6c6df4e832f5 --- /dev/null +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-intel-2016a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'Szip' +version = '2.1' + +homepage = 'http://www.hdfgroup.org/doc_resource/SZIP/' +description = "Szip compression software, providing lossless compression of scientific data" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'optarch': True, 'pic': True} + +source_urls = ['http://www.hdfgroup.org/ftp/lib-external/szip/%(version)s/src'] +sources = [SOURCELOWER_TAR_GZ] + +configopts = "--with-pic" + +sanity_check_paths = { + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], + 'dirs': [], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/Szip/Szip-2.1-iqacml-3.7.3.eb b/easybuild/easyconfigs/s/Szip/Szip-2.1-iqacml-3.7.3.eb index 4e7d1f550f63573adbae6b4b78acf0a9ad9893fd..5077e60bd160bd14f89d778c70b4a0a854409917 100644 --- a/easybuild/easyconfigs/s/Szip/Szip-2.1-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/s/Szip/Szip-2.1-iqacml-3.7.3.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] configopts = "--with-pic" sanity_check_paths = { - 'files': ["lib/libsz.a", "lib/libsz.so"] + + 'files': ["lib/libsz.a", "lib/libsz.%s" % SHLIB_EXT] + ["include/%s" % x for x in ["ricehdf.h", "szip_adpt.h", "szlib.h"]], 'dirs': [], } diff --git a/easybuild/easyconfigs/s/scikit-umfpack/scikit-umfpack-0.2.1-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/s/scikit-umfpack/scikit-umfpack-0.2.1-intel-2015b-Python-2.7.10.eb index c30e04d554fc35204f998ead73ef3342bbc93146..f47e1ccb983d0cc65120e39132c6410bf349698c 100644 --- a/easybuild/easyconfigs/s/scikit-umfpack/scikit-umfpack-0.2.1-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/s/scikit-umfpack/scikit-umfpack-0.2.1-intel-2015b-Python-2.7.10.eb @@ -23,7 +23,7 @@ dependencies = [ builddependencies = [ ('SWIG', '3.0.7', versionsuffix), -] +] options = {'modulename': 'scikits'} diff --git a/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.25-Python-2.7.9.eb b/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-2015.06-XC-Python-2.7.9.eb similarity index 89% rename from easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.25-Python-2.7.9.eb rename to easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-2015.06-XC-Python-2.7.9.eb index be06b3e90748364a0510988c8634683a439b8d2b..b47cc99c57917c30efa851c2c1b044f28306db0c 100644 --- a/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.25-Python-2.7.9.eb +++ b/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-2015.06-XC-Python-2.7.9.eb @@ -6,7 +6,7 @@ homepage = 'http://www.scipy.org' description = """SciPy is a collection of mathematical algorithms and convenience functions built on the Numpy extension for Python.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} toolchainopts = {'pic': True} source_urls = [('http://sourceforge.net/projects/scipy/files/scipy/%(version)s', 'download')] diff --git a/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.40-Python-2.7.9.eb b/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-2015.11-XC-Python-2.7.9.eb similarity index 89% rename from easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.40-Python-2.7.9.eb rename to easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-2015.11-XC-Python-2.7.9.eb index adb35688b359f69ea64a185ea7a641195468a338..b69de1aa3b6a1eeed4a305755f4cfd602f563f0f 100644 --- a/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.2.40-Python-2.7.9.eb +++ b/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-2015.11-XC-Python-2.7.9.eb @@ -6,7 +6,7 @@ homepage = 'http://www.scipy.org' description = """SciPy is a collection of mathematical algorithms and convenience functions built on the Numpy extension for Python.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} toolchainopts = {'pic': True} source_urls = [('http://sourceforge.net/projects/scipy/files/scipy/%(version)s', 'download')] diff --git a/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.1.29-Python-2.7.9.eb b/easybuild/easyconfigs/s/scipy/scipy-0.16.1-intel-2015b-Python-2.7.10.eb similarity index 72% rename from easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.1.29-Python-2.7.9.eb rename to easybuild/easyconfigs/s/scipy/scipy-0.16.1-intel-2015b-Python-2.7.10.eb index d6c03f828cc2bd68723d57341873f1a8191cfc2a..bf26ec46a2125a64fc4e81086e8dd2fdf6e6610e 100644 --- a/easybuild/easyconfigs/s/scipy/scipy-0.15.1-CrayGNU-5.1.29-Python-2.7.9.eb +++ b/easybuild/easyconfigs/s/scipy/scipy-0.16.1-intel-2015b-Python-2.7.10.eb @@ -1,19 +1,19 @@ name = 'scipy' -version = '0.15.1' -versionsuffix = '-Python-2.7.9' +version = '0.16.1' +versionsuffix = '-Python-2.7.10' homepage = 'http://www.scipy.org' description = """SciPy is a collection of mathematical algorithms and convenience functions built on the Numpy extension for Python.""" -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} +toolchain = {'name': 'intel', 'version': '2015b'} toolchainopts = {'pic': True} source_urls = [('http://sourceforge.net/projects/scipy/files/scipy/%(version)s', 'download')] sources = [SOURCE_TAR_GZ] dependencies = [ - ('numpy', '1.9.2', versionsuffix), + ('numpy', '1.10.4', versionsuffix), ] moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/scipy/scipy-0.17.0-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/s/scipy/scipy-0.17.0-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..abaaff0546050dad678118cb795240b30e335ab6 --- /dev/null +++ b/easybuild/easyconfigs/s/scipy/scipy-0.17.0-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,19 @@ +name = 'scipy' +version = '0.17.0' +versionsuffix = '-Python-2.7.11' + +homepage = 'http://www.scipy.org' +description = """SciPy is a collection of mathematical algorithms and convenience + functions built on the Numpy extension for Python.""" + +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'pic': True} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +dependencies = [ + ('numpy', '1.10.4', versionsuffix), +] + +moduleclass = 'math' diff --git a/easybuild/easyconfigs/s/segemehl/segemehl-0.1.7-goolf-1.4.10.eb b/easybuild/easyconfigs/s/segemehl/segemehl-0.1.7-goolf-1.4.10.eb index f5e2b9d7dd2acef1aa62d85fd27bd2fc1817db61..0c7b7b159e226748d5c4c0a5fc2ac850d48cf2c2 100644 --- a/easybuild/easyconfigs/s/segemehl/segemehl-0.1.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/s/segemehl/segemehl-0.1.7-goolf-1.4.10.eb @@ -20,12 +20,12 @@ description = """ segemehl is a software to map short sequencer reads to referen toolchain = {'name': 'goolf', 'version': '1.4.10'} source_urls = ['http://www.bioinf.uni-leipzig.de/Software/segemehl/'] -sources = ['%s_%s.tar.gz' % (name, version.replace('.','_'))] +sources = ['%s_%s.tar.gz' % (name, version.replace('.', '_'))] files_to_copy = [(["haarz.x", "lack.x", "segemehl.x"], "bin")] sanity_check_paths = { - 'files': ["bin/%s" % x for x in ["haarz.x", "lack.x" , "segemehl.x"]], + 'files': ["bin/%s" % x for x in ["haarz.x", "lack.x", "segemehl.x"]], 'dirs': [] } diff --git a/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 637462ec29ff5f2a63cdecc706337677342fd364..1283db629b99646be4efb80e304e2eb286f0aba9 100644 --- a/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -22,8 +22,8 @@ py_short_ver = ".".join(pythonversion.split(".")[0:2]) pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) sanity_check_paths = { - 'files': ["bin/easy_install", "%s-%s-py%s.egg" % (pylibdir, version, py_short_ver)], - 'dirs': [] - } + 'files': ["bin/easy_install", "%s-%s-py%s.egg" % (pylibdir, version, py_short_ver)], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-goolf-1.4.10-Python-2.7.3.eb index 517404e7700ec39ba6b9ef51f08d33f00768d730..a7165084656aa06c35ea9f15cab266530499e8ea 100644 --- a/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-goolf-1.4.10-Python-2.7.3.eb @@ -22,8 +22,8 @@ py_short_ver = ".".join(pythonversion.split(".")[0:2]) pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) sanity_check_paths = { - 'files': ["bin/easy_install", "%s-%s-py%s.egg" % (pylibdir, version, py_short_ver)], - 'dirs': [] - } + 'files': ["bin/easy_install", "%s-%s-py%s.egg" % (pylibdir, version, py_short_ver)], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-ictce-4.0.6-Python-2.7.3.eb index 62aa6e2bbcc7bdd1432818377a253e881197ea17..8ec68722c76df8b7792ecbee58a412370bda9a5b 100644 --- a/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-ictce-4.0.6-Python-2.7.3.eb @@ -22,8 +22,8 @@ py_short_ver = ".".join(pythonversion.split(".")[0:2]) pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) sanity_check_paths = { - 'files': ["bin/easy_install", "%s-%s-py%s.egg" % (pylibdir, version, py_short_ver)], - 'dirs': [] - } + 'files': ["bin/easy_install", "%s-%s-py%s.egg" % (pylibdir, version, py_short_ver)], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-ictce-5.3.0-Python-2.7.3.eb index 82de605fe3249e36e71ce7db371b19c2ec0d74e2..cc07ddd7a2744b83895ccc2e660a8d009103d494 100644 --- a/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/s/setuptools/setuptools-0.6c11-ictce-5.3.0-Python-2.7.3.eb @@ -22,8 +22,8 @@ py_short_ver = ".".join(pythonversion.split(".")[0:2]) pylibdir = "lib/python%s/site-packages/%s" % (py_short_ver, name) sanity_check_paths = { - 'files': ["bin/easy_install", "%s-%s-py%s.egg" % (pylibdir, version, py_short_ver)], - 'dirs': [] - } + 'files': ["bin/easy_install", "%s-%s-py%s.egg" % (pylibdir, version, py_short_ver)], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/s/slepc4py/slepc4py-3.6.0-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/s/slepc4py/slepc4py-3.6.0-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..9759c25617341d0e455b50d5bd21b28289002b3e --- /dev/null +++ b/easybuild/easyconfigs/s/slepc4py/slepc4py-3.6.0-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,29 @@ +easyblock = 'PythonPackage' + +name = 'slepc4py' +version = '3.6.0' + +homepage = 'https://bitbucket.org/slepc/slepc4py' +description = "Python bindings for SLEPc, the Scalable Library for Eigenvalue Problem Computations." + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = [PYPI_SOURCE] +sources = [SOURCE_TAR_GZ] + +pyver = '2.7.11' +versionsuffix = '-Python-%s' % pyver + +dependencies = [ + ('Python', pyver), + ('SLEPc', '3.6.2', versionsuffix), + ('petsc4py', '3.6.0', versionsuffix), +] + +pyshortver = '.'.join(pyver.split('.')[:2]) +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%s/site-packages' % pyshortver], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/s/snappy/snappy-1.1.2-GCC-4.9.2.eb b/easybuild/easyconfigs/s/snappy/snappy-1.1.2-GCC-4.9.2.eb index 551924427db6983d92bab23312dfba6e75b0a384..2ab7485885cc4fcf2880abc3508e311541ef55d7 100644 --- a/easybuild/easyconfigs/s/snappy/snappy-1.1.2-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/s/snappy/snappy-1.1.2-GCC-4.9.2.eb @@ -4,7 +4,7 @@ name = 'snappy' version = '1.1.2' # snappy was migrated from code.google.com to github.com and this commit -# corresponds to release 1.1.2 (which they haven't tagged). +# corresponds to release 1.1.2 (which they haven't tagged). # see https://github.com/google/snappy/commit/1ff9be9 commit = '1ff9be9' @@ -21,7 +21,7 @@ sources = ['%s.tar.gz' % commit] preconfigopts = "./autogen.sh && " sanity_check_paths = { - 'files': ['lib/libsnappy.so'], + 'files': ['lib/libsnappy.%s' % SHLIB_EXT], 'dirs': ['include', 'share'] } diff --git a/easybuild/easyconfigs/s/snappy/snappy-1.1.3-GCC-4.9.3.eb b/easybuild/easyconfigs/s/snappy/snappy-1.1.3-GCC-4.9.3.eb index 1043087833fca0e54aba1eb3a677560c0d4a926a..36e8b8b902fdc66928ef6c5ffffd2d91809a657d 100644 --- a/easybuild/easyconfigs/s/snappy/snappy-1.1.3-GCC-4.9.3.eb +++ b/easybuild/easyconfigs/s/snappy/snappy-1.1.3-GCC-4.9.3.eb @@ -4,7 +4,7 @@ name = 'snappy' version = '1.1.3' # snappy was migrated from code.google.com to github.com and this commit -# corresponds to release 1.1.2 (which they haven't tagged). +# corresponds to release 1.1.2 (which they haven't tagged). # see https://github.com/google/snappy/commit/1ff9be9 commit = '1ff9be9' @@ -21,7 +21,7 @@ sources = ['%s.tar.gz' % commit] preconfigopts = "./autogen.sh && " sanity_check_paths = { - 'files': ['lib/libsnappy.so'], + 'files': ['lib/libsnappy.%s' % SHLIB_EXT], 'dirs': ['include', 'share'] } diff --git a/easybuild/easyconfigs/s/snpEff/snpEff-3.6-Java-1.7.0_80.eb b/easybuild/easyconfigs/s/snpEff/snpEff-3.6-Java-1.7.0_80.eb index eb194cd37cc756f5b9ea0038082aa08ff50e90f0..429f565ab3a84087490183b47f96bf7ae2d66ccc 100644 --- a/easybuild/easyconfigs/s/snpEff/snpEff-3.6-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/s/snpEff/snpEff-3.6-Java-1.7.0_80.eb @@ -7,7 +7,7 @@ homepage = 'http://sourceforge.net/projects/snpeff/' description = """SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of genetic variants (such as amino acid changes).""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} java = 'Java' javaver = '1.7.0_80' diff --git a/easybuild/easyconfigs/s/snpEff/snpEff-4.1d-Java-1.7.0_80.eb b/easybuild/easyconfigs/s/snpEff/snpEff-4.1d-Java-1.7.0_80.eb index 8b1570a18150845687b89346f1c32f6eeb2a6e47..ba982d8d09cf9e3ba4e691ec43d0a6ab8108ba72 100644 --- a/easybuild/easyconfigs/s/snpEff/snpEff-4.1d-Java-1.7.0_80.eb +++ b/easybuild/easyconfigs/s/snpEff/snpEff-4.1d-Java-1.7.0_80.eb @@ -7,7 +7,7 @@ homepage = 'http://sourceforge.net/projects/snpeff/' description = """SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of genetic variants (such as amino acid changes).""" -toolchain = {'name': 'dummy', 'version': 'dummy'} +toolchain = {'name': 'dummy', 'version': ''} java = 'Java' javaver = '1.7.0_80' diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-ictce-4.0.6.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-ictce-4.0.6.eb index 0e8273491c3d1dad31c9d470bc62413566117627..97d974db7a59649226964d1b877ab8979eed2d33 100644 --- a/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-ictce-4.0.6.eb @@ -13,7 +13,7 @@ toolchainopts = {'optarch': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://sparsehash.googlecode.com/files'] -#runtest = "check" # 1/7 tests fails (hashtable_test), so disabling 'make check' for now +# runtest = "check" # 1/7 tests fails (hashtable_test), so disabling 'make check' for now sanity_check_paths = { 'files': ['include/sparsehash/%s' % x for x in ['dense_hash_map', 'dense_hash_set', 'sparse_hash_map', diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-ictce-5.3.0.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-ictce-5.3.0.eb index ef04dcc09e4920bffff31faebc94a97964f80eb3..dc0162d6b6dbdfdb99c29a4d04c59a61f397fc67 100644 --- a/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.2-ictce-5.3.0.eb @@ -13,7 +13,7 @@ toolchainopts = {'optarch': True} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://sparsehash.googlecode.com/files'] -#runtest = "check" # 1/7 tests fails (hashtable_test), so disabling 'make check' for now +# runtest = "check" # 1/7 tests fails (hashtable_test), so disabling 'make check' for now sanity_check_paths = { 'files': ['include/sparsehash/%s' % x for x in ['dense_hash_map', 'dense_hash_set', 'sparse_hash_map', diff --git a/easybuild/easyconfigs/s/spglib/spglib-1.7.3-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/s/spglib/spglib-1.7.3-CrayGNU-2015.06-XC.eb similarity index 72% rename from easybuild/easyconfigs/s/spglib/spglib-1.7.3-CrayGNU-5.2.40.eb rename to easybuild/easyconfigs/s/spglib/spglib-1.7.3-CrayGNU-2015.06-XC.eb index 2e71f2ce6be53d7dec7f0e8613cd700076c66cb9..68086c7c98bd733066f7b980cb755a5b9026aa78 100644 --- a/easybuild/easyconfigs/s/spglib/spglib-1.7.3-CrayGNU-5.2.40.eb +++ b/easybuild/easyconfigs/s/spglib/spglib-1.7.3-CrayGNU-2015.06-XC.eb @@ -6,8 +6,7 @@ version = '1.7.3' homepage = 'http://spglib.sourceforge.net/' description = """Spglib is a C library for finding and handling crystal symmetries.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} -toolchainopts = {'dynamic': True, } +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCE_TAR_GZ] @@ -15,7 +14,7 @@ sources = [SOURCE_TAR_GZ] start_dir = '%(name)s-%(version)s' sanity_check_paths = { - 'files': ['lib/libsymspg.a', 'lib/libsymspg.so'], + 'files': ['lib/libsymspg.a', 'lib/libsymspg.%s' % SHLIB_EXT], 'dirs': ['include/spglib'], } diff --git a/easybuild/easyconfigs/s/spglib/spglib-1.7.3-CrayGNU-2015.11-XC.eb b/easybuild/easyconfigs/s/spglib/spglib-1.7.3-CrayGNU-2015.11-XC.eb new file mode 100644 index 0000000000000000000000000000000000000000..bdb5c45a5a9171ee84f0ee11a3f7c10074520d56 --- /dev/null +++ b/easybuild/easyconfigs/s/spglib/spglib-1.7.3-CrayGNU-2015.11-XC.eb @@ -0,0 +1,21 @@ +easyblock = 'ConfigureMake' + +name = 'spglib' +version = '1.7.3' + +homepage = 'http://spglib.sourceforge.net/' +description = """Spglib is a C library for finding and handling crystal symmetries.""" + +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} + +source_urls = [SOURCEFORGE_SOURCE] +sources = [SOURCE_TAR_GZ] + +start_dir = '%(name)s-%(version)s' + +sanity_check_paths = { + 'files': ['lib/libsymspg.a', 'lib/libsymspg.%s' % SHLIB_EXT], + 'dirs': ['include/spglib'], +} + +moduleclass = 'chem' diff --git a/easybuild/easyconfigs/s/spglib/spglib-1.7.3-intel-2015a.eb b/easybuild/easyconfigs/s/spglib/spglib-1.7.3-intel-2015a.eb index f6b34ab67040f9b8b01e2071dd256ddba174c843..073df44cdb3e6193252b58452d92ff3a5da0996a 100644 --- a/easybuild/easyconfigs/s/spglib/spglib-1.7.3-intel-2015a.eb +++ b/easybuild/easyconfigs/s/spglib/spglib-1.7.3-intel-2015a.eb @@ -14,7 +14,7 @@ sources = [SOURCE_TAR_GZ] start_dir = '%(name)s-%(version)s' sanity_check_paths = { - 'files': ['lib/libsymspg.a', 'lib/libsymspg.so'], + 'files': ['lib/libsymspg.a', 'lib/libsymspg.%s' % SHLIB_EXT], 'dirs': ['include/spglib'], } diff --git a/easybuild/easyconfigs/s/spglib/spglib-1.7.4-intel-2015b.eb b/easybuild/easyconfigs/s/spglib/spglib-1.7.4-intel-2015b.eb index 9ecdb68f03ff7d032576844b132b1e0e56480a86..d2670d88eb5039358c5b290ffd9592a8c20318f8 100644 --- a/easybuild/easyconfigs/s/spglib/spglib-1.7.4-intel-2015b.eb +++ b/easybuild/easyconfigs/s/spglib/spglib-1.7.4-intel-2015b.eb @@ -12,7 +12,7 @@ source_urls = [SOURCEFORGE_SOURCE] sources = [SOURCE_TAR_GZ] sanity_check_paths = { - 'files': ['lib/libsymspg.a', 'lib/libsymspg.so'], + 'files': ['lib/libsymspg.a', 'lib/libsymspg.%s' % SHLIB_EXT], 'dirs': ['include/spglib'], } diff --git a/easybuild/easyconfigs/s/synchronicity/synchronicity-1.1.9.1-foss-2015b-R-3.2.3.eb b/easybuild/easyconfigs/s/synchronicity/synchronicity-1.1.9.1-foss-2015b-R-3.2.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..f056af2b4f5cdf4d06bbcf67b640b3e02f6a919a --- /dev/null +++ b/easybuild/easyconfigs/s/synchronicity/synchronicity-1.1.9.1-foss-2015b-R-3.2.3.eb @@ -0,0 +1,36 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Author: Adam Huffman +# The Francis Crick Institute + +easyblock = 'RPackage' + +name = 'synchronicity' +version = '1.1.9.1' + +homepage = 'http://cran.r-project.org/web/packages/%(name)s' +description = """synchronicity: Boost mutex functionality in R""" + +toolchain = {'name': 'foss', 'version': '2015b'} + +source_urls = [ + 'http://cran.r-project.org/src/contrib/', + 'http://cran.r-project.org/src/contrib/Archive/$(name)s/', +] +sources = ['%(name)s_%(version)s.tar.gz'] + +r = 'R' +rver = '3.2.3' +versionsuffix = '-%s-%s' % (r, rver) + +dependencies = [ + (r, rver), + ('BH', '1.60.0-1', '-R-3.2.3'), +] + +sanity_check_paths = { + 'files': [], + 'dirs': ['synchronicity'], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb b/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb index e7a38fab7904dcf624ea28b93dd3e2b9b0947fd2..c502d5385e3f361b41852ef622e04b093d66ee70 100644 --- a/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb +++ b/easybuild/easyconfigs/t/TCC/TCC-0.9.26.eb @@ -11,7 +11,6 @@ easyblock = 'ConfigureMake' name = 'TCC' version = '0.9.26' -# altversions = ['0.9.21', '0.9.22', '0.9.23', '0.9.24', '0.9.25', '0.9.26'] # older versions may require more special handling homepage = 'http://bellard.org/tcc/' description = """The Tiny C Compiler (aka TCC, tCc, or TinyCC) is an x86 and x86-64 C compiler @@ -27,7 +26,7 @@ sources = [SOURCELOWER_TAR_BZ2] source_urls = ['http://download.savannah.nongnu.org/releases/tinycc/'] sanity_check_paths = { - 'files': ["bin/tcc"], + 'files': ["bin/tcc"], 'dirs': [] } diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-ictce-5.5.0.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-ictce-5.5.0.eb new file mode 100644 index 0000000000000000000000000000000000000000..8c3980c54e6b0d6005f8788f29286f2141b2b975 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.2-ictce-5.5.0.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.2' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'ictce', 'version': '5.5.0'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +dependencies = [ + ('zlib', '1.2.7'), +] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-GCC-4.9.3-2.25.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-GCC-4.9.3-2.25.eb new file mode 100644 index 0000000000000000000000000000000000000000..e7800ee7009ceb2171117823bcb56487751b030c --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-GCC-4.9.3-2.25.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.4' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +dependencies = [ + ('zlib', '1.2.8'), +] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-foss-2016a.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-foss-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..3884765bf6d968110796c595db9c1ad5248da8f5 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-foss-2016a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.4' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'foss', 'version': '2016a'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +dependencies = [ + ('zlib', '1.2.8'), +] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2016a.eb b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..20cd9eb96c2310f2e3f22495f770121a1d5580a0 --- /dev/null +++ b/easybuild/easyconfigs/t/Tcl/Tcl-8.6.4-intel-2016a.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'Tcl' +version = '8.6.4' + +homepage = 'http://www.tcl.tk/' +description = """Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, +suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +dependencies = [ + ('zlib', '1.2.8'), +] + +configopts = '--enable-threads EXTRA_INSTALL="install-private-headers"' + +runtest = 'test' + +start_dir = 'unix' + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goalf-1.1.0-no-OFED.eb index 859871997e9690ffa56927dad8f5f5d47c798b97..0a31dc00cbd47034cc553b045f59a7ff194afeeb 100644 --- a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goalf-1.1.0-no-OFED.eb @@ -3,7 +3,7 @@ easyblock = 'ConfigureMake' name = 'TiCCutils' version = '0.3' -homepage = 'http://software.ticc.uvt.nl/' # no real homepage found +homepage = 'http://software.ticc.uvt.nl/' # no real homepage found description = """TiCC utils is a collection of generic C++ software which is used in a lot of programs produced at Tilburg centre for Cognition and Communication (TiCC) at Tilburg University and Centre for Dutch Language and Speech at University of Antwerp.""" @@ -17,7 +17,7 @@ source_urls = [homepage] configopts = '--with-pic' sanity_check_paths = { - 'files': ['lib/libticcutils.so', 'lib/libticcutils.a'], + 'files': ['lib/libticcutils.%s' % SHLIB_EXT, 'lib/libticcutils.a'], 'dirs': ['include/ticcutils'], } diff --git a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goolf-1.4.10.eb index d14a03ca50f051558b49413988f0dc98ef7d7680..1a4e06f1c9ae19051365d5ee517097fa260a3dfb 100644 --- a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-goolf-1.4.10.eb @@ -3,7 +3,7 @@ easyblock = 'ConfigureMake' name = 'TiCCutils' version = '0.3' -homepage = 'http://software.ticc.uvt.nl/' # no real homepage found +homepage = 'http://software.ticc.uvt.nl/' # no real homepage found description = """TiCC utils is a collection of generic C++ software which is used in a lot of programs produced at Tilburg centre for Cognition and Communication (TiCC) at Tilburg University and Centre for Dutch Language and Speech at University of Antwerp.""" @@ -17,7 +17,7 @@ source_urls = [homepage] configopts = '--with-pic' sanity_check_paths = { - 'files': ['lib/libticcutils.so', 'lib/libticcutils.a'], + 'files': ['lib/libticcutils.%s' % SHLIB_EXT, 'lib/libticcutils.a'], 'dirs': ['include/ticcutils'], } diff --git a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-4.1.13.eb b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-4.1.13.eb index 181443391bbcc8247d32e25ff35733de2ed49abc..c735eaf2227ff619e632d5629900e2ab65947bf5 100644 --- a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-4.1.13.eb @@ -3,7 +3,7 @@ easyblock = 'ConfigureMake' name = 'TiCCutils' version = '0.3' -homepage = 'http://software.ticc.uvt.nl/' # no real homepage found +homepage = 'http://software.ticc.uvt.nl/' # no real homepage found description = """TiCC utils is a collection of generic C++ software which is used in a lot of programs produced at Tilburg centre for Cognition and Communication (TiCC) at Tilburg University and Centre for Dutch Language and Speech at University of Antwerp.""" @@ -17,7 +17,7 @@ source_urls = [homepage] configopts = '--with-pic' sanity_check_paths = { - 'files': ['lib/libticcutils.so', 'lib/libticcutils.a'], + 'files': ['lib/libticcutils.%s' % SHLIB_EXT, 'lib/libticcutils.a'], 'dirs': ['include/ticcutils'], } diff --git a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-5.3.0.eb b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-5.3.0.eb index a1560bc07f3c62adf7d1c95d96fd8ae91ae3bac6..0dcf061046a226b84473412687ae98e277a5f283 100644 --- a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.3-ictce-5.3.0.eb @@ -3,7 +3,7 @@ easyblock = 'ConfigureMake' name = 'TiCCutils' version = '0.3' -homepage = 'http://software.ticc.uvt.nl/' # no real homepage found +homepage = 'http://software.ticc.uvt.nl/' # no real homepage found description = """TiCC utils is a collection of generic C++ software which is used in a lot of programs produced at Tilburg centre for Cognition and Communication (TiCC) at Tilburg University and Centre for Dutch Language and Speech at University of Antwerp.""" @@ -17,7 +17,7 @@ source_urls = [homepage] configopts = '--with-pic' sanity_check_paths = { - 'files': ['lib/libticcutils.so', 'lib/libticcutils.a'], + 'files': ['lib/libticcutils.%s' % SHLIB_EXT, 'lib/libticcutils.a'], 'dirs': ['include/ticcutils'], } diff --git a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.7-intel-2015b.eb b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.7-intel-2015b.eb index 80f98c98df5773ef990497986871b64cb220c1f8..563e538143db95cd461c80550f2a9e16a6eb2d00 100644 --- a/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.7-intel-2015b.eb +++ b/easybuild/easyconfigs/t/TiCCutils/TiCCutils-0.7-intel-2015b.eb @@ -3,7 +3,7 @@ easyblock = 'ConfigureMake' name = 'TiCCutils' version = '0.7' -homepage = 'http://software.ticc.uvt.nl/' # no real homepage found +homepage = 'http://software.ticc.uvt.nl/' # no real homepage found description = """TiCC utils is a collection of generic C++ software which is used in a lot of programs produced at Tilburg centre for Cognition and Communication (TiCC) at Tilburg University and Centre for Dutch Language and Speech at University of Antwerp.""" @@ -17,7 +17,7 @@ source_urls = [homepage] configopts = '--with-pic' sanity_check_paths = { - 'files': ['lib/libticcutils.so', 'lib/libticcutils.a'], + 'files': ['lib/libticcutils.%s' % SHLIB_EXT, 'lib/libticcutils.a'], 'dirs': ['include/ticcutils'], } diff --git a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goalf-1.1.0-no-OFED.eb index d4ed9ad26c5957697e5dc280da0e012ce3672ee9..8f1566ed45aac73b5d1e1b6fb4d1860102f5eebc 100644 --- a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goalf-1.1.0-no-OFED.eb @@ -18,14 +18,14 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://software.ticc.uvt.nl/'] dependencies = [ - ('TiCCutils' , '0.3'), + ('TiCCutils', '0.3'), ('libxml2', '2.9.0'), ] configopts = '--with-ticcutils=$EBROOTTICCUTILS' sanity_check_paths = { - 'files': ['bin/timbl', 'lib/libtimbl.so', 'lib/libtimbl.a'], + 'files': ['bin/timbl', 'lib/libtimbl.%s' % SHLIB_EXT, 'lib/libtimbl.a'], 'dirs': ['include/timbl'] } diff --git a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goolf-1.4.10.eb index bfc1a1974a798a1b4dbc9c9c35088c5e32e228ea..4c496b94e6b1a8e81a1f250a41721c02764623b5 100644 --- a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-goolf-1.4.10.eb @@ -18,14 +18,14 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://software.ticc.uvt.nl/'] dependencies = [ - ('TiCCutils' , '0.3'), + ('TiCCutils', '0.3'), ('libxml2', '2.9.0'), ] configopts = '--with-ticcutils=$EBROOTTICCUTILS' sanity_check_paths = { - 'files': ['bin/timbl', 'lib/libtimbl.so', 'lib/libtimbl.a'], + 'files': ['bin/timbl', 'lib/libtimbl.%s' % SHLIB_EXT, 'lib/libtimbl.a'], 'dirs': ['include/timbl'] } diff --git a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-4.1.13.eb b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-4.1.13.eb index 2dc98b30661eb34001624da313c3f0bcfd225d8d..85caf0607378c5ec17537d2fa6cff31eab46ac3c 100644 --- a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-4.1.13.eb @@ -18,14 +18,14 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://software.ticc.uvt.nl/'] dependencies = [ - ('TiCCutils' , '0.3'), + ('TiCCutils', '0.3'), ('libxml2', '2.9.0'), ] configopts = '--with-ticcutils=$EBROOTTICCUTILS' sanity_check_paths = { - 'files': ['bin/timbl', 'lib/libtimbl.so', 'lib/libtimbl.a'], + 'files': ['bin/timbl', 'lib/libtimbl.%s' % SHLIB_EXT, 'lib/libtimbl.a'], 'dirs': ['include/timbl'] } diff --git a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-5.3.0.eb b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-5.3.0.eb index 51cd57a6f7aaec2f24839ab5d013ea537d03bdde..4a0a138713ebbf2115842407680296a32668e389 100644 --- a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.3-ictce-5.3.0.eb @@ -18,14 +18,14 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://software.ticc.uvt.nl/'] dependencies = [ - ('TiCCutils' , '0.3'), + ('TiCCutils', '0.3'), ('libxml2', '2.9.0'), ] configopts = '--with-ticcutils=$EBROOTTICCUTILS' sanity_check_paths = { - 'files': ['bin/timbl', 'lib/libtimbl.so', 'lib/libtimbl.a'], + 'files': ['bin/timbl', 'lib/libtimbl.%s' % SHLIB_EXT, 'lib/libtimbl.a'], 'dirs': ['include/timbl'] } diff --git a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.6-intel-2015b.eb b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.6-intel-2015b.eb index 01bbfe82013bb99b398a985458a0bb243991e714..d47e571a9088036878a31a6fe7be80b670efb9b8 100644 --- a/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.6-intel-2015b.eb +++ b/easybuild/easyconfigs/t/TiMBL/TiMBL-6.4.6-intel-2015b.eb @@ -18,14 +18,14 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://software.ticc.uvt.nl/'] dependencies = [ - ('TiCCutils' , '0.7'), + ('TiCCutils', '0.7'), ('libxml2', '2.9.2'), ] configopts = '--with-ticcutils=$EBROOTTICCUTILS' sanity_check_paths = { - 'files': ['bin/timbl', 'lib/libtimbl.so', 'lib/libtimbl.a'], + 'files': ['bin/timbl', 'lib/libtimbl.%s' % SHLIB_EXT, 'lib/libtimbl.a'], 'dirs': ['include/timbl'] } diff --git a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goalf-1.1.0-no-OFED.eb index 456eed6b562cdd254d82829888c8811a05110927..1a655e2f3634c459f7a8621282314eb250f560d2 100644 --- a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goalf-1.1.0-no-OFED.eb @@ -15,7 +15,7 @@ toolchainopts = {'optarch': True, 'pic': True, 'opt': True, 'unroll': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://chasen.org/~taku/software/TinySVM/src'] -#original CXXFLAGS: -Wall -O9 -funroll-all-loops -finline -ffast-math +# original CXXFLAGS: -Wall -O9 -funroll-all-loops -finline -ffast-math buildopts = 'CXXFLAGS="$CXXFLAGS -Wall -funroll-all-loops -finline -ffast-math"' sanity_check_paths = { diff --git a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goolf-1.4.10.eb b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goolf-1.4.10.eb index 3b1c60d1100caa76ecadc789b999ff911d7379c3..2a3ee4cd04dae201b61ac836090228a7443127a1 100644 --- a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-goolf-1.4.10.eb @@ -15,7 +15,7 @@ toolchainopts = {'optarch': True, 'pic': True, 'opt': True, 'unroll': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://chasen.org/~taku/software/TinySVM/src'] -#original CXXFLAGS: -Wall -O9 -funroll-all-loops -finline -ffast-math +# original CXXFLAGS: -Wall -O9 -funroll-all-loops -finline -ffast-math buildopts = 'CXXFLAGS="$CXXFLAGS -Wall -funroll-all-loops -finline -ffast-math"' sanity_check_paths = { diff --git a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-4.1.13.eb b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-4.1.13.eb index 7676e956fa983db23184fc44aca426fa56e8bd92..4191830cf2984cb648f028d95c6379b0bfd1234f 100644 --- a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-4.1.13.eb @@ -15,7 +15,7 @@ toolchainopts = {'optarch': True, 'pic': True, 'opt': True, 'unroll': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://chasen.org/~taku/software/TinySVM/src'] -#original CXXFLAGS: -Wall -O9 -funroll-all-loops -finline -ffast-math +# original CXXFLAGS: -Wall -O9 -funroll-all-loops -finline -ffast-math buildopts = 'CXXFLAGS="$CXXFLAGS -Wall -funroll-all-loops -finline"' sanity_check_paths = { diff --git a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-5.3.0.eb b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-5.3.0.eb index 7c112ec10504829091c1161da50ede5eb304d709..3eb47571e167fea741c2e2f7fda4409230a532cd 100644 --- a/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/TinySVM/TinySVM-0.09-ictce-5.3.0.eb @@ -15,7 +15,7 @@ toolchainopts = {'optarch': True, 'pic': True, 'opt': True, 'unroll': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://chasen.org/~taku/software/TinySVM/src'] -#original CXXFLAGS: -Wall -O9 -funroll-all-loops -finline -ffast-math +# original CXXFLAGS: -Wall -O9 -funroll-all-loops -finline -ffast-math buildopts = 'CXXFLAGS="$CXXFLAGS -Wall -funroll-all-loops -finline"' sanity_check_paths = { diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-GCC-4.9.3-2.25-no-X11.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-GCC-4.9.3-2.25-no-X11.eb new file mode 100644 index 0000000000000000000000000000000000000000..a8245c85800e9d02b4fb9c4b4d30b030d906a942 --- /dev/null +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-GCC-4.9.3-2.25-no-X11.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Tk' +version = '8.6.4' +versionsuffix = '-no-X11' + +homepage = 'http://www.tcl.tk/' +description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building + a graphical user interface (GUI) in many different programming languages.""" + +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +patches = ['Tk-%(version)s_different-prefix-with-tcl.patch'] + +dependencies = [ + ('Tcl', version), +] + +configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib --without-x CFLAGS="-I$EBROOTTCL/include"' + +start_dir = 'unix' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-foss-2016a-no-X11.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-foss-2016a-no-X11.eb new file mode 100644 index 0000000000000000000000000000000000000000..6f98f7076c68817fedaf272059c5e078c00f4b99 --- /dev/null +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-foss-2016a-no-X11.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Tk' +version = '8.6.4' +versionsuffix = '-no-X11' + +homepage = 'http://www.tcl.tk/' +description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building + a graphical user interface (GUI) in many different programming languages.""" + +toolchain = {'name': 'foss', 'version': '2016a'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +patches = ['Tk-%(version)s_different-prefix-with-tcl.patch'] + +dependencies = [ + ('Tcl', version), +] + +configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib --without-x CFLAGS="-I$EBROOTTCL/include"' + +start_dir = 'unix' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2016a-no-X11.eb b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2016a-no-X11.eb new file mode 100644 index 0000000000000000000000000000000000000000..9f46cbbff73ab04a958cea81030729c38f5b8be1 --- /dev/null +++ b/easybuild/easyconfigs/t/Tk/Tk-8.6.4-intel-2016a-no-X11.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'Tk' +version = '8.6.4' +versionsuffix = '-no-X11' + +homepage = 'http://www.tcl.tk/' +description = """Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building + a graphical user interface (GUI) in many different programming languages.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ["http://prdownloads.sourceforge.net/tcl"] +sources = ['%(namelower)s%(version)s-src.tar.gz'] + +patches = ['Tk-%(version)s_different-prefix-with-tcl.patch'] + +dependencies = [ + ('Tcl', version), +] + +configopts = '--enable-threads --with-tcl=$EBROOTTCL/lib --without-x CFLAGS="-I$EBROOTTCL/include"' + +start_dir = 'unix' + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/t/Tornado/Tornado-2012.09.06-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/Tornado/Tornado-2012.09.06-goalf-1.1.0-no-OFED.eb index 3ad1ac0bbd7b62bcb8b0ef92181d03eb553b07d3..7e0e189b7c0c2cfe018f50b8d59a0bc1e3b1baa6 100644 --- a/easybuild/easyconfigs/t/Tornado/Tornado-2012.09.06-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/Tornado/Tornado-2012.09.06-goalf-1.1.0-no-OFED.eb @@ -4,7 +4,7 @@ version = '2012.09.06' homepage = 'http://www.dhigroup.com/' description = """Tornado is a new kernel for modelling and virtual experimentation (i.e. any evaluation of a model) in the domain of water quality management""" - + toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'pic': True, 'opt': True, 'optarch': True} diff --git a/easybuild/easyconfigs/t/Trilinos/Trilinos-10.12.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/t/Trilinos/Trilinos-10.12.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb index b287384487f3601ca124cee40819d7e3904e0a6e..4db1cfdda126cdb0637833a38109e1b192304184 100644 --- a/easybuild/easyconfigs/t/Trilinos/Trilinos-10.12.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/t/Trilinos/Trilinos-10.12.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -18,11 +18,11 @@ patches = ['fix-parmetis.patch'] # order matters! # ParMETIS needs to go after SCOTCH (because of incldue dirs) dependencies = [ - ('Boost', '1.49.0', versionsuffix ), - ('SCOTCH', '5.1.12b_esmumps'), - ('SuiteSparse', '3.7.0', '-withparmetis'), - ('ParMETIS', '4.0.2') - ] + ('Boost', '1.49.0', versionsuffix), + ('SCOTCH', '5.1.12b_esmumps'), + ('SuiteSparse', '3.7.0', '-withparmetis'), + ('ParMETIS', '4.0.2') +] builddependencies = [('CMake', '2.8.4')] diff --git a/easybuild/easyconfigs/t/Trilinos/Trilinos-10.12.2-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/t/Trilinos/Trilinos-10.12.2-goolf-1.4.10-Python-2.7.3.eb index 1ec0f27b136afa1db7106a269abd85bc672798cf..ec1d8d6521db768c8960132536aab580befc8363 100644 --- a/easybuild/easyconfigs/t/Trilinos/Trilinos-10.12.2-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/t/Trilinos/Trilinos-10.12.2-goolf-1.4.10-Python-2.7.3.eb @@ -14,18 +14,18 @@ source_urls = ['http://trilinos.sandia.gov/download/files/'] sources = ['%s-%s-Source.tar.gz' % (name.lower(), version)] patches = [ - 'fix-parmetis.patch', - 'Trilinos_GCC-4.7.patch', - ] + 'fix-parmetis.patch', + 'Trilinos_GCC-4.7.patch', +] # order matters! # ParMETIS needs to go after SCOTCH (because of incldue dirs) dependencies = [ - ('Boost', '1.49.0', versionsuffix ), - ('SCOTCH', '5.1.12b_esmumps'), - ('SuiteSparse', '3.7.0', '-withparmetis'), - ('ParMETIS', '4.0.2') - ] + ('Boost', '1.49.0', versionsuffix), + ('SCOTCH', '5.1.12b_esmumps'), + ('SuiteSparse', '3.7.0', '-withparmetis'), + ('ParMETIS', '4.0.2') +] builddependencies = [('CMake', '2.8.4')] diff --git a/easybuild/easyconfigs/t/Trilinos/Trilinos-10.12.2-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/t/Trilinos/Trilinos-10.12.2-ictce-4.0.6-Python-2.7.3.eb index cc0fc985e002a319f7a952d795963e0c7c1920dd..b9ba5e4b73224083eccea73b29c63f873b3b43c7 100644 --- a/easybuild/easyconfigs/t/Trilinos/Trilinos-10.12.2-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/t/Trilinos/Trilinos-10.12.2-ictce-4.0.6-Python-2.7.3.eb @@ -18,16 +18,16 @@ patches = ['fix-parmetis.patch'] # order matters! # ParMETIS needs to go after SCOTCH (because of incldue dirs) dependencies = [ - ('Boost', '1.49.0', versionsuffix ), - ('SCOTCH', '5.1.12b_esmumps'), - ('SuiteSparse', '3.7.0', '-withparmetis'), - ('ParMETIS', '4.0.2') - ] + ('Boost', '1.49.0', versionsuffix), + ('SCOTCH', '5.1.12b_esmumps'), + ('SuiteSparse', '3.7.0', '-withparmetis'), + ('ParMETIS', '4.0.2') +] builddependencies = [('CMake', '2.8.4')] # Kokkos build is broken with ictce/4.0.6 # yields internal error: 0_1670 for packages/kokkos/LinAlg/Kokkos_DefaultArithmetic.hpp (line 827) skip_exts = ["Kokkos", "Tpetra"] - + moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/t/Trilinos/Trilinos-10.12.2-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/t/Trilinos/Trilinos-10.12.2-ictce-5.3.0-Python-2.7.3.eb index a7d22afde05ecff870f2bbf08391234f69def5df..4ee95fa9094e8fa640d5886f48cdecc5d0e6abb9 100644 --- a/easybuild/easyconfigs/t/Trilinos/Trilinos-10.12.2-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/t/Trilinos/Trilinos-10.12.2-ictce-5.3.0-Python-2.7.3.eb @@ -19,16 +19,16 @@ patches = ['fix-parmetis.patch'] # order matters! # ParMETIS needs to go after SCOTCH (because of incldue dirs) dependencies = [ - ('Boost', '1.49.0', versionsuffix ), - ('SCOTCH', '5.1.12b_esmumps'), - ('SuiteSparse', '3.7.0', '-withparmetis'), - ('ParMETIS', '4.0.2') - ] + ('Boost', '1.49.0', versionsuffix), + ('SCOTCH', '5.1.12b_esmumps'), + ('SuiteSparse', '3.7.0', '-withparmetis'), + ('ParMETIS', '4.0.2') +] builddependencies = [('CMake', '2.8.4')] # Kokkos build is broken with ictce/4.0.6 # yields internal error: 0_1670 for packages/kokkos/LinAlg/Kokkos_DefaultArithmetic.hpp (line 827) skip_exts = ["Kokkos", "Tpetra"] - + moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/t/Trilinos/Trilinos-12.4.2-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/t/Trilinos/Trilinos-12.4.2-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..57bd77ec8b5c5f57ddd5096bf00451e300a4e1eb --- /dev/null +++ b/easybuild/easyconfigs/t/Trilinos/Trilinos-12.4.2-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,37 @@ +name = 'Trilinos' +version = '12.4.2' +versionsuffix = '-Python-2.7.11' + +homepage = 'http://trilinos.sandia.gov/' +description = """The Trilinos Project is an effort to develop algorithms and enabling technologies + within an object-oriented software framework for the solution of large-scale, complex multi-physics + engineering and scientific problems. A unique design feature of Trilinos is its focus on packages.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'usempi': True, 'pic': True, 'strict': True} + +source_urls = ['http://trilinos.csbsju.edu/download/files/'] +sources = ['%(namelower)s-%(version)s-Source.tar.gz'] + +patches = ['fix-parmetis.patch'] + +dependencies = [ + ('Boost', '1.59.0', versionsuffix), + ('SCOTCH', '6.0.4'), + ('SuiteSparse', '4.4.6', '-ParMETIS-4.0.3'), + ('ParMETIS', '4.0.3'), + ('netCDF', '4.3.3.1'), + ('MATIO', '1.5.2'), + ('GLM', '0.9.7.2'), +] + +builddependencies = [('CMake', '3.4.1')] + +# STK Classic is deprecated/broken, STKDoc_tests needs to be disabled too because of it +# see https://trilinos.org/oldsite/release_notes-11.10.html and https://github.com/trilinos/Trilinos/issues/19 +skip_exts = ['STKClassic', 'STKDoc_tests'] + +# too parallel is too slow, and may cause build/tests to fail +maxparallel = 10 + +moduleclass = 'numlib' diff --git a/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.3.7-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.3.7-goolf-1.4.10.eb index dacf5b481cc4a4634fdd1bb610f2e13ed616c830..f895fa63df17d271a9420bf128e75370d53b1a18 100644 --- a/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.3.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.3.7-goolf-1.4.10.eb @@ -16,8 +16,8 @@ source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/%(namelower)s' install_cmd = "cp -a %(namelower)s_zip/* %(installdir)s && chmod +x %(installdir)s/%(namelower)s" dependencies = [ - ('FastQC', '0.10.1', '-Java-1.7.0_80', True), - ('cutadapt', '1.5', '-Python-2.7.10'), + ('FastQC', '0.10.1', '-Java-1.7.0_80', True), + ('cutadapt', '1.5', '-Python-2.7.10'), ] sanity_check_paths = { diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.0.4-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2.0.4-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..1f448f04b91840bdb1ad1eecfb5232ea0f4ebe55 --- /dev/null +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.0.4-goolf-1.4.10.eb @@ -0,0 +1,28 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +name = 'Trinity' +version = '2.0.4' + +homepage = 'http://trinityrnaseq.github.io/' +description = """Trinity represents a novel method for the efficient and robust de novo reconstruction + of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, + Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['https://github.com/trinityrnaseq/trinityrnaseq/archive/'] +sources = ['v%(version)s.tar.gz'] + +patches = ['Trinity-%(version)s_plugins-Makefile.patch'] + +dependencies = [ + ('Java', '1.7.0_80', '', True), + ('ant', '1.9.6', '-Java-%(javaver)s', True), + ('ncurses', '5.9'), + ('zlib', '1.2.8'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.0.4_plugins-Makefile.patch b/easybuild/easyconfigs/t/Trinity/Trinity-2.0.4_plugins-Makefile.patch new file mode 100644 index 0000000000000000000000000000000000000000..0fa19b8876fac6eb72112a2563226465986fa589 --- /dev/null +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.0.4_plugins-Makefile.patch @@ -0,0 +1,24 @@ +fix linking against EB-provided zlib +author: Kenneth Hoste (Ghent University) +--- trinityrnaseq-2.0.4/trinity-plugins/Makefile.orig 2015-02-14 20:34:09.000000000 +0100 ++++ trinityrnaseq-2.0.4/trinity-plugins/Makefile 2016-02-16 11:21:03.430691000 +0100 +@@ -13,6 +13,9 @@ + endif + + ++CC?=gcc ++CXX?=g++ ++ + ####################### + ### Required by Trinity + ####################### +@@ -52,7 +55,8 @@ + + rsem: + tar -zxvf ${RSEM_CODE}.tar.gz +- cd ${RSEM_CODE} && $(MAKE) LIBCURSES="${RSEM_LIBCURSES}" ++ sed -i -e 's@-lz@-L${EBROOTZLIB}/lib -lz@g' ${RSEM_CODE}/Makefile ++ cd ${RSEM_CODE} && $(MAKE) LIBCURSES="${RSEM_LIBCURSES}" LIBPATH="-L${EBROOTNCURSES}/lib -L${EBROOTZLIB}/lib" + ln -sf ${RSEM_CODE} rsem + + transdecoder_target: diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.0.6-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2.0.6-goolf-1.4.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..30e64b353f604b806efe2b751dad742dd0f658f8 --- /dev/null +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.0.6-goolf-1.4.10.eb @@ -0,0 +1,28 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +name = 'Trinity' +version = '2.0.6' + +homepage = 'http://trinityrnaseq.github.io/' +description = """Trinity represents a novel method for the efficient and robust de novo reconstruction + of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, + Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads.""" + +toolchain = {'name': 'goolf', 'version': '1.4.10'} + +source_urls = ['https://github.com/trinityrnaseq/trinityrnaseq/archive/'] +sources = ['v%(version)s.tar.gz'] + +patches = ['Trinity-2.0.4_plugins-Makefile.patch'] + +dependencies = [ + ('Java', '1.7.0_80', '', True), + ('ant', '1.9.6', '-Java-%(javaver)s', True), + ('ncurses', '5.9'), + ('zlib', '1.2.8'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.1.1-intel-2015b.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2.1.1-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..5f116c4b08e19272176c1f95631dabc8bfeb8f56 --- /dev/null +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.1.1-intel-2015b.eb @@ -0,0 +1,37 @@ +name = 'Trinity' +version = '2.1.1' + +homepage = 'http://trinityrnaseq.github.io' +description = """Trinity represents a novel method for the efficient and robust de novo reconstruction + of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, + Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads.""" +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'optarch': True} + +source_urls = ['https://github.com/trinityrnaseq/trinityrnaseq/archive/'] + +java = 'Java' +javaver = '1.8.0_66' + +sources = ['v%(version)s.tar.gz'] + +patches = [ + 'chrysalis_commandline_noconsts_2012-10-05.patch', + 'Trinity-%(version)s_jellyfish-Makefile.patch', +] + +builddependencies = [ + ('Autotools', '20150215', '', ('GNU', '4.9.3-2.25')), +] + +dependencies = [ + (java, javaver, '', True), + ('ant', '1.9.6', '-%s-%s' % (java, javaver), True), + ('Bowtie', '1.1.2'), + ('Bowtie2', '2.2.6'), + ('ncurses', '5.9',), + ('zlib', '1.2.8'), + ('Perl', '5.20.3'), +] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2.1.1_jellyfish-Makefile.patch b/easybuild/easyconfigs/t/Trinity/Trinity-2.1.1_jellyfish-Makefile.patch new file mode 100644 index 0000000000000000000000000000000000000000..175210f9efb94d5021a474bd11a2ab1bb13ea5b5 --- /dev/null +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2.1.1_jellyfish-Makefile.patch @@ -0,0 +1,30 @@ +use EasyBuild-provided zlib, don't hardcode gcc/g++ for jellyfish plugin +authors: B. Hajgato (Vrije Universiteit Brussel), Kenneth Hoste (HPC-UGent) +--- trinityrnaseq-2.1.1/trinity-plugins/Makefile.orig 2015-10-15 14:07:11.000000000 +0200 ++++ trinityrnaseq-2.1.1/trinity-plugins/Makefile 2016-01-12 13:42:35.197202000 +0100 +@@ -2,6 +2,9 @@ + JELLYFISH_CODE="jellyfish-2.1.4" + HTSLIB_CODE="htslib.github.Aug182015.tar.gz" + ++CC?=gcc ++CXX?=g++ ++ + ####################### + ### Required by Trinity + ####################### +@@ -18,12 +21,13 @@ + + samtools: + tar xvf samtools-0.1.19.tar.bz2 +- cd samtools-0.1.19 && $(MAKE) LIBPATH=-ltinfo ++ sed -e 's/ -lz/ -L\$$\{EBROOTZLIB\}\/lib -lz/' -i samtools-0.1.19/misc/Makefile ++ cd samtools-0.1.19 && $(MAKE) LIBPATH=-L${EBROOTZLIB}/lib + mv samtools-0.1.19/samtools ./BIN/. + + jellyfish: + tar -zxvf ${JELLYFISH_CODE}.tar.gz && ln -sf ${JELLYFISH_CODE} tmp.jellyfish +- cd ./tmp.jellyfish/ && ./configure CC=gcc CXX=g++ --enable-static --disable-shared --prefix=`pwd` && $(MAKE) LDFLAGS="-lpthread -all-static" AM_CPPFLAGS="-Wall -Wnon-virtual-dtor -I"`pwd`"/include" ++ cd ./tmp.jellyfish/ && ./configure CC=$(CC) CXX=$(CXX) --enable-static --disable-shared --prefix=`pwd` && $(MAKE) LDFLAGS="-lpthread -all-static" AM_CPPFLAGS="-Wall -Wnon-virtual-dtor -I"`pwd`"/include" + mv tmp.jellyfish jellyfish + + htslib_target: diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2012-10-05-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2012-10-05-goalf-1.1.0-no-OFED.eb index 24e51d7fbb93d83c1d6bcd10419461e693ae2c19..c40d2edf578b89df7f05966199627da6c5d1af3b 100644 --- a/easybuild/easyconfigs/t/Trinity/Trinity-2012-10-05-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2012-10-05-goalf-1.1.0-no-OFED.eb @@ -13,21 +13,21 @@ source_urls = [('http://sourceforge.net/projects/trinityrnaseq/files', 'download sources = ['trinityrnaseq_r%s.tgz' % version] patches = [ - 'chrysalis_commandline_noconsts_2012-10-05.patch', - 'cmd_forker_taskset_2012-10-05.patch', - 'trinitypl_increase_max_cpu_2012-10-05.patch', - 'rsem-plugin_makefile-cxx.patch', - ] + 'chrysalis_commandline_noconsts_2012-10-05.patch', + 'cmd_forker_taskset_2012-10-05.patch', + 'trinitypl_increase_max_cpu_2012-10-05.patch', + 'rsem-plugin_makefile-cxx.patch', +] java = 'Java' javaver = '1.7.0_10' dependencies = [ - (java, javaver, '', True), - ('ant', '1.8.4', '-%s-%s' % (java, javaver), True), - ('ncurses', '5.9'), - ('zlib', '1.2.7'), - ] + (java, javaver, '', True), + ('ant', '1.8.4', '-%s-%s' % (java, javaver), True), + ('ncurses', '5.9'), + ('zlib', '1.2.7'), +] bwapluginver = "0.5.7" RSEMmod = True diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2012-10-05-goolf-1.4.10.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2012-10-05-goolf-1.4.10.eb index 3a3bdebbaa9ea76c64aafbd509ed163b042254e3..e966db8b0a5d5c323daec5a9d338a62d7b24ba65 100644 --- a/easybuild/easyconfigs/t/Trinity/Trinity-2012-10-05-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2012-10-05-goolf-1.4.10.eb @@ -13,22 +13,22 @@ source_urls = [('http://sourceforge.net/projects/trinityrnaseq/files', 'download sources = ['trinityrnaseq_r%s.tgz' % version] patches = [ - 'chrysalis_commandline_noconsts_2012-10-05.patch', - 'cmd_forker_taskset_2012-10-05.patch', - 'trinitypl_increase_max_cpu_2012-10-05.patch', - 'rsem-plugin_makefile-cxx.patch', - 'trinity_jellyfish-GCC-4.7.patch', - ] + 'chrysalis_commandline_noconsts_2012-10-05.patch', + 'cmd_forker_taskset_2012-10-05.patch', + 'trinitypl_increase_max_cpu_2012-10-05.patch', + 'rsem-plugin_makefile-cxx.patch', + 'trinity_jellyfish-GCC-4.7.patch', +] java = 'Java' javaver = '1.7.0_10' dependencies = [ - (java, javaver, '', True), - ('ant', '1.8.4', '-%s-%s' % (java, javaver), True), - ('ncurses', '5.9'), - ('zlib', '1.2.7'), - ] + (java, javaver, '', True), + ('ant', '1.8.4', '-%s-%s' % (java, javaver), True), + ('ncurses', '5.9'), + ('zlib', '1.2.7'), +] bwapluginver = "0.5.7" RSEMmod = True diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2012-10-05-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2012-10-05-ictce-3.2.2.u3.eb index d7180a3903b8211f52f4e4bbb34eb524e9307a9f..62366fe15cb2467684291e669dc03f1bc4ef682b 100644 --- a/easybuild/easyconfigs/t/Trinity/Trinity-2012-10-05-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2012-10-05-ictce-3.2.2.u3.eb @@ -13,22 +13,22 @@ source_urls = [('http://sourceforge.net/projects/trinityrnaseq/files', 'download sources = ['trinityrnaseq_r%s.tgz' % version] patches = [ - 'chrysalis_commandline_noconsts_2012-10-05.patch', - 'cmd_forker_taskset_2012-10-05.patch', - 'trinitypl_increase_max_cpu_2012-10-05.patch', - 'rsem-plugin_makefile-cxx.patch', - 'trinity_ictce-no-jellyfish.patch', - ] + 'chrysalis_commandline_noconsts_2012-10-05.patch', + 'cmd_forker_taskset_2012-10-05.patch', + 'trinitypl_increase_max_cpu_2012-10-05.patch', + 'rsem-plugin_makefile-cxx.patch', + 'trinity_ictce-no-jellyfish.patch', +] java = 'Java' javaver = '1.7.0_10' dependencies = [ - (java, javaver, '', True), - ('ant', '1.8.4', '-%s-%s' % (java, javaver), True), - ('ncurses', '5.9'), - ('zlib', '1.2.7'), - ] + (java, javaver, '', True), + ('ant', '1.8.4', '-%s-%s' % (java, javaver), True), + ('ncurses', '5.9'), + ('zlib', '1.2.7'), +] bwapluginver = "0.5.7" RSEMmod = True diff --git a/easybuild/easyconfigs/t/Trinity/Trinity-2012-10-05-ictce-5.3.0.eb b/easybuild/easyconfigs/t/Trinity/Trinity-2012-10-05-ictce-5.3.0.eb index 76aac8d3344ed18a14fbb1d7d9c680a4d33f3ded..7f5d5792225c23d98f6900579d56f0844fc26819 100644 --- a/easybuild/easyconfigs/t/Trinity/Trinity-2012-10-05-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/Trinity/Trinity-2012-10-05-ictce-5.3.0.eb @@ -14,22 +14,22 @@ source_urls = [('http://sourceforge.net/projects/trinityrnaseq/files', 'download sources = ['trinityrnaseq_r%s.tgz' % version] patches = [ - 'chrysalis_commandline_noconsts_2012-10-05.patch', - 'cmd_forker_taskset_2012-10-05.patch', - 'trinitypl_increase_max_cpu_2012-10-05.patch', - 'rsem-plugin_makefile-cxx.patch', - 'trinity_ictce-no-jellyfish.patch', - ] + 'chrysalis_commandline_noconsts_2012-10-05.patch', + 'cmd_forker_taskset_2012-10-05.patch', + 'trinitypl_increase_max_cpu_2012-10-05.patch', + 'rsem-plugin_makefile-cxx.patch', + 'trinity_ictce-no-jellyfish.patch', +] java = 'Java' javaver = '1.7.0_10' dependencies = [ - (java, javaver, '', True), - ('ant', '1.8.4', '-%s-%s' % (java, javaver), True), - ('ncurses', '5.9'), - ('zlib', '1.2.7'), - ] + (java, javaver, '', True), + ('ant', '1.8.4', '-%s-%s' % (java, javaver), True), + ('ncurses', '5.9'), + ('zlib', '1.2.7'), +] bwapluginver = "0.5.7" RSEMmod = True diff --git a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goalf-1.1.0-no-OFED.eb index ae48804dd31275684916efdfdeb93d32863402f7..59880307584f81d00246d1a8dc2c74a5c92da758 100644 --- a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goalf-1.1.0-no-OFED.eb @@ -18,7 +18,7 @@ source_urls = ['http://prdownloads.sourceforge.net/otcl-tclcl'] tcl_ver = '8.5.12' dependencies = [ - ('Tcl',tcl_ver), + ('Tcl', tcl_ver), ('Tk', tcl_ver), ('otcl', '1.14'), ] diff --git a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goolf-1.4.10.eb b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goolf-1.4.10.eb index 76b89b4e3d47e232136a7df4787ff8798c9ba5b1..0fa1db9859b2b7b15474f14e32149e7e1b12d11a 100644 --- a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-goolf-1.4.10.eb @@ -18,7 +18,7 @@ source_urls = ['http://prdownloads.sourceforge.net/otcl-tclcl'] tcl_ver = '8.5.12' dependencies = [ - ('Tcl',tcl_ver), + ('Tcl', tcl_ver), ('Tk', tcl_ver), ('otcl', '1.14'), ] diff --git a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-ictce-5.3.0.eb b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-ictce-5.3.0.eb index 70183e7b6fbce3042e5a64645e7aae6b1df63e23..7009190de26307d6bc455139c22fdcee772df7e3 100644 --- a/easybuild/easyconfigs/t/tclcl/tclcl-1.20-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/t/tclcl/tclcl-1.20-ictce-5.3.0.eb @@ -18,7 +18,7 @@ source_urls = ['http://prdownloads.sourceforge.net/otcl-tclcl'] tcl_ver = '8.5.12' dependencies = [ - ('Tcl',tcl_ver), + ('Tcl', tcl_ver), ('Tk', tcl_ver), ('otcl', '1.14'), ] diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.06-XC.eb similarity index 93% rename from easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.25.eb rename to easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.06-XC.eb index c678adaf683a57839c16531ca33c276f4031143b..c5db50a961e7c4b84b4936d18e8a488a84d5055a 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.06-XC.eb @@ -20,8 +20,7 @@ description = """Tcsh is an enhanced, but completely compatible version of the B processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} -toolchainopts = {'dynamic': True} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} sources = [SOURCELOWER_TAR_GZ] source_urls = [ diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.11-XC.eb similarity index 93% rename from easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.40.eb rename to easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.11-XC.eb index 171465e133945344b370cb31c81e9ce2b73c8938..3b456bd5d583137c6487c112d50b964b3fef54dd 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.2.40.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-2015.11-XC.eb @@ -20,8 +20,7 @@ description = """Tcsh is an enhanced, but completely compatible version of the B processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} -toolchainopts = {'dynamic': True} +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} sources = [SOURCELOWER_TAR_GZ] source_urls = [ diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.1.29.eb deleted file mode 100644 index b62190e55f4ee003cc0f723aa4ddedcdf960d91c..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-CrayGNU-5.1.29.eb +++ /dev/null @@ -1,39 +0,0 @@ -## -# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild -# -# Copyright:: Copyright 2012-2013 University of Luxembourg/Computer Science and Communications Research Unit -# Authors:: Valentin Plugaru -# License:: MIT/GPL -# $Id$ -# -# This work implements a part of the HPCBIOS project and is a component of the policy: -# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_05-06.html -## -easyblock = 'ConfigureMake' - -name = 'tcsh' -version = '6.18.01' - -homepage = 'http://www.tcsh.org' -description = """Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). - It is a command language interpreter usable both as an interactive login shell and a shell script command - processor. It includes a command-line editor, programmable word completion, spelling correction, a history - mechanism, job control and a C-like syntax.""" - -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} -toolchainopts = {'dynamic': True} - -sources = [SOURCELOWER_TAR_GZ] -source_urls = [ - 'ftp://ftp.astron.com/pub/%(namelower)s', - 'ftp://ftp.astron.com/pub/%(namelower)s/old', -] - -dependencies = [('ncurses', '5.9')] - -sanity_check_paths = { - 'files': ["bin/tcsh"], - 'dirs': [] -} - -moduleclass = 'tools' diff --git a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb index 2e710f4a1d969e76e45bef13b0f8d873bc793d76..5e7647f183055292f97422042fdc4a16a11f1662 100644 --- a/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/t/tcsh/tcsh-6.18.01-goolf-1.5.14.eb @@ -21,7 +21,7 @@ description = """Tcsh is an enhanced, but completely compatible version of the B processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.""" -toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchain = {'name': 'goolf', 'version': '1.5.14'} sources = [SOURCELOWER_TAR_GZ] source_urls = [ diff --git a/easybuild/easyconfigs/t/testpath/testpath-0.3-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/t/testpath/testpath-0.3-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..ea6de39dd21e83c86e056be0a92af182792a476d --- /dev/null +++ b/easybuild/easyconfigs/t/testpath/testpath-0.3-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,30 @@ +easyblock = 'PythonPackage' + +name = 'testpath' +version = '0.3' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://github.com/jupyter/testpath' +description = """Test utilities for code working with files and commands""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['https://pypi.python.org/packages/py2.py3/t/testpath/'] +sources = ['testpath-%(version)s-py2.py3-none-any.whl'] + +dependencies = [ + ('Python', '2.7.11'), +] +builddependencies = [ + ('pip', '8.0.2', versionsuffix), +] + +use_pip = True +unpack_sources = False + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages/testpath'], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/t/texinfo/texinfo-4.13a.eb b/easybuild/easyconfigs/t/texinfo/texinfo-4.13a.eb new file mode 100644 index 0000000000000000000000000000000000000000..1f3105220a9c5a73edd2dc9e5a13aa68b188a8b7 --- /dev/null +++ b/easybuild/easyconfigs/t/texinfo/texinfo-4.13a.eb @@ -0,0 +1,31 @@ +easyblock = 'ConfigureMake' + +name = 'texinfo' +version = '4.13a' + +homepage = 'https://www.gnu.org/software/texinfo/' +description = """Texinfo is the official documentation format of the GNU project.""" + +source_urls = [GNU_SOURCE] +sources = [SOURCELOWER_TAR_GZ] + +toolchain = {'name': 'dummy', 'version': ''} + +osdependencies = ['texlive'] + +preinstallopts = "make TEXMF=%(installdir)s/texmf install-tex && " + +# This will overwrite a users $TEXMFHOME so this module is best used as a build dependency +modextravars = {'TEXMFHOME': '%(installdir)s/texmf'} +modloadmsg = "\n\nWARNING: This texinfo module has (re)defined the value for the environment variable \\$TEXMFHOME.\n" +modloadmsg += "If you use a custom texmf directory (such as ~/texmf) you should copy files found in the\n" +modloadmsg += "new \\$TEXMFHOME to your custom directory and reset the value of \\$TEXMFHOME to point to that space:\n" +modloadmsg += "\tcp -r $TEXMFHOME/* /path/to/your/texmf\n" +modloadmsg += "\texport TEXMFHOME=/path/to/your/texmf\n\n" + +sanity_check_paths = { + 'files': ['bin/info', 'bin/makeinfo', 'bin/texi2pdf', 'texmf/tex/texinfo/texinfo.tex'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/t/texinfo/texinfo-5.2-GCC-4.8.2.eb b/easybuild/easyconfigs/t/texinfo/texinfo-5.2-GCC-4.8.2.eb index 7e2b9ee6aa1f505f71fa4453fb7d28f1788796c5..e8a270b38c02749e6baf9a09f86291dd844ea7b7 100644 --- a/easybuild/easyconfigs/t/texinfo/texinfo-5.2-GCC-4.8.2.eb +++ b/easybuild/easyconfigs/t/texinfo/texinfo-5.2-GCC-4.8.2.eb @@ -17,11 +17,11 @@ preinstallopts = "make TEXMF=%(installdir)s/texmf install-tex && " # This will overwrite a users $TEXMFHOME so this module is best used as a build dependency modextravars = {'TEXMFHOME': '%(installdir)s/texmf'} -modloadmsg = "\n\nWARNING: This texinfo module has (re)defined the value for the environment variable \\$TEXMFHOME.\n" -modloadmsg += "If you use a custom texmf directory (such as ~/texmf) you should copy files found in the\n" -modloadmsg += "new \\$TEXMFHOME to your custom directory and reset the value of \\$TEXMFHOME to point to that space:\n" -modloadmsg += "\tcp -r $TEXMFHOME/* /path/to/your/texmf\n" -modloadmsg += "\texport TEXMFHOME=/path/to/your/texmf\n\n" +modloadmsg = "\n\nWARNING: This texinfo module has (re)defined the value for the environment variable \\$TEXMFHOME.\n" +modloadmsg += "If you use a custom texmf directory (such as ~/texmf) you should copy files found in the\n" +modloadmsg += "new \\$TEXMFHOME to your custom directory and reset the value of \\$TEXMFHOME to point to that space:\n" +modloadmsg += "\tcp -r $TEXMFHOME/* /path/to/your/texmf\n" +modloadmsg += "\texport TEXMFHOME=/path/to/your/texmf\n\n" sanity_check_paths = { 'files': ['bin/info', 'bin/makeinfo', 'bin/pod2texi', 'bin/texi2pdf', 'texmf/tex/texinfo/texinfo.tex'], diff --git a/easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb b/easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb index cd1b05dd17ce9eb83283b5aafd9e9d337012f324..b34529fe922c37209f866e1007779dd376c0d659 100644 --- a/easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/t/tmux/tmux-1.9a-GCC-4.9.2.eb @@ -19,7 +19,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['bin/tmux'], + 'files': ['bin/tmux'], 'dirs': [] } diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb index 50fbec0e1c0343bf5c18546e675d4d62e77af209..a52aa694fc5d3a94b21c5de21669e9c3b9e44deb 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goalf-1.1.0-no-OFED.eb @@ -33,7 +33,7 @@ sanity_check_paths = { 'include/udunits2.h', 'include/udunits.h', 'lib/libudunits2.a', - 'lib/libudunits2.so', + 'lib/libudunits2.%s' % SHLIB_EXT, ], 'dirs': ['share'], } diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb index 46c29b08f1d18941351ab2f1233ca3b07c7108ea..72d80a88dd707be0846c79bda426158c3666e9bf 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-goolf-1.4.10.eb @@ -33,7 +33,7 @@ sanity_check_paths = { 'include/udunits2.h', 'include/udunits.h', 'lib/libudunits2.a', - 'lib/libudunits2.so', + 'lib/libudunits2.%s' % SHLIB_EXT, ], 'dirs': ['share'], } diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb index d95d2e2e5ff1bb928df13f5bf3d288668efa9682..b9d1c0a57407f0f92ab422ebbe4873e570e09e26 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-3.2.2.u3.eb @@ -33,7 +33,7 @@ sanity_check_paths = { 'include/udunits2.h', 'include/udunits.h', 'lib/libudunits2.a', - 'lib/libudunits2.so', + 'lib/libudunits2.%s' % SHLIB_EXT, ], 'dirs': ['share'], } diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb index 0b5eedcf683ea17643682f2c5e3d6d17ffe542c1..7a9b90a956361de34076f73ba3e6682799024a42 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.0.6.eb @@ -33,7 +33,7 @@ sanity_check_paths = { 'include/udunits2.h', 'include/udunits.h', 'lib/libudunits2.a', - 'lib/libudunits2.so', + 'lib/libudunits2.%s' % SHLIB_EXT, ], 'dirs': ['share'], } diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb index b3e41567be85e516e15e08e9d3b114f9c2b856cb..f166af224856a7a0fc7d74d96cd95cc7dd7ff09f 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-4.1.13.eb @@ -33,7 +33,7 @@ sanity_check_paths = { 'include/udunits2.h', 'include/udunits.h', 'lib/libudunits2.a', - 'lib/libudunits2.so', + 'lib/libudunits2.%s' % SHLIB_EXT, ], 'dirs': ['share'], } diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb index ac829b62ae7e0c8a2f9704ef646a1ecb4e2f4572..6769cda969032d32dfa09e419869846195d5a050 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.2.0.eb @@ -33,7 +33,7 @@ sanity_check_paths = { 'include/udunits2.h', 'include/udunits.h', 'lib/libudunits2.a', - 'lib/libudunits2.so', + 'lib/libudunits2.%s' % SHLIB_EXT, ], 'dirs': ['share'], } diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb index b0e1ae05f8417a54a83879a3b463e4cb8366ece6..13138db3b02a41b1abe082fa408b980361e3fa65 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.3.0.eb @@ -33,7 +33,7 @@ sanity_check_paths = { 'include/udunits2.h', 'include/udunits.h', 'lib/libudunits2.a', - 'lib/libudunits2.so', + 'lib/libudunits2.%s' % SHLIB_EXT, ], 'dirs': ['share'], } diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.4.0.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.4.0.eb index e3a2a31a1906e323dbe172c6ce5c285246425995..39dc1241a0bc16e2ae8c6ef9c5e78c254a1d040d 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-ictce-5.4.0.eb @@ -34,7 +34,7 @@ sanity_check_paths = { 'include/udunits2.h', 'include/udunits.h', 'lib/libudunits2.a', - 'lib/libudunits2.so', + 'lib/libudunits2.%s' % SHLIB_EXT, ], 'dirs': ['share'], } diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-intel-2014b.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-intel-2014b.eb index e9bf8e9075f196b4dea7024270eb604fdd3fd7bd..e773e384b2192dc1f1cb9637630a24b85e9ac034 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-intel-2014b.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-intel-2014b.eb @@ -32,7 +32,7 @@ sanity_check_paths = { 'include/udunits2.h', 'include/udunits.h', 'lib/libudunits2.a', - 'lib/libudunits2.so', + 'lib/libudunits2.%s' % SHLIB_EXT, ], 'dirs': ['share'], } diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb index bfcc6592efaa60c36ae7eb850ae1439e64d61ba2..193e10df496f413f72ab55aae80f4a629554b09e 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.1.24-iqacml-3.7.3.eb @@ -33,7 +33,7 @@ sanity_check_paths = { 'include/udunits2.h', 'include/udunits.h', 'lib/libudunits2.a', - 'lib/libudunits2.so', + 'lib/libudunits2.%s' % SHLIB_EXT, ], 'dirs': ['share'], } diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015a.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015a.eb index 54303b9dd93f9c781a905bb1394a9a5bde081bde..964a50f27f8e5527bd2f10768014d2771cdcda43 100644 --- a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015a.eb +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015a.eb @@ -28,8 +28,8 @@ source_urls = ['ftp://ftp.unidata.ucar.edu/pub/udunits'] dependencies = [('expat', '2.1.0')] sanity_check_paths = { - 'files': ['bin/udunits2', 'include/converter.h', 'include/udunits2.h', 'include/udunits.h', - 'lib/libudunits2.a', 'lib/libudunits2.so', ], + 'files': ['bin/udunits2', 'include/converter.h', 'include/udunits2.h', 'include/udunits.h', + 'lib/libudunits2.a', 'lib/libudunits2.%s' % SHLIB_EXT], 'dirs': ['share'], } diff --git a/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015b.eb b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..efdb4ae86f533759428bfd8dcc3a0d046bd46af7 --- /dev/null +++ b/easybuild/easyconfigs/u/UDUNITS/UDUNITS-2.2.19-intel-2015b.eb @@ -0,0 +1,38 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2013 University of Luxembourg, Ghent University +# Authors:: Fotis Georgatos , Kenneth Hoste (Ghent University) +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html +## + +easyblock = 'ConfigureMake' + +name = 'UDUNITS' +version = '2.2.19' + +homepage = 'http://www.unidata.ucar.edu/software/udunits/' +description = """UDUNITS supports conversion of unit specifications between formatted and binary forms, + arithmetic manipulation of units, and conversion of values between compatible scales of measurement.""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'opt': True, 'pic': True} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['ftp://ftp.unidata.ucar.edu/pub/udunits'] + +dependencies = [('expat', '2.1.0')] + +sanity_check_paths = { + 'files': ['bin/udunits2', 'include/converter.h', 'include/udunits2.h', 'include/udunits.h', + 'lib/libudunits2.a', 'lib/libudunits2.%s' % SHLIB_EXT], + 'dirs': ['share'], +} + +parallel = 1 + +moduleclass = 'phys' diff --git a/easybuild/easyconfigs/u/UFC/UFC-2.0.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/u/UFC/UFC-2.0.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb index d5b510117725a5a47ca6d6ca002729cb7cfda9eb..764f2be10bfd26c67373cdd9cb3ee853ae83d336 100644 --- a/easybuild/easyconfigs/u/UFC/UFC-2.0.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/u/UFC/UFC-2.0.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -17,11 +17,11 @@ pythonversion = '2.7.3' versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('Boost', '1.49.0', versionsuffix), - ('Instant', '1.0.0', versionsuffix), - ('SWIG', '2.0.4', versionsuffix), - ] + (python, pythonversion), + ('Boost', '1.49.0', versionsuffix), + ('Instant', '1.0.0', versionsuffix), + ('SWIG', '2.0.4', versionsuffix), +] builddependencies = [('CMake', '2.8.4')] diff --git a/easybuild/easyconfigs/u/UFC/UFC-2.0.5-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/u/UFC/UFC-2.0.5-goolf-1.4.10-Python-2.7.3.eb index 10b9d9e61d56708a07e2ea466abe162a2afea1ec..47c5ff4491a1c14063ea6868561b80e59b44cf71 100644 --- a/easybuild/easyconfigs/u/UFC/UFC-2.0.5-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/u/UFC/UFC-2.0.5-goolf-1.4.10-Python-2.7.3.eb @@ -17,11 +17,11 @@ pythonversion = '2.7.3' versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('Boost', '1.49.0', versionsuffix), - ('Instant', '1.0.0', versionsuffix), - ('SWIG', '2.0.4', versionsuffix), - ] + (python, pythonversion), + ('Boost', '1.49.0', versionsuffix), + ('Instant', '1.0.0', versionsuffix), + ('SWIG', '2.0.4', versionsuffix), +] builddependencies = [('CMake', '2.8.4')] diff --git a/easybuild/easyconfigs/u/UFC/UFC-2.0.5-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/u/UFC/UFC-2.0.5-ictce-4.0.6-Python-2.7.3.eb index ea960b2f02ef57e1876b8d04980d4fd1e6fab2c4..0a5f724b73d72ea53d6d2d44954588866f9c6b4b 100644 --- a/easybuild/easyconfigs/u/UFC/UFC-2.0.5-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/u/UFC/UFC-2.0.5-ictce-4.0.6-Python-2.7.3.eb @@ -17,11 +17,11 @@ pythonversion = '2.7.3' versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('Boost', '1.49.0', versionsuffix), - ('Instant', '1.0.0', versionsuffix), - ('SWIG', '2.0.4', versionsuffix), - ] + (python, pythonversion), + ('Boost', '1.49.0', versionsuffix), + ('Instant', '1.0.0', versionsuffix), + ('SWIG', '2.0.4', versionsuffix), +] builddependencies = [('CMake', '2.8.4')] diff --git a/easybuild/easyconfigs/u/UFC/UFC-2.0.5-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/u/UFC/UFC-2.0.5-ictce-5.3.0-Python-2.7.3.eb index 2be9be92daec46b562e40ea0f7314ae91303a977..4998756c2ea139ef87e1f0d1c65e636cc0206f31 100644 --- a/easybuild/easyconfigs/u/UFC/UFC-2.0.5-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/u/UFC/UFC-2.0.5-ictce-5.3.0-Python-2.7.3.eb @@ -18,11 +18,11 @@ pythonversion = '2.7.3' versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [ - (python, pythonversion), - ('Boost', '1.49.0', versionsuffix), - ('Instant', '1.0.0', versionsuffix), - ('SWIG', '2.0.4', versionsuffix), - ] + (python, pythonversion), + ('Boost', '1.49.0', versionsuffix), + ('Instant', '1.0.0', versionsuffix), + ('SWIG', '2.0.4', versionsuffix), +] builddependencies = [('CMake', '2.8.4')] diff --git a/easybuild/easyconfigs/u/UFL/UFL-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/u/UFL/UFL-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 9bd8667afb16fa4e8840ca6d97d75dded95c7d46..806978a0449136660171debca89fc9499990e772 100644 --- a/easybuild/easyconfigs/u/UFL/UFL-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/u/UFL/UFL-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -23,8 +23,8 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [(python, pythonversion)] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ["form2ufl", "ufl2py", "ufl-analyse", "ufl-convert", "ufl-version"]], - 'dirs': ['lib/python%s/site-packages/ufl' % pythonshortversion] - } + 'files': ['bin/%s' % x for x in ["form2ufl", "ufl2py", "ufl-analyse", "ufl-convert", "ufl-version"]], + 'dirs': ['lib/python%s/site-packages/ufl' % pythonshortversion] +} moduleclass = 'cae' diff --git a/easybuild/easyconfigs/u/UFL/UFL-1.0.0-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/u/UFL/UFL-1.0.0-goolf-1.4.10-Python-2.7.3.eb index 4177e70f06d0a11f6c36520f90b16acc8099954b..44bbfb4a0628f7bb69af1e4643049c047ca68e4c 100644 --- a/easybuild/easyconfigs/u/UFL/UFL-1.0.0-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/u/UFL/UFL-1.0.0-goolf-1.4.10-Python-2.7.3.eb @@ -23,8 +23,8 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [(python, pythonversion)] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ["form2ufl", "ufl2py", "ufl-analyse", "ufl-convert", "ufl-version"]], - 'dirs': ['lib/python%s/site-packages/ufl' % pythonshortversion] - } + 'files': ['bin/%s' % x for x in ["form2ufl", "ufl2py", "ufl-analyse", "ufl-convert", "ufl-version"]], + 'dirs': ['lib/python%s/site-packages/ufl' % pythonshortversion] +} moduleclass = 'cae' diff --git a/easybuild/easyconfigs/u/UFL/UFL-1.0.0-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/u/UFL/UFL-1.0.0-ictce-4.0.6-Python-2.7.3.eb index 55688fcbe69462ff2d8e2fc0fdba3c48c9e3f59a..0d8f8edb49e4fea37084d36aa51ac989b6b322a5 100644 --- a/easybuild/easyconfigs/u/UFL/UFL-1.0.0-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/u/UFL/UFL-1.0.0-ictce-4.0.6-Python-2.7.3.eb @@ -23,8 +23,8 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [(python, pythonversion)] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ["form2ufl", "ufl2py", "ufl-analyse", "ufl-convert", "ufl-version"]], - 'dirs': ['lib/python%s/site-packages/ufl' % pythonshortversion] - } + 'files': ['bin/%s' % x for x in ["form2ufl", "ufl2py", "ufl-analyse", "ufl-convert", "ufl-version"]], + 'dirs': ['lib/python%s/site-packages/ufl' % pythonshortversion] +} moduleclass = 'cae' diff --git a/easybuild/easyconfigs/u/UFL/UFL-1.0.0-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/u/UFL/UFL-1.0.0-ictce-5.3.0-Python-2.7.3.eb index fcb84880d336b0d6da6d066c17a58ee99376e6e8..30a212235a062a7378a7d4a0bac5d575b6cdc233 100644 --- a/easybuild/easyconfigs/u/UFL/UFL-1.0.0-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/u/UFL/UFL-1.0.0-ictce-5.3.0-Python-2.7.3.eb @@ -24,8 +24,8 @@ versionsuffix = "-%s-%s" % (python, pythonversion) dependencies = [(python, pythonversion)] sanity_check_paths = { - 'files': ['bin/%s' % x for x in ["form2ufl", "ufl2py", "ufl-analyse", "ufl-convert", "ufl-version"]], - 'dirs': ['lib/python%s/site-packages/ufl' % pythonshortversion] - } + 'files': ['bin/%s' % x for x in ["form2ufl", "ufl2py", "ufl-analyse", "ufl-convert", "ufl-version"]], + 'dirs': ['lib/python%s/site-packages/ufl' % pythonshortversion] +} moduleclass = 'cae' diff --git a/easybuild/easyconfigs/u/USEARCH/USEARCH-5.2.236-i86linux32.eb b/easybuild/easyconfigs/u/USEARCH/USEARCH-5.2.236-i86linux32.eb new file mode 100644 index 0000000000000000000000000000000000000000..961153d9b47f8f658584e76fa77486b4f3d865f3 --- /dev/null +++ b/easybuild/easyconfigs/u/USEARCH/USEARCH-5.2.236-i86linux32.eb @@ -0,0 +1,29 @@ +easyblock = 'Binary' + +name = 'USEARCH' +version = '5.2.236' +versionsuffix = '-i86linux32' + +homepage = 'http://www.drive5.com/usearch/index.html' +description = """USEARCH is a unique sequence analysis tool which offers search and clustering algorithms that are + often orders of magnitude faster than BLAST.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download via http://www.drive5.com/usearch/download.html +usearch_bin = 'usearch%s_%s' % (version, versionsuffix[1:]) +sources = [usearch_bin] + +install_cmd = "mkdir -p %%(installdir)s/bin && mv %s %%(installdir)s/bin/%%(namelower)s && " % usearch_bin +install_cmd += "chmod a+rx %(installdir)s/bin/%(namelower)s" + +modloadmsg = """USEARCH (32-bit) is licensed software but + can be used for free by individuals when registered. A 64-bit version is + also available. For more information see http://www.drive5.com/usearch .""" + +sanity_check_paths = { + 'files': ['bin/%(namelower)s'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/u/USEARCH/USEARCH-6.1.544-i86linux32.eb b/easybuild/easyconfigs/u/USEARCH/USEARCH-6.1.544-i86linux32.eb new file mode 100644 index 0000000000000000000000000000000000000000..07e180dab52d731d0fcd579764c90d78627106fb --- /dev/null +++ b/easybuild/easyconfigs/u/USEARCH/USEARCH-6.1.544-i86linux32.eb @@ -0,0 +1,29 @@ +easyblock = 'Binary' + +name = 'USEARCH' +version = '6.1.544' +versionsuffix = '-i86linux32' + +homepage = 'http://www.drive5.com/usearch/index.html' +description = """USEARCH is a unique sequence analysis tool which offers search and clustering algorithms that are + often orders of magnitude faster than BLAST.""" + +toolchain = {'name': 'dummy', 'version': 'dummy'} + +# download via http://www.drive5.com/usearch/download.html +usearch_bin = 'usearch%s_%s' % (version, versionsuffix[1:]) +sources = [usearch_bin] + +install_cmd = "mkdir -p %%(installdir)s/bin && mv %s %%(installdir)s/bin/%%(namelower)s && " % usearch_bin +install_cmd += "chmod a+rx %(installdir)s/bin/%(namelower)s" + +modloadmsg = """USEARCH (32-bit) is licensed software but + can be used for free by individuals when registered. A 64-bit version is + also available. For more information see http://www.drive5.com/usearch .""" + +sanity_check_paths = { + 'files': ['bin/%(namelower)s'], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goalf-1.1.0-no-OFED.eb index 5c2f9f5f7c656fdc5edbdff371c4dfeda1dda0f4..5e621327c3c2909b1cb03fd38aaf152a5492eb38 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goalf-1.1.0-no-OFED.eb @@ -22,7 +22,7 @@ configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " dependencies = [('ncurses', '5.9')] sanity_check_paths = { - 'files': ['lib/lib%s.a' % x for x in ['blkid' , 'mount', 'uuid']], + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], 'dirs': ['include', 'bin', 'share', 'sbin'], } diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb index 80fbeb975f9b71233bf26150c7504d97215a57e0..75238f212442b437b5ba539363666f1017118271 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-goolf-1.4.10.eb @@ -22,7 +22,7 @@ configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " dependencies = [('ncurses', '5.9')] sanity_check_paths = { - 'files': ['lib/lib%s.a' % x for x in ['blkid' , 'mount', 'uuid']], + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], 'dirs': ['include', 'bin', 'share', 'sbin'], } diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-4.1.13.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-4.1.13.eb index f9d273f24a3c4abe473c32a8ef575b9ef49f6e45..dadb7261d1d2a2a7dcb9df61927bcb1b49e500a1 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-4.1.13.eb @@ -22,7 +22,7 @@ configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " dependencies = [('ncurses', '5.9')] sanity_check_paths = { - 'files': ['lib/lib%s.a' % x for x in ['blkid' , 'mount', 'uuid']], + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], 'dirs': ['include', 'bin', 'share', 'sbin'], } diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb index aa973159c71f0e28e037c21704c614ff2b90ed8e..ed49a78c1e658773b6985c97c7e0f58f57a0bdc4 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.3.0.eb @@ -22,7 +22,7 @@ configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " dependencies = [('ncurses', '5.9')] sanity_check_paths = { - 'files': ['lib/lib%s.a' % x for x in ['blkid' , 'mount', 'uuid']], + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], 'dirs': ['include', 'bin', 'share', 'sbin'], } diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb index a3c15983570e392ef35ae30f35cfa60983df38ed..43d67f412c11c7b27de94702dc9aec70e88a2b9b 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-ictce-5.5.0.eb @@ -22,7 +22,7 @@ configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " dependencies = [('ncurses', '5.9')] sanity_check_paths = { - 'files': ['lib/lib%s.a' % x for x in ['blkid' , 'mount', 'uuid']], + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], 'dirs': ['include', 'bin', 'share', 'sbin'], } diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb index bfe2f53f72891ccad4016a663bdc2f75debaf2d2..df0a957cf2c2e0f394d16d086b2f018c6f080154 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.22.2-intel-2014b.eb @@ -8,7 +8,7 @@ description = """Set of Linux utilities""" toolchain = {'name': 'intel', 'version': '2014b'} -source_urls = ['%s/v%s'%(homepage,'.'.join(version.split('.')[0:2]) )] +source_urls = ['%s/v%s' % (homepage, '.'.join(version.split('.')[0:2]))] sources = [SOURCELOWER_TAR_GZ] # disable account related utilities (they need OS dependant pam-devel files) @@ -22,7 +22,7 @@ configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " dependencies = [('ncurses', '5.9')] sanity_check_paths = { - 'files': ['lib/lib%s.a' % x for x in ['blkid' , 'mount', 'uuid']], + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], 'dirs': ['include', 'bin', 'share', 'sbin'], } diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb index c583476f42fb58eeaff36dedf1e9621617fc64fb..be21e2d15b3851761c784c062ebe518c57d45aa4 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.24-ictce-5.5.0.eb @@ -22,7 +22,7 @@ configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " dependencies = [('ncurses', '5.9')] sanity_check_paths = { - 'files': ['lib/lib%s.a' % x for x in ['blkid' , 'mount', 'uuid']], + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], 'dirs': ['include', 'bin', 'share', 'sbin'], } diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb index ba35f12734a8637ed28e06e028e5db90bdbdba69..f71360b39b222539cb84c4460133c356f4dd16a2 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.24.1-ictce-5.5.0.eb @@ -24,7 +24,7 @@ configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/complet dependencies = [('ncurses', '5.9')] sanity_check_paths = { - 'files': ['lib/lib%s.a' % x for x in ['blkid' , 'mount', 'uuid']], + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], 'dirs': ['include', 'bin', 'share', 'sbin'], } diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-foss-2015a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-foss-2015a.eb index dc874b1a62fe2986c85058a879b4b7232dfc0a43..61d17ba4f2069161356f782f2ae88f898eee4884 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-foss-2015a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-foss-2015a.eb @@ -26,7 +26,7 @@ configopts += "--without-python " dependencies = [('ncurses', '5.9')] sanity_check_paths = { - 'files': ['lib/lib%s.a' % x for x in ['blkid' , 'mount', 'uuid']], + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], 'dirs': ['include', 'bin', 'share', 'sbin'], } diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb index b64073541184414e3a5d71d248f640e9866c3860..c339492021d626a75a588991b2bf8e882885fae1 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.1-intel-2015a.eb @@ -26,7 +26,7 @@ configopts += "--without-python " dependencies = [('ncurses', '5.9')] sanity_check_paths = { - 'files': ['lib/lib%s.a' % x for x in ['blkid' , 'mount', 'uuid']], + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], 'dirs': ['include', 'bin', 'share', 'sbin'], } diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.2-intel-2015a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.2-intel-2015a.eb index 0d1eb341d5bdce6e4d7cdd8acbc3aa9d1191c604..dae5a4f2971e6771e37e620a881929b47cd40fe7 100644 --- a/easybuild/easyconfigs/u/util-linux/util-linux-2.26.2-intel-2015a.eb +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.26.2-intel-2015a.eb @@ -26,7 +26,7 @@ configopts += "--without-python " dependencies = [('ncurses', '5.9')] sanity_check_paths = { - 'files': ['lib/lib%s.a' % x for x in ['blkid' , 'mount', 'uuid']], + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], 'dirs': ['include', 'bin', 'share', 'sbin'], } diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2015a.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..50b1fff058cd9d175a989fe187f55c6edc64ac39 --- /dev/null +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-foss-2015a.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'util-linux' +version = '2.27.1' + +homepage = 'http://www.kernel.org/pub/linux/utils/util-linux' +description = """Set of Linux utilities""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['%s/v%%(version_major_minor)s' % homepage] +sources = [SOURCELOWER_TAR_GZ] + +# disable account related utilities (they need OS dependant pam-devel files) +# disable wall and friends (requires group changing permissions for install user) +# install systemd service files in install dir +# install bash completion files in install dir +configopts = "--disable-chfn-chsh --disable-login --disable-su " +configopts += "--disable-wall --disable-use-tty-group " +configopts += "--disable-makeinstall-chown --disable-makeinstall-setuid " +configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " +configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/completions' " +# disable building Python bindings (since we don't include Python as a dep) +configopts += "--without-python " + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], + 'dirs': ['include', 'bin', 'share', 'sbin'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2015b.eb b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..98645a6d82885a8164a793ee1f3f0442ed9f6f8b --- /dev/null +++ b/easybuild/easyconfigs/u/util-linux/util-linux-2.27.1-intel-2015b.eb @@ -0,0 +1,33 @@ +easyblock = 'ConfigureMake' + +name = 'util-linux' +version = '2.27.1' + +homepage = 'http://www.kernel.org/pub/linux/utils/util-linux' +description = """Set of Linux utilities""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['%s/v%%(version_major_minor)s' % homepage] +sources = [SOURCELOWER_TAR_GZ] + +# disable account related utilities (they need OS dependant pam-devel files) +# disable wall and friends (requires group changing permissions for install user) +# install systemd service files in install dir +# install bash completion files in install dir +configopts = "--disable-chfn-chsh --disable-login --disable-su " +configopts += "--disable-wall --disable-use-tty-group " +configopts += "--disable-makeinstall-chown --disable-makeinstall-setuid " +configopts += "--with-systemdsystemunitdir='${prefix}/systemd' " +configopts += "--with-bashcompletiondir='${prefix}/share/bash-completion/completions' " +# disable building Python bindings (since we don't include Python as a dep) +configopts += "--without-python " + +dependencies = [('ncurses', '5.9')] + +sanity_check_paths = { + 'files': ['lib/lib%s.a' % x for x in ['blkid', 'mount', 'uuid']], + 'dirs': ['include', 'bin', 'share', 'sbin'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2015b-Perl-5.20.3.eb b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2015b-Perl-5.20.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..926d8c87071f5cf14851d99bad06f144b5d6b1b3 --- /dev/null +++ b/easybuild/easyconfigs/v/VCFtools/VCFtools-0.1.14-foss-2015b-Perl-5.20.3.eb @@ -0,0 +1,42 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel +# Author: Adam Huffman +# adam.huffman@crick.ac.uk +# The Francis Crick Institute + +easyblock = 'ConfigureMake' + +name = 'VCFtools' +version = '0.1.14' + +homepage = "https://vcftools.github.io" +description = """The aim of VCFtools is to provide + easily accessible methods for working with complex + genetic variation data in the form of VCF files.""" + +toolchain = {'name': 'foss', 'version': '2015b'} +toolchainopts = {'optarch': True} + +source_urls = ['https://github.com/%(namelower)s/%(namelower)s/releases/download/v%(version)s/'] +sources = ['%(namelower)s-%(version)s.tar.gz'] + +perl = 'Perl' +perlver = '5.20.3' +versionsuffix = '-%s-%s' % (perl, perlver) + +dependencies = [ + (perl, perlver), +] + +files_to_copy = ["bin", "lib", "examples", (["bin/man1"], 'man')] + +modextrapaths = {'PERL5LIB': 'lib/perl5/site_perl'} + +sanity_check_paths = { + 'files': ['bin/%s' % x for x in ['vcftools', 'vcf-sort', 'vcf-stats']], + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/VSC-tools/VSC-tools-0.1.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/v/VSC-tools/VSC-tools-0.1.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 2f4453a35287981d3d66501f041c36552be4ea4c..31f3ed4ec2355b08e183a7b0f5f0a509d5fdcb2b 100644 --- a/easybuild/easyconfigs/v/VSC-tools/VSC-tools-0.1.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/v/VSC-tools/VSC-tools-0.1.2-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -7,9 +7,9 @@ description = """VSC-tools is a set of Python libraries and scripts that are com toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sources = [ - 'vsc-base-0.95.tar.gz', - 'vsc-mympirun-3.0.5.tar.gz', - ] + 'vsc-base-0.95.tar.gz', + 'vsc-mympirun-3.0.5.tar.gz', +] python = 'Python' pyver = '2.7.3' diff --git a/easybuild/easyconfigs/v/VSC-tools/VSC-tools-0.1.2-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/v/VSC-tools/VSC-tools-0.1.2-ictce-4.1.13-Python-2.7.3.eb index efba5e0d07881ed36823b269d1db1ee33ac82f8f..cbae339789c98b4284f487de09d2da1f87ae2595 100644 --- a/easybuild/easyconfigs/v/VSC-tools/VSC-tools-0.1.2-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/v/VSC-tools/VSC-tools-0.1.2-ictce-4.1.13-Python-2.7.3.eb @@ -7,9 +7,9 @@ description = """VSC-tools is a set of Python libraries and scripts that are com toolchain = {'name': 'ictce', 'version': '4.1.13'} sources = [ - 'vsc-base-0.95.tar.gz', - 'vsc-mympirun-3.0.5.tar.gz', - ] + 'vsc-base-0.95.tar.gz', + 'vsc-mympirun-3.0.5.tar.gz', +] python = 'Python' pyver = '2.7.3' diff --git a/easybuild/easyconfigs/v/VSC-tools/VSC-tools-0.1.2-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/v/VSC-tools/VSC-tools-0.1.2-ictce-5.3.0-Python-2.7.3.eb index 36fb089f672140ac240e14cfd10d79251a589714..4142cd2fe34204f27889fe87bb204e7c15dc5bd0 100644 --- a/easybuild/easyconfigs/v/VSC-tools/VSC-tools-0.1.2-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/v/VSC-tools/VSC-tools-0.1.2-ictce-5.3.0-Python-2.7.3.eb @@ -8,9 +8,9 @@ description = """VSC-tools is a set of Python libraries and scripts that are com toolchain = {'name': 'ictce', 'version': '5.3.0'} sources = [ - 'vsc-base-0.95.tar.gz', - 'vsc-mympirun-3.0.5.tar.gz', - ] + 'vsc-base-0.95.tar.gz', + 'vsc-mympirun-3.0.5.tar.gz', +] python = 'Python' pyver = '2.7.3' diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb index 8f65a96e35afb72c4ae63ccf85719030e6b1a549..d0373056bbef607f32a7750eb66314cf03559756 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-goalf-1.1.0-no-OFED.eb @@ -36,8 +36,8 @@ toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} builddependencies = [('CMake', '2.8.4')] sanity_check_paths = { - 'files': ['bin/vtkEncodeString'], - 'dirs': ['lib/vtk-%s' % vermajor, 'include/vtk-%s' % vermajor] - } + 'files': ['bin/vtkEncodeString'], + 'dirs': ['lib/vtk-%s' % vermajor, 'include/vtk-%s' % vermajor] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb index 286f9e74f0b147419d72dbca8d112534e4e654e8..2a354f444a06175078d44db5c0c8b9a580611df8 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-4.0.6.eb @@ -36,8 +36,8 @@ toolchain = {'version': '4.0.6', 'name': 'ictce'} builddependencies = [('CMake', '2.8.4')] sanity_check_paths = { - 'files': ['bin/vtkEncodeString'], - 'dirs': ['lib/vtk-%s' % vermajor, 'include/vtk-%s' % vermajor] - } + 'files': ['bin/vtkEncodeString'], + 'dirs': ['lib/vtk-%s' % vermajor, 'include/vtk-%s' % vermajor] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb index 3d9b76d1f124986cc5547ecf3a8fc9a2f7984f2f..45d8b25c17eeabd4d197b287083f91a63d02fd68 100644 --- a/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/VTK/VTK-5.10.1-ictce-5.3.0.eb @@ -36,8 +36,8 @@ toolchain = {'name': 'ictce', 'version': '5.3.0'} builddependencies = [('CMake', '2.8.4')] sanity_check_paths = { - 'files': ['bin/vtkEncodeString'], - 'dirs': ['lib/vtk-%s' % vermajor, 'include/vtk-%s' % vermajor] - } + 'files': ['bin/vtkEncodeString'], + 'dirs': ['lib/vtk-%s' % vermajor, 'include/vtk-%s' % vermajor] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..4be27d99f6731ac6cfd6f258996f9b8847876739 --- /dev/null +++ b/easybuild/easyconfigs/v/VTK/VTK-6.3.0-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,64 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-97.html +## + +easyblock = 'CMakeMake' + +name = 'VTK' +version = '6.3.0' + +homepage = 'http://www.vtk.org' +description = """The Visualization Toolkit (VTK) is an open-source, freely available software system for + 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several + interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization + algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques + such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://www.vtk.org/files/release/%(version_major_minor)s'] +sources = [ + SOURCE_TAR_GZ, + '%(name)sData-%(version)s.tar.gz', +] + +builddependencies = [('CMake', '3.4.1')] + +pyver = '2.7.11' +pyshortver = '.'.join(pyver.split('.')[:2]) +versionsuffix = '-Python-%s' % pyver + +mesaver = '11.0.8' +dependencies = [ + ('Python', pyver), + ('Mesa', mesaver, versionsuffix), + ('libGLU', '9.0.0', '-Mesa-%s' % mesaver), +] + +configopts = "-DOPENGL_glu_LIBRARY=$EBROOTLIBGLU/lib/libGLU.%s " % SHLIB_EXT +configopts += "-DOPENGL_gl_LIBRARY=$EBROOTMESA/lib/libGL.%s " % SHLIB_EXT +configopts += "-DOPENGL_INCLUDE_DIR=$EBROOTMESA/include -DVTK_WRAP_PYTHON=ON " +configopts += "-DPYTHON_LIBRARY=$EBROOTPYTHON/lib/libpython%s.%s " % (pyshortver, SHLIB_EXT) +configopts += " -DPYTHON_INCLUDE_DIR=$EBROOTPYTHON/include/python%s " % pyshortver +preinstallopts = "mkdir -p %(installdir)s/lib/python2.7/site-packages/ && " +preinstallopts += "export PYTHONPATH=%%(installdir)s/lib/python%s/site-packages:$PYTHONPATH && " % pyshortver + +modextrapaths = {'PYTHONPATH': ['lib/python%s/site-packages' % pyshortver]} + +sanity_check_paths = { + 'files': ['bin/vtk%s-%%(version_major_minor)s' % x for x in ['EncodeString', 'HashSource', + 'mkg3states', 'ParseOGLExt']], + 'dirs': ['lib/python%s/site-packages/' % pyshortver, 'include/vtk-%(version_major_minor)s'], +} + +sanity_check_commands = [('python', "-c 'import %(namelower)s'")] + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1-demo.eb b/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1-demo.eb index 44f692903f0e41917736d8694c88fc073ec3a934..85c8901493df8ce7a7cf21daa9e00e033a79000f 100644 --- a/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1-demo.eb +++ b/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1-demo.eb @@ -30,7 +30,8 @@ sources = ['vampir-%s%s-%s-setup.bin' % (version, versionsuffix, variant)] # Adjust this variable to point to the location of your Vampir license file license_file = '/example/licenses/path/vampir.license' -install_cmd = "./" + sources[0] + " --silent --instdir=%(installdir)s --no-icon --no-menu-items --no-trace-file-association" +install_cmd = "./" + sources[0] + " --silent --instdir=%(installdir)s " +install_cmd += "--no-icon --no-menu-items --no-trace-file-association" sanity_check_paths = { 'files': ["bin/vampir", "doc/vampir-manual.pdf"], diff --git a/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1.eb b/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1.eb index 5596a89f02442f10f19bf1942e7d6af6aab59965..a25a9d20e8c19c28641fa3d25aa6b487b931cd74 100644 --- a/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1.eb +++ b/easybuild/easyconfigs/v/Vampir/Vampir-8.4.1.eb @@ -33,7 +33,8 @@ checksums = [ # Adjust this variable to point to the location of your Vampir license file license_file = '/example/licenses/path/vampir.license' -install_cmd = "./" + sources[0] + " --silent --instdir=%(installdir)s --no-icon --no-menu-items --no-trace-file-association" +install_cmd = "./" + sources[0] + " --silent --instdir=%(installdir)s " +install_cmd += "--no-icon --no-menu-items --no-trace-file-association" sanity_check_paths = { 'files': ["bin/vampir", "doc/vampir-manual.pdf"], diff --git a/easybuild/easyconfigs/v/VampirServer/VampirServer-8.4.1-gompi-2015a.eb b/easybuild/easyconfigs/v/VampirServer/VampirServer-8.4.1-gompi-2015a.eb index 5b068e3cf704aa9f792ebf374f73eb95d57caa6c..6a972993654bc5fd14fdd85c1e983e22a890eb32 100644 --- a/easybuild/easyconfigs/v/VampirServer/VampirServer-8.4.1-gompi-2015a.eb +++ b/easybuild/easyconfigs/v/VampirServer/VampirServer-8.4.1-gompi-2015a.eb @@ -34,10 +34,11 @@ checksums = [ # Adjust this variable to point to the location of your Vampir license file license_file = '/example/licenses/path/vampir.license' -install_cmd = "./" + sources[0] + " --silent --instdir=%(installdir)s && %(installdir)s/bin/vampirserver config --silent" +install_cmd = "./" + sources[0] + " --silent --instdir=%(installdir)s && " +install_cmd += "%(installdir)s/bin/vampirserver config --silent" sanity_check_paths = { - 'files': ["bin/vampirserver", "doc/vampirserver-manual.pdf", "lib/vampirserver-driver.so"], + 'files': ["bin/vampirserver", "doc/vampirserver-manual.pdf", "lib/vampirserver-driver.%s" % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/v/VarScan/VarScan-2.4.1-Java-1.7.0_80.eb b/easybuild/easyconfigs/v/VarScan/VarScan-2.4.1-Java-1.7.0_80.eb new file mode 100644 index 0000000000000000000000000000000000000000..36d97df0906c903783dfe484c60e621e7b4baedc --- /dev/null +++ b/easybuild/easyconfigs/v/VarScan/VarScan-2.4.1-Java-1.7.0_80.eb @@ -0,0 +1,29 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Adam Huffman, based on initial work by Jordi Blasco +# The Francis Crick Institute + +easyblock = 'JAR' + +name = 'VarScan' +version = '2.4.1' + +homepage = 'https://github.com/dkoboldt/varscan' +description = """Variant calling and somatic mutation/CNV detection for next-generation sequencing data""" + +toolchain = {'name': 'dummy', 'version': ''} + +sources = ['%(name)s.v%(version)s.jar'] +source_urls = ['https://github.com/dkoboldt/varscan/releases/download/v%(version)s'] + +java = 'Java' +javaver = '1.7.0_80' +versionsuffix = '-%s-%s' % (java, javaver) + +dependencies = [(java, javaver)] + +sanity_check_paths = { + 'files': sources, + 'dirs': [], +} + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb index 9c3573c3bcf6275700ce280942843be11520ea49..7c27a7683f714a47d948e0e9a92200d3492c2d22 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_31.eb @@ -23,4 +23,6 @@ source_urls = ['http://www.ebi.ac.uk/~zerbino/%(namelower)s'] # by default MAXKMERLENGTH=31 but defined here to keep all the easyconfigs homogeneous buildopts = "OPENMP=1 MAXKMERLENGTH=%s" % versionsuffix.split('_')[1] +postinstallcmds = ["cd contrib/MetaVelvet-1.* && make && cd ../../ && cp -a contrib %(installdir)s/"] + moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb index 3556eea248ec9b27f0cdf1472db0b57533f54099..8457ee49034b0b489d2f8a2930debc46d7f0519f 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_57.eb @@ -22,4 +22,6 @@ source_urls = ['http://www.ebi.ac.uk/~zerbino/%(namelower)s'] buildopts = "OPENMP=1 MAXKMERLENGTH=%s" % versionsuffix.split('_')[1] +postinstallcmds = ["cd contrib/MetaVelvet-1.* && make && cd ../../ && cp -a contrib %(installdir)s/"] + moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb index 56dd2ed0943b4affc4142c2232e09d40986e51d6..ad56fb1790ddd000066e37dff05367672dc304a4 100644 --- a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-goolf-1.4.10-mt-kmer_63.eb @@ -22,4 +22,6 @@ source_urls = ['http://www.ebi.ac.uk/~zerbino/%(namelower)s'] buildopts = "OPENMP=1 MAXKMERLENGTH=%s" % versionsuffix.split('_')[1] +postinstallcmds = ["cd contrib/MetaVelvet-1.* && make && cd ../../ && cp -a contrib %(installdir)s/"] + moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100-Perl-5.20.3.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100-Perl-5.20.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..d05f4f9c7ac2a53b2d999f89d699c1621d2c6160 --- /dev/null +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_100-Perl-5.20.3.eb @@ -0,0 +1,39 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, 2012-2013 The Cyprus Institute +# Authors:: Cedric Laczny , Fotis Georgatos , +# Thekla Loizou , Andreas Panteli +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'Velvet' +version = '1.2.10' + +homepage = 'http://www.ebi.ac.uk/~zerbino/velvet/' +description = """Sequence assembler for very short reads""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'optarch': True, 'pic': True, 'openmp': True} + +sources = ['%(namelower)s_%(version)s.tgz'] +source_urls = ['http://www.ebi.ac.uk/~zerbino/%(namelower)s'] + +perlver = '5.20.3' +kmer = '100' +versionsuffix = '-mt-kmer_%s-Perl-%%(perlver)s' % kmer + +dependencies = [ + ('Perl', perlver), + ('BioPerl', '1.6.923', '-Perl-%(perlver)s'), +] + +buildopts = "OPENMP=1 MAXKMERLENGTH=%s" % kmer + +postinstallcmds = ["cd contrib/MetaVelvet-1.* && make && cd ../../ && cp -a contrib %(installdir)s/"] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31-Perl-5.20.3.eb b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31-Perl-5.20.3.eb new file mode 100644 index 0000000000000000000000000000000000000000..fe2df81ad07432b1fec122de1075586f08392b52 --- /dev/null +++ b/easybuild/easyconfigs/v/Velvet/Velvet-1.2.10-intel-2015b-mt-kmer_31-Perl-5.20.3.eb @@ -0,0 +1,41 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA, 2012-2013 The Cyprus Institute +# Authors:: Cedric Laczny , Fotis Georgatos , +# Thekla Loizou , Andreas Panteli +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html +## + +name = 'Velvet' +version = '1.2.10' + +homepage = 'http://www.ebi.ac.uk/~zerbino/velvet/' +description = """Sequence assembler for very short reads""" + +toolchain = {'name': 'intel', 'version': '2015b'} +toolchainopts = {'optarch': True, 'pic': True, 'openmp': True} + +sources = ['%(namelower)s_%(version)s.tgz'] +source_urls = ['http://www.ebi.ac.uk/~zerbino/%(namelower)s'] + +perl = 'Perl' +perlver = '5.20.3' +kmer = '31' +versionsuffix = '-mt-kmer_%s-Perl-%%(perlver)s' % kmer + +dependencies = [ + ('Perl', perlver), + ('BioPerl', '1.6.923', '-Perl-%(perlver)s'), +] + +# by default MAXKMERLENGTH=31 but defined here to keep all the easyconfigs homogeneous +buildopts = "OPENMP=1 MAXKMERLENGTH=%s" % kmer + +postinstallcmds = ["cd contrib/MetaVelvet-1.* && make && cd ../../ && cp -a contrib %(installdir)s/"] + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb index 3f61b9470551c79e90090e73adcfbd5695ebe141..740784c81214232502ddf3c6c8a632d5bd4be81c 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goalf-1.1.0-no-OFED.eb @@ -32,13 +32,13 @@ configopts = '--without-perl' #preconfigopts = 'PERLPREFIX="/path/where/the/perl/module/shoud/go"' sanity_check_paths = { - 'files': ['bin/RNA%s' % x for x in ['fold', 'eval', 'heat', 'pdist', 'distance', - 'inverse', 'plot', 'subopt', 'Lfold', 'cofold', - 'paln', 'duplex', 'alifold', 'plfold', 'up', - 'aliduplex', 'Lalifold', '2Dfold', 'parconv', - 'PKplex', 'plex', 'snoop', 'forester']] + - ['bin/Kinfold'], - 'dirs': [] - } + 'files': ['bin/RNA%s' % x for x in ['fold', 'eval', 'heat', 'pdist', 'distance', + 'inverse', 'plot', 'subopt', 'Lfold', 'cofold', + 'paln', 'duplex', 'alifold', 'plfold', 'up', + 'aliduplex', 'Lalifold', '2Dfold', 'parconv', + 'PKplex', 'plex', 'snoop', 'forester']] + + ['bin/Kinfold'], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb index 6f92dee8377002961466f6b8d2090e0fc3b360f0..327bd773ebd30f710439e4b1e88bf19d281767a7 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-goolf-1.4.10.eb @@ -37,7 +37,7 @@ sanity_check_paths = { 'paln', 'duplex', 'alifold', 'plfold', 'up', 'aliduplex', 'Lalifold', '2Dfold', 'parconv', 'PKplex', 'plex', 'snoop', 'forester']] + - ['bin/Kinfold'], + ['bin/Kinfold'], 'dirs': [], } diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb index 68de4eec04c70af41afa6b6b1330ae0a7a841b13..375b58016f98221a819281f38e618bd925f655a9 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-4.0.6.eb @@ -34,13 +34,13 @@ configopts = '--without-perl' #preconfigopts = 'PERLPREFIX="/path/where/the/perl/module/shoud/go"' sanity_check_paths = { - 'files': ['bin/RNA%s' % x for x in ['fold', 'eval', 'heat', 'pdist', 'distance', - 'inverse', 'plot', 'subopt', 'Lfold', 'cofold', - 'paln', 'duplex', 'alifold', 'plfold', 'up', - 'aliduplex', 'Lalifold', '2Dfold', 'parconv', - 'PKplex', 'plex', 'snoop', 'forester']] + - ['bin/Kinfold'], - 'dirs': [] - } + 'files': ['bin/RNA%s' % x for x in ['fold', 'eval', 'heat', 'pdist', 'distance', + 'inverse', 'plot', 'subopt', 'Lfold', 'cofold', + 'paln', 'duplex', 'alifold', 'plfold', 'up', + 'aliduplex', 'Lalifold', '2Dfold', 'parconv', + 'PKplex', 'plex', 'snoop', 'forester']] + + ['bin/Kinfold'], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb index 14f9815f66cd710b19acdaca677393acb583a671..316c43df98161f2ff6450634ca06bc465b1370ca 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.0.7-ictce-5.3.0.eb @@ -35,13 +35,13 @@ configopts = '--without-perl' #preconfigopts = 'PERLPREFIX="/path/where/the/perl/module/shoud/go"' sanity_check_paths = { - 'files': ['bin/RNA%s' % x for x in ['fold', 'eval', 'heat', 'pdist', 'distance', - 'inverse', 'plot', 'subopt', 'Lfold', 'cofold', - 'paln', 'duplex', 'alifold', 'plfold', 'up', - 'aliduplex', 'Lalifold', '2Dfold', 'parconv', - 'PKplex', 'plex', 'snoop', 'forester']] + - ['bin/Kinfold'], - 'dirs': [] - } + 'files': ['bin/RNA%s' % x for x in ['fold', 'eval', 'heat', 'pdist', 'distance', + 'inverse', 'plot', 'subopt', 'Lfold', 'cofold', + 'paln', 'duplex', 'alifold', 'plfold', 'up', + 'aliduplex', 'Lalifold', '2Dfold', 'parconv', + 'PKplex', 'plex', 'snoop', 'forester']] + + ['bin/Kinfold'], + 'dirs': [] +} moduleclass = 'bio' diff --git a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb index 281ecf7b59fe49b46c9b17e137c8d62728ac5b50..d9a8ebec9218981b9e951731fb72c598d454fdf6 100644 --- a/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/v/ViennaRNA/ViennaRNA-2.1.6-ictce-5.5.0.eb @@ -19,7 +19,7 @@ homepage = 'http://www.tbi.univie.ac.at/~ronny/RNA/vrna2.html' description = """The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures.""" -toolchain = {'name': 'ictce', 'version': '5.5.0' } +toolchain = {'name': 'ictce', 'version': '5.5.0'} toolchainopts = {'optarch': True, 'pic': True} sources = [SOURCE_TAR_GZ] @@ -39,9 +39,8 @@ sanity_check_paths = { 'paln', 'duplex', 'alifold', 'plfold', 'up', 'aliduplex', 'Lalifold', '2Dfold', 'parconv', 'PKplex', 'plex', 'snoop', 'forester']] + - ['bin/Kinfold'], + ['bin/Kinfold'], 'dirs': [], } moduleclass = 'bio' - diff --git a/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb b/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb index 9ed98058b97d7cca29e22c5aaeccbedca22717e8..824152274f5ea91bf82f8a7b2d058be47e1931e8 100644 --- a/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/v/Vim/Vim-7.4-goolf-1.4.10.eb @@ -22,12 +22,12 @@ sources = [SOURCELOWER_TAR_BZ2] dependencies = [ ('Python', '2.7.5'), ('Perl', '5.16.3') - ] +] configopts = '--with-features=huge --enable-pythoninterp=yes --enable-perlinterp=yes' sanity_check_paths = { - 'files': ['bin/vim','bin/vimdiff'], + 'files': ['bin/vim', 'bin/vimdiff'], 'dirs': [], } diff --git a/easybuild/easyconfigs/v/Viper/Viper-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/v/Viper/Viper-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb index ba86942900458db7a8a842a539a7280650df9b7c..66555db5aacfb9d5cf3fec23ac30341691df44cf 100644 --- a/easybuild/easyconfigs/v/Viper/Viper-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/v/Viper/Viper-1.0.0-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -26,8 +26,8 @@ dependencies = [(python, pythonversion)] options = {'modulename': 'os'} sanity_check_paths = { - 'files': [], - 'dirs': ['bin', 'lib/python%s/site-packages/viper' % pythonshortversion] - } + 'files': [], + 'dirs': ['bin', 'lib/python%s/site-packages/viper' % pythonshortversion] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/v/Viper/Viper-1.0.0-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/v/Viper/Viper-1.0.0-ictce-4.0.6-Python-2.7.3.eb index 45f56436e0ac6f5508380ebbd9425c68f8ff8e45..031d7e98f103d8f12acf6ca25af97e2d48b13a2f 100644 --- a/easybuild/easyconfigs/v/Viper/Viper-1.0.0-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/v/Viper/Viper-1.0.0-ictce-4.0.6-Python-2.7.3.eb @@ -26,8 +26,8 @@ dependencies = [(python, pythonversion)] options = {'modulename': 'os'} sanity_check_paths = { - 'files': [], - 'dirs': ['bin', 'lib/python%s/site-packages/viper' % pythonshortversion] - } + 'files': [], + 'dirs': ['bin', 'lib/python%s/site-packages/viper' % pythonshortversion] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/v/Viper/Viper-1.0.0-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/v/Viper/Viper-1.0.0-ictce-5.3.0-Python-2.7.3.eb index 144a9dcc467e291ea979832677dac94d6b4341fd..5c807c96fb6c38f4b2e0ec9c19854898272ad46a 100644 --- a/easybuild/easyconfigs/v/Viper/Viper-1.0.0-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/v/Viper/Viper-1.0.0-ictce-5.3.0-Python-2.7.3.eb @@ -27,8 +27,8 @@ dependencies = [(python, pythonversion)] options = {'modulename': 'os'} sanity_check_paths = { - 'files': [], - 'dirs': ['bin', 'lib/python%s/site-packages/viper' % pythonshortversion] - } + 'files': [], + 'dirs': ['bin', 'lib/python%s/site-packages/viper' % pythonshortversion] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/v/vincent/vincent-0.4.4-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/v/vincent/vincent-0.4.4-intel-2015a-Python-2.7.10.eb index f23a488554748b2ad9d53333b85c58f00ed6ae0d..0c1009a3abf84f930e70faace840396bb3036d80 100644 --- a/easybuild/easyconfigs/v/vincent/vincent-0.4.4-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/v/vincent/vincent-0.4.4-intel-2015a-Python-2.7.10.eb @@ -10,7 +10,7 @@ description = """Vincent takes Python data structures (tuples, lists, dicts, and toolchain = {'name': 'intel', 'version': '2015a'} -source_urls = [PYPI_SOURCE] +source_urls = [PYPI_SOURCE] sources = [SOURCELOWER_TAR_GZ] python = 'Python' diff --git a/easybuild/easyconfigs/v/vincent/vincent-0.4.4-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/v/vincent/vincent-0.4.4-intel-2015b-Python-2.7.10.eb index 3ee6bac25354c737465b0e2def69078a5d25cedf..c16f8a1ce66f5c86eff389f4ca7f946769df0a31 100644 --- a/easybuild/easyconfigs/v/vincent/vincent-0.4.4-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/v/vincent/vincent-0.4.4-intel-2015b-Python-2.7.10.eb @@ -10,7 +10,7 @@ description = """Vincent takes Python data structures (tuples, lists, dicts, and toolchain = {'name': 'intel', 'version': '2015b'} -source_urls = [PYPI_SOURCE] +source_urls = [PYPI_SOURCE] sources = [SOURCELOWER_TAR_GZ] python = 'Python' diff --git a/easybuild/easyconfigs/v/vsc-base/vsc-base-2.4.17-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/v/vsc-base/vsc-base-2.4.17-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..29c125cb6e0aee79efccebbed85f9a9280ea946b --- /dev/null +++ b/easybuild/easyconfigs/v/vsc-base/vsc-base-2.4.17-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,28 @@ +easyblock = 'PythonPackage' + +name = 'vsc-base' +version = '2.4.17' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://pypi.python.org/pypi/vsc-base' +description = """Base library for Python tools developed by UGent's HPC group, including generaloption (option parser) +and fancylogger (logging functionality).""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [PYPI_SOURCE] + +dependencies = [ + ('Python', '2.7.11'), + ('vsc-install', '0.9.18', versionsuffix), +] + +options = {'modulename': 'vsc.utils.fancylogger'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/v/vsc-base/vsc-base-2.4.17-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/v/vsc-base/vsc-base-2.4.17-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..bf597beacdfa0ab8f1cb8e39c2fbc2f3c4e1e22f --- /dev/null +++ b/easybuild/easyconfigs/v/vsc-base/vsc-base-2.4.17-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,28 @@ +easyblock = 'PythonPackage' + +name = 'vsc-base' +version = '2.4.17' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://pypi.python.org/pypi/vsc-base' +description = """Base library for Python tools developed by UGent's HPC group, including generaloption (option parser) +and fancylogger (logging functionality).""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [PYPI_SOURCE] + +dependencies = [ + ('Python', '2.7.11'), + ('vsc-install', '0.9.18', versionsuffix), +] + +options = {'modulename': 'vsc.utils.fancylogger'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/v/vsc-install/vsc-install-0.9.18-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/v/vsc-install/vsc-install-0.9.18-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..d0d69c63a64ce6f022f375b9438162a96ad58472 --- /dev/null +++ b/easybuild/easyconfigs/v/vsc-install/vsc-install-0.9.18-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'vsc-install' +version = '0.9.18' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://pypi.python.org/pypi/vsc-install' +description = """vsc-install provides shared setuptools functions and classes for Python libraries + developed by UGent's HPC group""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCE_TAR_GZ] +source_urls = [PYPI_SOURCE] + +dependencies = [ + ('Python', '2.7.11'), +] + +options = {'modulename': 'vsc.install'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/v/vsc-install/vsc-install-0.9.18-intel-2016a-Python-2.7.11.eb b/easybuild/easyconfigs/v/vsc-install/vsc-install-0.9.18-intel-2016a-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..a3123a79e4f19c36097fc60b415059ae922404ab --- /dev/null +++ b/easybuild/easyconfigs/v/vsc-install/vsc-install-0.9.18-intel-2016a-Python-2.7.11.eb @@ -0,0 +1,27 @@ +easyblock = 'PythonPackage' + +name = 'vsc-install' +version = '0.9.18' +versionsuffix = '-Python-%(pyver)s' + +homepage = 'https://pypi.python.org/pypi/vsc-install' +description = """vsc-install provides shared setuptools functions and classes for Python libraries + developed by UGent's HPC group""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [PYPI_SOURCE] + +dependencies = [ + ('Python', '2.7.11'), +] + +options = {'modulename': 'vsc.install'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/v/vsc-mympirun-scoop/vsc-mympirun-scoop-3.3.0-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/v/vsc-mympirun-scoop/vsc-mympirun-scoop-3.3.0-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..1bbd44502a05ff68bd072e890594d0df89ae5b0a --- /dev/null +++ b/easybuild/easyconfigs/v/vsc-mympirun-scoop/vsc-mympirun-scoop-3.3.0-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,32 @@ +easyblock = 'VSCPythonPackage' + +name = 'vsc-mympirun-scoop' +version = '3.3.0' + +homepage = 'http://hpcugent.github.com/vsc-mympirun/' +description = """VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent.""" + +# we build this to work with every python version +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/hpcugent/vsc-mympirun-scoop/archive/'] + +python = 'Python' +pyver = '2.7.10' +versionsuffix = '-%s-%s' % (python, pyver) +dependencies = [ + ('vsc-processcontrol', '1.0', '-vsc-base-2.1.2', True), + ('vsc-mympirun', '3.4.2', '', True), + (python, pyver), + ('SCOOP', '0.6.2', versionsuffix), +] + +options = {'modulename': 'vsc.mympirun.scoop'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/vsc/mympirun/scoop'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/v/vsc-mympirun-scoop/vsc-mympirun-scoop-3.4.1-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/v/vsc-mympirun-scoop/vsc-mympirun-scoop-3.4.1-intel-2015b-Python-2.7.10.eb new file mode 100644 index 0000000000000000000000000000000000000000..24d1ff604f733aad96ba1b21decdca016ece8607 --- /dev/null +++ b/easybuild/easyconfigs/v/vsc-mympirun-scoop/vsc-mympirun-scoop-3.4.1-intel-2015b-Python-2.7.10.eb @@ -0,0 +1,32 @@ +easyblock = 'VSCPythonPackage' + +name = 'vsc-mympirun-scoop' +version = '3.4.1' + +homepage = 'http://hpcugent.github.com/vsc-mympirun/' +description = """VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent.""" + +# we build this to work with every python version +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/hpcugent/vsc-mympirun-scoop/archive/'] + +python = 'Python' +pyver = '2.7.10' +versionsuffix = '-%s-%s' % (python, pyver) +dependencies = [ + ('vsc-processcontrol', '1.0', '-vsc-base-2.1.2', True), + ('vsc-mympirun', '3.4.2', '', True), + (python, pyver), + ('SCOOP', '0.6.2', versionsuffix), +] + +options = {'modulename': 'vsc.mympirun.scoop'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/vsc/mympirun/scoop'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2-intel-2015b-Python-2.7.11-vsc-base-2.4.17.eb b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2-intel-2015b-Python-2.7.11-vsc-base-2.4.17.eb new file mode 100644 index 0000000000000000000000000000000000000000..100ec4fa9418f5b61f19718678f9ecc95b4f0e28 --- /dev/null +++ b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2-intel-2015b-Python-2.7.11-vsc-base-2.4.17.eb @@ -0,0 +1,32 @@ +easyblock = 'PythonPackage' + +name = 'vsc-mympirun' +version = '3.4.2' + +homepage = 'https://github.com/hpcugent/vsc-mympirun' +description = """VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/hpcugent/vsc-mympirun/archive/'] + +vsc_base_ver = '2.4.17' +versionsuffix = '-Python-%%(pyver)s-vsc-base-%s' % vsc_base_ver + +dependencies = [ + ('Python', '2.7.11'), + ('vsc-base', vsc_base_ver, '-Python-%(pyver)s'), +] + +# we ship something in bin/fake +modextrapaths = {'PATH': 'bin/fake'} + +options = {'modulename': 'vsc.mympirun'} + +sanity_check_paths = { + 'files': ['bin/mympirun'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2-intel-2016a-Python-2.7.11-vsc-base-2.4.17.eb b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2-intel-2016a-Python-2.7.11-vsc-base-2.4.17.eb new file mode 100755 index 0000000000000000000000000000000000000000..9ff223125fd9b893ab73745aa54ca13461f34593 --- /dev/null +++ b/easybuild/easyconfigs/v/vsc-mympirun/vsc-mympirun-3.4.2-intel-2016a-Python-2.7.11-vsc-base-2.4.17.eb @@ -0,0 +1,32 @@ +easyblock = 'PythonPackage' + +name = 'vsc-mympirun' +version = '3.4.2' + +homepage = 'https://github.com/hpcugent/vsc-mympirun' +description = """VSC-tools is a set of Python libraries and scripts that are commonly used within HPC-UGent.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/hpcugent/vsc-mympirun/archive/'] + +vsc_base_ver = '2.4.17' +versionsuffix = '-Python-%%(pyver)s-vsc-base-%s' % vsc_base_ver + +dependencies = [ + ('Python', '2.7.11'), + ('vsc-base', vsc_base_ver, '-Python-%(pyver)s'), +] + +# we ship something in bin/fake +modextrapaths = {'PATH': 'bin/fake'} + +options = {'modulename': 'vsc.mympirun'} + +sanity_check_paths = { + 'files': ['bin/mympirun'], + 'dirs': ['lib/python%(pyshortver)s/site-packages'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/v/vsc-processcontrol/vsc-processcontrol-1.0-vsc-base-2.1.2.eb b/easybuild/easyconfigs/v/vsc-processcontrol/vsc-processcontrol-1.0-vsc-base-2.1.2.eb new file mode 100644 index 0000000000000000000000000000000000000000..761d760aa280c3ab1ce711e8813d41965931942e --- /dev/null +++ b/easybuild/easyconfigs/v/vsc-processcontrol/vsc-processcontrol-1.0-vsc-base-2.1.2.eb @@ -0,0 +1,27 @@ +easyblock = 'VSCPythonPackage' + +name = 'vsc-processcontrol' +version = '1.0' + +homepage = 'http://hpcugent.github.com/vsc-processcontrol/' +description = """vsc-processcontrol is a module to abstract process control like scheduler settings and affinity + from actual implementations like vsc.affinity and psutil.""" + +# we build this to work with every python version +toolchain = {'name': 'dummy', 'version': ''} + +sources = [SOURCE_TAR_GZ] +source_urls = ['https://github.com/hpcugent/vsc-processcontrol/archive/'] + +vsc_base_ver = '2.1.2' +versionsuffix = '-vsc-base-%s' % vsc_base_ver +dependencies = [('vsc-base', vsc_base_ver)] + +options = {'modulename': 'sys; print sys.path; import vsc; print vsc.__path__; import vsc.processcontrol'} + +sanity_check_paths = { + 'files': [], + 'dirs': ['lib/vsc/processcontrol'], +} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/w/WEKA/WEKA-3.7.0-Java-1.7.0_80.eb b/easybuild/easyconfigs/w/WEKA/WEKA-3.7.0-Java-1.7.0_80.eb new file mode 100644 index 0000000000000000000000000000000000000000..396230d2a7d10f1aabd6af04d686cdf70f835760 --- /dev/null +++ b/easybuild/easyconfigs/w/WEKA/WEKA-3.7.0-Java-1.7.0_80.eb @@ -0,0 +1,40 @@ +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# Author: Pablo Escobar Lopez +# Swiss Institute of Bioinformatics +# Biozentrum - University of Basel + +easyblock = "Tarball" + +name = 'WEKA' +version = '3.7.0' + +homepage = 'http://www.cs.waikato.ac.nz/ml/weka/index.html' +description = """ Weka is a collection of machine learning algorithms for data mining tasks. + The algorithms can either be applied directly to a dataset or called from your own Java code. + Weka contains tools for data pre-processing, classification, regression, clustering, + association rules, and visualization. It is also well-suited for developing new machine + learning schemes.""" + +toolchain = {'name': 'dummy', 'version': ''} + +source_urls = ['http://prdownloads.sourceforge.net/weka/'] +sources = ['%s-%s.zip' % (name.lower(), version.replace('.', '-'))] + +java = 'Java' +javaver = '1.7.0_80' +versionsuffix = '-%s-%s' % (java, javaver) + +dependencies = [(java, javaver)] + +sanity_check_paths = { + 'files': ["weka.jar"], + 'dirs': [] +} + +modextravars = { + 'WEKAINSTALL': '$root', +} + +modloadmsg = " execute WEKA: java -jar \\$EBROOTWEKA/weka.jar " + +moduleclass = 'bio' diff --git a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-12.1-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-12.1-goalf-1.1.0-no-OFED.eb index 77cc5a82b087be48b1a2927f8a745811877fa61b..c324b952c661d41501b299f28cf1f20dcd7ee32a 100644 --- a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-12.1-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-12.1-goalf-1.1.0-no-OFED.eb @@ -16,16 +16,16 @@ patches = ['WIEN2k-12.1_fix-range-array-constructor.patch'] osdependencies = ['libpthread.a'] # delivered by glibc-static or glibc-devel tests = [ - # test case 1: NaCl - ('NaCl', '-b', '-i 3', [r'^:DIS.*0.1227', r'^:ENE.*-1248.1427']), - # test case 2: TiO2 - ('TiO2', - '-b -numk 1000 -rkmax 7.5', - '-in1ef -cc 0.00001 -fc 0.5 -i 100', - [r'^:ENE.*-4018.0761', - r'^:FGL001.*\s+[0.]+\s+[0.]+\s+[0.]+\s+total forces', - r'^:FGL002.*14.63.*total forces' - ]) - ] + # test case 1: NaCl + ('NaCl', '-b', '-i 3', [r'^:DIS.*0.1227', r'^:ENE.*-1248.1427']), + # test case 2: TiO2 + ('TiO2', + '-b -numk 1000 -rkmax 7.5', + '-in1ef -cc 0.00001 -fc 0.5 -i 100', + [r'^:ENE.*-4018.0761', + r'^:FGL001.*\s+[0.]+\s+[0.]+\s+[0.]+\s+total forces', + r'^:FGL002.*14.63.*total forces' + ]) +] moduleclass = 'chem' diff --git a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-12.1-goolf-1.4.10.eb b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-12.1-goolf-1.4.10.eb index 244607e4e41b897541727917bd8d7cda0f09a8bb..074aab4b4ca3398c9efef93551cd6a0f89b320f7 100644 --- a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-12.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-12.1-goolf-1.4.10.eb @@ -25,7 +25,7 @@ tests = [ [r'^:ENE.*-4018.0761', r'^:FGL001.*\s+[0.]+\s+[0.]+\s+[0.]+\s+total forces', r'^:FGL002.*14.63.*total forces' - ]), + ]), ] moduleclass = 'chem' diff --git a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-12.1-ictce-4.0.6.eb b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-12.1-ictce-4.0.6.eb index 924f23b3b4c5f234689bf64c66bd2d9dba7d1a23..233776585c8bef0ff5b1ef42f08d3d57e900860a 100644 --- a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-12.1-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-12.1-ictce-4.0.6.eb @@ -18,16 +18,16 @@ dependencies = [('FFTW', '3.3.1')] osdependencies = ['libpthread.a'] # delivered by glibc-static or glibc-devel tests = [ - # test case 1: NaCl - ('NaCl', '-b', '-i 3', [r'^:DIS.*0.1227', r'^:ENE.*-1248.1427']), - # test case 2: TiO2 - ('TiO2', - '-b -numk 1000 -rkmax 7.5', - '-in1ef -cc 0.00001 -fc 0.5 -i 100', - [r'^:ENE.*-4018.0761', - r'^:FGL001.*\s+[0.]+\s+[0.]+\s+[0.]+\s+total forces', - r'^:FGL002.*14.63.*total forces' - ]) - ] + # test case 1: NaCl + ('NaCl', '-b', '-i 3', [r'^:DIS.*0.1227', r'^:ENE.*-1248.1427']), + # test case 2: TiO2 + ('TiO2', + '-b -numk 1000 -rkmax 7.5', + '-in1ef -cc 0.00001 -fc 0.5 -i 100', + [r'^:ENE.*-4018.0761', + r'^:FGL001.*\s+[0.]+\s+[0.]+\s+[0.]+\s+total forces', + r'^:FGL002.*14.63.*total forces' + ]) +] moduleclass = 'chem' diff --git a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1-intel-2014b.eb b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1-intel-2014b.eb index 9a8f71d9ca8e939815707671b685d6e483d14fc2..d99b5a04c843c2f36b10a7e0906aa4704ead8184 100644 --- a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1-intel-2014b.eb +++ b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1-intel-2014b.eb @@ -37,10 +37,10 @@ tests = [ '-b -numk 1000 -rkmax 7.5', '-in1ef -cc 0.00001 -fc 0.5 -i 100', [ - r'^:ENE.*-4018.07', - r'^:FGL001.*\s+[0.]+\s+[0.]+\s+[0.]+\s+total forces', - r'^:FGL002.*14.63.*total forces', - ]), + r'^:ENE.*-4018.07', + r'^:FGL001.*\s+[0.]+\s+[0.]+\s+[0.]+\s+total forces', + r'^:FGL002.*14.63.*total forces', + ]), ] moduleclass = 'chem' diff --git a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1-intel-2015a.eb b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1-intel-2015a.eb index a5d641a90f9785c8324c4cdf0f45a475be8ceaa8..4fc60981dc1043f393582e0b5179c2dba362188f 100644 --- a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1-intel-2015a.eb +++ b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.1-intel-2015a.eb @@ -37,10 +37,10 @@ tests = [ '-b -numk 1000 -rkmax 7.5', '-in1ef -cc 0.00001 -fc 0.5 -i 100', [ - r'^:ENE.*-4018.07', - r'^:FGL001.*\s+[0.]+\s+[0.]+\s+[0.]+\s+total forces', - r'^:FGL002.*14.63.*total forces', - ]), + r'^:ENE.*-4018.07', + r'^:FGL001.*\s+[0.]+\s+[0.]+\s+[0.]+\s+total forces', + r'^:FGL002.*14.63.*total forces', + ]), ] moduleclass = 'chem' diff --git a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.2-intel-2015a.eb b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.2-intel-2015a.eb index 5149928839f335388946ffc422ca9f1faca0e75a..2e1d5ab15d8789787de0b72fe69206240a01cb9b 100644 --- a/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.2-intel-2015a.eb +++ b/easybuild/easyconfigs/w/WIEN2k/WIEN2k-14.2-intel-2015a.eb @@ -31,10 +31,10 @@ tests = [ '-b -numk 1000 -rkmax 7.5', '-in1ef -cc 0.00001 -fc 0.5 -i 100', [ - r'^:ENE.*-4018.07', - r'^:FGL001.*\s+[0.]+\s+[0.]+\s+[0.]+\s+total forces', - r'^:FGL002.*14.63.*total forces', - ]), + r'^:ENE.*-4018.07', + r'^:FGL001.*\s+[0.]+\s+[0.]+\s+[0.]+\s+total forces', + r'^:FGL002.*14.63.*total forces', + ]), ] moduleclass = 'chem' diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb index 8e3d2604d54ca0803ad63734b67314dccf37942d..e43733e3f611d4be4ddff7439ec25265a5631b40 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-ictce-5.3.0-dmpar.eb @@ -25,7 +25,7 @@ dependencies = [ ('netCDF', '4.2.1.1'), ('netCDF-Fortran', '4.2'), ('libpng', '1.5.14'), - ('JasPer','1.900.1'), + ('JasPer', '1.900.1'), ] moduleclass = 'geo' diff --git a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb index 7d70493e14d3adbbb850bf2b9cf1f60f207d4a13..3a831bedc4684199d9a2a8b4ae62037e4947e7e8 100644 --- a/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb +++ b/easybuild/easyconfigs/w/WPS/WPS-3.4.1-iqacml-3.7.3-dmpar.eb @@ -25,7 +25,7 @@ dependencies = [ ('netCDF', '4.2.1.1'), ('netCDF-Fortran', '4.2'), ('libpng', '1.5.14'), - ('JasPer','1.900.1'), + ('JasPer', '1.900.1'), ] moduleclass = 'geo' diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb index aca6ed1e40ae9d55bcaa36cee80ce354ea1871e8..8654cbea4e4e55d658c4189b8b5bc2275006d951 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.5.1-goolf-1.5.14-dmpar.eb @@ -6,7 +6,7 @@ description = """The Weather Research and Forecasting (WRF) Model is a next-gene numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs.""" -toolchain = {'name': 'goolf', 'version': '1.5.14'} +toolchain = {'name': 'goolf', 'version': '1.5.14'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.40-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-2015.06-XC-dmpar.eb similarity index 94% rename from easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.40-dmpar.eb rename to easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-2015.06-XC-dmpar.eb index 4f97a286839880f07e25d069896b5f2c8175ff43..0b7fd5cfb3e1d7cffe8b17bf13fe81977e7a5ac2 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.40-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-2015.06-XC-dmpar.eb @@ -6,7 +6,7 @@ description = """The Weather Research and Forecasting (WRF) Model is a next-gene numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.25-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-2015.11-XC-dmpar.eb similarity index 79% rename from easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.25-dmpar.eb rename to easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-2015.11-XC-dmpar.eb index b4103d924fa83df6ee36da7a05352da7ae1474f4..d353e6742c3023f738b0c6d62f2eef53bed38d00 100644 --- a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.2.25-dmpar.eb +++ b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-2015.11-XC-dmpar.eb @@ -6,7 +6,7 @@ description = """The Weather Research and Forecasting (WRF) Model is a next-gene numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 sources = ['%(name)sV%(version)s.TAR.gz'] @@ -15,9 +15,8 @@ source_urls = [ 'http://www.mmm.ucar.edu/wrf/src/', ] -# use tcsh provided by system, using an EB-provided tcsh results in a hanging build command on some Cray systems -osdependencies = ['tcsh'] -#builddependencies = [('tcsh', '6.18.01')] +# csh is used by WRF install scripts +builddependencies = [('tcsh', '6.18.01')] dependencies = [ ('JasPer', '1.900.1'), diff --git a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb b/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb deleted file mode 100644 index cfdc17ab696c0e197eba66e03f6ebcb89b46f528..0000000000000000000000000000000000000000 --- a/easybuild/easyconfigs/w/WRF/WRF-3.6.1-CrayGNU-5.1.29-dmpar.eb +++ /dev/null @@ -1,42 +0,0 @@ -name = 'WRF' -version = '3.6.1' - -homepage = 'http://www.wrf-model.org' -description = """The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale - numerical weather prediction system designed to serve both operational forecasting and atmospheric - research needs.""" - -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} -toolchainopts = {'opt': False} # don't use agressive optimization, stick to -O2 - -sources = ['%(name)sV%(version)s.TAR.gz'] -source_urls = [ - 'http://www2.mmm.ucar.edu/wrf/src/', - 'http://www.mmm.ucar.edu/wrf/src/', -] - -# use tcsh provided by system, using an EB-provided tcsh results in a hanging build command on some Cray systems -osdependencies = ['tcsh'] -#builddependencies = [('tcsh', '6.18.01')] - -dependencies = [ - ('JasPer', '1.900.1'), - ('cray-netcdf/4.3.2', EXTERNAL_MODULE), - ('cray-hdf5-parallel/1.8.13', EXTERNAL_MODULE), -] - -patches = [ - 'WRF_parallel_build_fix.patch', - 'WRF-3.6.1_known_problems.patch', - 'WRF_tests_limit-runtimes.patch', -] - -# limit parallel build to 20 -maxparallel = 20 - -buildtype = "dmpar" -versionsuffix = '-%s' % buildtype - -runtest = False - -moduleclass = 'geo' diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 12cf06119f38e643a72c8be982b8d0ab0b66e529..e43780a277b7fb931bb5e4ee1bf1ec45f3ff94fa 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -22,9 +22,8 @@ description = """wiki2beamer converts a simple wiki-like syntax to complex LaTeX toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} -# eg. http://sourceforge.net/projects/wiki2beamer/files/wiki2beamer/wiki2beamer-0.9.5/wiki2beamer-0.9.5.zip/download -sources = ['wiki2beamer-0.9.5.zip'] -source_urls = ['http://sourceforge.net/projects/wiki2beamer/files/wiki2beamer/wiki2beamer-0.9.5','download'] +sources = ['wiki2beamer-%(version)s.zip'] +source_urls = ['http://sourceforge.net/projects/wiki2beamer/files/wiki2beamer/wiki2beamer-%(version)s', 'download'] python = 'Python' pyver = '2.7.3' @@ -37,8 +36,8 @@ start_dir = 'code' options = {'modulename': False} sanity_check_paths = { - 'files': ["bin/wiki2beamer"], - 'dirs': ["."] - } + 'files': ["bin/wiki2beamer"], + 'dirs': ["."] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb index e59097b639d201a327e3894e8087030163f22161..71553532b149b6ea24016f6b76131a29699c0882 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-goolf-1.4.10-Python-2.7.3.eb @@ -22,9 +22,8 @@ description = """wiki2beamer converts a simple wiki-like syntax to complex LaTeX toolchain = {'name': 'goolf', 'version': '1.4.10'} -# eg. http://sourceforge.net/projects/wiki2beamer/files/wiki2beamer/wiki2beamer-0.9.5/wiki2beamer-0.9.5.zip/download -sources = ['wiki2beamer-0.9.5.zip'] -source_urls = ['http://sourceforge.net/projects/wiki2beamer/files/wiki2beamer/wiki2beamer-0.9.5','download'] +sources = ['wiki2beamer-%(version)s.zip'] +source_urls = ['http://sourceforge.net/projects/wiki2beamer/files/wiki2beamer/wiki2beamer-%(version)s', 'download'] python = 'Python' pyver = '2.7.3' diff --git a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb index 37b9d91c99588a309542d2d6f42f0288fc1a8935..b2e2623f1fc8cb6e0f85d2ca467492f68dc54c2f 100644 --- a/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/w/wiki2beamer/wiki2beamer-0.9.5-ictce-5.3.0-Python-2.7.3.eb @@ -22,9 +22,8 @@ description = """wiki2beamer converts a simple wiki-like syntax to complex LaTeX toolchain = {'name': 'ictce', 'version': '5.3.0'} -# eg. http://sourceforge.net/projects/wiki2beamer/files/wiki2beamer/wiki2beamer-0.9.5/wiki2beamer-0.9.5.zip/download -sources = ['wiki2beamer-0.9.5.zip'] -source_urls = ['http://sourceforge.net/projects/wiki2beamer/files/wiki2beamer/wiki2beamer-0.9.5','download'] +sources = ['wiki2beamer-%(version)s.zip'] +source_urls = ['http://sourceforge.net/projects/wiki2beamer/files/wiki2beamer/wiki2beamer-%(version)s', 'download'] python = 'Python' pyver = '2.7.3' @@ -37,8 +36,8 @@ start_dir = 'code' options = {'modulename': False} sanity_check_paths = { - 'files': ["bin/wiki2beamer"], - 'dirs': ["."] - } + 'files': ["bin/wiki2beamer"], + 'dirs': ["."] +} moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/XCrySDen/XCrySDen-1.5.53-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/x/XCrySDen/XCrySDen-1.5.53-goalf-1.1.0-no-OFED.eb index a68cdcecf89cf2a9df3fe0eef68342d3c1b62e96..29c6323d63f788f1e11c836a434c263490548afe 100644 --- a/easybuild/easyconfigs/x/XCrySDen/XCrySDen-1.5.53-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/x/XCrySDen/XCrySDen-1.5.53-goalf-1.1.0-no-OFED.eb @@ -16,10 +16,10 @@ patches = ['XCrySDen_no-bwidget.patch'] tcltk_ver = '8.5.12' dependencies = [ - ('Tcl', tcltk_ver), - ('Tk', tcltk_ver), - ('Mesa', '7.11.2', '-Python-2.7.3'), - ] + ('Tcl', tcltk_ver), + ('Tk', tcltk_ver), + ('Mesa', '7.11.2', '-Python-2.7.3'), +] osdependencies = ['libXmu-devel'] diff --git a/easybuild/easyconfigs/x/XCrySDen/XCrySDen-1.5.53-ictce-4.0.6.eb b/easybuild/easyconfigs/x/XCrySDen/XCrySDen-1.5.53-ictce-4.0.6.eb index 75e7ae09d81fd9034fb735832255020969c4411e..bba359b7d71faee8909844b79504d676d20608b7 100644 --- a/easybuild/easyconfigs/x/XCrySDen/XCrySDen-1.5.53-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/x/XCrySDen/XCrySDen-1.5.53-ictce-4.0.6.eb @@ -15,10 +15,10 @@ patches = ['XCrySDen_no-bwidget.patch'] tcltk_ver = '8.5.12' dependencies = [ - ('Tcl', tcltk_ver), - ('Tk', tcltk_ver), - ('Mesa', '7.11.2', '-Python-2.7.3'), - ] + ('Tcl', tcltk_ver), + ('Tk', tcltk_ver), + ('Mesa', '7.11.2', '-Python-2.7.3'), +] osdependencies = ['libXmu-devel'] diff --git a/easybuild/easyconfigs/x/XCrySDen/XCrySDen-1.5.53-ictce-5.3.0.eb b/easybuild/easyconfigs/x/XCrySDen/XCrySDen-1.5.53-ictce-5.3.0.eb index 6c009ea47a8a729e2f0cc52b9dd52506dbec877d..a6b6321356c07fbc2a3e45078dbc5d0f5fb26caf 100644 --- a/easybuild/easyconfigs/x/XCrySDen/XCrySDen-1.5.53-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/x/XCrySDen/XCrySDen-1.5.53-ictce-5.3.0.eb @@ -16,10 +16,10 @@ patches = ['XCrySDen_no-bwidget.patch'] tcltk_ver = '8.5.12' dependencies = [ - ('Tcl', tcltk_ver), - ('Tk', tcltk_ver), - ('Mesa', '7.11.2', '-Python-2.7.3'), - ] + ('Tcl', tcltk_ver), + ('Tk', tcltk_ver), + ('Mesa', '7.11.2', '-Python-2.7.3'), +] osdependencies = ['libXmu-devel'] diff --git a/easybuild/easyconfigs/x/XKeyboardConfig/XKeyboardConfig-2.16-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/x/XKeyboardConfig/XKeyboardConfig-2.16-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..313bc69227176863635b779200a36aa6deeff6a1 --- /dev/null +++ b/easybuild/easyconfigs/x/XKeyboardConfig/XKeyboardConfig-2.16-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,37 @@ +easyblock = 'ConfigureMake' + +name = 'XKeyboardConfig' +version = '2.16' +versionsuffix = '-Python-2.7.11' + +homepage = 'http://www.freedesktop.org/wiki/Software/XKeyboardConfig/' +description = """The non-arch keyboard configuration database for X Window. + The goal is to provide the consistent, well-structured, + frequently released open source of X keyboard configuration data + for X Window System implementations (free, open source and commercial). + The project is targeted to XKB-based systems.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://ftp.x.org/pub/individual/data/xkeyboard-config/'] +sources = ['xkeyboard-config-%(version)s.tar.bz2'] + +builddependencies = [ + ('libxslt', '1.1.28'), + ('gettext', '0.19.6'), + ('intltool', '0.51.0'), +] + +dependencies = [ + ('libX11', '1.6.3', '-Python-2.7.11'), +] + +# see http://www.linuxfromscratch.org/blfs/view/svn/x/xkeyboard-config.html +configopts = '--with-xkb-rules-symlink=xorg ' + +sanity_check_paths = { + 'files': [], + 'dirs': ['share/X11/xkb'] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/XKeyboardConfig/XKeyboardConfig-2.16-intel-2015b.eb b/easybuild/easyconfigs/x/XKeyboardConfig/XKeyboardConfig-2.16-intel-2015b.eb index 2f437613fcdd0ea2d9bc69a446dfb7c8b1e84c4b..713916a02a8f1f078d1ccc357c2337f2abd0afd6 100644 --- a/easybuild/easyconfigs/x/XKeyboardConfig/XKeyboardConfig-2.16-intel-2015b.eb +++ b/easybuild/easyconfigs/x/XKeyboardConfig/XKeyboardConfig-2.16-intel-2015b.eb @@ -12,7 +12,7 @@ description = """The non-arch keyboard configuration database for X Window. toolchain = {'name': 'intel', 'version': '2015b'} -source_urls = ['http://ftp.x.org/pub/individual/data/xkeyboard-config/'] +source_urls = ['http://ftp.x.org/pub/individual/data/xkeyboard-config/'] sources = ['xkeyboard-config-%(version)s.tar.bz2'] builddependencies = [ @@ -25,7 +25,7 @@ dependencies = [ ('libX11', '1.6.3', '-Python-2.7.10'), ] -#see http://www.linuxfromscratch.org/blfs/view/svn/x/xkeyboard-config.html +# see http://www.linuxfromscratch.org/blfs/view/svn/x/xkeyboard-config.html configopts = '--with-xkb-rules-symlink=xorg ' sanity_check_paths = { diff --git a/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-goolf-1.4.10-with-incl-deps.eb b/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-goolf-1.4.10-with-incl-deps.eb index c1f4fa485c8a52d3abe146c463fab96e0ccb498b..ec08bd48fa2909fcf3d677c2092420df96f2b746 100644 --- a/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-goolf-1.4.10-with-incl-deps.eb +++ b/easybuild/easyconfigs/x/Xmipp/Xmipp-3.1-goolf-1.4.10-with-incl-deps.eb @@ -4,13 +4,13 @@ versionsuffix = '-with-incl-deps' homepage = 'http://xmipp.cnb.csic.es/' description = "Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy." - + source_urls = ['http://xmipp.cnb.csic.es/Downloads/'] sources = ['Xmipp-%(version)s-src.tar.gz'] - + toolchain = {'name': 'goolf', 'version': '1.4.10'} # note: all other dependencies are taken care of by Xmipp itself dependencies = [('Java', '1.7.0_80', '', True)] - + moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/x264/x264-20150930-intel-2015b.eb b/easybuild/easyconfigs/x/x264/x264-20150930-intel-2015b.eb index 962e01b94a5024aafc86bdc425e7c3340783337b..9483eafcda3d6e8217f5f858ac5b042b2f4ddc0f 100644 --- a/easybuild/easyconfigs/x/x264/x264-20150930-intel-2015b.eb +++ b/easybuild/easyconfigs/x/x264/x264-20150930-intel-2015b.eb @@ -17,7 +17,7 @@ dependencies = [('Yasm', '1.3.0')] configopts = " --enable-shared --enable-static " sanity_check_paths = { - 'files': ['bin/x264', 'include/x264_config.h', 'include/x264.h', 'lib/libx264.a', 'lib/libx264.so'], + 'files': ['bin/x264', 'include/x264_config.h', 'include/x264.h', 'lib/libx264.a', 'lib/libx264.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/x/x264/x264-20160114-foss-2015a.eb b/easybuild/easyconfigs/x/x264/x264-20160114-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..eddd9ff8e0db7127a3b1f6c4996a132ceec71e44 --- /dev/null +++ b/easybuild/easyconfigs/x/x264/x264-20160114-foss-2015a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'x264' +version = '20160114' + +homepage = 'http://www.videolan.org/developers/x264.html' +description = """x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 + AVC compression format, and is released under the terms of the GNU GPL.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['ftp://ftp.videolan.org/pub/videolan/x264/snapshots/'] +sources = ['x264-snapshot-%(version)s-2245-stable.tar.bz2'] + +dependencies = [('Yasm', '1.3.0')] + +configopts = " --enable-shared --enable-static " + +sanity_check_paths = { + 'files': ['bin/x264', 'include/x264_config.h', 'include/x264.h', 'lib/libx264.a', 'lib/libx264.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/x264/x264-20160114-gimkl-2.11.5.eb b/easybuild/easyconfigs/x/x264/x264-20160114-gimkl-2.11.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..c6c378ce92d3d372322a1c9fb5900a80e5936f71 --- /dev/null +++ b/easybuild/easyconfigs/x/x264/x264-20160114-gimkl-2.11.5.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'x264' +version = '20160114' + +homepage = 'http://www.videolan.org/developers/x264.html' +description = """x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 + AVC compression format, and is released under the terms of the GNU GPL.""" + +toolchain = {'name': 'gimkl', 'version': '2.11.5'} + +source_urls = ['ftp://ftp.videolan.org/pub/videolan/x264/snapshots/'] +sources = ['x264-snapshot-%(version)s-2245-stable.tar.bz2'] + +dependencies = [('Yasm', '1.3.0')] + +configopts = " --enable-shared --enable-static " + +sanity_check_paths = { + 'files': ['bin/x264', 'include/x264_config.h', 'include/x264.h', 'lib/libx264.a', 'lib/libx264.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/x264/x264-20160114-intel-2016a.eb b/easybuild/easyconfigs/x/x264/x264-20160114-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..9937ee8cc3927678c8d1ed2b45d8310504a5d1e6 --- /dev/null +++ b/easybuild/easyconfigs/x/x264/x264-20160114-intel-2016a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'x264' +version = '20160114' + +homepage = 'http://www.videolan.org/developers/x264.html' +description = """x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 + AVC compression format, and is released under the terms of the GNU GPL.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['ftp://ftp.videolan.org/pub/videolan/x264/snapshots/'] +sources = ['x264-snapshot-%(version)s-2245-stable.tar.bz2'] + +dependencies = [('Yasm', '1.3.0')] + +configopts = " --enable-shared --enable-static " + +sanity_check_paths = { + 'files': ['bin/x264', 'include/x264_config.h', 'include/x264.h', 'lib/libx264.a', 'lib/libx264.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'vis' diff --git a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-goolf-1.4.10.eb b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-goolf-1.4.10.eb index f4bfeba75e91c2231bd0df4fe33632e1f586505c..93be023dae5acb990f1116586c4b3e644e8ef91f 100644 --- a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-goolf-1.4.10.eb @@ -12,8 +12,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/data/'] sanity_check_paths = { - 'files' : ['include/X11/bitmaps/gray'], - 'dirs' : [] + 'files': ['include/X11/bitmaps/gray'], + 'dirs': [] } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-4.1.13.eb b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-4.1.13.eb index 73f42d47356da6d241c436eb540a9ee8508e8087..7edd725bb85748d08f67bef901f55353d1bbb4d0 100644 --- a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-4.1.13.eb @@ -11,8 +11,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/data/'] sanity_check_paths = { - 'files' : ['include/X11/bitmaps/gray'], - 'dirs' : [] + 'files': ['include/X11/bitmaps/gray'], + 'dirs': [] } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-5.3.0.eb b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-5.3.0.eb index 524c55782bd35a1230e9c7ca42cf680d8d7a462c..38732656c2e7860489961b858ce3088ee9708a01 100644 --- a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-ictce-5.3.0.eb @@ -12,8 +12,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/data/'] sanity_check_paths = { - 'files' : ['include/X11/bitmaps/gray'], - 'dirs' : [] + 'files': ['include/X11/bitmaps/gray'], + 'dirs': [] } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2014b.eb b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2014b.eb index e352b3479dcbb5f014e695005297ea880686c9a3..f7d2e42a4b41edbb23fc3664382a815cb5abd3e0 100644 --- a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2014b.eb +++ b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2014b.eb @@ -12,8 +12,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/data/'] sanity_check_paths = { - 'files' : ['include/X11/bitmaps/gray'], - 'dirs' : [] + 'files': ['include/X11/bitmaps/gray'], + 'dirs': [] } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2015a.eb b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2015a.eb index 159e636639b246048dd97fed9ed755c8e0815588..7c6cc82582a5bef0b2209fe49d78f789905b7d6a 100644 --- a/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2015a.eb +++ b/easybuild/easyconfigs/x/xbitmaps/xbitmaps-1.1.1-intel-2015a.eb @@ -12,8 +12,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/data/'] sanity_check_paths = { - 'files' : ['include/X11/bitmaps/gray'], - 'dirs' : [] + 'files': ['include/X11/bitmaps/gray'], + 'dirs': [] } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-foss-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-foss-2014b-Python-2.7.8.eb index ffd671773501cb9c70f46b9547ea0defdbc8b647..56c11b1259bdfbbc99f458cc60630bd1521cd3f2 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-foss-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-foss-2014b-Python-2.7.8.eb @@ -7,7 +7,7 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'foss', 'version': '2014b'} diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb index 1f1ee49c72485f77f468df66dafabf8bd7827eba..4e713d1007106bf508a99abf908b0abe8af61acd 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.10-intel-2014b-Python-2.7.8.eb @@ -9,7 +9,7 @@ latency hiding, direct access to the protocol, improved threading support, and e toolchain = {'name': 'intel', 'version': '2014b'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] python = 'Python' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-goolf-1.5.14-Python-2.7.9.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-goolf-1.5.14-Python-2.7.9.eb index 5321244281580227d68daaf7fa64b8ba1f2a05ae..5aabb670ddf18db5ce36cc9f96392d78e7fbc23d 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-goolf-1.5.14-Python-2.7.9.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-goolf-1.5.14-Python-2.7.9.eb @@ -9,7 +9,7 @@ description = """The X protocol C-language Binding (XCB) is a replacement for Xl toolchain = {'name': 'goolf', 'version': '1.5.14'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] python = 'Python' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015a-Python-2.7.10.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015a-Python-2.7.10.eb index 32ea56a932f28900507c4dd9c2a1cc7e6e9677e9..d27f91cf2b03d984b4b3855acc00f8a9c7313a27 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015a-Python-2.7.10.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015a-Python-2.7.10.eb @@ -9,7 +9,7 @@ latency hiding, direct access to the protocol, improved threading support, and e toolchain = {'name': 'intel', 'version': '2015a'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] python = 'Python' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015a-Python-2.7.9.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015a-Python-2.7.9.eb index 38f0fd5a8856e13e61a0ea7f9a9e3345e6e4ea16..7dd5fbf8e32816e58fdcb4205e0941f22a22a4ac 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015a-Python-2.7.9.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015a-Python-2.7.9.eb @@ -9,7 +9,7 @@ latency hiding, direct access to the protocol, improved threading support, and e toolchain = {'name': 'intel', 'version': '2015a'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] python = 'Python' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015b-Python-2.7.10.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015b-Python-2.7.10.eb index a52aa643f5f7b9228e1457b7b799b6a78a534223..be9444a25e308352697634d2115a70cb4bd22ef8 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015b-Python-2.7.10.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015b-Python-2.7.10.eb @@ -9,7 +9,7 @@ latency hiding, direct access to the protocol, improved threading support, and e toolchain = {'name': 'intel', 'version': '2015b'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] python = 'Python' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..47d245e6decd396923601b531681a0ac0afc0635 --- /dev/null +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,27 @@ +easyblock = 'ConfigureMake' + +name = 'xcb-proto' +version = '1.11' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +python = 'Python' +pyver = '2.7.11' +versionsuffix = '-%s-%s' % (python, pyver) +dependencies = [(python, pyver)] + +pyshortver = '.'.join(pyver.split('.')[0:2]) + +sanity_check_paths = { + 'files': ['lib/pkgconfig/xcb-proto.pc'], + 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..6a306d862eca4b0e2ea7173070860c51a1cbe006 --- /dev/null +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.11.eb @@ -0,0 +1,26 @@ +easyblock = 'ConfigureMake' + +name = 'xcb-proto' +version = '1.11' + +homepage = 'http://xcb.freedesktop.org/' +description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, +latency hiding, direct access to the protocol, improved threading support, and extensibility.""" + +# even though xcb-proto is installed with configure-make-make install, nothing is actually built; +# only .py files are installed using Python, and some .xlm flies copied, so OK to use dummy toolchain +toolchain = {'name': 'dummy', 'version': 'dummy'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +allow_system_deps = [('Python', SYS_PYTHON_VERSION)] + +pyshortver = '.'.join(SYS_PYTHON_VERSION.split('.')[0:2]) + +sanity_check_paths = { + 'files': ['lib/pkgconfig/xcb-proto.pc'], + 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goalf-1.1.0-no-OFED-Python-2.7.3.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goalf-1.1.0-no-OFED-Python-2.7.3.eb index 01ca8890f378e03123ae8f4370f676270464a575..6664f94fac8256657c7bb2fedaf9bd370429cd0c 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goalf-1.1.0-no-OFED-Python-2.7.3.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goalf-1.1.0-no-OFED-Python-2.7.3.eb @@ -7,7 +7,7 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} @@ -20,8 +20,8 @@ dependencies = [(python, pyver)] pyshortver = '.'.join(pyver.split('.')[0:2]) sanity_check_paths = { - 'files': ['lib/pkgconfig/xcb-proto.pc'], - 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] - } + 'files': ['lib/pkgconfig/xcb-proto.pc'], + 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.4.10-Python-2.7.3.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.4.10-Python-2.7.3.eb index 49ac560a5ba0ed2ccba478d5d94546ec464e2771..0d23ddbe58668101cab04f1c2e920e75430957f1 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.4.10-Python-2.7.3.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.4.10-Python-2.7.3.eb @@ -7,7 +7,7 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'goolf', 'version': '1.4.10'} diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.5.14-Python-2.7.3.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.5.14-Python-2.7.3.eb index ba3ec86dfdb58f6637e6a84c83eb45e7b6219993..da6b2762c10a89434d77e9a553b67a3213257f4f 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.5.14-Python-2.7.3.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-goolf-1.5.14-Python-2.7.3.eb @@ -7,7 +7,7 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'goolf', 'version': '1.5.14'} diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.0.6-Python-2.7.3.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.0.6-Python-2.7.3.eb index fb6b5dd346151ac734d310741a5e578b579e2890..2af6f49473bbaf22169ad50e8980fe708659d3ab 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.0.6-Python-2.7.3.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.0.6-Python-2.7.3.eb @@ -7,7 +7,7 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'ictce', 'version': '4.0.6'} @@ -20,8 +20,8 @@ dependencies = [(python, pyver)] pyshortver = '.'.join(pyver.split('.')[0:2]) sanity_check_paths = { - 'files': ['lib/pkgconfig/xcb-proto.pc'], - 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] - } + 'files': ['lib/pkgconfig/xcb-proto.pc'], + 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.1.13-Python-2.7.3.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.1.13-Python-2.7.3.eb index 673f729a0bb021255679d9fee9fbbcb430e07e9f..6bd488684da315fd6c34070bd730e8850ab9a937 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.1.13-Python-2.7.3.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-4.1.13-Python-2.7.3.eb @@ -7,7 +7,7 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'ictce', 'version': '4.1.13'} diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-5.3.0-Python-2.7.3.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-5.3.0-Python-2.7.3.eb index 153a7de4965e83196cf7bb125858d317aad8285f..d0f7ea41599762b0b3803ac151b23435da2986eb 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-5.3.0-Python-2.7.3.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-ictce-5.3.0-Python-2.7.3.eb @@ -7,7 +7,7 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] @@ -21,8 +21,8 @@ dependencies = [(python, pyver)] pyshortver = '.'.join(pyver.split('.')[0:2]) sanity_check_paths = { - 'files': ['lib/pkgconfig/xcb-proto.pc'], - 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] - } + 'files': ['lib/pkgconfig/xcb-proto.pc'], + 'dirs': ['lib/python%s/site-packages/xcbgen' % pyshortver] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2014b-Python-2.7.8.eb b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2014b-Python-2.7.8.eb index e1af44f5690a4d164cb4534e4c60cb298d4462be..d4f3a149dfeafe56c5df3a1ba6791422484d9d89 100644 --- a/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2014b-Python-2.7.8.eb +++ b/easybuild/easyconfigs/x/xcb-proto/xcb-proto-1.7-intel-2014b-Python-2.7.8.eb @@ -7,7 +7,7 @@ homepage = 'http://xcb.freedesktop.org/' description = """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.""" -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] toolchain = {'name': 'intel', 'version': '2014b'} diff --git a/easybuild/easyconfigs/x/xcb-util-image/xcb-util-image-0.4.0-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/x/xcb-util-image/xcb-util-image-0.4.0-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..83c4d8a05be82e19516fb47291787d3310b4dcc5 --- /dev/null +++ b/easybuild/easyconfigs/x/xcb-util-image/xcb-util-image-0.4.0-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'xcb-util-image' +version = '0.4.0' +versionsuffix = '-Python-2.7.11' + +homepage = 'http://xcb.freedesktop.org/' +description = """The xcb-util-image package provides additional extensions to the XCB library.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('xcb-util', '0.4.0', versionsuffix), +] + +sanity_check_paths = { + 'files': ['lib/libxcb-image.%s' % SHLIB_EXT], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xcb-util-image/xcb-util-image-0.4.0-intel-2015b.eb b/easybuild/easyconfigs/x/xcb-util-image/xcb-util-image-0.4.0-intel-2015b.eb index 5cf0e37d19e4b3e0ef740ffafc3e51afe7fbafdf..933c8b66d87f6dda094f191b46cceab045807c93 100644 --- a/easybuild/easyconfigs/x/xcb-util-image/xcb-util-image-0.4.0-intel-2015b.eb +++ b/easybuild/easyconfigs/x/xcb-util-image/xcb-util-image-0.4.0-intel-2015b.eb @@ -8,7 +8,7 @@ description = """The xcb-util-image package provides additional extensions to th toolchain = {'name': 'intel', 'version': '2015b'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ @@ -16,7 +16,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libxcb-image.so'], + 'files': ['lib/libxcb-image.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/x/xcb-util-keysyms/xcb-util-keysyms-0.4.0-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/x/xcb-util-keysyms/xcb-util-keysyms-0.4.0-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..8a78eed4007b40e3e367340c58df9b43391d3f01 --- /dev/null +++ b/easybuild/easyconfigs/x/xcb-util-keysyms/xcb-util-keysyms-0.4.0-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'xcb-util-keysyms' +version = '0.4.0' +versionsuffix = '-Python-2.7.11' + +homepage = 'http://xcb.freedesktop.org/' +description = """The xcb-util-keysyms package contains a library for + handling standard X key constants and conversion to/from keycodes.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('libxcb', '1.11.1', versionsuffix), +] + +sanity_check_paths = { + 'files': ['lib/libxcb-keysyms.so'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xcb-util-keysyms/xcb-util-keysyms-0.4.0-intel-2015b.eb b/easybuild/easyconfigs/x/xcb-util-keysyms/xcb-util-keysyms-0.4.0-intel-2015b.eb index 845c0b3ba8adf822a3feb87be09ea24cd47ad122..72d3c0d7bc167b7f64448dfaf7ec7ca011f392d6 100644 --- a/easybuild/easyconfigs/x/xcb-util-keysyms/xcb-util-keysyms-0.4.0-intel-2015b.eb +++ b/easybuild/easyconfigs/x/xcb-util-keysyms/xcb-util-keysyms-0.4.0-intel-2015b.eb @@ -9,7 +9,7 @@ description = """The xcb-util-keysyms package contains a library for toolchain = {'name': 'intel', 'version': '2015b'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ @@ -17,7 +17,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libxcb-keysyms.so'], + 'files': ['lib/libxcb-keysyms.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/x/xcb-util-renderutil/xcb-util-renderutil-0.3.9-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/x/xcb-util-renderutil/xcb-util-renderutil-0.3.9-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..1254207ef5d0249b21104f78d471ef97723d8513 --- /dev/null +++ b/easybuild/easyconfigs/x/xcb-util-renderutil/xcb-util-renderutil-0.3.9-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'xcb-util-renderutil' +version = '0.3.9' +versionsuffix = '-Python-2.7.11' + +homepage = 'http://xcb.freedesktop.org/' +description = """The xcb-util-renderutil package provides additional extensions to the XCB library.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('libxcb', '1.11.1', versionsuffix), +] + +sanity_check_paths = { + 'files': ['lib/libxcb-render-util.so'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xcb-util-renderutil/xcb-util-renderutil-0.3.9-intel-2015b.eb b/easybuild/easyconfigs/x/xcb-util-renderutil/xcb-util-renderutil-0.3.9-intel-2015b.eb index 55946bc4e1347cd0406538ed8b134463e4844e1d..561b237980b293155b5954ac354a7dd2b691170a 100644 --- a/easybuild/easyconfigs/x/xcb-util-renderutil/xcb-util-renderutil-0.3.9-intel-2015b.eb +++ b/easybuild/easyconfigs/x/xcb-util-renderutil/xcb-util-renderutil-0.3.9-intel-2015b.eb @@ -8,7 +8,7 @@ description = """The xcb-util-renderutil package provides additional extensions toolchain = {'name': 'intel', 'version': '2015b'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ @@ -16,7 +16,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libxcb-render-util.so'], + 'files': ['lib/libxcb-render-util.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/x/xcb-util-wm/xcb-util-wm-0.4.1-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/x/xcb-util-wm/xcb-util-wm-0.4.1-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..39589444102cec3cfbedf74607e3c333892bc86a --- /dev/null +++ b/easybuild/easyconfigs/x/xcb-util-wm/xcb-util-wm-0.4.1-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'xcb-util-wm' +version = '0.4.1' +versionsuffix = '-Python-2.7.11' + +homepage = 'http://xcb.freedesktop.org/' +description = """The xcb-util-wm package contains libraries which provide client and window-manager helpers for EWMH and ICCCM.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('libxcb', '1.11.1', versionsuffix), +] + +sanity_check_paths = { + 'files': ['lib/libxcb-%s.so' % x for x in ['ewmh', 'icccm']], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xcb-util-wm/xcb-util-wm-0.4.1-intel-2015b.eb b/easybuild/easyconfigs/x/xcb-util-wm/xcb-util-wm-0.4.1-intel-2015b.eb index 0ee7ac8271bc871f9d8f19d406d4cf940271f1fd..147e33bc0cd18eccbaec8bb76be0d1c6f746373c 100644 --- a/easybuild/easyconfigs/x/xcb-util-wm/xcb-util-wm-0.4.1-intel-2015b.eb +++ b/easybuild/easyconfigs/x/xcb-util-wm/xcb-util-wm-0.4.1-intel-2015b.eb @@ -8,7 +8,7 @@ description = """The xcb-util-wm package contains libraries which provide client toolchain = {'name': 'intel', 'version': '2015b'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ diff --git a/easybuild/easyconfigs/x/xcb-util/xcb-util-0.4.0-intel-2015b-Python-2.7.11.eb b/easybuild/easyconfigs/x/xcb-util/xcb-util-0.4.0-intel-2015b-Python-2.7.11.eb new file mode 100644 index 0000000000000000000000000000000000000000..0587deb544f195d11a27daa1619f23ab685e1430 --- /dev/null +++ b/easybuild/easyconfigs/x/xcb-util/xcb-util-0.4.0-intel-2015b-Python-2.7.11.eb @@ -0,0 +1,25 @@ +easyblock = 'ConfigureMake' + +name = 'xcb-util' +version = '0.4.0' +versionsuffix = '-Python-2.7.11' + +homepage = 'http://xcb.freedesktop.org/' +description = """The xcb-util package provides additional extensions to the XCB library, + many that were previously found in Xlib, but are not part of core X protocol""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://xcb.freedesktop.org/dist/'] +sources = [SOURCELOWER_TAR_GZ] + +dependencies = [ + ('libxcb', '1.11.1', versionsuffix), +] + +sanity_check_paths = { + 'files': ['lib/libxcb-util.so'], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xcb-util/xcb-util-0.4.0-intel-2015b.eb b/easybuild/easyconfigs/x/xcb-util/xcb-util-0.4.0-intel-2015b.eb index cc6561672e82a79e369932152f3c6c53da1a8a8a..a6a5649a3cbccef031a01c01a195dc690d988317 100644 --- a/easybuild/easyconfigs/x/xcb-util/xcb-util-0.4.0-intel-2015b.eb +++ b/easybuild/easyconfigs/x/xcb-util/xcb-util-0.4.0-intel-2015b.eb @@ -9,7 +9,7 @@ description = """The xcb-util package provides additional extensions to the XCB toolchain = {'name': 'intel', 'version': '2015b'} -source_urls = ['http://xcb.freedesktop.org/dist/'] +source_urls = ['http://xcb.freedesktop.org/dist/'] sources = [SOURCELOWER_TAR_GZ] dependencies = [ @@ -17,7 +17,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libxcb-util.so'], + 'files': ['lib/libxcb-util.%s' % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.4.10.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.4.10.eb index 3418593f36329ab1c39b2a4298996f2c36b99242..222c1cb8a93cd82532de38afaf6f6c4feca1a472 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.4.10.eb @@ -7,7 +7,6 @@ homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """XExtProto protocol headers.""" toolchain = {'name': 'goolf', 'version': '1.4.10'} -toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] @@ -15,10 +14,10 @@ source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', - 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', - 'xtestconst.h', 'xtestext1proto.h' - ] + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] ], 'dirs': [] } diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.5.14.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.5.14.eb index 3c2320e860aea6c7d197ad26c8ab5acb2c196ec4..f8d28a65179992046eea16a507573a6bac9f7a8b 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-goolf-1.5.14.eb @@ -7,7 +7,6 @@ homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """XExtProto protocol headers.""" toolchain = {'name': 'goolf', 'version': '1.5.14'} -toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] @@ -15,10 +14,10 @@ source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', - 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', - 'xtestconst.h', 'xtestext1proto.h' - ] + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] ], 'dirs': [] } diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-4.1.13.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-4.1.13.eb index 447dc3ac65a3ba955cf2adf65b30e44353b2bf4e..7e5dd653468151a5f9f75df07ec5a8d03ff57915 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-4.1.13.eb @@ -7,17 +7,16 @@ homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """XExtProto protocol headers.""" toolchain = {'name': 'ictce', 'version': '4.1.13'} -toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', - 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', - 'xtestconst.h', 'xtestext1proto.h' - ] + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] ], 'dirs': [] } diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-5.3.0.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-5.3.0.eb index 6256b4a10c6d7ec4790caa8727d1414b33840f0c..e73a8f9515b6973d0e230ee4dfe13a974e9a0892 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-ictce-5.3.0.eb @@ -7,17 +7,16 @@ homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """XExtProto protocol headers.""" toolchain = {'name': 'ictce', 'version': '5.3.0'} -toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', - 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', - 'xtestconst.h', 'xtestext1proto.h' - ] + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] ], 'dirs': [] } diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2014b.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2014b.eb index d79aece7ee693d9cd8099335a6693ccc9c6f8b6d..0f74426405a6c54e78479be6416085e7ea7f5b3b 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2014b.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.2.1-intel-2014b.eb @@ -7,17 +7,16 @@ homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """XExtProto protocol headers.""" toolchain = {'name': 'intel', 'version': '2014b'} -toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', - 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', - 'xtestconst.h', 'xtestext1proto.h' - ] + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] ], 'dirs': [] } diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb index bfc2d59685160d91edb8da79a8162a64829dcfc2..bceed613218d94671824f9ca2f80728317413fa0 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-foss-2014b.eb @@ -7,17 +7,16 @@ homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """XExtProto protocol headers.""" toolchain = {'name': 'foss', 'version': '2014b'} -toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', - 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', - 'xtestconst.h', 'xtestext1proto.h' - ] + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] ], 'dirs': [] } diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-goolf-1.5.14.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-goolf-1.5.14.eb index 19c9e6fc6f5f08a30d5f1e3729d82dcdcfcf812c..eb7322e162c37df3378693e0284bf97959c91959 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-goolf-1.5.14.eb @@ -7,17 +7,16 @@ homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """XExtProto protocol headers.""" toolchain = {'name': 'goolf', 'version': '1.5.14'} -toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', - 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', - 'xtestconst.h', 'xtestext1proto.h' - ] + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] ], 'dirs': [] } diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb index 4ef466e9c69527e75c7429e420c2fbd7b5355eb4..6156597f8b47d36a6f3adb871602d3f084131ab9 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2014b.eb @@ -6,18 +6,17 @@ version = '7.3.0' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """XExtProto protocol headers.""" -toolchain = {'name': 'intel', 'version': '2014b'} -toolchainopts = {'optarch': True} +toolchain = {'name': 'intel', 'version': '2014b'} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', - 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', - 'xtestconst.h', 'xtestext1proto.h' - ] + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] ], 'dirs': [] } diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2015a.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2015a.eb index ee0ab26f86b30eb293f0052f21fe22542efcf0e2..96189817b03209c130ff7aeb7841140a5180893c 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2015a.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2015a.eb @@ -6,18 +6,17 @@ version = '7.3.0' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """XExtProto protocol headers.""" -toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'optarch': True} +toolchain = {'name': 'intel', 'version': '2015a'} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', - 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', - 'xtestconst.h', 'xtestext1proto.h' - ] + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] ], 'dirs': [] } diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2015b.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2015b.eb index 5e95a7e8bdddac1f321cedff66cd4f0d77654d75..d2b93b5852984f17f43ccc4bbb67701582564d9a 100644 --- a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2015b.eb +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2015b.eb @@ -6,18 +6,17 @@ version = '7.3.0' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" description = """XExtProto protocol headers.""" -toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'optarch': True} +toolchain = {'name': 'intel', 'version': '2015b'} sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { 'files': ['include/X11/extensions/%s' % x for x in [ - 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', - 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', - 'xtestconst.h', 'xtestext1proto.h' - ] + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] ], 'dirs': [] } diff --git a/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2016a.eb b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..af65fa2a9dd3942f28232cd48f898e309dbb07eb --- /dev/null +++ b/easybuild/easyconfigs/x/xextproto/xextproto-7.3.0-intel-2016a.eb @@ -0,0 +1,24 @@ +easyblock = 'ConfigureMake' + +name = 'xextproto' +version = '7.3.0' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """XExtProto protocol headers.""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/extensions/%s' % x for x in [ + 'agproto.h', 'cupproto.h', 'dbeproto.h', 'dpmsproto.h', 'EVIproto.h', 'geproto.h', 'lbxproto.h', + 'mitmiscproto.h', 'multibufproto.h', 'securproto.h', 'shapeproto.h', 'shm.h', 'shmstr.h', 'syncproto.h', + 'xtestconst.h', 'xtestext1proto.h' + ] + ], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-foss-2014b.eb b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-foss-2014b.eb index 83415bc67b5bf68d24f17bd8aa58d5d5d1a432cf..b0ee431324a89b1fa3fadff020277b8bf19ef059 100644 --- a/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-foss-2014b.eb +++ b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-foss-2014b.eb @@ -12,8 +12,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/extensions/panoramiXproto.h'], - 'dirs' : [] + 'files': ['include/X11/extensions/panoramiXproto.h'], + 'dirs': [] } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2014b.eb b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2014b.eb index 16a5aa86104978bc21ef555a81665ea8a7798b30..797b75e5e7bbef845864e69455f8815e058f126b 100644 --- a/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2014b.eb +++ b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2014b.eb @@ -12,8 +12,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/extensions/panoramiXproto.h'], - 'dirs' : [] + 'files': ['include/X11/extensions/panoramiXproto.h'], + 'dirs': [] } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2015b.eb b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2015b.eb index 75a6e48c1023b14155af04b9c43991fee5eca60a..e96e89759a86700ca7123ceac83cc42d8cdf545b 100644 --- a/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2015b.eb +++ b/easybuild/easyconfigs/x/xineramaproto/xineramaproto-1.2.1-intel-2015b.eb @@ -12,8 +12,8 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/extensions/panoramiXproto.h'], - 'dirs' : [] + 'files': ['include/X11/extensions/panoramiXproto.h'], + 'dirs': [] } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.19.0-intel-2015a.eb b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.19.0-intel-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..8f8f5df7e5c8080f0141dab96aa3543890782dda --- /dev/null +++ b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.19.0-intel-2015a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'xorg-macros' +version = '1.19.0' + +homepage = 'http://cgit.freedesktop.org/xorg/util/macros' +description = """X.org macros utilities.""" +toolchain = {'name': 'intel', 'version': '2015a'} + +source_urls = ['http://cgit.freedesktop.org/xorg/util/macros/snapshot'] # no slash ('/') at the end! +sources = ['util-macros-%(version)s.tar.bz2'] + +dependencies = [('Autoconf', '2.69')] + +preconfigopts = './autogen.sh && ' + +sanity_check_paths = { + 'files': ['share/pkgconfig/xorg-macros.pc'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.19.0-intel-2016a.eb b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.19.0-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..0697bb42ab9d8303dd75ce8c509379b9813c1535 --- /dev/null +++ b/easybuild/easyconfigs/x/xorg-macros/xorg-macros-1.19.0-intel-2016a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'xorg-macros' +version = '1.19.0' + +homepage = 'http://cgit.freedesktop.org/xorg/util/macros' +description = """X.org macros utilities.""" +toolchain = {'name': 'intel', 'version': '2016a'} + +source_urls = ['http://cgit.freedesktop.org/xorg/util/macros/snapshot'] # no slash ('/') at the end! +sources = ['util-macros-%(version)s.tar.gz'] + +builddependencies = [('Autotools', '20150215')] + +preconfigopts = './autogen.sh && ' + +sanity_check_paths = { + 'files': ['share/pkgconfig/xorg-macros.pc'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goalf-1.1.0-no-OFED.eb index bb6336c3400b219b59f2bd589a1d0d4f9f1ef854..f6c2e0c627b075726d7115f1f7daf97452286747 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goalf-1.1.0-no-OFED.eb @@ -4,7 +4,7 @@ name = 'xproto' version = '7.0.23' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = "X protocol and ancillary headers" +description = "X protocol and ancillary headers" toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} toolchainopts = {'optarch': True} @@ -13,12 +13,12 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', - 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', - 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', - 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', - 'XWDFile.h', 'Xwinsock.h']], - 'dirs' : [] - } + 'files': ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goolf-1.4.10.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goolf-1.4.10.eb index 6e21bf0fdc2db8f4b6adf8e7bcee21fb6d9c9c61..241268e4a6c250cc3afa9d885fb710d70dd88936 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goolf-1.4.10.eb @@ -4,7 +4,7 @@ name = 'xproto' version = '7.0.23' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = "X protocol and ancillary headers" +description = "X protocol and ancillary headers" toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchainopts = {'optarch': True} @@ -13,12 +13,12 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', - 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', - 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', - 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', - 'XWDFile.h', 'Xwinsock.h']], - 'dirs' : [] + 'files': ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs': [] } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goolf-1.5.14.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goolf-1.5.14.eb index 2837728722a326d727b98adf60577c1bc36cd0db..ab202e507532e16f135c812ab42446b513357916 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-goolf-1.5.14.eb @@ -4,7 +4,7 @@ name = 'xproto' version = '7.0.23' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = "X protocol and ancillary headers" +description = "X protocol and ancillary headers" toolchain = {'name': 'goolf', 'version': '1.5.14'} toolchainopts = {'optarch': True} @@ -13,12 +13,12 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', - 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', - 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', - 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', - 'XWDFile.h', 'Xwinsock.h']], - 'dirs' : [] + 'files': ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs': [] } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.0.6.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.0.6.eb index d005dadc8e4d5e9364e1ee63cf0883d2c846bd4d..e0f4abf1448d084414f892cfa66803384cc8c244 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.0.6.eb @@ -4,7 +4,7 @@ name = 'xproto' version = '7.0.23' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = "X protocol and ancillary headers" +description = "X protocol and ancillary headers" toolchain = {'name': 'ictce', 'version': '4.0.6'} toolchainopts = {'optarch': True} @@ -13,12 +13,12 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', - 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', - 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', - 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', - 'XWDFile.h', 'Xwinsock.h']], - 'dirs' : [] - } + 'files': ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.1.13.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.1.13.eb index 5f36cfb20c09c032c1e3b61a7a66c3c59b6f5087..884e64e8dd8f66d19644f74cb1f79a8f24eb849c 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-4.1.13.eb @@ -14,10 +14,10 @@ source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { 'files': ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', - 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', - 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', - 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', - 'XWDFile.h', 'Xwinsock.h']], + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], 'dirs': [] } diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-5.3.0.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-5.3.0.eb index 096a07bd53fb6588b1929ccd1224438590ae9af6..8f17ba5d4548d5ababdb1fda5135bf1348bdf3c9 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.23-ictce-5.3.0.eb @@ -4,7 +4,7 @@ name = 'xproto' version = '7.0.23' homepage = "http://www.freedesktop.org/wiki/Software/xlibs" -description = "X protocol and ancillary headers" +description = "X protocol and ancillary headers" toolchain = {'name': 'ictce', 'version': '5.3.0'} @@ -14,12 +14,12 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', - 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', - 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', - 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', - 'XWDFile.h', 'Xwinsock.h']], - 'dirs' : [] - } + 'files': ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs': [] +} moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-foss-2014b.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-foss-2014b.eb index 14e0666049a4219a89023782dcf52fc36ae3f48e..bdb6d9e8c701ee8d763836894a3f811ffd2bdf7c 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-foss-2014b.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-foss-2014b.eb @@ -13,12 +13,12 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', - 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', - 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', - 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', - 'XWDFile.h', 'Xwinsock.h']], - 'dirs' : [] + 'files': ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs': [] } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2014b.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2014b.eb index f620518acaaab369b02b3b9c27ad13cda77cb88c..74b305ce8c828651f3040eb014a71653751ec448 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2014b.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.26-intel-2014b.eb @@ -13,12 +13,12 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', - 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', - 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', - 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', - 'XWDFile.h', 'Xwinsock.h']], - 'dirs' : [] + 'files': ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs': [] } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.27-goolf-1.5.14.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.27-goolf-1.5.14.eb index 818673c9f98a6acac8f566ebae99f9f111b4dda4..4ec0e6221a7c612c24699e3a2e5b86a66df6442e 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.27-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.27-goolf-1.5.14.eb @@ -13,12 +13,12 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', - 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', - 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', - 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', - 'XWDFile.h', 'Xwinsock.h']], - 'dirs' : [] + 'files': ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs': [] } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.27-intel-2015a.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.27-intel-2015a.eb index 4093d23e909f0f6487b35f92d55620d48aca448a..f9bd7118c837200cfcb7eee52a81220e59b587b1 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.27-intel-2015a.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.27-intel-2015a.eb @@ -13,12 +13,12 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', - 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', - 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', - 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', - 'XWDFile.h', 'Xwinsock.h']], - 'dirs' : [] + 'files': ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs': [] } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.28-intel-2015b.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.28-intel-2015b.eb index 08bc258df3534f16dfb00cd387c98018366c0f51..d3de936da46b57f5ef1573b304b49a0a1db6e1e3 100644 --- a/easybuild/easyconfigs/x/xproto/xproto-7.0.28-intel-2015b.eb +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.28-intel-2015b.eb @@ -13,12 +13,12 @@ sources = [SOURCE_TAR_GZ] source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] sanity_check_paths = { - 'files' : ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', - 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', - 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', - 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', - 'XWDFile.h', 'Xwinsock.h']], - 'dirs' : [] + 'files': ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs': [] } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xproto/xproto-7.0.28-intel-2016a.eb b/easybuild/easyconfigs/x/xproto/xproto-7.0.28-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..1d3df458a719d23d17bd9c2000d79406d410ba74 --- /dev/null +++ b/easybuild/easyconfigs/x/xproto/xproto-7.0.28-intel-2016a.eb @@ -0,0 +1,23 @@ +easyblock = 'ConfigureMake' + +name = 'xproto' +version = '7.0.28' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = "X protocol and ancillary headers" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCE_TAR_GZ] +source_urls = ['http://xorg.freedesktop.org/archive/individual/proto/'] + +sanity_check_paths = { + 'files': ['include/X11/%s' % x for x in ['ap_keysym.h', 'HPkeysym.h', 'keysym.h', 'Xalloca.h', + 'Xatom.h', 'XF86keysym.h', 'Xfuncs.h', 'Xmd.h', 'Xos.h', 'Xpoll.h', 'Xprotostr.h', + 'Xw32defs.h', 'Xwindows.h', 'DECkeysym.h', 'keysymdef.h', 'Sunkeysym.h', 'Xarch.h', + 'Xdefs.h', 'Xfuncproto.h', 'X.h', 'Xosdefs.h', 'Xos_r.h', 'Xproto.h', 'Xthreads.h', + 'XWDFile.h', 'Xwinsock.h']], + 'dirs': [] +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-goolf-1.4.10.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-goolf-1.4.10.eb index 6676a3761dc18eb9f69fdfba24582193d35f91da..247e6131603625fe9763faf40d40911f88495565 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-goolf-1.4.10.eb @@ -9,18 +9,15 @@ description = """xtrans includes a number of routines to make X implementations """ toolchain = {'name': 'goolf', 'version': '1.4.10'} -toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files' : ['include/X11/Xtrans/%s' % x for x in [ - 'transport.c', 'Xtrans.c', 'Xtransdnet.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', 'Xtransos2.c', - 'Xtranssock.c', 'Xtranstli.c', 'Xtransutil.c' - ] - ], - 'dirs' : [] + 'files': ['include/X11/Xtrans/%s' % x for x in ['transport.c', 'Xtrans.c', 'Xtransdnet.c', 'Xtrans.h', + 'Xtransint.h', 'Xtranslcl.c', 'Xtransos2.c', 'Xtranssock.c', + 'Xtranstli.c', 'Xtransutil.c']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-goolf-1.5.14.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-goolf-1.5.14.eb index 55dfe1aab50729fd2845ceec7a90e67f1af3b5c4..33279f3ceb1d13f0ff542b4a32f69fd227ad643e 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-goolf-1.5.14.eb @@ -9,18 +9,15 @@ description = """xtrans includes a number of routines to make X implementations """ toolchain = {'name': 'goolf', 'version': '1.5.14'} -toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files' : ['include/X11/Xtrans/%s' % x for x in [ - 'transport.c', 'Xtrans.c', 'Xtransdnet.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', 'Xtransos2.c', - 'Xtranssock.c', 'Xtranstli.c', 'Xtransutil.c' - ] - ], - 'dirs' : [] + 'files': ['include/X11/Xtrans/%s' % x for x in ['transport.c', 'Xtrans.c', 'Xtransdnet.c', 'Xtrans.h', + 'Xtransint.h', 'Xtranslcl.c', 'Xtransos2.c', 'Xtranssock.c', + 'Xtranstli.c', 'Xtransutil.c']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-4.1.13.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-4.1.13.eb index ae5d033d58a65d14b3cd29e77591d0aa3ced1ce6..7b02bd54cac25f99d98aa3a49e48a338d4a2da65 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-4.1.13.eb @@ -8,18 +8,15 @@ description = """xtrans includes a number of routines to make X implementations at time of writing, it includes support for UNIX sockets, IPv4, IPv6, and DECnet. """ toolchain = {'name': 'ictce', 'version': '4.1.13'} -toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files' : ['include/X11/Xtrans/%s' % x for x in [ - 'transport.c', 'Xtrans.c', 'Xtransdnet.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', 'Xtransos2.c', - 'Xtranssock.c', 'Xtranstli.c', 'Xtransutil.c' - ] - ], - 'dirs' : [] + 'files': ['include/X11/Xtrans/%s' % x for x in ['transport.c', 'Xtrans.c', 'Xtransdnet.c', 'Xtrans.h', + 'Xtransint.h', 'Xtranslcl.c', 'Xtransos2.c', 'Xtranssock.c', + 'Xtranstli.c', 'Xtransutil.c']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-5.3.0.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-5.3.0.eb index c4c078f4c4bf1ee7face19fe4a68e79289c8c748..2b8c6ebbdd410c7aace435f2fc4a1cea8e90ca63 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.2-ictce-5.3.0.eb @@ -9,18 +9,15 @@ description = """xtrans includes a number of routines to make X implementations """ toolchain = {'name': 'ictce', 'version': '5.3.0'} -toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files' : ['include/X11/Xtrans/%s' % x for x in [ - 'transport.c', 'Xtrans.c', 'Xtransdnet.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', 'Xtransos2.c', - 'Xtranssock.c', 'Xtranstli.c', 'Xtransutil.c' - ] - ], - 'dirs' : [] + 'files': ['include/X11/Xtrans/%s' % x for x in ['transport.c', 'Xtrans.c', 'Xtransdnet.c', 'Xtrans.h', + 'Xtransint.h', 'Xtranslcl.c', 'Xtransos2.c', 'Xtranssock.c', + 'Xtranstli.c', 'Xtransutil.c']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.2.6-foss-2014b.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.2.6-foss-2014b.eb index 825d041de58eb257090c504fae2028eb84336051..6edc4ce87fa6a08c801d55c751de074ab83c211d 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.2.6-foss-2014b.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.2.6-foss-2014b.eb @@ -9,18 +9,14 @@ description = """xtrans includes a number of routines to make X implementations """ toolchain = {'name': 'foss', 'version': '2014b'} -toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files' : ['include/X11/Xtrans/%s' % x for x in [ - 'transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', - 'Xtranssock.c', 'Xtranstli.c', 'Xtransutil.c' - ] - ], - 'dirs' : [] + 'files': ['include/X11/Xtrans/%s' % x for x in ['transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', + 'Xtranslcl.c', 'Xtranssock.c', 'Xtranstli.c', 'Xtransutil.c']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb index d17e97131363b4ff81d852e791710940c254acbc..eac6d863c0ca1eb858d0ba4e759543ea0915be6b 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2014b.eb @@ -9,18 +9,14 @@ description = """xtrans includes a number of routines to make X implementations """ toolchain = {'name': 'intel', 'version': '2014b'} -toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files' : ['include/X11/Xtrans/%s' % x for x in [ - 'transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', - 'Xtranssock.c', 'Xtransutil.c' - ] - ], - 'dirs' : [] + 'files': ['include/X11/Xtrans/%s' % x for x in ['transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', + 'Xtranslcl.c', 'Xtranssock.c', 'Xtransutil.c']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2015a.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2015a.eb index dc21e51c71d9c7a650e692a435ba43f3b4d25003..788f0681d1d88b9ce19bf5b3db50ac71736f10ec 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2015a.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.4-intel-2015a.eb @@ -9,18 +9,14 @@ description = """xtrans includes a number of routines to make X implementations """ toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files' : ['include/X11/Xtrans/%s' % x for x in [ - 'transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', - 'Xtranssock.c', 'Xtransutil.c' - ] - ], - 'dirs' : [] + 'files': ['include/X11/Xtrans/%s' % x for x in ['transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', + 'Xtranslcl.c', 'Xtranssock.c', 'Xtransutil.c']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-goolf-1.5.14.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-goolf-1.5.14.eb index 2286309947c83ef6ac915b760efacf0498dbfeb0..573dd33276e37610b54b9027c2d5a9877add7aca 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-goolf-1.5.14.eb @@ -9,18 +9,14 @@ description = """xtrans includes a number of routines to make X implementations """ toolchain = {'name': 'goolf', 'version': '1.5.14'} -toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files' : ['include/X11/Xtrans/%s' % x for x in [ - 'transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', - 'Xtranssock.c', 'Xtransutil.c' - ] - ], - 'dirs' : [] + 'files': ['include/X11/Xtrans/%s' % x for x in ['transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', + 'Xtranslcl.c', 'Xtranssock.c', 'Xtransutil.c']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-intel-2015a.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-intel-2015a.eb index ef00169dc4f7f3dcad334ea7c782b674f3376d06..a2e3133d2af427c2a2e4417397581277b527fe85 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-intel-2015a.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-intel-2015a.eb @@ -9,18 +9,14 @@ description = """xtrans includes a number of routines to make X implementations """ toolchain = {'name': 'intel', 'version': '2015a'} -toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files' : ['include/X11/Xtrans/%s' % x for x in [ - 'transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', - 'Xtranssock.c', 'Xtransutil.c' - ] - ], - 'dirs' : [] + 'files': ['include/X11/Xtrans/%s' % x for x in ['transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', + 'Xtranslcl.c', 'Xtranssock.c', 'Xtransutil.c']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-intel-2015b.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-intel-2015b.eb index 94ae99a09d661c9e8f230eecb27abfc31067e31a..e36d13a40f8fa28d065b0f03a6026b7c37f7f53b 100644 --- a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-intel-2015b.eb +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-intel-2015b.eb @@ -9,18 +9,14 @@ description = """xtrans includes a number of routines to make X implementations """ toolchain = {'name': 'intel', 'version': '2015b'} -toolchainopts = {'optarch': True} sources = [SOURCE_TAR_GZ] source_urls = [XORG_LIB_SOURCE] sanity_check_paths = { - 'files' : ['include/X11/Xtrans/%s' % x for x in [ - 'transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', 'Xtranslcl.c', - 'Xtranssock.c', 'Xtransutil.c' - ] - ], - 'dirs' : [] + 'files': ['include/X11/Xtrans/%s' % x for x in ['transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', + 'Xtranslcl.c', 'Xtranssock.c', 'Xtransutil.c']], + 'dirs': [], } moduleclass = 'devel' diff --git a/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-intel-2016a.eb b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..bb8657a96c50ba70998f2054343e1ed92a68eab3 --- /dev/null +++ b/easybuild/easyconfigs/x/xtrans/xtrans-1.3.5-intel-2016a.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'xtrans' +version = '1.3.5' + +homepage = "http://www.freedesktop.org/wiki/Software/xlibs" +description = """xtrans includes a number of routines to make X implementations transport-independent; + at time of writing, it includes support for UNIX sockets, IPv4, IPv6, and DECnet. +""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCE_TAR_GZ] +source_urls = [XORG_LIB_SOURCE] + +sanity_check_paths = { + 'files': ['include/X11/Xtrans/%s' % x for x in ['transport.c', 'Xtrans.c', 'Xtrans.h', 'Xtransint.h', + 'Xtranslcl.c', 'Xtranssock.c', 'Xtransutil.c']], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb index b409a46b6b073e54b56eef15e81180aeea9c4b24..04fcdaad37b693c3506404ababea2fc09e0faaac 100644 --- a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb @@ -24,7 +24,7 @@ sources = [SOURCE_TAR_GZ] perl = 'Perl' perlver = '5.16.3' perlverextra = '' -versionsuffix = '-%s-%s%s' % (perl, perlver,perlverextra) +versionsuffix = '-%s-%s%s' % (perl, perlver, perlverextra) dependencies = [ (perl, perlver, perlverextra), diff --git a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb index fa45b910fb7db23e18330645f3d502d658ac6cbd..814139aaa0a11e22b1788e690bfef34bbb42d813 100644 --- a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb @@ -24,7 +24,7 @@ sources = [SOURCE_TAR_GZ] perl = 'Perl' perlver = '5.16.3' perlverextra = '' -versionsuffix = '-%s-%s%s' % (perl, perlver,perlverextra) +versionsuffix = '-%s-%s%s' % (perl, perlver, perlverextra) dependencies = [ (perl, perlver, perlverextra), diff --git a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb index f2c952182bddd6e54a4a125e7fdd00956524c8c2..4816f11ffde9ba24fff14f92533d7e3eed70c406 100644 --- a/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb +++ b/easybuild/easyconfigs/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb @@ -24,7 +24,7 @@ sources = [SOURCE_TAR_GZ] perl = 'Perl' perlver = '5.16.3' perlverextra = '' -versionsuffix = '-%s-%s%s' % (perl, perlver,perlverextra) +versionsuffix = '-%s-%s%s' % (perl, perlver, perlverextra) dependencies = [ (perl, perlver, perlverextra), diff --git a/easybuild/easyconfigs/y/YAXT/YAXT-0.2.1-ictce-5.5.0.eb b/easybuild/easyconfigs/y/YAXT/YAXT-0.2.1-ictce-5.5.0.eb index 21337d5364564f4b21bd10721d7aea3033ff9ef3..580265ba7e5439a42de0e40ec57fe607b6451fd9 100644 --- a/easybuild/easyconfigs/y/YAXT/YAXT-0.2.1-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/y/YAXT/YAXT-0.2.1-ictce-5.5.0.eb @@ -13,7 +13,7 @@ source_urls = ['https://www.dkrz.de/redmine/attachments/download/436/'] sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ["include/yaxt.h", "include/yaxt.mod", "lib/libyaxt.a", "lib/libyaxt.so"], + 'files': ["include/yaxt.h", "include/yaxt.mod", "lib/libyaxt.a", "lib/libyaxt.%s" % SHLIB_EXT], 'dirs': ["include/xt"], } diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb index 44f8a5205cbf8f33b0ae067a401b38a31e135c6e..e2bfa1c5fb273575a4c291e337500a3e6f12c742 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-goalf-1.1.0-no-OFED.eb @@ -24,8 +24,8 @@ source_urls = ['http://www.tortall.net/projects/yasm/releases/'] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sanity_check_paths = { - 'files': ['bin/yasm'], - 'dirs': [] - } + 'files': ['bin/yasm'], + 'dirs': [] +} moduleclass = 'lang' diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb index 592b6f211789f5bd332ff5c7374c2c4ece53132d..5b66cf87a7385755250cf7a76bd86a4242eff1b9 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-4.0.6.eb @@ -24,8 +24,8 @@ source_urls = ['http://www.tortall.net/projects/yasm/releases/'] toolchain = {'version': '4.0.6', 'name': 'ictce'} sanity_check_paths = { - 'files': ['bin/yasm'], - 'dirs': [] - } + 'files': ['bin/yasm'], + 'dirs': [] +} moduleclass = 'lang' diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb index ab7055fa1c2f9e3b8afb94c1373e0cdad4662819..a98dbc5915ec7690c85d7d91bbdf6293f99d5b64 100644 --- a/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.2.0-ictce-5.3.0.eb @@ -25,8 +25,8 @@ source_urls = ['http://www.tortall.net/projects/yasm/releases/'] toolchain = {'name': 'ictce', 'version': '5.3.0'} sanity_check_paths = { - 'files': ['bin/yasm'], - 'dirs': [] - } + 'files': ['bin/yasm'], + 'dirs': [] +} moduleclass = 'lang' diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2015a.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..90c83cfb4e7c3a8cb26ee9630c567d4355c747b9 --- /dev/null +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-foss-2015a.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'Yasm' +version = '1.3.0' + +homepage = 'http://www.tortall.net/projects/yasm/' +description = """Yasm: Complete rewrite of the NASM assembler with BSD license""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.tortall.net/projects/yasm/releases/'] + +sanity_check_paths = { + 'files': ['bin/yasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2.11.5.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2.11.5.eb new file mode 100644 index 0000000000000000000000000000000000000000..b2b7c412d9ad8e5c93c9ec279e6755bba714efe0 --- /dev/null +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-gimkl-2.11.5.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'Yasm' +version = '1.3.0' + +homepage = 'http://www.tortall.net/projects/yasm/' +description = """Yasm: Complete rewrite of the NASM assembler with BSD license""" + +toolchain = {'name': 'gimkl', 'version': '2.11.5'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.tortall.net/projects/yasm/releases/'] + +sanity_check_paths = { + 'files': ['bin/yasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016a.eb b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016a.eb new file mode 100644 index 0000000000000000000000000000000000000000..b5dae689242788d8205f1fbd757094f35fd95ad2 --- /dev/null +++ b/easybuild/easyconfigs/y/Yasm/Yasm-1.3.0-intel-2016a.eb @@ -0,0 +1,31 @@ +## +# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild +# +# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA +# Authors:: Fotis Georgatos +# License:: MIT/GPL +# $Id$ +# +# This work implements a part of the HPCBIOS project and is a component of the policy: +# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-90.html +## + +easyblock = 'ConfigureMake' + +name = 'Yasm' +version = '1.3.0' + +homepage = 'http://www.tortall.net/projects/yasm/' +description = """Yasm: Complete rewrite of the NASM assembler with BSD license""" + +toolchain = {'name': 'intel', 'version': '2016a'} + +sources = [SOURCELOWER_TAR_GZ] +source_urls = ['http://www.tortall.net/projects/yasm/releases/'] + +sanity_check_paths = { + 'files': ['bin/yasm'], + 'dirs': [], +} + +moduleclass = 'lang' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goalf-1.1.0-no-OFED.eb index 2f4d2827cfbe139b3d19ab3415825de6c79e9697..e6b15eb6108645accf35dea0a6df2107fdc858c5 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goalf-1.1.0-no-OFED.eb @@ -27,7 +27,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'files': ['lib/libzmq.%s' % SHLIB_EXT, 'lib/libzmq.a'], 'dirs': ['include', 'lib'], } diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goolf-1.4.10.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goolf-1.4.10.eb index 747cf1ffc258e1b955c6b20b0578ee4608367516..b73b89d70f69e29dbe5cbb6457e0c7cc440a900d 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-goolf-1.4.10.eb @@ -27,7 +27,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'files': ['lib/libzmq.%s' % SHLIB_EXT, 'lib/libzmq.a'], 'dirs': ['include', 'lib'] } diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-4.1.13.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-4.1.13.eb index 4dbaf2c3bd1f6382bdaa40fcdc0e9ac44ca0ee45..b83d808908d2c3b91f95a879ec86e95f57cf0281 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-4.1.13.eb @@ -27,7 +27,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'files': ['lib/libzmq.%s' % SHLIB_EXT, 'lib/libzmq.a'], 'dirs': ['include', 'lib'], } diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.3.0.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.3.0.eb index 2ada7561b2aa358e3ba6f307aa8b34721ace5af6..40d87c85a13ccf8729801f6019c273304fcabd3c 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.3.0.eb @@ -27,7 +27,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'files': ['lib/libzmq.%s' % SHLIB_EXT, 'lib/libzmq.a'], 'dirs': ['include', 'lib'], } diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.5.0.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.5.0.eb index 629f7f4392882f0169ff68e58c5e0d96d9582855..c3ed6bc8cded57f72795fd1a4abbbe4e9ad1a874 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-2.2.0-ictce-5.5.0.eb @@ -27,7 +27,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'files': ['lib/libzmq.%s' % SHLIB_EXT, 'lib/libzmq.a'], 'dirs': ['include', 'lib'], } diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goalf-1.1.0-no-OFED.eb index d1040c0b9b45dac314546601fb9161e239f59206..1252449cdc568af98bf6fc1a46f9989653a1b63b 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goalf-1.1.0-no-OFED.eb @@ -27,7 +27,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'files': ['lib/libzmq.%s' % SHLIB_EXT, 'lib/libzmq.a'], 'dirs': ['include', 'lib'], } diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goolf-1.4.10.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goolf-1.4.10.eb index e0a45d3a3a20018552c08135848cb06da525456a..95a131cfe830232c215af89e24f60cd9f9b6a61d 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-goolf-1.4.10.eb @@ -27,7 +27,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'files': ['lib/libzmq.%s' % SHLIB_EXT, 'lib/libzmq.a'], 'dirs': ['include', 'lib'] } diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-4.1.13.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-4.1.13.eb index 6ea68c4e6d1b0676d83406250a2d816c8d5c06b6..e10a755a01bfa84265bb47286457f0fd9253fd0b 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-4.1.13.eb @@ -29,7 +29,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'files': ['lib/libzmq.%s' % SHLIB_EXT, 'lib/libzmq.a'], 'dirs': ['include', 'lib'], } diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-5.3.0.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-5.3.0.eb index e61f976c13ef951dcf2a7612f9c3c144ac8248ac..527739faf9c27b1cc052ac1bf9113516be5863bc 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.2-ictce-5.3.0.eb @@ -29,7 +29,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'files': ['lib/libzmq.%s' % SHLIB_EXT, 'lib/libzmq.a'], 'dirs': ['include', 'lib'], } diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.5-foss-2015a.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.5-foss-2015a.eb index 537ac748fee1b628be5ac893fc9ffb85a660ad10..1f514501d975543cedf1ba1a283e92be5dce7af9 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.5-foss-2015a.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.5-foss-2015a.eb @@ -27,7 +27,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'files': ['lib/libzmq.%s' % SHLIB_EXT, 'lib/libzmq.a'], 'dirs': ['include', 'lib'], } diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.5-intel-2015a.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.5-intel-2015a.eb index 19243eab21929639d393a570ffb061db30487553..b225911a4b767b096e6a5774efd444a2a39569d0 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.5-intel-2015a.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-3.2.5-intel-2015a.eb @@ -29,7 +29,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'files': ['lib/libzmq.%s' % SHLIB_EXT, 'lib/libzmq.a'], 'dirs': ['include', 'lib'], } diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.0.3-ictce-5.5.0.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.0.3-ictce-5.5.0.eb index 24e4243b5aeb325796f1db53a387546f19e07143..7785988c2b9c9a8ec47be545379df697290080a5 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.0.3-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.0.3-ictce-5.5.0.eb @@ -27,7 +27,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'files': ['lib/libzmq.%s' % SHLIB_EXT, 'lib/libzmq.a'], 'dirs': ['include', 'lib'], } diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.1.3-intel-2015a.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.1.3-intel-2015a.eb index e23ec179be069f5fa56dbd8e1f3c1965cafc12ef..bc5c878ab6dbbe7484074ca71362209f8e67377a 100644 --- a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.1.3-intel-2015a.eb +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.1.3-intel-2015a.eb @@ -28,7 +28,7 @@ dependencies = [ ] sanity_check_paths = { - 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'files': ['lib/libzmq.%s' % SHLIB_EXT, 'lib/libzmq.a'], 'dirs': ['include', 'lib'], } diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.1.4-foss-2015a.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.1.4-foss-2015a.eb new file mode 100644 index 0000000000000000000000000000000000000000..344b95ebc3e62eba111621d94e2024cce2156657 --- /dev/null +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.1.4-foss-2015a.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'ZeroMQ' +version = '4.1.4' + +homepage = 'http://www.zeromq.org/' +description = """ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. + It gives you sockets that carry atomic messages across various transports like in-process, + inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, + pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered + products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous + message-processing tasks. It has a score of language APIs and runs on most operating systems.""" + +toolchain = {'name': 'foss', 'version': '2015a'} + +source_urls = ['http://download.zeromq.org/'] +sources = [SOURCELOWER_TAR_GZ] + +# --with-pgm will use shipped OpenPGM (in foreign subdir) +configopts = '--with-pic --with-system-pgm ' +configopts += 'OpenPGM_CFLAGS="-I$EBROOTOPENPGM/include/pgm-${EBVERSIONOPENPGM%.*}" ' +configopts += 'OpenPGM_LIBS="-L$EBROOTOPENPGM/lib -lpgm -lrt -lpthread -lm" ' + +dependencies = [ + ('OpenPGM', '5.2.122'), + ('util-linux', '2.27.1'), + ('libsodium', '1.0.8'), +] + +sanity_check_paths = { + 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'dirs': ['include', 'lib'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.1.4-intel-2015b.eb b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.1.4-intel-2015b.eb new file mode 100644 index 0000000000000000000000000000000000000000..0261518b887bb8c28f1bbfdba350ac606f403679 --- /dev/null +++ b/easybuild/easyconfigs/z/ZeroMQ/ZeroMQ-4.1.4-intel-2015b.eb @@ -0,0 +1,35 @@ +easyblock = 'ConfigureMake' + +name = 'ZeroMQ' +version = '4.1.4' + +homepage = 'http://www.zeromq.org/' +description = """ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. + It gives you sockets that carry atomic messages across various transports like in-process, + inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, + pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered + products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous + message-processing tasks. It has a score of language APIs and runs on most operating systems.""" + +toolchain = {'name': 'intel', 'version': '2015b'} + +source_urls = ['http://download.zeromq.org/'] +sources = [SOURCELOWER_TAR_GZ] + +# --with-pgm will use shipped OpenPGM (in foreign subdir) +configopts = '--with-pic --with-system-pgm ' +configopts += 'OpenPGM_CFLAGS="-I$EBROOTOPENPGM/include/pgm-${EBVERSIONOPENPGM%.*}" ' +configopts += 'OpenPGM_LIBS="-L$EBROOTOPENPGM/lib -lpgm -lrt -lpthread -lm" ' + +dependencies = [ + ('OpenPGM', '5.2.122'), + ('util-linux', '2.27.1'), + ('libsodium', '1.0.6'), +] + +sanity_check_paths = { + 'files': ['lib/libzmq.so', 'lib/libzmq.a'], + 'dirs': ['include', 'lib'], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goalf-1.1.0-no-OFED.eb index 9722f5606c7b1d8a7fc84e1a27a0e27ebde71e9c..37f161d0c04f49ad5e006b4e78edb6b1bb45d84c 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goalf-1.1.0-no-OFED.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goolf-1.4.10.eb index 9aed2a693231c0fbfe3f7b16bf3e9d5e103623c5..daba234ecf69097ceb284cb243b4fe1e0b77a296 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-goolf-1.4.10.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb index d01a7f9d722bfa01ac5754793cac6701c2724d61..b40c73ee4b884add8fa7fc2d23b216a425003ea2 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-3.2.2.u3.eb @@ -17,7 +17,7 @@ source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', patches = ['zlib-%(version)s-detected-icc.patch'] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb index 69d5b76957a7e291990747534f257d73fa72b419..7cbc32bfe9d79d43ebbfcd50bb7221f40894d0bd 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.0.6.eb @@ -17,7 +17,7 @@ source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', patches = ['zlib-%(version)s-detected-icc.patch'] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb index 47b80f9b8b1682046d06e589df9ca598fa57dec3..902026b61d30ed1926ca8644fcf701ae7b5aae62 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-4.1.13.eb @@ -17,7 +17,7 @@ source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', patches = ['zlib-%(version)s-detected-icc.patch'] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb index a0237792fee3de493f01f605939e8c13294dc4c4..822d286719f1f3644a4d9564ee384fb3b7c352c3 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.3.0.eb @@ -17,7 +17,7 @@ source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', patches = ['zlib-%(version)s-detected-icc.patch'] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.5.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.5.0.eb index 32533e0df9490a4f993f38e1901a8af250b7c2bd..1d129e59cb680b9ac37bf5ec099c479e9615a2e3 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.5-ictce-5.5.0.eb @@ -17,7 +17,7 @@ source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', patches = ['zlib-%(version)s-detected-icc.patch'] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmpolf-1.1.6.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmpolf-1.1.6.eb index 8ff26148228f15084e19e4bd084596f7f0c9882d..de4650180a41a801375440df521ae6822c714c36 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmpolf-1.1.6.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmpolf-1.1.6.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.1.12rc1.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.1.12rc1.eb index 226a64f7a2826bd8c9adf3cd373e89d042839f1e..fe4296cb856f3a549abcd0c2b66113d31c189396 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.1.12rc1.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.1.12rc1.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.2.7.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.2.7.eb index 48fed3624ccf0a9f28a71f13beae0235b3254ca6..9d2adb08155d5ef329907bedb29da0d961a35674 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.2.7.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgmvolf-1.2.7.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgoolf-1.1.7.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgoolf-1.1.7.eb index 1a47989ab0cbe72a31625e00b6741e4dea0a656a..c29279005d1cdc5d029dcd636138011738f5d745 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgoolf-1.1.7.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-cgoolf-1.1.7.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-foss-2014b.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-foss-2014b.eb index 9909f13d52261e731505ac292140d030cecf48d8..2cd7bfea2b90e14db1b5c27d2196a92e7b109404 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-foss-2014b.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-foss-2014b.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvapich2-1.7.12.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvapich2-1.7.12.eb index bf8527b9384e80e2fb2895041ddb7e1b1be462af..c2c22020a2fa3313590e1e4d512f04c6d839f78b 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvapich2-1.7.12.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvapich2-1.7.12.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ["include/zconf.h", "include/zlib.h", "lib/libz.a", "lib/libz.so"], + 'files': ["include/zconf.h", "include/zlib.h", "lib/libz.a", "lib/libz.%s" % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12.eb index 524811dfd5da35df93b446206aae4d1bee63ac22..0b958206e7aef98bd3bb14163e0227f1ec22e895 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ["include/zconf.h", "include/zlib.h", "lib/libz.a", "lib/libz.so"], + 'files': ["include/zconf.h", "include/zlib.h", "lib/libz.a", "lib/libz.%s" % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12rc1.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12rc1.eb index 93ea64e321f4f327c030f6462236e8aafcb57d31..92dd07257ea883752da96cf492c8b7acecdc1bb4 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12rc1.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-gmvolf-1.7.12rc1.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ["include/zconf.h", "include/zlib.h", "lib/libz.a", "lib/libz.so"], + 'files': ["include/zconf.h", "include/zlib.h", "lib/libz.a", "lib/libz.%s" % SHLIB_EXT], 'dirs': [] } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.1.0-no-OFED.eb index 2349edc7b62aade492557bc97a49930d8a98082d..fb65776a3a08b8f76e4d22e5961a00796c1d506d 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.1.0-no-OFED.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.5.12-no-OFED.eb index 11979135cdf9d4a67430c680ca4ef2787254f29b..7f6715e88a3cba493a0cc821396f63295810c544 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-goalf-1.5.12-no-OFED.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb index b0a946a39d64b9e15f68d085dee9973a95b87d1b..e32a3e79c43e8ae98ec50059a3f1e7ee3dabddd3 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-3.2.2.u3.eb @@ -17,7 +17,7 @@ source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', patches = ['zlib-%(version)s-detected-icc.patch'] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.10.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.10.eb index c028b117215e1953d68dc6e92cd6be06fa781678..db3a0dfff8f61e3f2f858988691fc97fcb89ab56 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.10.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.10.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.6.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.6.eb index 9728ddb7b21079f345024d4862c7ccfcaeb3a9d7..b9505d072cf65872ee05a6368357e63fbd3251be 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.0.6.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.1.13.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.1.13.eb index f713fd7cf7121c3887f0c9d7784fce937c2471c9..8b2f4375e42128673d7aa19f62731ee3151330aa 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-4.1.13.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.2.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.2.0.eb index 1afe111ef5d4cf70894bdff96a360a993d2c0845..7fb621ba0df510fc25cd2d9bf8260f2d42f05553 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.2.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.2.0.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.3.0.eb index 115527d009f9bb7e91eafddf0b5473fe86ea89a1..90333383fbbadf89442490bf25cf17f18aa41fa0 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.3.0.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.4.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.4.0.eb index b5a38518237b8a096ef0c48281cda74b922b1987..ab73afa7b9c8c5713e20f032ddfacbdfeef12a91 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.4.0.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.5.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.5.0.eb index 07c5786ac6a7fcbd9c66a37935ca10b0dfb97027..260dbe8959d1f3c47c075525db9d56f0e56e67a0 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-5.5.0.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-6.1.5.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-6.1.5.eb index 62b9777b1c06b1fbded08b09b802f5041d09927e..208dc7a9fd447e37ae8e6baca89d142bb8cae985 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-6.1.5.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-ictce-6.1.5.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-intel-2015a.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-intel-2015a.eb index d4d69bb5d671645a08c607034a63e94d0def7f18..ebb898495951a4c31597049b9ca3e29c34a7ad32 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-intel-2015a.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-intel-2015a.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iomkl-4.6.13.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iomkl-4.6.13.eb index 70d765ec1256d368086d347733babe553d82e6bc..c7709c49619ed210497cbd70afc41c5cb17c5c0b 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iomkl-4.6.13.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iomkl-4.6.13.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb index 34070b60f491ae504b148f3d0a1120fb5616938c..9bdeabddeca5b67e68baa18d71b18b30ea9bc9b7 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.7-iqacml-3.7.3.eb @@ -17,7 +17,7 @@ source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', patches = ['zlib-%(version)s-detected-icc.patch'] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-2015.06-XC.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-2015.06-XC.eb new file mode 100644 index 0000000000000000000000000000000000000000..fbc74998eb0dd7e2f193bf5c87a19d1497c114e8 --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-2015.06-XC.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'CrayGNU', 'version': '2015.06-XC'} +toolchainopts = {'pic': True, } + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-2015.11-XC.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-2015.11-XC.eb new file mode 100644 index 0000000000000000000000000000000000000000..0c6915d7cd08edb440c35302ff859f243128c27b --- /dev/null +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-2015.11-XC.eb @@ -0,0 +1,22 @@ +easyblock = 'ConfigureMake' + +name = 'zlib' +version = '1.2.8' + +homepage = 'http://www.zlib.net/' +description = """zlib is designed to be a free, general-purpose, legally unencumbered -- that is, + not covered by any patents -- lossless data-compression library for use on virtually any + computer hardware and operating system.""" + +toolchain = {'name': 'CrayGNU', 'version': '2015.11-XC'} +toolchainopts = {'pic': True, } + +sources = [SOURCELOWER_TAR_GZ] +source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] + +sanity_check_paths = { + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], + 'dirs': [], +} + +moduleclass = 'lib' diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2-binutils-2.25.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2-binutils-2.25.eb index 2f2a76d597aec547ba00a50b5f5b97d9e94b4fc4..6aa4e52aa9e45469ac92bce8a3ab42b1b840d133 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2-binutils-2.25.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2-binutils-2.25.eb @@ -18,7 +18,7 @@ source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', builddependencies = [('binutils', '2.25', '', True)] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb index 6d7d97956e84ba880639c172817415d04e86e492..9010ac84fcd90ecf8487a5cf8142c9bf7a602c6c 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.2.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.1.29.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.3-2.25.eb similarity index 83% rename from easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.1.29.eb rename to easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.3-2.25.eb index f6714bc2c14f4a912545c40bdd9d01a116640c8c..ed40a656ffd5f78cbfaae2e1472ed0e854e5f661 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.1.29.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.3-2.25.eb @@ -8,14 +8,14 @@ description = """zlib is designed to be a free, general-purpose, legally unencum not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.""" -toolchain = {'name': 'CrayGNU', 'version': '5.1.29'} -toolchainopts = {'pic': True, 'dynamic': True} +toolchain = {'name': 'GCC', 'version': '4.9.3-2.25'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.3-binutils-2.25.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.3-binutils-2.25.eb index 4e570a5bd454e24d780f3954379135c4cae825ba..9ab612053c2c06423ee719f6d14013a087cca6f5 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.3-binutils-2.25.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.3-binutils-2.25.eb @@ -18,7 +18,7 @@ source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', builddependencies = [('binutils', '2.25', '', True)] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.3.eb index 9473da0a68d0e1a675ac14135d1d306dbb64cc82..f19cf0b1f2e0da584b3a02594610a3f8bca84d86 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-4.9.3.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-5.1.0-binutils-2.25.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-5.1.0-binutils-2.25.eb index e551df98f0c6eb0f1a871804095b5b667e3f52ab..3475aad2a70954de80c92a353b67aa5efe40955d 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-5.1.0-binutils-2.25.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCC-5.1.0-binutils-2.25.eb @@ -18,7 +18,7 @@ source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', builddependencies = [('binutils', '2.25', '', True)] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCCcore-4.9.3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCCcore-4.9.3.eb index 48e9e054620e478bae30ab3f056a633eb637268d..1353624765dbaa410ea76afe149c404dc3e94a63 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCCcore-4.9.3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GCCcore-4.9.3.eb @@ -18,7 +18,7 @@ source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', builddependencies = [('binutils', '2.25', '', True)] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GNU-4.9.3-2.25.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GNU-4.9.3-2.25.eb index dd3f32139a458df31de518c8d360438a14b51737..cb71ffc347c8711a8f75529c74f26a32a32e35a8 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GNU-4.9.3-2.25.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-GNU-4.9.3-2.25.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb index a9a1a7a751d10661d5d1fa9c669695535f0f8afd..cfcb2bbea8f6605ef0c782108ab7c692f32b6d68 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2014b.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015.05.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015.05.eb index 33f49407b27900b1d56bc1fea2a9e1ccf2950d9d..d7d7de4e67d3dda191c69c27955088714ccd9f66 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015.05.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015.05.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015a.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015a.eb index 564e7c630a5ab7a3c849406ea8dfbcffa29b82d7..db7aae0d304e3638c7c034bd9ff71d290899396d 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015a.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015a.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015b.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015b.eb index 7b3f5726f1ab937dc146420cf951d33a02654af4..7816ad0e723b8ffdc813cbe3c559c69e4494cbb1 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015b.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2015b.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.25.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2016a.eb similarity index 83% rename from easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.25.eb rename to easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2016a.eb index 17db62ce981b6853924d35a91df9acb6b937870d..8e13f1aa09f4c5459191f4bb3ff859ef31f829ce 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.25.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-foss-2016a.eb @@ -8,14 +8,14 @@ description = """zlib is designed to be a free, general-purpose, legally unencum not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.25'} -toolchainopts = {'pic': True, 'dynamic': True} +toolchain = {'name': 'foss', 'version': '2016a'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gimkl-2.11.5.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gimkl-2.11.5.eb index 587247480f428e1399cef831ffe43aec9093bf62..5d61da12e59b593e55aae23513c9bfec9189e71c 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gimkl-2.11.5.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gimkl-2.11.5.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goalf-1.5.12-no-OFED.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goalf-1.5.12-no-OFED.eb index 6842a4905a708854fbd1bcbb6536dd169343d5df..84377844a5393f1416c6fde26062dc1de582ce47 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goalf-1.5.12-no-OFED.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goalf-1.5.12-no-OFED.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gompi-1.5.16.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gompi-1.5.16.eb index 695c4e9adbb27d0e96391122c3206cf319887a1f..193fdea71fddcf06b88bf268e9048b1454fc56b7 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gompi-1.5.16.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-gompi-1.5.16.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb index ef7ff90823dbae2808d22b9f34b886a0c35af56a..e939da6164e7b2f95b7bf065dd61f8311156f288 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.4.10.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb index 04ad52753bcaac3d86e013feb87397fe92510c34..e6c8fcbaf522bb3bd084f1f3e8bb9a68a88aa7c6 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.14.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.16.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.16.eb index 2f5f986ee278908a43df72cb4a58c14bde163d09..fa938352c895c0d9669e942a33ef64f5e3d1b233 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.16.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.5.16.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.7.20.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.7.20.eb index f1b7c406e89242313da17fd5ebc43177bb36f7d3..5f8aec5188957b9bb360f3547deeac3cb09f12e1 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.7.20.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-goolf-1.7.20.eb @@ -15,7 +15,7 @@ source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', sources = [SOURCELOWER_TAR_GZ] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb index 19090e972d5576df82c2a2fc74b4b5d83e05805f..12a56a28d09b2dcca9d7b23e2cdbb06a5447daf2 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-4.1.13.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb index 6079bed795ed96f2a77eaa210b9b59888e9a58d7..e7a70ba0d0593051f0891325689b540766a1b62e 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.3.0.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.4.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.4.0.eb index 676cd36a50ad788dcea662b55ee8f655bd63fc97..15b66c7537251cbbd27e352a5a27e5ff6ce03978 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.4.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.4.0.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb index 7e2745fe837d8a9809070441b6821af80a1bb1ec..fe67071a0f85be8afd687bbca4e4dedc5ef6bf64 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-5.5.0.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%s' % version, 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.2.5.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.2.5.eb index 6159219e439dd8d07be62daf007fc7b050f0071d..f0a6894a1594b2f147222d6de3b7615b0e48bbce 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.2.5.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.2.5.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%s' % version, 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.3.5.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.3.5.eb index 2a01e395d92aca91052209163ead0e460a77e6c1..9996730fc60bcd7499bfcc56024312962e5896f7 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.3.5.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-6.3.5.eb @@ -18,7 +18,7 @@ source_urls = [ ] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.1.2.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.1.2.eb index 9847388bbe3f8370ecb4364164bc67655b1f2b70..d1ec42ed0ef4b44de8fe78b1be93bb8f74f4f416 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.1.2.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.1.2.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%s' % version, 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.3.5.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.3.5.eb index 598e2f0a701d24be498ce8d74938e3addb40efe7..c37c55c1d2f2e2243321c67dd7bcca316222f660 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.3.5.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-ictce-7.3.5.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%s' % version, 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014.06.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014.06.eb index 8222dedfd6ee8d5e4813f4561b1c477844b1e60f..603aa1686ed43087844ea1edeffe907a6c9c19f8 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014.06.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014.06.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014b.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014b.eb index ea8ec92737edc442421d201a276260bd067603a2..855a831081b8d757b822dcb45c6031df952b473a 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014b.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2014b.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015a.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015a.eb index 08196c546846d8b15e143dac1d2db88124b98bb6..ac61371779598ef6ab9563bb1fefc63d2c5acea6 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015a.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015a.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015b.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015b.eb index 3f7d7ddee0bcc513c16cc14c41a19ce4b3ab1d9b..4b58f77dff869fb5c3061d3fce1e3898da67ab95 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015b.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2015b.eb @@ -15,7 +15,7 @@ sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.40.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2016a.eb similarity index 83% rename from easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.40.eb rename to easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2016a.eb index 736d7b43ce9634350228d1ea50eab4fa7c6ed67e..e9099d2071061c820cff142811e6da975979a48a 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-CrayGNU-5.2.40.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-intel-2016a.eb @@ -8,14 +8,14 @@ description = """zlib is designed to be a free, general-purpose, legally unencum not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.""" -toolchain = {'name': 'CrayGNU', 'version': '5.2.40'} -toolchainopts = {'pic': True, 'dynamic': True} +toolchain = {'name': 'intel', 'version': '2016a'} +toolchainopts = {'pic': True} sources = [SOURCELOWER_TAR_GZ] source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', 'download')] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb index 2e832099e810bc71908f93f70c9365dbbb46cebd..2cc314be64bdcb9d41b1c8408620104064836319 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8-iqacml-3.7.3.eb @@ -17,7 +17,7 @@ source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', patches = ['zlib-1.2.7-detected-icc.patch'] sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zlib/zlib-1.2.8.eb b/easybuild/easyconfigs/z/zlib/zlib-1.2.8.eb index 606b98c86a4808bba071f428469065b20a4b26b8..82a1155e2efd8f23e8967a8d05e2b73f27a7d868 100644 --- a/easybuild/easyconfigs/z/zlib/zlib-1.2.8.eb +++ b/easybuild/easyconfigs/z/zlib/zlib-1.2.8.eb @@ -18,7 +18,7 @@ source_urls = [('http://sourceforge.net/projects/libpng/files/zlib/%(version)s', buildopts = 'CFLAGS="-O2 -fPIC"' sanity_check_paths = { - 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.so'], + 'files': ['include/zconf.h', 'include/zlib.h', 'lib/libz.a', 'lib/libz.%s' % SHLIB_EXT], 'dirs': [], } diff --git a/easybuild/easyconfigs/z/zsh/zsh-5.0.2-goolf-1.4.10.eb b/easybuild/easyconfigs/z/zsh/zsh-5.0.2-goolf-1.4.10.eb index f585c174c3956259c7a92d9164341a952e2b081a..1b0f601684e411141755c48f641508b05a515ded 100644 --- a/easybuild/easyconfigs/z/zsh/zsh-5.0.2-goolf-1.4.10.eb +++ b/easybuild/easyconfigs/z/zsh/zsh-5.0.2-goolf-1.4.10.eb @@ -6,7 +6,7 @@ version = '5.0.2' homepage = 'http://www.zsh.org/' description = "Zsh is a shell designed for interactive use, although it is also a powerful scripting language." -toolchain = {'name':'goolf', 'version': '1.4.10'} +toolchain = {'name': 'goolf', 'version': '1.4.10'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] diff --git a/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-4.1.13.eb b/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-4.1.13.eb index 72db46c65f0bb3f1918ab69e81e9854d433b4103..14216f20094277b46d7d39231a4f8d33af5346f8 100644 --- a/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-4.1.13.eb +++ b/easybuild/easyconfigs/z/zsh/zsh-5.0.2-ictce-4.1.13.eb @@ -6,7 +6,7 @@ version = '5.0.2' homepage = 'http://www.zsh.org/' description = "Zsh is a shell designed for interactive use, although it is also a powerful scripting language." -toolchain = {'name':'ictce', 'version': '4.1.13'} +toolchain = {'name': 'ictce', 'version': '4.1.13'} sources = [SOURCELOWER_TAR_GZ] source_urls = ['http://prdownloads.sourceforge.net/%(namelower)s'] diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb index 35d2652e6207416b5753b2e9b2f45d940d228a35..b70a682d96ccb217efb75557d3537095d84b994f 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-goalf-1.1.0-no-OFED.eb @@ -24,8 +24,8 @@ source_urls = ['http://zsync.moria.org.uk/download/'] toolchain = {'name': 'goalf', 'version': '1.1.0-no-OFED'} sanity_check_paths = { - 'files': ['bin/zsync'], - 'dirs': [] - } + 'files': ['bin/zsync'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb index 406951135bba5fa94653b3340c48cd98037579bb..9a77005cb584bd2b9f755e8899bb953f91b55920 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-4.0.6.eb @@ -24,8 +24,8 @@ source_urls = ['http://zsync.moria.org.uk/download/'] toolchain = {'version': '4.0.6', 'name': 'ictce'} sanity_check_paths = { - 'files': ['bin/zsync'], - 'dirs': [] - } + 'files': ['bin/zsync'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb index d72b794ff171ae0f416a46f2ac88655e41ef1a32..960ac2460a460377578f5c7fdb7e735c0e2e62ee 100644 --- a/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb +++ b/easybuild/easyconfigs/z/zsync/zsync-0.6.2-ictce-5.3.0.eb @@ -25,8 +25,8 @@ source_urls = ['http://zsync.moria.org.uk/download/'] toolchain = {'name': 'ictce', 'version': '5.3.0'} sanity_check_paths = { - 'files': ['bin/zsync'], - 'dirs': [] - } + 'files': ['bin/zsync'], + 'dirs': [] +} moduleclass = 'tools' diff --git a/setup.cfg b/setup.cfg new file mode 100644 index 0000000000000000000000000000000000000000..700c19b72cbc7dfcffbc177b124db83c6312f0d3 --- /dev/null +++ b/setup.cfg @@ -0,0 +1,2 @@ +[easy_install] + diff --git a/setup.py b/setup.py index e369b435aa918ea1dde7c8f2587398f5d7b28c91..e1abe096bf78a096b6a3558edba05ece25d669ef 100644 --- a/setup.py +++ b/setup.py @@ -1,11 +1,11 @@ ## -# Copyright 2012-2015 Ghent University +# Copyright 2012-2016 Ghent University # # This file is part of EasyBuild, # originally created by the HPC team of Ghent University (http://ugent.be/hpc/en), # with support of Ghent University (http://ugent.be/hpc), # the Flemish Supercomputer Centre (VSC) (https://vscentrum.be/nl/en), -# the Hercules foundation (http://www.herculesstichting.be/in_English) +# Flemish Research Foundation (FWO) (http://www.fwo.be/en) # and the Department of Economy, Science and Innovation (EWI) (http://www.ewi-vlaanderen.be/en). # # http://github.com/hpcugent/easybuild @@ -47,7 +47,7 @@ from distutils import log # recent setuptools versions will *TRANSFORM* something like 'X.Y.Zdev' into 'X.Y.Z.dev0', with a warning like # UserWarning: Normalizing '2.4.0dev' to '2.4.0.dev0' # This causes problems further up the dependency chain... -VERSION = '2.6.0.dev0' +VERSION = '2.7.0.dev0' API_VERSION = VERSION.split('.')[0] EB_VERSION = '.'.join(VERSION.split('.')[0:2]) diff --git a/test/__init__.py b/test/__init__.py index c4b9363e8a7552058ed8435efc500926e9528490..856f7e41786601692b5b4c2b61365f2a87793e75 100644 --- a/test/__init__.py +++ b/test/__init__.py @@ -5,7 +5,7 @@ # originally created by the HPC team of Ghent University (http://ugent.be/hpc/en), # with support of Ghent University (http://ugent.be/hpc), # the Flemish Supercomputer Centre (VSC) (https://vscentrum.be/nl/en), -# the Hercules foundation (http://www.herculesstichting.be/in_English) +# Flemish Research Foundation (FWO) (http://www.fwo.be/en) # and the Department of Economy, Science and Innovation (EWI) (http://www.ewi-vlaanderen.be/en). # # http://github.com/hpcugent/easybuild diff --git a/test/easyconfigs/easyconfigs.py b/test/easyconfigs/easyconfigs.py index d77b78e436012b246172efa33d1748c58753927f..f3b329c87239c9d63d070d9f13ed67a08f1bfdc6 100644 --- a/test/easyconfigs/easyconfigs.py +++ b/test/easyconfigs/easyconfigs.py @@ -5,7 +5,7 @@ # originally created by the HPC team of Ghent University (http://ugent.be/hpc/en), # with support of Ghent University (http://ugent.be/hpc), # the Flemish Supercomputer Centre (VSC) (https://vscentrum.be/nl/en), -# the Hercules foundation (http://www.herculesstichting.be/in_English) +# Flemish Research Foundation (FWO) (http://www.fwo.be/en) # and the Department of Economy, Science and Innovation (EWI) (http://www.ewi-vlaanderen.be/en). # # http://github.com/hpcugent/easybuild @@ -338,19 +338,21 @@ def template_easyconfig_test(self, spec): def suite(): """Return all easyblock initialisation tests.""" - - # dynamically generate a separate test for each of the available easyblocks - easyconfigs_path = get_paths_for("easyconfigs")[0] - specs = glob.glob('%s/*/*/*.eb' % easyconfigs_path) - - for spec in specs: - # dynamically define new inner functions that can be added as class methods to InitTest - exec("def innertest(self): template_easyconfig_test(self, '%s')" % spec) - spec = os.path.basename(spec) - innertest.__doc__ = "Test for parsing of easyconfig %s" % spec - innertest.__name__ = "test__parse_easyconfig_%s" % spec # double underscore so parsing tests are run first - setattr(EasyConfigTest, innertest.__name__, innertest) - + # dynamically generate a separate test for each of the available easyconfigs + # define new inner functions that can be added as class methods to InitTest + easyconfigs_path = get_paths_for('easyconfigs')[0] + cnt = 0 + for (subpath, _, specs) in os.walk(easyconfigs_path, topdown=True): + for spec in specs: + if spec.endswith('.eb') and spec != 'TEMPLATE.eb': + cnt += 1 + exec("def innertest(self): template_easyconfig_test(self, '%s')" % os.path.join(subpath, spec)) + innertest.__doc__ = "Test for parsing of easyconfig %s" % spec + # double underscore so parsing tests are run first + innertest.__name__ = "test__parse_easyconfig_%s" % spec + setattr(EasyConfigTest, innertest.__name__, innertest) + + print "Found %s easyconfigs..." % cnt return TestLoader().loadTestsFromTestCase(EasyConfigTest) if __name__ == '__main__': diff --git a/test/easyconfigs/suite.py b/test/easyconfigs/suite.py index 6afbd6ffb15accfe319e11c510c9e60e6131d8ba..79a1fb0d085fb6c8abcf74f714b697dddabe1c88 100644 --- a/test/easyconfigs/suite.py +++ b/test/easyconfigs/suite.py @@ -6,7 +6,7 @@ # originally created by the HPC team of Ghent University (http://ugent.be/hpc/en), # with support of Ghent University (http://ugent.be/hpc), # the Flemish Supercomputer Centre (VSC) (https://vscentrum.be/nl/en), -# the Hercules foundation (http://www.herculesstichting.be/in_English) +# Flemish Research Foundation (FWO) (http://www.fwo.be/en) # and the Department of Economy, Science and Innovation (EWI) (http://www.ewi-vlaanderen.be/en). # # http://github.com/hpcugent/easybuild